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Summary |
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Sequence analysis |
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Secondary structure and disorder prediction [Show] |
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1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |||||||||||||||||||||
Sequence | M | T | D | H | T | L | S | L | D | I | A | G | E | V | G | A | D | P | A | D | V | A | E | A | A | A | R | A | A | E | H | A | K | A | A | A | A | E | L | L | L | D | M | V | P | A | E | S | Y | D | V | L | Y | A | A | L | S | A | R | V | ||||||||||||||||||||
Secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Disorder | ? | ? | ? | ? | ? | ? | ? | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Disorder confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | |||||||||||||||||||||
Sequence | T | Y | E | R | N | G | G | R | Q | L | R | M | F | V | P | G | K | P | A | P | Q | G | S | K | D | F | M | G | F | K | K | A | P | E | G | S | P | P | G | T | R | G | P | A | I | L | K | E | S | S | A | A | V | G | P | W | R | E | R | I | ||||||||||||||||||||
Secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Disorder | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Disorder confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | |||||||||||||||||||||
Sequence | A | L | A | S | A | D | A | M | L | S | A | G | L | P | V | L | D | K | K | Y | P | V | R | A | S | L | T | F | V | M | P | R | P | S | G | T | P | K | S | Y | T | P | P | A | V | K | R | P | D | L | D | K | L | A | R | A | V | L | D | G | ||||||||||||||||||||
Secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Disorder | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Disorder confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
. | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | ||||||||||||||||||||||||
Sequence | L | T | D | V | V | W | L | D | D | S | Q | V | D | D | L | H | A | R | K | V | L | A | E | L | S | Q | Q | P | G | C | H | M | R | I | A | S | P | G | W | G | D | E | A | I | A | A | W | Q | A | A | N | G | G | A | A | H | V | |||||||||||||||||||||||
Secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Disorder | ? | ? | ? | ? | ? | ? | ? | ? | ? | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Disorder confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Domain analysis [Show] |
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PDB 1q8r chain A![]() Region: 69 - 218 Phyre2
PDB 6idy chain C![]() Region: 50 - 91 Phyre2
PDB 5zc1 chain A![]() Region: 149 - 217 Phyre2
PDB 7crc chain B![]() Region: 91 - 124 Phyre2
PDB 3vh5 chain D![]() Region: 21 - 44 Phyre2
PDB 3w06 chain A![]() Region: 51 - 79 Phyre2
PDB 4wnx chain A![]() Region: 136 - 156 Phyre2
PDB 1hyw chain A![]() Region: 43 - 72 Phyre2
PDB 6u08 chain H![]() Region: 47 - 76 Phyre2
PDB 4plo chain A![]() Region: 136 - 156 Phyre2
PDB 4aqs chain A![]() Region: 136 - 156 Phyre2
PDB 4khb chain F![]() Region: 70 - 77 Phyre2
PDB 1e5q chain A domain 2![]() Region: 70 - 92 Phyre2
PDB 6los chain H![]() Region: 78 - 94 Phyre2
PDB 3b6n chain A![]() Region: 169 - 205 Phyre2
PDB 5gn0 chain H![]() Region: 151 - 169 Phyre2
PDB 6m9k chain D![]() Region: 166 - 189 Phyre2
PDB 6los chain G![]() Region: 78 - 93 Phyre2
PDB 2eze chain A![]() Region: 80 - 95 Phyre2
PDB 1dgs chain A domain 2![]() Region: 193 - 218 Phyre2
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Detailed template information [Hide] |
Binding site prediction |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
Phyre is now FREE for commercial users!
All images and data generated by Phyre2 are free to use in any publication with acknowledgement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis. | ||||||||||||||
Kelley LA et al.. Nature Protocols 10, 845-858 (2015)[pdf] [Citation link] | ||||||||||||||
If you use the binding site predictions from 3DLigandSite, please also cite: | ||||||||||||||
3DLigandSite: predicting ligand-binding sites using similar structures. | ||||||||||||||
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] | ||||||||||||||
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Region: 69 - 218
Aligned: 114
Modelled: 150
Confidence: 99.6%
Identity: 32%
Fold: Bacillus chorismate mutase-like
Superfamily: Holliday junction resolvase RusA
Family: Holliday junction resolvase RusA
Region: 50 - 91
Aligned: 42
Modelled: 42
Confidence: 33.3%
Identity: 26%
PDB header:lipid binding protein
Chain: C: PDB Molecule:lipase aflb;
PDBTitle: crystal structure of aspergillus fumigatus lipase b
Region: 149 - 217
Aligned: 67
Modelled: 69
Confidence: 26.4%
Identity: 21%
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:cystatin-1;
PDBTitle: x-ray diffraction analysis of the csstefin-1
Region: 91 - 124
Aligned: 34
Modelled: 34
Confidence: 23.0%
Identity: 15%
PDB header:plant protein
Chain: B: PDB Molecule:nad+ hydrolase (nadase);
PDBTitle: cryo-em structure of plant nlr rpp1 tetramer in complex with atr1
Region: 21 - 44
Aligned: 24
Modelled: 24
Confidence: 20.0%
Identity: 63%
PDB header:dna binding protein
Chain: D: PDB Molecule:cenp-x;
PDBTitle: crystal structure of the chicken cenp-t histone fold/cenp-w/cenp-2 s/cenp-x heterotetrameric complex, crystal form i
Region: 51 - 79
Aligned: 26
Modelled: 29
Confidence: 12.7%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, alpha/beta fold family protein;
PDBTitle: crystal structure of arabidopsis thaliana dwarf14 like (atd14l)
Region: 136 - 156
Aligned: 21
Modelled: 21
Confidence: 12.4%
Identity: 24%
PDB header:laminin binding protein
Chain: A: PDB Molecule:netrin-4;
PDBTitle: netrin 4 lacking the c-terminal domain
Region: 43 - 72
Aligned: 30
Modelled: 30
Confidence: 12.0%
Identity: 30%
Fold: gpW/XkdW-like
Superfamily: Head-to-tail joining protein W, gpW
Family: Head-to-tail joining protein W, gpW
Region: 47 - 76
Aligned: 30
Modelled: 30
Confidence: 11.5%
Identity: 37%
PDB header:toxin
Chain: H: PDB Molecule:dddi;
PDBTitle: double-stranded dna-specific cytidine deaminase type vi secretion2 system effector and cognate immunity complex from burkholderia3 cenocepacia
Region: 136 - 156
Aligned: 21
Modelled: 21
Confidence: 11.3%
Identity: 48%
PDB header:protein binding
Chain: A: PDB Molecule:netrin-1;
PDBTitle: crystal structure of chicken netrin-1 (ln-le3) in complex with mouse2 dcc (fn4-5)
Region: 136 - 156
Aligned: 21
Modelled: 21
Confidence: 11.1%
Identity: 24%
PDB header:cell adhesion
Chain: A: PDB Molecule:laminin subunit beta-1;
PDBTitle: laminin beta1 ln-le1-4 structure
Region: 70 - 77
Aligned: 8
Modelled: 8
Confidence: 10.3%
Identity: 38%
PDB header:transcription/replication
Chain: F: PDB Molecule:uncharacterized protein pob3n;
PDBTitle: structure of the spt16d pob3n heterodimer
Region: 70 - 92
Aligned: 23
Modelled: 23
Confidence: 10.0%
Identity: 30%
Fold: FwdE/GAPDH domain-like
Superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family: Homoserine dehydrogenase-like
Region: 78 - 94
Aligned: 17
Modelled: 16
Confidence: 8.9%
Identity: 35%
PDB header:signaling protein
Chain: H: PDB Molecule:collagen model peptide, type i, alpha 1;
PDBTitle: crystal structure of mouse pedf in complex with heterotrimeric2 collagen model peptide.
Region: 169 - 205
Aligned: 37
Modelled: 37
Confidence: 8.8%
Identity: 24%
PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase pv003920 from plasmodium vivax
Region: 151 - 169
Aligned: 19
Modelled: 19
Confidence: 8.5%
Identity: 42%
PDB header:transcription
Chain: H: PDB Molecule:ww domain-containing transcription regulator protein 1;
PDBTitle: structure of taz-tead complex
Region: 166 - 189
Aligned: 24
Modelled: 24
Confidence: 8.4%
Identity: 25%
PDB header:hydrolase
Chain: D: PDB Molecule:recombination protein bet;
PDBTitle: crystal structure of lambda exonuclease in complex with the red beta2 c-terminal domain
Region: 78 - 93
Aligned: 16
Modelled: 16
Confidence: 7.7%
Identity: 38%
PDB header:signaling protein
Chain: G: PDB Molecule:collagen model peptide, type i, alpha 1;
PDBTitle: crystal structure of mouse pedf in complex with heterotrimeric2 collagen model peptide.
Region: 80 - 95
Aligned: 15
Modelled: 16
Confidence: 7.5%
Identity: 40%
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:high mobility group protein hmg-i/hmg-y;
PDBTitle: solution structure of a complex of the second dna binding2 domain of human hmg-i(y) bound to dna dodecamer containing3 the prdii site of the interferon-beta promoter, nmr, 354 structures
Region: 193 - 218
Aligned: 26
Modelled: 26
Confidence: 7.4%
Identity: 23%
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: DNA ligase/mRNA capping enzyme postcatalytic domain