|
Job Description | ASR85416.1_tail_terminator_[Mycobacterium_phage_Cain] | Confidence | 3.30% | Date | Mon Jun 7 16:50:02 BST 2021 |
Rank | 68 | Aligned Residues | 50 |
% Identity | 18% | Template | c6b7nC_ |
PDB info |
PDB header:viral protein | Chain: C: PDB Molecule:spike protein; |
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
|
Resolution | 3.30 Å |
|
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Predicted Secondary structure |   |
| |
|
| | |
| | | |
|
|
|
|
|
|
|
|
|
| | | | | | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | | | | | | | | | |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | L | H | A | V | H | K | H | I | V | V | P | A | A | A | D | D | P | G | G | E | V | W | I | T | G | A | K | H | E | F | G | P | A | S | L | D | D | K | R | V | P | L | P | G | M | Q | S | A | V | F | W | T | I | G | L |
Query Conservation |   |
|
|
|
|   |
|   |   |
|
|   |
|   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|   |
|   |   |
|
|
|
|
|
|
|   |   |
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |
|   |
|   |   |   |   |   |   | . | . | . | . | . |
|   |   |
|
|
|
|
|   |   |
|   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
Template Sequence |   |
I | L | P | P | D | L | T | D | F | T | V | Y | R | T | . |
. |
. |
. |
. |
G | Q | F | Y | A | N | G | Y | L | L | G | T | L | P | . |
I | T | V | N | Y | V | R | L | Y | R | G | H | L | S | A | N | S | A | H | F | A | L |
Template Known Secondary structure |   |
|
|
| S | S |
|
| | | | | | T | T | . | . | . | . | . | S | | | | S | S | S | S | | | | |
| S | . | S |
| | | | | | | |
|
| S |
|
| S |
|
|
| | | | |
Template Predicted Secondary structure |   |
|
|
|
|
| | | | | | | | | | . | . | . | . | . | | | | | | | | | | | | |
|
| . |
|
| | | | | | | | | | |
|
|
|
| | | | | | |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 210 | . | . | . | . | . | . | . | |
. | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is now FREE for commercial users!
All images and data generated by Phyre2 are free to use in any
publication with acknowledgement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis |
Kelley LA et al. Nature Protocols
10, 845-858 (2015)
[paper]
[Citation
link] |
  |
|
|
|