BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (237 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX0... 200 4e-50 UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncu... 133 5e-30 UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas a... 129 6e-29 UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas p... 129 1e-28 UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJ... 128 2e-28 UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO 127 3e-28 UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3... 126 5e-28 UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli... 126 6e-28 UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans ... 126 7e-28 UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobi... 126 8e-28 UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacte... 125 1e-27 UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A... 124 2e-27 UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteoba... 123 5e-27 UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verruc... 123 5e-27 UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidami... 123 6e-27 UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q... 120 3e-26 UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN 119 5e-26 UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus ... 119 7e-26 UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminoc... 118 1e-25 UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus lichenifo... 118 2e-25 UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 116 9e-25 UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus Re... 115 1e-24 UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax... 114 3e-24 UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium p... 113 5e-24 UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Ta... 112 8e-24 UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9... 112 8e-24 UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter s... 111 2e-23 UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostri... 111 2e-23 UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus... 110 4e-23 UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcu... 109 6e-23 UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacte... 109 1e-22 UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea f... 108 2e-22 UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus ... 107 3e-22 UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Strepto... 107 4e-22 UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opituta... 107 4e-22 UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillu... 105 1e-21 UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia ... 105 1e-21 UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales R... 104 2e-21 UniRef50_C0X7X1 Possible crossover junction endodeoxyribonucleas... 104 2e-21 UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas s... 104 2e-21 UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillu... 104 3e-21 UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia... 104 3e-21 UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteri... 102 1e-20 UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collins... 102 1e-20 UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7... 101 2e-20 UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tric... 101 2e-20 UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4Z... 101 2e-20 UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q... 100 3e-20 UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Ta... 100 4e-20 UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospiri... 100 6e-20 UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes Re... 99 1e-19 UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornu... 99 1e-19 UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepI... 98 2e-19 UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB 96 7e-19 UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudona... 95 1e-18 UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A... 95 2e-18 UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD 95 2e-18 UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomacu... 95 2e-18 UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Ta... 94 5e-18 UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collins... 93 6e-18 UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Rumino... 92 1e-17 UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteri... 91 3e-17 UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidob... 90 6e-17 UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetob... 90 6e-17 UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Ta... 89 1e-16 UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella l... 89 1e-16 UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Str... 88 3e-16 UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2... 84 4e-15 UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacteri... 82 1e-14 UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=... 82 2e-14 UniRef50_C2LH12 Endodeoxyribonuclease RusA n=1 Tax=Proteus mirab... 81 2e-14 UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=... 76 9e-13 UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter h... 74 4e-12 UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum ... 71 5e-11 UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA su... 69 1e-10 UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=... 69 1e-10 UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermos... 64 3e-09 UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylo... 61 5e-08 UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synecho... 55 2e-06 UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacterac... 54 4e-06 UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscilla... 54 5e-06 UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter f... 54 6e-06 UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterob... 53 6e-06 UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease... 53 7e-06 UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobac... 52 1e-05 UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadace... 52 2e-05 UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA fa... 51 3e-05 UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 ... 51 4e-05 UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorell... 51 5e-05 UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia ... 50 6e-05 UniRef50_B3SZS6 Putative uncharacterized protein n=1 Tax=uncultu... 50 7e-05 UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis... 49 1e-04 UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis v... 48 2e-04 UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillu... 48 3e-04 UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria ... 47 3e-04 UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=N... 47 4e-04 UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA fa... 47 4e-04 UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomo... 46 0.001 UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glos... 46 0.001 UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthro... 46 0.002 UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribo... 45 0.002 UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bactero... 45 0.002 UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626... 45 0.002 UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribo... 44 0.004 UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia ... 43 0.006 UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon... 43 0.006 UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=... 43 0.011 UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichel... 42 0.014 UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=... 42 0.016 UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquat... 42 0.019 UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=... 41 0.047 UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvula... 41 0.047 UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus ... 40 0.066 >UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX08_BPMT4 Length = 213 Score = 200 bits (508), Expect = 4e-50, Method: Composition-based stats. Identities = 133/193 (68%), Positives = 157/193 (81%), Gaps = 9/193 (4%) Query: 30 EHAKAAAAELLLDMVPAESYDVLYAALSARVTYERNGGRQLRMFVPGKPAPQGSKDFMGF 89 + AK AAA+ +L M+PA++++ L AL ARVT +RNG RQLR+FVPG+PAPQGSKDF GF Sbjct: 9 DEAKLAAADAVLAMLPADAHEALREALHARVTGDRNGSRQLRLFVPGRPAPQGSKDFKGF 68 Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 K G AILKESS AVGPWRER+ALA+A A+L+ GLPVL K++ + AS+TFV Sbjct: 69 SKT---------GKAILKESSDAVGPWRERVALAAASAILAEGLPVLAKEFSIAASVTFV 119 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPG 209 MPRP+G PK TPPAVKRPDLDKLARA+LDGLTDVVW+DDSQV DLH RKVLAEL+Q PG Sbjct: 120 MPRPAGAPKRSTPPAVKRPDLDKLARAILDGLTDVVWIDDSQVVDLHCRKVLAELTQPPG 179 Query: 210 CHMRIASPGWGDE 222 H+RIASPGWGDE Sbjct: 180 AHIRIASPGWGDE 192 >UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncultured marine microorganism HF4000_APKG7N23 RepID=B3TA02_9ZZZZ Length = 145 Score = 133 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 17/153 (11%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 +++ +PGKP QG F +G ++ ++ IA + A Sbjct: 2 RIKFTLPGKPVAQGRPRFYR------------KGNFVVATDPKPSKVYKADIAYIAQKAC 49 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPK----SYTPPAVKRPDLDKLARAVLDGLTDV 184 AGL L + P+ + P P + KRPD D +A++V DGL V Sbjct: 50 EEAGLDGL-FEGPLGIQILAYFPCPKSKWRVKNPRPEEHHSKRPDADNIAKSVKDGLNGV 108 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 ++ DD Q+ +L RK +A + P + + Sbjct: 109 LYHDDGQISELIVRKRIAAQGEGPRIEVELYKM 141 >UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas aeruginosa RepID=A6V3Y0_PSEA7 Length = 149 Score = 129 bits (325), Expect = 6e-29, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 26/157 (16%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADA 127 R + VPG+P +G G + A + +A+A+ +A Sbjct: 5 RPVVFTVPGEPVGKGRPR---------IGRVGAHARMFTPAKTVA---YEGLVAMAAQEA 52 Query: 128 MLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDG 180 + L PV L P P K A + D D +AV D Sbjct: 53 LAGRSL----IAGPVLIELRMFHPIPRSWSKKRQAMALVGEVMPTVKCDADNCLKAVCDA 108 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L V W DD+QV ++ K AE+ P ++I Sbjct: 109 LNGVAWKDDTQVVNVMLAKRYAEV---PRVEVKIVPL 142 >UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KHD7_PSEPG Length = 146 Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 57/156 (36%), Gaps = 26/156 (16%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 + VPG+P +G G + IALA +AM Sbjct: 6 PVSFLVPGEPVGKGRPR---------IGKVGNHARMFTP---QKTASYEGLIALAGTEAM 53 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGL 181 L + V + V+ P K A K+PD+D + +A+ DGL Sbjct: 54 AGRTL----LEGAVMVEMRIVLAIPQSMSKKRKAMAIAGELFPTKKPDMDNVIKAIYDGL 109 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 VVW DD QV D RK E+ PG H+RI Sbjct: 110 NGVVWKDDVQVVDAFVRKRYGEV---PGVHVRIVPL 142 >UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJU5_9CAUD Length = 151 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 54/147 (36%), Positives = 80/147 (54%), Gaps = 7/147 (4%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ FVPG APQGSK+ G ++++S + PWR + + + AM Sbjct: 2 EIDFFVPGLAAPQGSKNSY----TIRNKAGKVVGVNTVEQNSKTLRPWRADVKVFAQKAM 57 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPK-SYTPPAVKRPDLDKLARAVLDGLTDVVWL 187 G + D + FVM RPSGTPK TPPAVK+PDLDKL RA+ D L V+ Sbjct: 58 QERGQQICDD--AIYLHCDFVMKRPSGTPKTRRTPPAVKKPDLDKLIRAIGDALKGTVYT 115 Query: 188 DDSQVDDLHARKVLAELSQQPGCHMRI 214 +DS++ ++ A K +AE+ + PG + + Sbjct: 116 EDSRIVEIRATKRIAEIGETPGVFIHV 142 >UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO Length = 139 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 27/155 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + +PGKP QG F + + A ++ + + Sbjct: 3 IEFTIPGKPVGQGRPRFSRHRGYVQTYD------------PAKSRQYKAIATMCAQRVYS 50 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 + P++ ++ K+PD+D + + ++D L Sbjct: 51 GE-----PLETPLKITVKAYFGLYKSYTNKRREACLSGQEVPTKKPDIDNIVKGIMDSLN 105 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 V++ DD QV L A K AE +P + + Sbjct: 106 GVIYHDDKQVIQLVAFKAYAE---KPRVEVTVEEL 137 >UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3_9ACTO Length = 228 Score = 126 bits (317), Expect = 5e-28, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 13/162 (8%) Query: 62 YERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIA 121 Y N L V G P PQGSK +G+ ++ + +++ESS V PWR+++ Sbjct: 72 YPWNTHPALTATVHGLPGPQGSKTPIGYGRSRTTG----KTIPLMRESSTKVKPWRDKVQ 127 Query: 122 LASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL 181 A+ A L P+ PV A +TF MP+P PK PD+DKL R+ D + Sbjct: 128 -AAITAALHTSAPL---AGPVYAHITFTMPKPVRAPKRRRTYPAVTPDIDKLERSTYDAI 183 Query: 182 TD-VVWLDDSQVDDLHARKVLAELS----QQPGCHMRIASPG 218 T W DD V + HARKV + QPG +R+ + G Sbjct: 184 TKAAAWKDDGCVIESHARKVYPDEHPDALDQPGALIRLYTLG 225 >UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli RepID=A8U815_9LACT Length = 145 Score = 126 bits (316), Expect = 6e-28, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 27/157 (17%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++++ VPG+P PQG F ++ +A + Sbjct: 2 EIKITVPGQPVPQGRPKFTTIGGHARAYD------------PKKSVDYKRIVAYHAMQH- 48 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGL 181 P + + + K A V +PD D A+ LD + Sbjct: 49 ----KPKQLLEGELEVEILIYKECLKSFSKRNMELAEIGQLRPVTKPDADNYAKGPLDAM 104 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 ++W DD Q+ DL ARK + +P + + + G Sbjct: 105 KGIIWKDDGQIVDLIARKYYSS---KPRIEITVRTLG 138 >UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1J2_9PROT Length = 143 Score = 126 bits (316), Expect = 7e-28, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 26/157 (16%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 + VPG P +G F RG + + + + LA+A AM Sbjct: 3 SITFTVPGTPVGKGRPKF------------ARRGKFVTTYTPEKTASYENLVKLAAAKAM 50 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGL 181 + S+ + P+ + A +PD+D + + + D + Sbjct: 51 DGRQ----PIDGAAQVSIWLWVTPPASWSQKKQRQALAHEIFPTTKPDMDNVVKGIFDAM 106 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 ++VW DD QV DL K +E ++I G Sbjct: 107 NEIVWQDDKQVIDLSCYKRYSE---TARAEVKITQIG 140 >UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G3Y0_NOVAD Length = 135 Score = 126 bits (315), Expect = 8e-28, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 24/153 (15%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 + VPG P +G F+ + + IA A++ AM Sbjct: 3 EFSFTVPGVPVGKGRPRFVKATGR--------------AYTPEKTASYESLIAYAASQAM 48 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP---PAVKRPDLDKLARAVLDGLTDVV 185 A P+ + V P P+ K +PD D + +A+ D L +V Sbjct: 49 RGAQ----PINAPIGIKVQAVFPIPASWTKKRKESAVWHTSKPDGDNILKALGDALNGIV 104 Query: 186 WLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 W DDSQV KV ++ PG H+ + + G Sbjct: 105 WADDSQVARTSIAKVYGDV---PGLHVFVEALG 134 >UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZCC2_EUBR3 Length = 149 Score = 125 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 25/159 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 +Q+R +PG+P + F + + + + L + Sbjct: 5 MKQIRFTIPGQPFGKQRPKFSRAGAYVKTY------------TPKETTSYENLVKLFYNE 52 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLD 179 A + + + + P T K K+PD D + + V D Sbjct: 53 AAKGK---MFPEGAMLDVRIIAYYEIPKSTSKKKRREMLEHRIRPTKKPDWDNIGKIVCD 109 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 L V + DDS V D RK +E P + I G Sbjct: 110 SLNLVAYHDDSAVVDAQVRKFYSE---TPRIDVMIKVVG 145 >UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A4JMI5_BURVG Length = 158 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 26/159 (16%) Query: 66 GGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 G R++ VPGKP +G F+ RGP + + + + +A+ Sbjct: 14 GARRVVFVVPGKPVAKGRPRFVR------------RGPHVRTYTPEPTERYENLVKMAAR 61 Query: 126 DAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVL 178 +AM + PVR + +P P+ + A K+PD D + +A+ Sbjct: 62 EAMRDS----EPYAGPVRLIVDIGVPIPASWSQRRQREAAAGVIGATKKPDADNVVKALK 117 Query: 179 DGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 DG+ VV+ DD QV DL K A PG + Sbjct: 118 DGMNGVVYGDDGQVVDLWVSKRYAT---TPGVRIEAIEL 153 >UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteobacteria RepID=C1D8H9_LARHH Length = 145 Score = 123 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 62/156 (39%), Gaps = 25/156 (16%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R VPG P +G + G E + IAL++ AM Sbjct: 4 VRFEVPGTPVGKGRPK--------VSTRGGKFARMYTPE---KTASYEGLIALSARQAM- 51 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLT 182 G P++D PV SL + P+ K A K+PD D + +AV DG+ Sbjct: 52 -GGRPLID--GPVDVSLMIRLAVPASWSKKKQAAALAGQVLPTKKPDADNVLKAVFDGMN 108 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 VVW+DD Q + RK A Q PG + + G Sbjct: 109 GVVWVDDVQACGVMLRKRYA---QTPGVTVVVRQMG 141 >UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C6C Length = 164 Score = 123 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 69/159 (43%), Gaps = 19/159 (11%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++L F+PG PAP GSK F+G K T+ ++ + WR + A+ + Sbjct: 2 NQRLSFFIPGVPAPGGSKRFVGIGKK-------TKRAILVDAAGQKNKDWRTAVGWAAHE 54 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY------TPPAVKRPDLDKLARAVLDG 180 L +R + TF MPRP G + RPD KLAR+ D Sbjct: 55 HFKGEVL-----TGALRVTFTFFMPRPKGHHGKRGLLPSAPAFPITRPDALKLARSTEDA 109 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 LT +VW DD+QV D +K A+ S GC + I Sbjct: 110 LTGIVWRDDAQVVDGGQKKRYAD-SCSAGCLVEIEELAS 147 >UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9K9_9FIRM Length = 135 Score = 123 bits (308), Expect = 6e-27, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 48/156 (30%), Gaps = 30/156 (19%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + V G P +G F G + I A L Sbjct: 2 IEFCVFGDPRGKGRPRFRGHAYTDS-----------------KTRAYERMI----QGAFL 40 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-------PPAVKRPDLDKLARAVLDGLT 182 +G + +K PV + P+ K +K+PD D + + V D L Sbjct: 41 QSGESMFPEKVPVGVEVECYFRIPTSYSKRRKGLCRENLELPLKKPDGDNVLKIVCDALN 100 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 + + DD+QV D+ RK +RI Sbjct: 101 GLAYKDDTQVSDMIIRKRYGRNEGY--IRVRIWEVK 134 >UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q03G49_PEDPA Length = 139 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 27/152 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R+ V G+P PQG F G G + P +++ + Sbjct: 2 IRIEVAGEPVPQGRPRFSG-----RGGFVRSYDPP-------KSKEYKKHVKEEVQQQYH 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 + + L+ P K + + D+D +AV D T Sbjct: 50 GK-----PLEGQLLVELSVYRPIQKSISKKERDMRLLGFHRPIVKGDIDNYFKAVTDACT 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRI 214 ++W+DD+Q+ K +E P M + Sbjct: 105 GLLWVDDAQIVSTKTNKYYSE---NPHVEMLV 133 >UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN Length = 145 Score = 119 bits (299), Expect = 5e-26, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 27/155 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ + P PQ F + P ++++IA + Sbjct: 2 IKFTINIPPHPQERPRFRNAGNFVQTYDPP------------KSKEYKKKIANVAKMY-- 47 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV-------KRPDLDKLARAVLDGLT 182 P P++ L F + P K++ A+ RPD+D +A+LD L Sbjct: 48 ---APGTPISTPIQIKLIFFVSIPKSKSKAWKQRALLGQEFPSVRPDIDNYVKAILDALN 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 +++ DD ++ +L A K ++L P + I Sbjct: 105 GIMFSDDGKIVELIAYKRYSDL---PRTEVSITEL 136 >UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM18_PEDAC Length = 146 Score = 119 bits (298), Expect = 7e-26, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 27/152 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R+ VPG+P PQG F G G + P +++++A A D Sbjct: 2 IRIEVPGEPVPQGRPRFSG-----RGGFVRSYDPP-------KSREYKKKVAAAVKDQYH 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 Y V L+ P K V + D+D +AV D T Sbjct: 50 GD-----PVDYAVHVQLSIYRPIQKSLSKKEREMRLLGFHRPVVKGDIDNYFKAVTDACT 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRI 214 ++W+DD+Q+ K +E P M + Sbjct: 105 GLLWVDDAQIVSTKTNKYYSE---DPHVEMLV 133 >UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3R6_RUMGN Length = 136 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 27/154 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + + +PGKP + F + + + + +A ++ Sbjct: 1 MVITIPGKPVGKARPRFRRAGFKV------------ITYTPPENKKYEKEVARIYKQSIG 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVK-------RPDLDKLARAVLDGLT 182 VL P+R + P P K A+K +PDLD +A+ +LDGL Sbjct: 49 -----VLYTDIPLRVRILAKFPIPESWSKKNKEKALKGEIKPNKKPDLDNIAKIILDGLN 103 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 V + DD QV L KV ++ +P + IA Sbjct: 104 GVAYTDDKQVTSLEIEKVYSD---EPCVVVYIAE 134 >UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65KQ9_BACLD Length = 140 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 19/146 (13%) Query: 88 GFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLT 147 P G+ T + +++ +++ I L + M L P + Sbjct: 5 NIPVEPMGAVRMTGRGKFVNKNAQRYLAYKDFIKLHAQKQMKGQQL----YTGPTVVKVL 60 Query: 148 FVMPRPSGTPKSYTPP-----AVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLA 202 F MP P K +K+PD+D L + V D L W DD+QV + KV Sbjct: 61 FSMPIPKSWSKKKQQEAISTVHIKKPDIDNLVKGVFDALNKTAWHDDNQVFMVIGAKVY- 119 Query: 203 ELSQQPGCHMRIASPGWGDEAIAAWQ 228 ++PG ++I G +A W+ Sbjct: 120 --GKEPGIEVQI--MG-----LAEWE 136 >UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 Length = 139 Score = 116 bits (289), Expect = 9e-25, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 48/156 (30%), Gaps = 30/156 (19%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G+P + F K + + E I + Sbjct: 6 KVNFTIYGEPVGKERPRFNLATKR--------------TYTPNKTKSYEELIKWLYQSKV 51 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGL 181 + ++ +L K K+PD+D + + V D L Sbjct: 52 KHY------FEGYIKMTLRCYYSIAKSNSKKIKEQKRNNVLRPSKKPDIDNVIKVVADSL 105 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 + + DD+Q+ ++ A K ++ +P + + Sbjct: 106 NGIAYKDDTQIVEVVASKYYSD---KPRVEVILEDI 138 >UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus RepID=YQAN_BACSU Length = 142 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 29/157 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ V G+P QG + R P A +++ +AL ++ Sbjct: 4 IKFTVYGEPVAQGRPR-----GSIRNGKVHMRDP-------AKSKYFKQYVALVASQH-- 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP---------PAVKRPDLDKLARAVLDG 180 P PV + P P S +PD+D + V D Sbjct: 50 ---RPETIITGPVSMDVKVYRPMPKSVSNSKKKKEKAEKGLLRPTTKPDVDNYVKGVKDA 106 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L +++ DDSQV DL K +E +P + I Sbjct: 107 LNHLIYKDDSQVVDLKVSKFYSE---EPRVEVMIREV 140 >UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4F4F8 Length = 171 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 11/161 (6%) Query: 62 YERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIA 121 Y+ + L + V G PQGSK +G+ ++ + + ++KESSA V PWR++++ Sbjct: 12 YDWDPVPALAIAVYGTAGPQGSKSPVGWGRSRKTG----KNIPLMKESSAKVKPWRDKVS 67 Query: 122 LASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL 181 A A+L L V A +TF M +P PK PD+DKL RA D + Sbjct: 68 AAITAAILRGDAKPLH--GAVYAEITFTMAKPGSRPKRRRTYPAVSPDIDKLERATYDAI 125 Query: 182 TDV-VWLDDSQVDDLHARKVL----AELSQQPGCHMRIASP 217 T W DD +V + H RKV + QPG +R+ + Sbjct: 126 TTAKAWEDDGRVIENHNRKVYPGEHPDALDQPGAVIRLYTL 166 >UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IDV7_9CLOT Length = 158 Score = 113 bits (282), Expect = 5e-24, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 45/164 (27%), Gaps = 37/164 (22%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ +PG+P +G + + + ++ Sbjct: 16 IKLTIPGEPCAKGRPR----------------VGKFGTYTPEKTLNYETLVKELY---II 56 Query: 130 SAGLPVLDKKYPVRASLTFVMP---RPSGTPKSYTP------------PAVKRPDLDKLA 174 L + + F +P P K+PD D + Sbjct: 57 QHANKKLQGQLKIDIKAYFKIPQGEIPKAKKPKPQTLQRYNDILNGKIRHTKKPDWDNVG 116 Query: 175 RAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 + + D L + + DDSQ+ K + P + I+ Sbjct: 117 KIISDALNGLAYDDDSQIVSAIVEKFYSN---DPRVEVEISEVA 157 >UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Tax=Corynebacterium jeikeium ATCC 43734 RepID=C8RQI5_CORJE Length = 143 Score = 112 bits (281), Expect = 8e-24, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 66/147 (44%), Gaps = 17/147 (11%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 L FVPG APQGSK+ +L ESS V PWR+ ++ + Sbjct: 8 LTFFVPGIAAPQGSKNAYR-----------RGQKIVLVESSKKVKPWRDTVSQVARFVCK 56 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 V ++ FVMPR PP V++PDLDK+ RAV D LT + + DD Sbjct: 57 R------PIDGAVTVAVHFVMPRTKAMRDKPAPPMVQKPDLDKMLRAVNDALTGIAYADD 110 Query: 190 SQVDDLHARKVLAELSQQPGCHMRIAS 216 SQ+ L K A ++ G H+ I Sbjct: 111 SQIVRLTGSKRRAAPGEKTGAHITITP 137 >UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9_CLOBH Length = 133 Score = 112 bits (281), Expect = 8e-24, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 43/154 (27%), Gaps = 29/154 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ + GKP + F + + + L Sbjct: 1 MKIVIDGKPMGKQRPRFNS--------------KTGNTYTPDKTVNYENWVKLCYQQQCK 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 L V A + P T K +PD+D +A+ +LD L Sbjct: 47 GEKL-----TGEVVAFINAYYVIPKSTSKKNKKDMLAGIIRPTIKPDVDNIAKVILDSLN 101 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 + + DD Q+ K E P + + Sbjct: 102 GLAYKDDKQIVFCAISKWYGE---NPRVEVILEE 132 >UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter sphaeroides ATCC 17029 RepID=A3PHF9_RHOS1 Length = 144 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 13/151 (8%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 G P + + + A P + ++ S ++ + PV + Sbjct: 2 VSFVIPGKPFAKQRHNFSRATGRAFTP-KATVSFESTVRDIALPKFPRPLEGPVSIRIEA 60 Query: 149 VMPRPSGTPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAE 203 PK P ++PDLD + +++LDGL + + DDSQV + K Sbjct: 61 TFVPAPSWPKKRRLACLGQPHTQKPDLDNVEKSILDGLNRIAFADDSQVARVVKEKRWGP 120 Query: 204 LSQQPGCHMRIASPGWGDEAIAAWQAANGGA 234 ++Q + + G + +WQAA A Sbjct: 121 VAQT---VVVVEPLG----PLPSWQAAEAVA 144 >UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P3C6_9CLOT Length = 144 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 24/161 (14%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 +R VPG P + K GT + + I Sbjct: 1 METVRFTVPGAPKGKAR------AKTVRSKKGGTF-----SYTPEGTMLYENLIKCCYRQ 49 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLD 179 + + + P++ ++ P T K K+PD+D +A+++LD Sbjct: 50 ---ESNNIIFNDGQPLKVTIIAYYPIVKSTSKKKKQQMLEDLMFPTKKPDIDNIAKSILD 106 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWG 220 L + + DD+QV LH K AE P + I G Sbjct: 107 ALNKLAYRDDTQVVTLHMEKHYAE---DPRVEVEIEEIKNG 144 >UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus RepID=B3XS14_LACRE Length = 149 Score = 110 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 27/155 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ +P Q +K V +++++ + Sbjct: 1 MKIIFNIEPVEQARPRATKTRKGIRLYD------------PKKVSTYKKQLGMMCKFQYK 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 P+ SL F S T K V +PD D ++ LDGL Sbjct: 49 DK-----PLDGPLIVSLKFYRHIQSSTSKKERELRITGAHRPVVKPDTDNYIKSTLDGLN 103 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 ++W DD+Q+ + A K ++ P + + Sbjct: 104 GLLWEDDNQIVKIVAEKYYSDR---PRIEIEVERL 135 >UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcus pneumoniae RepID=C1CGH5_STRZJ Length = 143 Score = 109 bits (273), Expect = 6e-23, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 28/159 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ + +P PQ F RG + WR L A Sbjct: 1 MKLTLNIEPKPQSRPRF------------ARRGSFTTTYEDKDMKTWRNHCQLLI--ANQ 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPS--GTPKSYTP-------PAVKRPDLDKLARAVLDG 180 G P+L + +R L F + P K P K+PD+D +A+ D Sbjct: 47 YMGQPIL--EGALRTRLRFYIKPPQYISKVKKNQQALLDEIIPVGKKPDIDNYEKALYDS 104 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 ++ +V+ DD Q+ K + P + I Sbjct: 105 MSGIVFQDDGQIALHDVGKFYS---LNPRIEVEIEVMKS 140 >UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCV3_9FIRM Length = 143 Score = 109 bits (271), Expect = 1e-22, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 28/155 (18%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 VPGKP + + G + + + + AM Sbjct: 3 TFSFTVPGKPFGKQRPKA---------TRRGVHASVYTPKETV---NYENLV-----VAM 45 Query: 129 LSAGLPV-LDKKYPVRASLTFVMPRPSGTPKSYTPPAVK-------RPDLDKLARAVLDG 180 P+ VR ++ P K + +PDLD + + + D Sbjct: 46 FKQKYPLDKPIDGEVRGTIRAFYQIPQSKSKKVKERMLNGEIKPMVKPDLDNIQKVIYDA 105 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIA 215 L + + DDS + + K +++ P + I Sbjct: 106 LNGIAYTDDSHIIAMRCAKFYSDV---PRVEVLIE 137 >UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G1B4_9FIRM Length = 155 Score = 108 bits (269), Expect = 2e-22, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 27/162 (16%) Query: 64 RNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 R G + + VPGKP + K G + P ++ + Sbjct: 9 RAGMQSVTFQVPGKPQGKAR------AKTVRNKSTGNI---------HSYTPEKDMLYEN 53 Query: 124 SADAMLSAGLP--VLDKKYPVRASLTFVMPRPSGTPKSY-------TPPAVKRPDLDKLA 174 A L++ PV + P K +K+PD+D + Sbjct: 54 YIKAQFQNRANGFYLERGKPVMLRIIARFLPPKSVSKKRQLDMLEGRELPLKKPDIDNIV 113 Query: 175 RAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 + V D L V + DD+Q+ + A K + + G + + Sbjct: 114 KVVADALNGVAYHDDTQIAMVIAAKTYSAME---GLDITVEE 152 >UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM15_PEDAC Length = 148 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 19/146 (13%) Query: 83 SKDFMGFKKAPEGSPPGTRGPAILKESSA----AVGPWRERIALASADAMLSAGLPVLDK 138 + K +G P P + ++ A +++R L + Sbjct: 11 RRCPQVIKLVIDGEPVAASRPRVTRKGWAYIAPKYKAYKDRTHLIVKNQYKGE-----PL 65 Query: 139 KYPVRASLTFVMPRPSGTPKSYTPPAVK-------RPDLDKLARAVLDGLTDVVWLDDSQ 191 ++ TF K+ + +PD+D L +AV D T VVW DD+Q Sbjct: 66 MGALKVKTTFYRSVQKSVSKAERNRRLSNEHRPIFKPDIDNLFKAVTDACTGVVWHDDNQ 125 Query: 192 VDDLHARKVLAELSQQPGCHMRIASP 217 + + K+ AE +P M + Sbjct: 126 IVSVEMDKMYAE---EPRVEMEVHEL 148 >UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Streptococcus phage M102 RepID=A7DYE2_9CAUD Length = 145 Score = 107 bits (266), Expect = 4e-22, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 28/156 (17%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 ++ + +P Q F + + + WR + + +A + Sbjct: 5 KIVINLEPKAQSRPRFARCGRGV------------VAYEKKEMRVWRAKCSELIEEAFRA 52 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV---------KRPDLDKLARAVLDGL 181 L + P++ +TF + P K+PD+D +A+LD + Sbjct: 53 EEL----MEGPLKIDVTFYILPPKYISSKKKLKEKLEAEEIFCDKKPDVDNYLKALLDSM 108 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 T V++ DD QV + ARK+ + +P I Sbjct: 109 TGVIFKDDGQVVECRARKLYS---LKPRIEFEIKEM 141 >UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6N6_9BACT Length = 154 Score = 107 bits (266), Expect = 4e-22, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 60/163 (36%), Gaps = 26/163 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + + FV G P +G F + A E W+ RIA+A+ Sbjct: 2 NKPIVFFVSGDP--KGQPRPRAFARRVGNKFVARVFDAGTAEG------WKSRIAVAAKS 53 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVK----------RPDLDKLARA 176 P PVR L F PRP ++ + +PD D LA+A Sbjct: 54 L-----TPAQPYTDPVRVRLHFFFPRPKAHFRTGKNAHLMRDDAPSYHIAKPDCDNLAKA 108 Query: 177 VLDGLT--DVVWLDDSQVDDLHARKVL-AELSQQPGCHMRIAS 216 VLD +T W DD QV L K + + PG ++ ++ Sbjct: 109 VLDAMTQLGGWWGDDQQVASLAVCKSYVSTIQLHPGVNISVSQ 151 >UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillus jensenii SJ-7A-US RepID=D0DND1_9LACO Length = 135 Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 25/154 (16%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + GKP + + + ++A +++ A Sbjct: 2 EISFSIDGKPFGKERPRPNRTGHGV--------------YTPERTKMYEYKVAQSASLAF 47 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-----PAVKRPDLDKLARAVLDGLTD 183 LD V S F + + K + PD D +A+AVLDG+ Sbjct: 48 FDE---PLDSDIRVCISAYFGVAKSDSKRKKQAKISGEIRPARTPDADNIAKAVLDGMNG 104 Query: 184 VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 VV+ DD QV +L K AE +P + + Sbjct: 105 VVYKDDKQVIELKVTKQYAE---KPRVDVSVEEI 135 >UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JU78_BURP8 Length = 180 Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 17/144 (11%) Query: 84 KDFMGFKKAPEGSPPGTRGPAILK---ESSAAVGPWRERIALASADAMLSAGLPVLDKKY 140 EG P G + + + + + + AM A P D Sbjct: 19 PATYRVSFTVEGVPVGKARARVTRNGTYTPKKTRRYEHDVRTVAMQAM-GALRPCRD--- 74 Query: 141 PVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLTDVVWLDDSQVD 193 V SL +P P K+ A V RPDLD +AV D L VV+ DDSQ+ Sbjct: 75 AVHVSLVVFLPVPERFSKAKRAAALAGLVYPVVRPDLDNFEKAVTDALNGVVYHDDSQIC 134 Query: 194 DLHARKVLAELSQQPGCHMRIASP 217 D+ K ++ P + AS Sbjct: 135 DVVKSKRYSDR---PRVVIECASI 155 >UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales RepID=B1M2L8_METRJ Length = 152 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 23/158 (14%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 L + +PG P +G + I + + LA+ Sbjct: 2 SETLIIRLPGAPRGKGRHRAQLVHRG--------GVARIHSHPDQKTEAYESALRLAAGA 53 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKS-------YTPPAVKRPDLDKLARAVLD 179 M L P+ + MP P+ K +PD D +A+ V D Sbjct: 54 VMRGRAL----LTGPLEVRIFATMPIPASWSKRKRLDAIERRLRPTTKPDWDNIAK-VSD 108 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L VVW DD+ V D RK E P +++ + Sbjct: 109 ALNHVVWADDASVVDGLVRKFYGE---TPELVIQVTAL 143 >UniRef50_C0X7X1 Possible crossover junction endodeoxyribonuclease RusA n=37 Tax=root RepID=C0X7X1_ENTFA Length = 144 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 29/160 (18%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++R+ +P +P PQ F A G+ T + ++ V + Sbjct: 1 MEEMRIILPIEPKPQSRPRF-----ARRGNYVQTYEDSAMRAYKQKVKVY---------- 45 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGT-PKSYTPPAVK--------RPDLDKLARAV 177 L P L +K P+ A +TF + P VK +PDLD +AV Sbjct: 46 --LRKAKPKLIEKGPIMAHVTFYVQAPKSALSNKQKRLDVKLERKYCDKKPDLDNYFKAV 103 Query: 178 LDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 D +++ +D Q+ + +K+ + + + I S Sbjct: 104 TDAAEGILYKNDGQIAVMVCQKLYSMRQRT---EIEIMSL 140 >UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LU68_9FIRM Length = 140 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 49/155 (31%), Gaps = 28/155 (18%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 V G P QG F +G P A ++ + + +A Sbjct: 5 TAVVLGDPVAQGRPRFSR-----QGGFVKAYDP-------AKSRDYKSYVRMIAAQH--- 49 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLTD 183 PV + + SL P G PK A V +PD+ + + V D L Sbjct: 50 --APVTPVEGAIEFSLRIYRAIPKGMPKYKREAAKEGRLRPVTKPDVSNVLKGVEDALKG 107 Query: 184 VVWLDDSQVDDLHA-RKVLAELSQQPGCHMRIASP 217 V + DDSQ+ K E P + + Sbjct: 108 VWYKDDSQIVGYGVLGKWYDER---PRIEIMMREL 139 >UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillus crispatus RepID=C7Y630_9LACO Length = 161 Score = 104 bits (259), Expect = 3e-21, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 44/175 (25%), Gaps = 42/175 (24%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +PG+P + + + A + + + + A Sbjct: 6 IKFVIPGEPQSKERPRTVRRAGGVRTY------------TPAKTHRYEDIVRYFAVYA-R 52 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 S+ P K K+PD D +A+ + DG+ Sbjct: 53 KEHKISEPINSQCGVSIKAYFGIPKSFSKKRRELCLKGKERPTKKPDSDNIAKIIFDGMN 112 Query: 183 ----------------DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGD 221 D + DD + K + P + + W D Sbjct: 113 PKMKLNKALHKKMVLQDGFYEDDKLIVTHSVEKWYS---MHPHVEVTVT---WED 161 >UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia pseudomallei Pasteur 52237 RepID=A8HKV5_BURPS Length = 166 Score = 104 bits (258), Expect = 3e-21, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 30/172 (17%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++ + +P +G + + + ++A + Sbjct: 2 NGEVHITLPFAAIGKGRPRVY----------------RGIASTPPKTRAYEHQVATLARA 45 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV-------KRPDLDKLARAVLD 179 AM L P+R + + P PK A+ +PD+D A+A+LD Sbjct: 46 AMRGR----LPFDGPIRVLIEIDVEIPKTWPKYRRADALAGRVWPSVKPDIDNCAKAILD 101 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAAWQAAN 231 G+ + + DD+Q+ K A +Q + + +A + AN Sbjct: 102 GMNGIAYRDDTQIVIALLSKRYASDAQ---VRIAVEEIAGQTAQKSAQRRAN 150 >UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteriaceae RepID=A4WB46_ENT38 Length = 151 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 10/133 (7%) Query: 79 APQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDK 138 P + F F + + P + A W++R + A + + Sbjct: 12 IPPNHRAFPAFPRVVQIMKVYNILPMGKPRMTRADK-WKKRPEVMRYRAFCDHVRLLGVE 70 Query: 139 KYPVRASLTFVMPRPSGTPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVD 193 + +TF++P P K P +PD D L +A++D + + DD+ + Sbjct: 71 LPEANSHVTFILPMPQSWSKKKRLEYNGKPHQGKPDFDNLMKALMDAI----FEDDAHIW 126 Query: 194 DLHARKVLAELSQ 206 D K+ E + Sbjct: 127 DARVTKLWGEEGK 139 >UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7B8_9ACTN Length = 125 Score = 102 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 6/112 (5%) Query: 117 RERIALASADAMLSAGLPV----LDKKYPVRASLTFVMPRPSGTPKSY-TPPAVKRPDLD 171 I A+ DAM A + + PV + P P PK + P +PD D Sbjct: 11 EAAIRDAALDAMREAYPELEGLLFPFRVPVAVRIDVYEPLPKSRPKRTVSEPNTFKPDAD 70 Query: 172 KLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEA 223 +A+ V+DG+ VVW DDSQV ++H K +P +++ GW D A Sbjct: 71 NIAKLVMDGMNGVVWGDDSQVAEVHVVKWPRRRGIEPHMDIQVYR-GWADPA 121 >UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7_STAAE Length = 135 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 10/127 (7%) Query: 96 SPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG 155 +P G+ P + + V + A + A + +P L+ + ++ L F P Sbjct: 13 APMGSPRPRF-RNTGRFVQTYMPT-AYTNHKAYIQGQMPKLNLERALKIELDFYFPLLKS 70 Query: 156 TPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGC 210 K V +PD+D L + VLD VW DD+Q+ ++ + K +P Sbjct: 71 WSKKKKSEMVGQYKVTKPDIDNLIKTVLDACNGHVWKDDNQITEITSSKRY---GLEPKI 127 Query: 211 HMRIASP 217 MR+ Sbjct: 128 IMRVEEV 134 >UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FRX1_PHATR Length = 386 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 22/163 (13%) Query: 65 NGGRQLRMFVPGKPAPQGSKD-FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 N ++ V G P P GF P + + S V +R+ + L Sbjct: 203 NVTGRVAFTVRGNPLPLRRHRTARGFVYNPSAKAQESFRDIV----SHMVTGFRDELHLL 258 Query: 124 SADAM-LSAGLPVLDKKYPVRASLTFVMPRPSGT-------------PKSYTPPAVKRP- 168 + ++AG+P + + ++ F M RP+ T P+V P Sbjct: 259 KGTHLPIAAGVPFFPEGQALVMTILFSMKRPNNHFVANRRGMLEDGCRLKATAPSVTSPT 318 Query: 169 --DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPG 209 D+D LA+ VLD +++ DD QV LH KVL E G Sbjct: 319 RTDVDNLAKFVLDSCNGLLYEDDRQVISLHVTKVLDEQGTCLG 361 >UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4ZC15_9CAUD Length = 138 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 29/143 (20%) Query: 76 GKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPV 135 G P F G +P ++ LP Sbjct: 18 GNPKGSSRPRFSGGGHTYMPAP------------------------YVKHKKFVADQLPH 53 Query: 136 LDKKYPVRASLTFVMPRPSGTPKSYTP-----PAVKRPDLDKLARAVLDGLTDVVWLDDS 190 L P+R ++ F PK P +PD+D L + +LD +++W+DD+ Sbjct: 54 LMIDKPIRLTVEFYFKPSKSWPKYKKEACIGNPHTIKPDIDNLLKTILDAGNNLLWVDDT 113 Query: 191 QVDDLHARKVLAELSQQPGCHMR 213 + ++ K AE ++ + Sbjct: 114 LIYEIRTFKKYAETARTVLTIIE 136 >UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q044S5_LACGA Length = 153 Score = 100 bits (250), Expect = 3e-20, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 46/171 (26%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G P + + + A + + + + ++ Sbjct: 2 RVNFTIEGPPIGKARPR----------------VTRTVTYTPAKTARYEDLVRYTAINSF 45 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-------PPAVKRPDLDKLARAVLDGL 181 + DK P+ + P K K+PD D + + ++DG+ Sbjct: 46 KG----IFDKDEPLDVKIMAYFEVPKSLSKKRKALCLANQELPTKKPDADNVGKIIMDGM 101 Query: 182 T----------------DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 V+ DD QV L +K AE + +RI Sbjct: 102 NPKMRRDKRLHKMVEVMRGVYHDDKQVTTLLVKKRYAERA---RVDVRIKR 149 >UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Tax=Lactobacillaceae RepID=C7TBL4_LACRG Length = 113 Score = 100 bits (249), Expect = 4e-20, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 16/121 (13%) Query: 104 AILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG-------T 156 +++ + +++ L + P+R S+ Sbjct: 1 MGHAYDPTKSRNYKQHVKSVASE------LNIEPLSGPIRVSMEIYRQLQKSGSKALIRR 54 Query: 157 PKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 K +PD+D ++V D LT ++W DD+Q+ ++H K ++ QP + Sbjct: 55 KKEGKVRPTVKPDVDNYYKSVSDALTGILWEDDNQIVEIHVGKWYSD---QPRVEIEAEE 111 Query: 217 P 217 Sbjct: 112 I 112 >UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Y8_MAGSA Length = 134 Score = 99.8 bits (247), Expect = 6e-20, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 27/150 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + + +PG+ +G + + A IA + DAM Sbjct: 3 VVVTIPGEVTGKGRPRIWNGRAV----------------TPAKTRSKEGVIASLAMDAMG 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLT 182 PV ++ V+P + K A K+PDLD + + VLD + Sbjct: 47 GCD----PLTGPVLVTIEAVLPVATSWSKKRRAAALDGTEQPTKKPDLDNVVKLVLDAVN 102 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHM 212 +V+ DD+Q+ + A K +Q + Sbjct: 103 GIVFADDAQITHIIASKRYGVFAQTTLTVV 132 >UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes RepID=C2E9I5_9LACO Length = 159 Score = 98.7 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 6/134 (4%) Query: 85 DFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRA 144 F + + + + P + + A L P P+R Sbjct: 22 TFFVALEDVPTCTHQQKKVRVNRGIPIFYEPEKLKKTRALLMERLDEHKPDEPMHGPLRL 81 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAE 203 +T+ + +PD+D + + + D +T + W DD V L + K A+ Sbjct: 82 VVTWCFKKKGKHVDG--EYKTTKPDVDNMLKLLQDCMTRLGFWDDDRFVVSLISEKYWAD 139 Query: 204 LSQQPGCHMRIASP 217 + PG ++ I Sbjct: 140 V---PGIYIEIKEM 150 >UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7S400_PHATR Length = 157 Score = 98.7 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 33/164 (20%) Query: 64 RNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 R+ GR + +++ GKP P + +P LKE S Sbjct: 10 RDTGRPIDVYIEGKPIPMPRPR---LGRGIWFNP----ATRQLKEFSKK----------- 51 Query: 124 SADAMLSAGLPVLDKKYPVRASLTFVMPRPSG-----------TPKSYTPPAVKRPDLDK 172 A+L V + + +L F + RP+ P P +PD+D Sbjct: 52 -LQALLPEDGVVFPRGECLEVNLFFYIRRPNSDYDGNKRINALKPGRANPFETVKPDIDN 110 Query: 173 LARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 LA+ LD + +V+ DDSQV L K+ G +++ + Sbjct: 111 LAKFTLDAMQGIVFHDDSQVVKLLVYKLRGNEG---GTRIKVRT 151 >UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepID=B8I135_CLOCE Length = 136 Score = 98.3 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 6/133 (4%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 F K + ++ P + + A A A L+ +P PVR Sbjct: 8 FFLPMKKVPTVTHQEKQVKVVNGKPVFYEPDKLKAARAKLQAHLAKYVPDKPYTGPVRLM 67 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAEL 204 + + P +PD D L + + D +TD+ W DD+ V K AE+ Sbjct: 68 VKWCFPVTGKHKNG--EYKTSKPDTDNLQKLLKDVMTDLRFWKDDALVASEIVEKFWAEV 125 Query: 205 SQQPGCHMRIASP 217 PG + I Sbjct: 126 ---PGIFIAIEEL 135 >UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB Length = 137 Score = 96.4 bits (238), Expect = 7e-19, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 6/133 (4%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 F + + ++ P + A ++L+ +P P+R + Sbjct: 10 FFLPMDKIPTTTHQQKKVTVINGKPHFYEPESLKNARDKFTSLLAQHVPPSKLDGPIRLT 69 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAEL 204 + ++ P+ G+ +PD D L + + D +T++ W DD+QV K A+ Sbjct: 70 VKWLFPKIKGSTNG--QYKTTKPDTDNLQKLLKDCMTELGFWNDDAQVASEIIEKFWAD- 126 Query: 205 SQQPGCHMRIASP 217 G ++++ Sbjct: 127 --TVGIYVKVEEL 137 >UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C2M4_THAPS Length = 243 Score = 95.2 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 23/167 (13%) Query: 67 GRQLRMFVPGKPAPQGSKDF-MGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 + ++ + G P P GF P + ++L P + Sbjct: 75 TKGIKFTIRGNPKPLVRHRSSRGFMYNPSSAAQERFRDSLLSMLPRRYHP-----TILDD 129 Query: 126 DAMLSAGLPVLDKKYP----VRASLTFVMPRPSGTPKSYTP------------PAVKRPD 169 +M V + + + +TF + RP P R D Sbjct: 130 QSMDDGKAAVPNVLFSQHEFLAMEVTFRLKRPKNHFVGNKPGTGRMKPTAPGKFHNSRTD 189 Query: 170 LDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGC-HMRIA 215 +D L + V+D L ++++DD QV L A K+L G ++I Sbjct: 190 IDNLTKFVMDSLNGLLYVDDKQVVSLSAIKLLDSEGLCEGATDVKIT 236 >UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A6QIJ7_STAAE Length = 138 Score = 95.2 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 10/127 (7%) Query: 96 SPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG 155 +P G+ P + L +P L+ + ++ L F P Sbjct: 17 APMGSPRPRF-STKGRYAHTYMPT-KYTEHKKYLQNQMPKLNLENALKIELEFYFTPPKS 74 Query: 156 TPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGC 210 K V +PD+D L + VLD + +W DD+Q+ ++ + K +P Sbjct: 75 WSKKKKTQAIGQLKVTKPDIDNLMKTVLDACNNYLWKDDNQIAEITSSKRY---GIEPKI 131 Query: 211 HMRIASP 217 +RI Sbjct: 132 IIRIEEI 138 >UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD Length = 146 Score = 95.2 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 43/168 (25%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +P +P PQ F + A E WR+++ + Sbjct: 2 VKFTIPIEPKPQKRPRFSRWSGAYEDKDMMA---------------WRKQVTDYVKNNYE 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV------------------KRPDLD 171 P D ++ +TF + P K + A K+PDLD Sbjct: 47 G---PYFDDG--LKVDVTFYLKAPELVSKKPSERARDKTKQKYQDYINELLYVPKKPDLD 101 Query: 172 KLARAVLDGLTD--VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L +AV D ++ VVW DD+ + + RK+ + P ++I Sbjct: 102 NLEKAVYDSISKSEVVWTDDNIIVEHTTRKLYS---PNPRIEVKINEL 146 >UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1U6_DESRM Length = 114 Score = 94.8 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 44/149 (29%), Gaps = 37/149 (24%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + VPG+P P+ G G ++ + + L +++ Sbjct: 1 MHFTVPGRPVPKYRPR------------VGKHGNIYTPQN---CREYERTVGLYASNVF- 44 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 PV + F R G DLD +A+ DGL + W DD Sbjct: 45 -----PQPLTGPVTLGVKFYFSRRPG-------------DLDNYVKAISDGLNGIAWQDD 86 Query: 190 SQVDDLHARKVLAELSQQPGCHMRIASPG 218 QV L A + + G Sbjct: 87 RQVVKLFASLKRGSPE---RAEVVVQRIG 112 >UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Tax=Clostridium RepID=Q0TSJ9_CLOP1 Length = 128 Score = 93.7 bits (231), Expect = 5e-18, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 10/123 (8%) Query: 92 APEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMP 151 G G P + + A P ++ I + ++A + Sbjct: 3 VVTGKIRGKARPRVCR--GHAFTP-KDTIEYEKLVRECYKKQDGRYLEGAIKALIIAYYK 59 Query: 152 RPSGTPKSY-------TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAEL 204 P K K+PD D + + +LD L V + DDSQ+ DL +K E Sbjct: 60 IPKSYTKKRVQVIRDGLEKPTKKPDADNIGKVILDSLNGVAYKDDSQIIDLRIKKEYTEE 119 Query: 205 SQQ 207 ++ Sbjct: 120 LER 122 >UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8E1_9ACTN Length = 152 Score = 93.3 bits (230), Expect = 6e-18, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 8/119 (6%) Query: 94 EGSPPGTRGPAILKESSAAVGPWRERIALASA--DAMLSAGLPVLDKKYPVRASLTFVMP 151 G P + S P + + A + + + +G + PV + + Sbjct: 17 PAEIVGKGRPRFTR-SGRTYTPRKTKRAELAIRDEFLRVSGDRWAKFRGPVSVHIIYGRE 75 Query: 152 RPSGTPKSYTPPA-VKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPG 209 PK + A +PDLD + VLD L + ++DDSQV ++ K +++PG Sbjct: 76 LAKSNPKFWAGRADTGKPDLDNCGKLVLDALNGIAFMDDSQVVNMTIAK----SARRPG 130 >UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3762E Length = 131 Score = 92.1 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 6/131 (4%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 F + + A A LS P ++ + Sbjct: 5 FMNMIPPTSTQQERGCTIINGKRKYYDRGNSDAHQKLKAYLSQHRPGAPLTGALQVVTKW 64 Query: 149 VMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQ 207 P + P +PD D L +A D +T++ W DD Q+ K A Q+ Sbjct: 65 CFPIKAKHHDG--EPYTNKPDADNLCKAFYDIMTELGYWKDDKQIYSSITEKFWA---QR 119 Query: 208 PGCHMRIASPG 218 PG +++I Sbjct: 120 PGIYVKIEEVK 130 >UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteriaceae RepID=A4W6Z5_ENT38 Length = 119 Score = 91.0 bits (224), Expect = 3e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 10/116 (8%) Query: 96 SPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG 155 P + A W+ R A+ A A +TFVMP P+ Sbjct: 1 MRTYDITPLGKPRMTRADK-WKTRPAVMRYRAFCDEARLRRIHLPESGAHVTFVMPMPTS 59 Query: 156 TPKSYTP-----PAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 K P +PD D + +A++D L + DDS V D K+ E Q Sbjct: 60 WSKKKREQFDGKPHQSKPDCDNMLKALMDAL----FDDDSSVWDCRITKLWGEKGQ 111 >UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A2M1_BIFAD Length = 173 Score = 90.2 bits (222), Expect = 6e-17, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 43/153 (28%), Gaps = 44/153 (28%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 +PG+P +G F G++ + E + M Sbjct: 7 DFDIPGEPVAKGRPRFYGYRAV----------------TPQHTRDAEELVRN--QFHMFY 48 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDS 190 LD V L F R +PDLD L + V D L + ++DD Sbjct: 49 PHAEPLDGD--VMMILMFYKGRH------------GKPDLDNLEKLVKDALNGLAYVDDQ 94 Query: 191 QVDDLHARKVLAELSQQPGCHMRIASPGWGDEA 223 QV + + WG A Sbjct: 95 QVKLTLCAMLEPD------------RMAWGQRA 115 >UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetobacter pasteurianus RepID=C7JFF8_ACEP3 Length = 151 Score = 89.8 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 9/113 (7%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 ++ G P + + A+ G P L P+ SL Sbjct: 40 YRLTIPGLLRAKGRPRFGNGRTFTYAKTVQAEKHIQRHAIEQIGKPCL--TGPLHVSLMI 97 Query: 149 VMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLTDVVWLDDSQVDD 194 + P + T A RPD+D + D L + W DD+Q+ D Sbjct: 98 NIAPPPSWSRKKTADALAGRILPTSRPDIDNQMKTAADALNGIAWKDDAQIVD 150 >UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BFH9_CLOPE Length = 131 Score = 89.1 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 12/133 (9%) Query: 92 APEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMP 151 G G P + + A P ++ + + ++ + Sbjct: 4 VVTGKIRGKARPRVCR--GHAFTP-KDTVQYEKLVRDCYQEQDGRYLEGSIKVLIVAYYK 60 Query: 152 RPSGTPKSY-------TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAEL 204 P K K+PD D + + +LD L + + DD+ V D K E Sbjct: 61 IPKSYSKKRVQAIRDGLEKPRKKPDADNIGKIILDSLNGIAYKDDAYVADFRVIKEYTEE 120 Query: 205 SQQPGCHMRIASP 217 + ++ Sbjct: 121 LE--RVEFELSEV 131 >UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WLT7_EGGLE Length = 141 Score = 88.7 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 10/137 (7%) Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRER-------IALASADAMLSAGLPVLDKKYPV 142 ++ P R + PW+ + A + L + PV Sbjct: 3 RQTLINFVPVKRRVKLEFRGKCTSCPWKLKGCHVYTPQATIDEERALGQAYKGPRHEGPV 62 Query: 143 RASLTFVMPRPSGTPKSYT-PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVL 201 + P PK P PD+D +A+AVLDGL + + DD QV +LH K Sbjct: 63 SVRIDVFRVLPGSRPKRVLGEPDTMTPDIDNIAKAVLDGLNGIAYDDDKQVVELHVYKH- 121 Query: 202 AELSQQPGCHMRIASPG 218 + ++ G +RI+ G Sbjct: 122 -DRERRVGDSVRISVEG 137 >UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Y4_STRSW Length = 161 Score = 87.9 bits (216), Expect = 3e-16, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 64/166 (38%), Gaps = 29/166 (17%) Query: 66 GGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 L + V G PAPQGSK+ L ESSAAV PWRE + A+ Sbjct: 2 TAPALLLTVYGTPAPQGSKN--------------RNRAGALYESSAAVKPWREAVKTAAL 47 Query: 126 DAMLSAGLPVLDKKYPVRASLTFVMPRPS---------GTPKSYTPP-AVKRPDLDKLAR 175 DA L PV F + RP G K P PDLDKL R Sbjct: 48 DA-LHHDDGWTALSCPVWLDAQFTLRRPKHHYGTGRNAGRLKPSAPAYPTGTPDLDKLVR 106 Query: 176 AVLDGLTDV-VWLDDSQVDDLHARKVL---AELSQQPGCHMRIASP 217 D L D V DDS V L A KV + + PG +R+ Sbjct: 107 CTQDALKDAGVLADDSVVASLSASKVYVLWGDALRTPGAVIRVWRL 152 >UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A3T9_9BACT Length = 151 Score = 84.0 bits (206), Expect = 4e-15, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 9/99 (9%) Query: 124 SADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP----PAVKRPDLDKLARAVLD 179 + +L P VR LTF P + K + P +PD D A+ D Sbjct: 47 AYCTLLVTHRPPQPLAGFVRCHLTFTWPWLAKHTKKHRAFGWYPHGGKPDWDNAAKLFCD 106 Query: 180 GLTDVVW--LDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 L V + DD+Q+ D K + PG +R++ Sbjct: 107 CLKTVGFFQRDDAQIFDGRLIKGHGDR---PGIRVRLSE 142 >UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacterium longum subsp. infantis RepID=B7GQZ5_BIFLI Length = 142 Score = 82.1 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%) Query: 98 PGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVL-DKKYPVRASLTFVMPRPSGT 156 P + + A+ P R A A P + PVR F M Sbjct: 1 MPKGRPRV--YNGHAMTPKRTVRAEERLFAEFRLKYPQAKPYQCPVRLEAEFWM------ 52 Query: 157 PKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 RPDLD L + VLD L V ++DD+QV + HA K + ++ G R Sbjct: 53 ------SHRGRPDLDNLLKLVLDSLNGVAYVDDAQVVESHACKRMPDMWVY-GAKGRYRR 105 Query: 217 PGWGDE 222 GD Sbjct: 106 RKSGDP 111 >UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=13 Tax=root RepID=RUSA_BPR1T Length = 131 Score = 81.7 bits (200), Expect = 2e-14, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%) Query: 123 ASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT 182 A M + +K P++ S+TF K + RPDLD L + + D +T Sbjct: 41 LKAQLMKNKPKECFEKNVPLKLSVTFFYAI--KQKKRWWQWKTSRPDLDNLMKNLQDYMT 98 Query: 183 DV-VWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 + + DDSQ+ L A+KV E + + I Sbjct: 99 KLRYYSDDSQIVWLEAKKVNDEKN---RIEIEITEV 131 >UniRef50_C2LH12 Endodeoxyribonuclease RusA n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LH12_PROMI Length = 131 Score = 81.4 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%) Query: 115 PWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-----PPAVKRPD 169 W++R + A A LTFV+P P K P +RPD Sbjct: 21 AWKKRPVVVKYHAFCDEMKANRFTLPESGAHLTFVIPMPKSWSKKKRIEMNGKPHQQRPD 80 Query: 170 LDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 +D L +AV+D + + +D +V ++ A K+ E + Sbjct: 81 VDNLIKAVMDAI----FDEDCRVWNISASKLWGEQGK 113 >UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A4110 Length = 107 Score = 76.0 bits (185), Expect = 9e-13, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 6/99 (6%) Query: 121 ALASADAMLSAGLPVLDKKYPVRASLTF-VMPRPSGTPKSYTPPAVKRPDLDKLARAVLD 179 A ++A LP LD +Y + + +P K TP D+D A+ V+D Sbjct: 12 AYKVYQKAIAAALPKLDSQYTGELEVILEFVCKPIAKSKFTTPMG----DVDNFAKGVMD 67 Query: 180 GLTD-VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 LTD W DD Q+ L RK L + P + I Sbjct: 68 TLTDEGWWEDDRQIMQLAVRKRFPALGEDPHIRIYIREL 106 >UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QRE3_NITHX Length = 112 Score = 74.0 bits (180), Expect = 4e-12, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 22/117 (18%) Query: 101 RGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY 160 RG L + A+++ A + PV L + + Sbjct: 18 RGRRFLTTDGKRT---KLLNAVSARKQYRGA-----PLEGPVCVELQVYFKSKASS---- 65 Query: 161 TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 D+D + +A LD LT ++W DD Q+ +LHA K+ + +P + ++ Sbjct: 66 --------DIDNVCKAALDSLTGILWKDDRQIQELHAYKL--QDKLRPRIELTLSQL 112 >UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MNI2_ANATD Length = 124 Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 37/147 (25%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ + KP P+ G G + E I + + Sbjct: 4 FKIEIQTKPVPKARPR------------LGANGRMYTP---KETREFEELIGWTTRSVVR 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 + PV+ ++ R D D +A+A+LDGL+ V ++DD Sbjct: 49 K------PIEKPVKVNIDVYSK--------------TRADFDNIAKAILDGLSGVAFIDD 88 Query: 190 SQVDDLHARKVLAELSQQPGCHMRIAS 216 QV DL RK+ + I Sbjct: 89 RQVVDLRIRKL--TPVNCEKIVISIRE 113 >UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA superfamily n=1 Tax=Bacillus cereus H3081.97 RepID=B5V5C5_BACCE Length = 135 Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 16/94 (17%) Query: 107 KESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVK 166 ++ + W+ R+ A+ + P ++ S+T+ Sbjct: 17 TKNRNRLQEWKARVRSAAELYWPTEDSP---SDKQLKLSITYYYE-------------NT 60 Query: 167 RPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKV 200 PD+D + + + D L +V+ DD Q+ D K Sbjct: 61 SPDVDNIIKPIQDALVGLVYNDDDQIIDTSCGKR 94 >UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=53 Tax=root RepID=RUSA_SHISS Length = 120 Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 43/127 (33%), Gaps = 20/127 (15%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P + R SA +R+ + +AML GL PV+ + MP Sbjct: 11 PPSNNRYYRHNRGRTHISAEGQAYRDNVTRIIKNAMLDIGL-----AMPVKIRIECHMPD 65 Query: 153 PSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCH 211 DLD L +A D LT WLDD+QV D K+ Sbjct: 66 RRRR------------DLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGG--RLE 111 Query: 212 MRIASPG 218 + I G Sbjct: 112 LTITEMG 118 >UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ91_9FIRM Length = 121 Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 19/39 (48%) Query: 167 RPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELS 205 +PD+D + + D L + +LD+ Q+ K + + Sbjct: 59 KPDIDNIMKITADALNGLAYLDNKQIISCTVGKYYSNVQ 97 >UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B534_METEA Length = 225 Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 42/150 (28%), Gaps = 27/150 (18%) Query: 68 RQLRMFVPGKPAPQGSKD------------------FMGFKKAPEGSPPGTRGPAILKES 109 ++ V +P P+ F G T + Sbjct: 53 PEISFAVSLEPRPKERPRTFLPPAELARAFAAAQGNPNRFLSIVRGGDEDT-RIRHHTYT 111 Query: 110 SAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPD 169 + + +A A AM P+ SL P D Sbjct: 112 PKETAAFESAVRMAGAAAMRGRE--------PIAVSLGIDAILAFDGDAGLWPTDNTDGD 163 Query: 170 LDKLARAVLDGLTDVVWLDDSQVDDLHARK 199 LD L +AVLD + VV+ DD V ++ K Sbjct: 164 LDNLVKAVLDAVNGVVFKDDRLVVEMRLAK 193 >UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XIH3_SYNP2 Length = 135 Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 21/115 (18%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 F + +G P + + W+ + + S + Sbjct: 2 FSRLEFIVDGPPVSQQTRRR-----ERLRDWKRVVRQEAEKYWSSGQK---ATTGLIMLQ 53 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKV 200 +T+ D+D + + + D + +V++DD QV D+ RK Sbjct: 54 ITYFY-------------DSVAIDVDNIVKPIQDAIIGLVYIDDDQVTDVLVRKR 95 >UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacteraceae RepID=B0T4W4_CAUSK Length = 132 Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 18/130 (13%) Query: 88 GFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLT 147 G ++ + ++ I G ++ V + Sbjct: 10 THHGKVRAREDGGELTLVVDGLTTQAKYYKPLIYEFFRKVWR--GSRPAWGEFSVEIGME 67 Query: 148 FVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQ 207 FV P DLD LA+A+LD + + DD+QV L + AE Sbjct: 68 FVGDPPWM-------------DLDNLAKALLDAIKGYAFHDDAQVARLLVERRPAERE-- 112 Query: 208 PGCHMRIASP 217 + + Sbjct: 113 -RIIIVVRKL 121 >UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscillatoriales RepID=A0YIY0_9CYAN Length = 322 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 39/160 (24%), Gaps = 32/160 (20%) Query: 62 YERNGGRQ-LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERI 120 YE N +R +PG P+ WR R Sbjct: 191 YEPNSTENLVRFCIPGTVVPKARPRVTSNG----------------TYMPNRYREWRNRA 234 Query: 121 ALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDG 180 + M V SL F DLD +A A LD Sbjct: 235 EIELYRQMSQFHSTHKFPLQKVAVSLRFF------------GNHRTNSDLDNMAGACLDA 282 Query: 181 LT---DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 LT V +DD +++ G + I Sbjct: 283 LTLNGAGVLMDDRLSCLPRLTVEYVSGTKETGVWIEIQPL 322 >UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter formigenes RepID=C3X8S6_OXAFO Length = 222 Score = 53.6 bits (127), Expect = 6e-06, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 14/148 (9%) Query: 84 KDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVR 143 + + P + S A ++ R+ A+ +A + V Sbjct: 7 PYPISANRYWRTYLPRGCAAPVTTVSPEA-RAYQNRVRRAAREA-----GVLCPFPGRVA 60 Query: 144 ASLTFVMPRPSGTPKS------YTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHA 197 S RP + +V+ DLD + + D + +V+ +D+ + + Sbjct: 61 VSYVLYPKRPLDWVRRQRMNPARWDDSVQCMDLDNAQKVLFDAMEGIVYENDNLIRRIEG 120 Query: 198 RKVLAELSQQPGCHMRIASPGWGDEAIA 225 + + + + + E +A Sbjct: 121 ERAVPD--GDARVLVTVEPIEDLVEPVA 146 >UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBQ4_9ENTR Length = 124 Score = 53.2 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 41/131 (31%), Gaps = 21/131 (16%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 F + +G ++ E ASA A + LP S+T Sbjct: 11 FPPSVNTYWRNLKGKTLISEKGRRYR--------ASAIAAIYQQLPRRSDAITGIVSVTV 62 Query: 149 VMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQ 207 M P+ + D+D +A D LT +W DD QV ++ + Sbjct: 63 KMFPPTSHRR----------DIDNYLKAPFDALTHANIWKDDDQVKHADIA--WCDVVKG 110 Query: 208 PGCHMRIASPG 218 + I G Sbjct: 111 GRFEITIRPIG 121 >UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease n=3 Tax=Arsenophonus nasoniae RepID=D2U1C7_9ENTR Length = 129 Score = 53.2 bits (126), Expect = 7e-06, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 15/108 (13%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P R + S ++ A + +G + + V L Sbjct: 12 PPSVNTYWRHNSKHTYLSNKAKAFKATTAKIVNEMRQKSGCQKFEGEVSVLMQLYL---- 67 Query: 153 PSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARK 199 P + D+D ++ VLD LT VW DDSQV + K Sbjct: 68 ----------PNKIKRDVDNYSKGVLDSLTGADVWNDDSQVRVMTIEK 105 >UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobacteria RepID=B2U8I2_RALPJ Length = 158 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 14/136 (10%) Query: 94 EGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRP 153 P + + + ++E++A + A + V+ T RP Sbjct: 21 RIVKPKSGPSFVSTYVTPEAKAYKEQVAWLAKSAGVRE-----PLACRVQIDYTLYPKRP 75 Query: 154 SGTPKSYTPPA------VKRPDLDKLARAVLDGLTDVVWLDDS-QVDDLHARKVLAELSQ 206 + V+ DLD + +LD L VV DD QV +HA + + + Sbjct: 76 QDWERRVAKDPLQWDNTVQCIDLDNAQKVLLDALKGVVIQDDGWQVRRIHAERGVPD--G 133 Query: 207 QPGCHMRIASPGWGDE 222 + + + + Sbjct: 134 EARIVVTVTTLLEESP 149 >UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadaceae RepID=Q0AN00_MARMM Length = 112 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 18/112 (16%) Query: 106 LKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV 165 + + ++ I + + PA Sbjct: 10 VDAVTTQTRRFKSLIGEFFRLEFKRTQPKWGPYEVCIEV---------------ARDPAS 54 Query: 166 KRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 D+D +A+AVLD LT VV+ DDSQV+ L +V + P + Sbjct: 55 PDHDVDGVAKAVLDALTGVVFHDDSQVERLLVTRVEGDR---PRIAVTARPM 103 >UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA family protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L7A6_RUMHA Length = 192 Score = 51.3 bits (121), Expect = 3e-05, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 26/155 (16%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPW-RERIALASAD 126 +L P P ++ ++ + P + + + + I L + Sbjct: 3 EKLVFT---SPIPPSVNHYLAYRTIIKNGK-----PMAMSYKTKEAKDYQKNIIELIKKE 54 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD--V 184 + +K + F PR D + + + D +TD + Sbjct: 55 VEKQRWVKSDNKFQHYYMDVVFYFPR-------------VDMDANNYFKCLADAITDTEL 101 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 VW+DD+Q+ + P + I + Sbjct: 102 VWIDDTQLCERVMGIYYDNK--NPRMEIEIKPVNY 134 >UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 RepID=C3WYQ9_9FUSO Length = 117 Score = 50.5 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 36/135 (26%), Gaps = 20/135 (14%) Query: 83 SKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPV 142 + F K + + S A +R+ + + V Sbjct: 2 KQRFEIPYKPDSMNTHWRIAKNGGQYLSKAGREFRDNVQNYIKL------YKYKTYEKSV 55 Query: 143 RASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLA 202 + L DLD + +LD +++DD Q+D + A K + Sbjct: 56 KVKLDLYFADKRTR------------DLDNYFKGILDSFKGFLYVDDKQIDKIEATKHIG 103 Query: 203 ELSQQPGCHMRIASP 217 + + Sbjct: 104 AGKNY--FIIEVEEL 116 >UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLE3_MOOTA Length = 98 Score = 50.5 bits (119), Expect = 5e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 164 AVKRP-DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 A P DLD +++ D L + WLDD QV + KV+ + + +A Sbjct: 41 ATHPPGDLDNYIKSLADSLNGIAWLDDRQVARMEVEKVVVVEGDE-RAEVEVAP 93 >UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MV65_9FUSO Length = 109 Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 19/112 (16%) Query: 107 KESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVK 166 + S + E ++ + + Sbjct: 16 RYKSKRGKEFEEIAKYELKKQYKGEVTKKR-----LKVEIWLYFKTRAKR---------- 60 Query: 167 RPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 D+D +A+LD L +V DD +DDL K+ + ++ I G Sbjct: 61 --DIDNYNKAILDSLKGIVIEDDELIDDLAVHKIKG--HGKDKVYIEILERG 108 >UniRef50_B3SZS6 Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_48F7 RepID=B3SZS6_9ZZZZ Length = 119 Score = 49.8 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 13/71 (18%) Query: 158 KSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 K P +PDLD + + +D L DD+ V + A K +E QPG + + Sbjct: 57 KHVGKPCQSKPDLDNVLKGFMDALR----TDDASVYAVSASKFWSE---QPGVVLSVRV- 108 Query: 218 GWGDEAIAAWQ 228 AW+ Sbjct: 109 -----PAPAWR 114 >UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSA8_SODGM Length = 124 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 24/122 (19%) Query: 78 PAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLD 137 P P G+ +AP G ++ E A A A+ + Sbjct: 6 PFP---PSVNGYWRAPNRGKLA--GRHLVSERGRRYR------AEAVAEILEQLRGMPQP 54 Query: 138 KKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDG-LTDVVWLDDSQVDDLH 196 K + S+ F P K DLD +A+ D + +W+DDSQ+ L Sbjct: 55 VKGDLAVSVMFC---PPSRAKR---------DLDNYFKALFDSVINAGIWIDDSQIKKLE 102 Query: 197 AR 198 A Sbjct: 103 AE 104 >UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7I2_9BACT Length = 132 Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 20/124 (16%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P + R S +R+ + D + + + F P Sbjct: 10 PPSNNTYYRHVGHRTLLSRKAHAYRKAVLGMLKD------RVLPEFTGEIELYAEFYPPD 63 Query: 153 PSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCH 211 K DLD L + + D L ++ DDSQ+ L K + Sbjct: 64 -----KRKR-------DLDNLLKGLQDTLQHAGLFRDDSQIVHLDIVKKEPHRPDG-RAY 110 Query: 212 MRIA 215 +RI Sbjct: 111 VRIK 114 >UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillus minor NM305 RepID=C5S0Z1_9PAST Length = 114 Score = 47.8 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 23/118 (19%) Query: 100 TRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKS 159 +A +++ + + + P V + Sbjct: 17 KHTRNGKHYITAKGKTFQQEVRWLTRN------RPKFI--GKVLLEVDIY---------- 58 Query: 160 YTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 PP ++ D+D + +A+LD LT+ V +DDS V L A K+ + + +RI Sbjct: 59 --PPDNRKRDIDNIFKALLDALTNAGVIIDDSFVYKLVAEKLPSIKGGK--VIVRIKE 112 >UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria RepID=Q0BY13_HYPNA Length = 118 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 21/36 (58%) Query: 169 DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAEL 204 DLD LA+A+LD L V+ DD QV L + AE Sbjct: 71 DLDNLAKALLDSLCGNVFEDDHQVARLLVERRAAER 106 >UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=Neisseria gonorrhoeae RepID=D1DX10_NEIGO Length = 178 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 40/143 (27%), Gaps = 12/143 (8%) Query: 75 PGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLP 134 P +G + P + R SA +RE + + A G Sbjct: 48 PVDATGRGMRVTRLILPYPVSANRYWRIWRNRAVRSAEAAAYRETVRRIAQGA----GAM 103 Query: 135 VLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDD 194 + V L P V DLD + LD L V + +D QV Sbjct: 104 PSEGAVAVYVRL-----IPKANKDGGANKTVI--DLDNALKVTLDALQGVAYHNDRQVRR 156 Query: 195 LHARKVLAELSQQPGCHMRIASP 217 + A E G + + Sbjct: 157 IAAD-YADEPVAGGGLAVEVGEL 178 >UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA family n=2 Tax=Viruses RepID=C5VUH2_9VIRU Length = 215 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 44/161 (27%), Gaps = 21/161 (13%) Query: 59 RVTYERNGGRQL-RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWR 117 R + N + + ++ P P S + + + G + P + ++ ++ Sbjct: 10 RCCFISNTKKPILKLVSPIPP----SVNHYLAPRPFIMTKNGKKVPMVTMYETSEAKKYK 65 Query: 118 ER-IALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARA 176 + I + K F R D + Sbjct: 66 KEFIKYVKEEVRKQKWDITCTKDKHFYFDTIFHFDRVDK-------------DEQNYYKC 112 Query: 177 VLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 + D L + ++DD + K+ S P + I Sbjct: 113 LCDALNGLAYIDDRNIL-TRCFKI-DYDSINPRIEITIHPV 151 >UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomonas palustris RepID=Q07I62_RHOP5 Length = 138 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 169 DLDKLARAVLDGLTDVVWLDDSQVDDLHARKV 200 D+D + + +LD L ++ DD QV L +K Sbjct: 67 DIDNIVKPILDALGRHIYRDDKQVYRLVVQKF 98 >UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NV05_SODGM Length = 119 Score = 45.5 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Query: 162 PPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHA 197 PP ++ DLD L +A LD L V+ DD+Q+ DLH Sbjct: 63 PPDRRKRDLDNLLKAPLDALQHAGVYEDDNQIIDLHI 99 >UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6T7_9BACT Length = 141 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 34/165 (20%) Query: 55 ALSARVTYERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVG 114 +L + ++ + + +PG P P + ++ +A Sbjct: 8 SLRKKEVWKIENNKIFEIEIPGLP--------------PTVNHFYRTSRTGVRYKTAEGK 53 Query: 115 PWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLA 174 W+ + L M +A V + T K D+D Sbjct: 54 AWQAGVVLL----MRTANKNYQAYAGEVGLYIDL-----MSTDKRRW-------DVDNRI 97 Query: 175 RAVLDGL-TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 +A+ D L + V +D+QV +LHAR+V + + ++ I Sbjct: 98 KALQDCLASAGVIKNDTQVIELHARRVHGDDEKT---NVMIYKLA 139 >UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribonuclease n=5 Tax=Enterobacteriaceae RepID=C4X6W2_KLEPN Length = 132 Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 29/147 (19%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +P P + +G ++ E+ ++ + A + + Sbjct: 1 MKFILPFPP--------SVNSYWRSPNKGTAKGKLLVSEAGRK---FKHAVRAAIIEQLK 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLD 188 + P P + P DLD +A+ D LT +W D Sbjct: 50 AVPKP---SASPAEVVIVLHPPDYRRR------------DLDNYNKALFDALTYAGIWED 94 Query: 189 DSQVDDLHARKVLAELSQQPGCHMRIA 215 DSQV + ++ + I Sbjct: 95 DSQVKRMTIE--WGGNAKGGRVEITIT 119 >UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bacteroides vulgatus ATCC 8482 RepID=A6L486_BACV8 Length = 124 Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 13/83 (15%) Query: 148 FVMPRPSG--------TPKSYTPPAVKRPDLDKLARAVLDG--LTDVVWLDDSQVDDLHA 197 F + P ++ KRPDLD + +LD +T + +D Q + Sbjct: 45 FYIQCPERGRMIEGYFRLRAKVYYNSKRPDLDNSLKILLDCLQMTGTI-KNDRQCVYIEI 103 Query: 198 RKVLAELSQQPGCHMRIASPGWG 220 K + +P I +G Sbjct: 104 EKFVDRK--EPRVEYEITPVEFG 124 >UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN52_9ACTN Length = 72 Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 4/57 (7%) Query: 162 PPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 P +PD+ + + D L V DD + D H K A + G + Sbjct: 7 EPHTGKPDMSNMLKTFEDCLVRCSVIDDDRGIIDEHLSKGYA---KTYGIFFKAEEI 60 >UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribonuclease n=34 Tax=root RepID=B4TRD0_SALSV Length = 129 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 9/119 (7%) Query: 105 ILKESSAAVGPWR--ERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT- 161 IL + WR + A A + +AG +P+P+ P S Sbjct: 4 ILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSTACAAIVEQLRRLPKPTSAPASVEI 63 Query: 162 ---PPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 PP + DLD +A+ D LT VW DDSQV + + + + I+ Sbjct: 64 VLFPPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVE--WGPVIPEGKVEITISK 120 >UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia RepID=B2JL34_BURP8 Length = 164 Score = 43.2 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 48/176 (27%), Gaps = 44/176 (25%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G+PA + + + GT + S + DA+ Sbjct: 2 RVAFTLRGEPASKANSR-EIVARKVRSKTDGTLKTRPMSIKSDKARNFE-------RDAL 53 Query: 129 LS-AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD---- 183 + PVR L A +RPDLD +LD + D Sbjct: 54 KQIPPSARVRMTGPVRVILKIFY-------------ATERPDLD--ESVILDVMQDRFRT 98 Query: 184 --------------VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIA 225 V+ +D QV P + I S A+A Sbjct: 99 VTVKGIERRELVYHGVYRNDRQVRQKFV--FHGIDRVNPRAEVVIESLQEQQLALA 152 >UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B184_HERA2 Length = 138 Score = 43.2 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 21/127 (16%) Query: 102 GPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT 161 + +E+ A + ++AL +S L + + L F P Sbjct: 23 RRVLSREAQAFKRQVKRQLALLQQRDTISEQFLALAHQGYIALFLDFYFETPLRR----- 77 Query: 162 PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGD 221 DLD + D + + ++D++V D+H K + P + + Sbjct: 78 -------DLDGGLKITQDSICTSLGINDNRVVDIHLVKRID--PLHPRLEVELE------ 122 Query: 222 EAIAAWQ 228 A++ WQ Sbjct: 123 -ALSDWQ 128 >UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693C21 Length = 124 Score = 42.8 bits (99), Expect = 0.011, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 25/121 (20%) Query: 101 RGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY 160 +G ++ S W E + ++D G V L F P Sbjct: 22 KGKRAVRVLSQEAREWYEETVILASDWRKKNG--WQTAGGKVIVRLWFYFPDRRRR---- 75 Query: 161 TPPAVKRPDLDKLARAVLDGLTDVVWLDDS-----QVDDLHARKVLAELSQQPGCHMRIA 215 D + +LD L D + DD QV D ++P + + Sbjct: 76 --------DTHNGLKILLDALEDARFYDDDKHALPQVMD------YGIDRERPRVEIELE 121 Query: 216 S 216 Sbjct: 122 R 122 >UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EUW4_DICNV Length = 125 Score = 42.4 bits (98), Expect = 0.014, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 14/115 (12%) Query: 84 KDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVR 143 F P R S +R + L + + + DK+ + Sbjct: 4 HTFKALLPMPPSVNHYYRRRGSHVYLSDEARIFRRDVVLKTIGKIPNKKR-WFDKEQRLA 62 Query: 144 ASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHA 197 ++T D+D +A+LD L ++ V+ +D+Q+DDL Sbjct: 63 MTVTLYPTNRRSF------------DIDNRLKALLDVLQEIGVYHNDNQIDDLRV 105 >UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=129 Tax=Enterobacteriaceae RepID=B2U015_SHIB3 Length = 126 Score = 42.1 bits (97), Expect = 0.016, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 18/130 (13%) Query: 85 DFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRA 144 P R S A +R +AL L + Sbjct: 4 RIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQ-----QRLKLSLSGRLAI 58 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAE 203 + P K DLD + +A LD LT + +DD Q D+++ + Sbjct: 59 KIIAEPPD-----KRRR-------DLDNILKAPLDALTHAGLLMDDEQFDEINIVRAQPV 106 Query: 204 LSQQPGCHMR 213 + G + Sbjct: 107 SGGRLGVKIY 116 >UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A959_THEAQ Length = 118 Score = 41.7 bits (96), Expect = 0.019, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 162 PPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCHM 212 PP ++ DLD + +A+LD L V DD QV L+ + E + + Sbjct: 61 PPDRRKRDLDNITKALLDALVGAGVLKDDHQVAVLYVERRPFERPGKVRLVV 112 >UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=19 Tax=root RepID=RUSA_BPHK7 Length = 120 Score = 40.5 bits (93), Expect = 0.047, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 35/123 (28%), Gaps = 18/123 (14%) Query: 92 APEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMP 151 P R S +R+ + LD R + + Sbjct: 10 YPPSLNTYWRRRGSQYYISDKGQKYRKDVQQIIRQ-------LKLDIFTKSRLRIKVIAD 62 Query: 152 RPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVW-LDDSQVDDLHARKVLAELSQQPGC 210 P + DLD + + +LD L + DD Q DD+ + + + G Sbjct: 63 VPDSRRR----------DLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGI 112 Query: 211 HMR 213 + Sbjct: 113 KIT 115 >UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSR8_9PROT Length = 91 Score = 40.5 bits (93), Expect = 0.047, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 10/72 (13%) Query: 119 RIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVL 178 + + M V P A + + D+D +A+AVL Sbjct: 30 ALKKIVSAHMRRQVAFVRPAFGPFEARIW------TSVLAETRGHH----DVDNIAKAVL 79 Query: 179 DGLTDVVWLDDS 190 D L+ +W DD Sbjct: 80 DSLSGHIWRDDR 91 >UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ34_9DEIN Length = 120 Score = 40.1 bits (92), Expect = 0.066, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 31/134 (23%), Gaps = 24/134 (17%) Query: 83 SKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPV 142 + P V WR+ +A S + PV Sbjct: 5 RPACLCLPWPPASGNHQYGRRTRGVYLRREVTAWRDEVAWLSRGH---------KAEVPV 55 Query: 143 RASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVL 201 + P D D + + +LD L V DD R Sbjct: 56 ELRIRLYPPDNRRR------------DADNVLKLLLDALVRAGVIPDDCNRVVRAYRMEW 103 Query: 202 AELSQQPGCHMRIA 215 +PG + + Sbjct: 104 G--QARPGGAIEVE 115 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX0... 175 1e-42 UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO 132 9e-30 UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans ... 131 2e-29 UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncu... 129 8e-29 UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli... 129 1e-28 UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobi... 128 2e-28 UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacte... 127 3e-28 UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN 125 2e-27 UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas a... 124 2e-27 UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A... 122 8e-27 UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidami... 122 8e-27 UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas p... 122 8e-27 UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q... 122 1e-26 UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9... 122 1e-26 UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 122 1e-26 UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteoba... 120 5e-26 UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus ... 119 6e-26 UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia... 118 2e-25 UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminoc... 118 2e-25 UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus... 118 2e-25 UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verruc... 116 5e-25 UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3... 116 5e-25 UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostri... 116 9e-25 UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcu... 116 9e-25 UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Strepto... 114 2e-24 UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacte... 114 2e-24 UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus Re... 114 3e-24 UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium p... 114 3e-24 UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJ... 113 5e-24 UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter s... 112 1e-23 UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus lichenifo... 112 1e-23 UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillu... 110 4e-23 UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillu... 110 5e-23 UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Ta... 107 2e-22 UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus ... 107 3e-22 UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia ... 107 4e-22 UniRef50_C0X7X1 Possible crossover junction endodeoxyribonucleas... 106 5e-22 UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas s... 106 7e-22 UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea f... 106 7e-22 UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opituta... 106 1e-21 UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax... 103 4e-21 UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales R... 103 4e-21 UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Ta... 103 6e-21 UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospiri... 103 6e-21 UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4Z... 102 1e-20 UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes Re... 102 1e-20 UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q... 101 3e-20 UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7... 99 8e-20 UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Rumino... 98 2e-19 UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscilla... 98 2e-19 UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB 98 3e-19 UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudona... 98 3e-19 UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepI... 98 3e-19 UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collins... 96 1e-18 UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A... 96 1e-18 UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA fa... 95 2e-18 UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteri... 95 2e-18 UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomacu... 94 3e-18 UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Ta... 93 6e-18 UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornu... 93 7e-18 UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Ta... 93 8e-18 UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tric... 93 1e-17 UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD 91 2e-17 UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collins... 90 5e-17 UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA fa... 89 2e-16 UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteri... 89 2e-16 UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella l... 87 4e-16 UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=... 86 1e-15 UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidob... 84 4e-15 UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter f... 83 6e-15 UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylo... 83 7e-15 UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Str... 83 9e-15 UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetob... 82 1e-14 UniRef50_C2LH12 Endodeoxyribonuclease RusA n=1 Tax=Proteus mirab... 81 2e-14 UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum ... 81 3e-14 UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter h... 80 7e-14 UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2... 79 9e-14 UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobac... 78 2e-13 UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthro... 78 2e-13 UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=... 78 2e-13 UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=... 74 3e-12 UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacteri... 74 4e-12 UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 ... 72 2e-11 UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadace... 71 2e-11 UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease... 71 3e-11 UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacterac... 70 6e-11 UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia ... 69 1e-10 UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA su... 68 2e-10 UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterob... 67 5e-10 UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=N... 66 1e-09 UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribo... 65 3e-09 UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synecho... 64 3e-09 UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillu... 64 6e-09 UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis v... 62 1e-08 UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermos... 62 1e-08 UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis... 60 8e-08 UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glos... 57 4e-07 UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria ... 55 2e-06 UniRef50_B3SZS6 Putative uncharacterized protein n=1 Tax=uncultu... 55 2e-06 UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorell... 53 7e-06 UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomo... 49 1e-04 Sequences not found previously or not previously below threshold: UniRef50_B5VV93 Endodeoxyribonuclease RusA n=2 Tax=Arthrospira R... 71 4e-11 UniRef50_Q119T1 Endodeoxyribonuclease RusA n=1 Tax=Trichodesmium... 66 1e-09 UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichel... 56 9e-07 UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=... 53 8e-06 UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquat... 53 9e-06 UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribo... 53 1e-05 UniRef50_Q9AKY6 Putative uncharacterized protein n=1 Tax=Legione... 53 1e-05 UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bactero... 52 1e-05 UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=... 51 2e-05 UniRef50_O67766 Crossover junction endodeoxyribonuclease rusA n=... 51 3e-05 UniRef50_C5VNX0 Endodeoxyribonuclease RusA family protein n=1 Ta... 50 7e-05 UniRef50_A3MZM1 Predicted Endodeoxyribonuclease RusA n=5 Tax=Pas... 50 8e-05 UniRef50_O52945 Plasmid PLS32 DNA for thymidine kinase, replicat... 49 1e-04 UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus ... 49 2e-04 UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=... 49 2e-04 UniRef50_C8Q091 Holliday junction resolvase n=1 Tax=Enhydrobacte... 49 2e-04 UniRef50_A6TU92 Endodeoxyribonuclease RusA n=10 Tax=Clostridiace... 48 2e-04 UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon... 48 2e-04 UniRef50_B8HN12 Endodeoxyribonuclease RusA n=1 Tax=Cyanothece sp... 47 4e-04 UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvula... 47 4e-04 UniRef50_Q2NPB1 Putative HNH family gene n=1 Tax=Xanthomonas pha... 47 5e-04 UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia ... 45 0.002 UniRef50_B0QX07 Predicted Endodeoxyribonuclease RusA n=1 Tax=Hae... 45 0.002 UniRef50_B0V859 Putative Holiday-junction resolvase n=1 Tax=Acin... 45 0.002 UniRef50_C0QUS6 Crossover junction endodeoxyribonuclease RusA (H... 44 0.004 UniRef50_Q8PFN4 Putative uncharacterized protein n=1 Tax=Xanthom... 44 0.004 UniRef50_B4U8U8 Endodeoxyribonuclease RusA n=1 Tax=Hydrogenobacu... 44 0.005 UniRef50_C8WWQ1 Endodeoxyribonuclease RusA n=4 Tax=Alicyclobacil... 44 0.006 UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626... 43 0.008 UniRef50_C9KYW6 Crossover junction endodeoxyribonuclease RusA fa... 43 0.010 UniRef50_C7RH80 Endodeoxyribonuclease RusA n=1 Tax=Anaerococcus ... 42 0.011 UniRef50_C6NYJ0 Endodeoxyribonuclease RusA n=1 Tax=Acidithiobaci... 42 0.011 UniRef50_D2U459 Phage V crossover junction endodeoxyribonuclease... 42 0.012 UniRef50_C4GFT5 Putative uncharacterized protein n=1 Tax=Kingell... 42 0.014 UniRef50_C4K4W1 Endonuclease RUS n=1 Tax=Candidatus Hamiltonella... 41 0.036 UniRef50_A1HR43 Endodeoxyribonuclease RusA n=1 Tax=Thermosinus c... 40 0.060 UniRef50_B7KYT0 Endodeoxyribonuclease RusA n=2 Tax=Methylobacter... 39 0.091 >UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX08_BPMT4 Length = 213 Score = 175 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 133/193 (68%), Positives = 157/193 (81%), Gaps = 9/193 (4%) Query: 30 EHAKAAAAELLLDMVPAESYDVLYAALSARVTYERNGGRQLRMFVPGKPAPQGSKDFMGF 89 + AK AAA+ +L M+PA++++ L AL ARVT +RNG RQLR+FVPG+PAPQGSKDF GF Sbjct: 9 DEAKLAAADAVLAMLPADAHEALREALHARVTGDRNGSRQLRLFVPGRPAPQGSKDFKGF 68 Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 K G AILKESS AVGPWRER+ALA+A A+L+ GLPVL K++ + AS+TFV Sbjct: 69 SKT---------GKAILKESSDAVGPWRERVALAAASAILAEGLPVLAKEFSIAASVTFV 119 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPG 209 MPRP+G PK TPPAVKRPDLDKLARA+LDGLTDVVW+DDSQV DLH RKVLAEL+Q PG Sbjct: 120 MPRPAGAPKRSTPPAVKRPDLDKLARAILDGLTDVVWIDDSQVVDLHCRKVLAELTQPPG 179 Query: 210 CHMRIASPGWGDE 222 H+RIASPGWGDE Sbjct: 180 AHIRIASPGWGDE 192 >UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO Length = 139 Score = 132 bits (332), Expect = 9e-30, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 27/155 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + +PGKP QG F + + A ++ + + Sbjct: 3 IEFTIPGKPVGQGRPRFSRHRGYVQ------------TYDPAKSRQYKAIATMCAQRVYS 50 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 + P++ ++ K+PD+D + + ++D L Sbjct: 51 GE-----PLETPLKITVKAYFGLYKSYTNKRREACLSGQEVPTKKPDIDNIVKGIMDSLN 105 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 V++ DD QV L A K AE P + + Sbjct: 106 GVIYHDDKQVIQLVAFKAYAEK---PRVEVTVEEL 137 >UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1J2_9PROT Length = 143 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 26/159 (16%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + VPG P +G F RG + + + + LA+A Sbjct: 1 MTSITFTVPGTPVGKGRPKF------------ARRGKFVTTYTPEKTASYENLVKLAAAK 48 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLD 179 AM + S+ + P+ + +PD+D + + + D Sbjct: 49 AMDGRQ----PIDGAAQVSIWLWVTPPASWSQKKQRQALAHEIFPTTKPDMDNVVKGIFD 104 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 + ++VW DD QV DL K +E ++I G Sbjct: 105 AMNEIVWQDDKQVIDLSCYKRYSE---TARAEVKITQIG 140 >UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncultured marine microorganism HF4000_APKG7N23 RepID=B3TA02_9ZZZZ Length = 145 Score = 129 bits (324), Expect = 8e-29, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 17/153 (11%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 +++ +PGKP QG F +G ++ ++ IA + A Sbjct: 2 RIKFTLPGKPVAQGRPRFYR------------KGNFVVATDPKPSKVYKADIAYIAQKAC 49 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPK----SYTPPAVKRPDLDKLARAVLDGLTDV 184 AGL L + P+ + P P + KRPD D +A++V DGL V Sbjct: 50 EEAGLDGL-FEGPLGIQILAYFPCPKSKWRVKNPRPEEHHSKRPDADNIAKSVKDGLNGV 108 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 ++ DD Q+ +L RK +A + P + + Sbjct: 109 LYHDDGQISELIVRKRIAAQGEGPRIEVELYKM 141 >UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli RepID=A8U815_9LACT Length = 145 Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 27/163 (16%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++++ VPG+P PQG F ++ +A + Sbjct: 2 EIKITVPGQPVPQGRPKFTTIGGHARA------------YDPKKSVDYKRIVAYHAMQ-- 47 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGL 181 P + + + K V +PD D A+ LD + Sbjct: 48 ---HKPKQLLEGELEVEILIYKECLKSFSKRNMELAEIGQLRPVTKPDADNYAKGPLDAM 104 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAI 224 ++W DD Q+ DL ARK + P + + + G + Sbjct: 105 KGIIWKDDGQIVDLIARKYYSSK---PRIEITVRTLGEIQTEL 144 >UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G3Y0_NOVAD Length = 135 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 24/155 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + VPG P +G F+ + + IA A++ Sbjct: 1 MMEFSFTVPGVPVGKGRPRFVKA--------------TGRAYTPEKTASYESLIAYAASQ 46 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP---PAVKRPDLDKLARAVLDGLTD 183 AM A P+ + V P P+ K +PD D + +A+ D L Sbjct: 47 AMRGAQ----PINAPIGIKVQAVFPIPASWTKKRKESAVWHTSKPDGDNILKALGDALNG 102 Query: 184 VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 +VW DDSQV KV ++ PG H+ + + G Sbjct: 103 IVWADDSQVARTSIAKVYGDV---PGLHVFVEALG 134 >UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZCC2_EUBR3 Length = 149 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 50/161 (31%), Gaps = 25/161 (15%) Query: 65 NGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALAS 124 +Q+R +PG+P + F + + + + L Sbjct: 3 EDMKQIRFTIPGQPFGKQRPKFSRAGAYVK------------TYTPKETTSYENLVKLFY 50 Query: 125 ADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAV 177 +A + + + + P T K K+PD D + + V Sbjct: 51 NEAAKGK---MFPEGAMLDVRIIAYYEIPKSTSKKKRREMLEHRIRPTKKPDWDNIGKIV 107 Query: 178 LDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 D L V + DDS V D RK +E P + I G Sbjct: 108 CDSLNLVAYHDDSAVVDAQVRKFYSE---TPRIDVMIKVVG 145 >UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN Length = 145 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 27/160 (16%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ + P PQ F + ++++IA + Sbjct: 2 IKFTINIPPHPQERPRFRNAGNFVQ------------TYDPPKSKEYKKKIANVAKMY-- 47 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 P P++ L F + P K++ RPD+D +A+LD L Sbjct: 48 ---APGTPISTPIQIKLIFFVSIPKSKSKAWKQRALLGQEFPSVRPDIDNYVKAILDALN 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDE 222 +++ DD ++ +L A K ++L P + I + Sbjct: 105 GIMFSDDGKIVELIAYKRYSDL---PRTEVSITELVSEVQ 141 >UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas aeruginosa RepID=A6V3Y0_PSEA7 Length = 149 Score = 124 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 26/157 (16%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADA 127 R + VPG+P +G G G + A + +A+A+ +A Sbjct: 5 RPVVFTVPGEPVGKGRPR------------IGRVGAHARMFTPAKTVAYEGLVAMAAQEA 52 Query: 128 MLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDG 180 + L PV L P P K + D D +AV D Sbjct: 53 LAGRSL----IAGPVLIELRMFHPIPRSWSKKRQAMALVGEVMPTVKCDADNCLKAVCDA 108 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L V W DD+QV ++ K AE+ P ++I Sbjct: 109 LNGVAWKDDTQVVNVMLAKRYAEV---PRVEVKIVPL 142 >UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A4JMI5_BURVG Length = 158 Score = 122 bits (307), Expect = 8e-27, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 26/160 (16%) Query: 66 GGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 G R++ VPGKP +G F+ RGP + + + + +A+ Sbjct: 14 GARRVVFVVPGKPVAKGRPRFVR------------RGPHVRTYTPEPTERYENLVKMAAR 61 Query: 126 DAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVL 178 +AM + PVR + +P P+ + A K+PD D + +A+ Sbjct: 62 EAMRDSE----PYAGPVRLIVDIGVPIPASWSQRRQREAAAGVIGATKKPDADNVVKALK 117 Query: 179 DGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 DG+ VV+ DD QV DL K A PG + Sbjct: 118 DGMNGVVYGDDGQVVDLWVSKRYAT---TPGVRIEAIELN 154 >UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9K9_9FIRM Length = 135 Score = 122 bits (307), Expect = 8e-27, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 30/156 (19%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + V G P +G F + + + I A L Sbjct: 2 IEFCVFGDPRGKGRPRF-----------------RGHAYTDSKTRAYERMI----QGAFL 40 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-------PPAVKRPDLDKLARAVLDGLT 182 +G + +K PV + P+ K +K+PD D + + V D L Sbjct: 41 QSGESMFPEKVPVGVEVECYFRIPTSYSKRRKGLCRENLELPLKKPDGDNVLKIVCDALN 100 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 + + DD+QV D+ RK +RI Sbjct: 101 GLAYKDDTQVSDMIIRKRYGRNEGY--IRVRIWEVK 134 >UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KHD7_PSEPG Length = 146 Score = 122 bits (307), Expect = 8e-27, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 26/156 (16%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 + VPG+P +G G G + + IALA +AM Sbjct: 6 PVSFLVPGEPVGKGRPR------------IGKVGNHARMFTPQKTASYEGLIALAGTEAM 53 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGL 181 L + V + V+ P K K+PD+D + +A+ DGL Sbjct: 54 AGRTL----LEGAVMVEMRIVLAIPQSMSKKRKAMAIAGELFPTKKPDMDNVIKAIYDGL 109 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 VVW DD QV D RK E+ PG H+RI Sbjct: 110 NGVVWKDDVQVVDAFVRKRYGEV---PGVHVRIVPL 142 >UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q03G49_PEDPA Length = 139 Score = 122 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 27/154 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R+ V G+P PQG F G +++ + Sbjct: 2 IRIEVAGEPVPQGRPRFSGRGGFVR------------SYDPPKSKEYKKHVKEEVQQQYH 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 + + L+ P K + + D+D +AV D T Sbjct: 50 GK-----PLEGQLLVELSVYRPIQKSISKKERDMRLLGFHRPIVKGDIDNYFKAVTDACT 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 ++W+DD+Q+ K +E P M + Sbjct: 105 GLLWVDDAQIVSTKTNKYYSE---NPHVEMLVIP 135 >UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9_CLOBH Length = 133 Score = 122 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 42/154 (27%), Gaps = 29/154 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ + GKP + F + + + L Sbjct: 1 MKIVIDGKPMGKQRPRFNS--------------KTGNTYTPDKTVNYENWVKLCYQQQCK 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 V A + P T K +PD+D +A+ +LD L Sbjct: 47 GEK-----LTGEVVAFINAYYVIPKSTSKKNKKDMLAGIIRPTIKPDVDNIAKVILDSLN 101 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 + + DD Q+ K E P + + Sbjct: 102 GLAYKDDKQIVFCAISKWYGE---NPRVEVILEE 132 >UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 Length = 139 Score = 122 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 48/156 (30%), Gaps = 30/156 (19%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G+P + F K + + E I + Sbjct: 6 KVNFTIYGEPVGKERPRFNLATK--------------RTYTPNKTKSYEELIKWLYQSKV 51 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGL 181 + ++ +L K K+PD+D + + V D L Sbjct: 52 KH------YFEGYIKMTLRCYYSIAKSNSKKIKEQKRNNVLRPSKKPDIDNVIKVVADSL 105 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 + + DD+Q+ ++ A K ++ +P + + Sbjct: 106 NGIAYKDDTQIVEVVASKYYSD---KPRVEVILEDI 138 >UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteobacteria RepID=C1D8H9_LARHH Length = 145 Score = 120 bits (300), Expect = 5e-26, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 56/160 (35%), Gaps = 25/160 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 +R VPG P +G G + + IAL++ Sbjct: 1 MTIVRFEVPGTPVGKGRPKVST-----------RGGKFARMYTPEKTASYEGLIALSARQ 49 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLD 179 AM L PV SL + P+ K K+PD D + +AV D Sbjct: 50 AMGGRPL----IDGPVDVSLMIRLAVPASWSKKKQAAALAGQVLPTKKPDADNVLKAVFD 105 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 G+ VVW+DD Q + RK A Q PG + + G Sbjct: 106 GMNGVVWVDDVQACGVMLRKRYA---QTPGVTVVVRQMGG 142 >UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM18_PEDAC Length = 146 Score = 119 bits (299), Expect = 6e-26, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 27/154 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R+ VPG+P PQG F G +++++A A D Sbjct: 2 IRIEVPGEPVPQGRPRFSGRGGFVRS------------YDPPKSREYKKKVAAAVKDQYH 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 Y V L+ P K V + D+D +AV D T Sbjct: 50 GD-----PVDYAVHVQLSIYRPIQKSLSKKEREMRLLGFHRPVVKGDIDNYFKAVTDACT 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 ++W+DD+Q+ K +E P M + Sbjct: 105 GLLWVDDAQIVSTKTNKYYSE---DPHVEMLVMP 135 >UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia pseudomallei Pasteur 52237 RepID=A8HKV5_BURPS Length = 166 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 30/172 (17%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++ + +P +G + + + ++A + Sbjct: 2 NGEVHITLPFAAIGKGRPRVY----------------RGIASTPPKTRAYEHQVATLARA 45 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLD 179 AM L P+R + + P PK +PD+D A+A+LD Sbjct: 46 AMRGR----LPFDGPIRVLIEIDVEIPKTWPKYRRADALAGRVWPSVKPDIDNCAKAILD 101 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAAWQAAN 231 G+ + + DD+Q+ K A +Q + + +A + AN Sbjct: 102 GMNGIAYRDDTQIVIALLSKRYASDAQ---VRIAVEEIAGQTAQKSAQRRAN 150 >UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3R6_RUMGN Length = 136 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 27/154 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + + +PGKP + F + + + + +A ++ Sbjct: 1 MVITIPGKPVGKARPRFRRAGFKV------------ITYTPPENKKYEKEVARIYKQSI- 47 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 VL P+R + P P K K+PDLD +A+ +LDGL Sbjct: 48 ----GVLYTDIPLRVRILAKFPIPESWSKKNKEKALKGEIKPNKKPDLDNIAKIILDGLN 103 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 V + DD QV L KV ++ +P + IA Sbjct: 104 GVAYTDDKQVTSLEIEKVYSD---EPCVVVYIAE 134 >UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus RepID=B3XS14_LACRE Length = 149 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 27/155 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ +P Q +K V +++++ + Sbjct: 1 MKIIFNIEPVEQARPRATKTRKGIRL------------YDPKKVSTYKKQLGMMCKFQYK 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 P+ SL F S T K V +PD D ++ LDGL Sbjct: 49 DK-----PLDGPLIVSLKFYRHIQSSTSKKERELRITGAHRPVVKPDTDNYIKSTLDGLN 103 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 ++W DD+Q+ + A K ++ P + + Sbjct: 104 GLLWEDDNQIVKIVAEKYYSDR---PRIEIEVERL 135 >UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C6C Length = 164 Score = 116 bits (291), Expect = 5e-25, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 19/159 (11%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++L F+PG PAP GSK F+G K T+ ++ + WR + A+ + Sbjct: 2 NQRLSFFIPGVPAPGGSKRFVGIGKK-------TKRAILVDAAGQKNKDWRTAVGWAAHE 54 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY------TPPAVKRPDLDKLARAVLDG 180 +R + TF MPRP G + RPD KLAR+ D Sbjct: 55 HFKGEV-----LTGALRVTFTFFMPRPKGHHGKRGLLPSAPAFPITRPDALKLARSTEDA 109 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 LT +VW DD+QV D +K A+ S GC + I Sbjct: 110 LTGIVWRDDAQVVDGGQKKRYAD-SCSAGCLVEIEELAS 147 >UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3_9ACTO Length = 228 Score = 116 bits (291), Expect = 5e-25, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 13/163 (7%) Query: 62 YERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIA 121 Y N L V G P PQGSK +G+ ++ +++ESS V PWR+++ Sbjct: 72 YPWNTHPALTATVHGLPGPQGSKTPIGYGRSRTTGKT----IPLMRESSTKVKPWRDKVQ 127 Query: 122 LASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL 181 A A+ ++ PV A +TF MP+P PK PD+DKL R+ D + Sbjct: 128 AAITAALHTSA----PLAGPVYAHITFTMPKPVRAPKRRRTYPAVTPDIDKLERSTYDAI 183 Query: 182 T-DVVWLDDSQVDDLHARKVLAELS----QQPGCHMRIASPGW 219 T W DD V + HARKV + QPG +R+ + G Sbjct: 184 TKAAAWKDDGCVIESHARKVYPDEHPDALDQPGALIRLYTLGD 226 >UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P3C6_9CLOT Length = 144 Score = 116 bits (289), Expect = 9e-25, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 24/161 (14%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 +R VPG P + K GT + + I Sbjct: 1 METVRFTVPGAPKGKAR------AKTVRSKKGGTF-----SYTPEGTMLYENLIKCCYRQ 49 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLD 179 + + + P++ ++ P T K K+PD+D +A+++LD Sbjct: 50 ---ESNNIIFNDGQPLKVTIIAYYPIVKSTSKKKKQQMLEDLMFPTKKPDIDNIAKSILD 106 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWG 220 L + + DD+QV LH K AE P + I G Sbjct: 107 ALNKLAYRDDTQVVTLHMEKHYAE---DPRVEVEIEEIKNG 144 >UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcus pneumoniae RepID=C1CGH5_STRZJ Length = 143 Score = 116 bits (289), Expect = 9e-25, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 28/161 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ + +P PQ F RG + WR L A+ + Sbjct: 1 MKLTLNIEPKPQSRPRF------------ARRGSFTTTYEDKDMKTWRNHCQLLIANQYM 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP---------PAVKRPDLDKLARAVLDG 180 + +R L F + P K P K+PD+D +A+ D Sbjct: 49 GQP----ILEGALRTRLRFYIKPPQYISKVKKNQQALLDEIIPVGKKPDIDNYEKALYDS 104 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGD 221 ++ +V+ DD Q+ K + P + I Sbjct: 105 MSGIVFQDDGQIALHDVGKFYS---LNPRIEVEIEVMKSLS 142 >UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Streptococcus phage M102 RepID=A7DYE2_9CAUD Length = 145 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 28/160 (17%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 ++ + +P Q F + + + WR + + +A + Sbjct: 5 KIVINLEPKAQSRPRFARCGRGV------------VAYEKKEMRVWRAKCSELIEEAFRA 52 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV---------KRPDLDKLARAVLDGL 181 L + P++ +TF + P K+PD+D +A+LD + Sbjct: 53 EEL----MEGPLKIDVTFYILPPKYISSKKKLKEKLEAEEIFCDKKPDVDNYLKALLDSM 108 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGD 221 T V++ DD QV + ARK+ + +P I D Sbjct: 109 TGVIFKDDGQVVECRARKLYS---LKPRIEFEIKEMLDND 145 >UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCV3_9FIRM Length = 143 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 42/156 (26%), Gaps = 26/156 (16%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 VPGKP + RG + + + Sbjct: 1 MTTFSFTVPGKPFGKQRPKATR------------RGVHASVYTPKETVNYENLVVAM--- 45 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLD 179 VR ++ P K + +PDLD + + + D Sbjct: 46 -FKQKYPLDKPIDGEVRGTIRAFYQIPQSKSKKVKERMLNGEIKPMVKPDLDNIQKVIYD 104 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIA 215 L + + DDS + + K +++ P + I Sbjct: 105 ALNGIAYTDDSHIIAMRCAKFYSDV---PRVEVLIE 137 >UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus RepID=YQAN_BACSU Length = 142 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 29/157 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ V G+P QG R + A +++ +AL ++ Sbjct: 4 IKFTVYGEPVAQGRPR------------GSIRNGKVHMRDPAKSKYFKQYVALVASQ--- 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP---------PAVKRPDLDKLARAVLDG 180 P PV + P P S +PD+D + V D Sbjct: 49 --HRPETIITGPVSMDVKVYRPMPKSVSNSKKKKEKAEKGLLRPTTKPDVDNYVKGVKDA 106 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L +++ DDSQV DL K +E +P + I Sbjct: 107 LNHLIYKDDSQVVDLKVSKFYSE---EPRVEVMIREV 140 >UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IDV7_9CLOT Length = 158 Score = 114 bits (284), Expect = 3e-24, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 45/166 (27%), Gaps = 41/166 (24%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ +PG+P +G F + + + Sbjct: 16 IKLTIPGEPCAKGRPRVGKFG----------------TYTPEKTLNYETLVKELYIIQHA 59 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-----------------AVKRPDLDK 172 + + ++ + P G P K+PD D Sbjct: 60 NKK-----LQGQLKIDIKAYFKIPQGEIPKAKKPKPQTLQRYNDILNGKIRHTKKPDWDN 114 Query: 173 LARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 + + + D L + + DDSQ+ K + P + I+ Sbjct: 115 VGKIISDALNGLAYDDDSQIVSAIVEKFYSN---DPRVEVEISEVA 157 >UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJU5_9CAUD Length = 151 Score = 113 bits (283), Expect = 5e-24, Method: Composition-based stats. Identities = 54/147 (36%), Positives = 80/147 (54%), Gaps = 7/147 (4%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ FVPG APQGSK+ G ++++S + PWR + + + AM Sbjct: 2 EIDFFVPGLAAPQGSKNSY----TIRNKAGKVVGVNTVEQNSKTLRPWRADVKVFAQKAM 57 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPK-SYTPPAVKRPDLDKLARAVLDGLTDVVWL 187 G + D + FVM RPSGTPK TPPAVK+PDLDKL RA+ D L V+ Sbjct: 58 QERGQQICDD--AIYLHCDFVMKRPSGTPKTRRTPPAVKKPDLDKLIRAIGDALKGTVYT 115 Query: 188 DDSQVDDLHARKVLAELSQQPGCHMRI 214 +DS++ ++ A K +AE+ + PG + + Sbjct: 116 EDSRIVEIRATKRIAEIGETPGVFIHV 142 >UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter sphaeroides ATCC 17029 RepID=A3PHF9_RHOS1 Length = 144 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 32/170 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + +PGKP + +F + A + + + Sbjct: 2 VSFVIPGKPFAKQRHNFS--------------RATGRAFTPKATVSFESTVRDIALPKF- 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-----PPAVKRPDLDKLARAVLDGLTDV 184 + PV + PK P ++PDLD + +++LDGL + Sbjct: 47 -----PRPLEGPVSIRIEATFVPAPSWPKKRRLACLGQPHTQKPDLDNVEKSILDGLNRI 101 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAAWQAANGGA 234 + DDSQV + K ++Q + + G + +WQAA A Sbjct: 102 AFADDSQVARVVKEKRWGPVAQT---VVVVEPLG----PLPSWQAAEAVA 144 >UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65KQ9_BACLD Length = 140 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 12/137 (8%) Query: 88 GFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLT 147 P G+ T + +++ +++ I L + M L P + Sbjct: 5 NIPVEPMGAVRMTGRGKFVNKNAQRYLAYKDFIKLHAQKQMKGQQL----YTGPTVVKVL 60 Query: 148 FVMPRPSGTPKSYTPP-----AVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLA 202 F MP P K +K+PD+D L + V D L W DD+QV + KV Sbjct: 61 FSMPIPKSWSKKKQQEAISTVHIKKPDIDNLVKGVFDALNKTAWHDDNQVFMVIGAKVYG 120 Query: 203 ELSQQPGCHMRIASPGW 219 ++PG ++I Sbjct: 121 ---KEPGIEVQIMGLAE 134 >UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillus crispatus RepID=C7Y630_9LACO Length = 161 Score = 110 bits (275), Expect = 4e-23, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 42/169 (24%), Gaps = 39/169 (23%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +PG+P + + + A + + + + A Sbjct: 6 IKFVIPGEPQSKERPRTVRRAGGVR------------TYTPAKTHRYEDIVRYFAVYA-R 52 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 S+ P K K+PD D +A+ + DG+ Sbjct: 53 KEHKISEPINSQCGVSIKAYFGIPKSFSKKRRELCLKGKERPTKKPDSDNIAKIIFDGMN 112 Query: 183 ----------------DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIA 215 D + DD + K + P + + Sbjct: 113 PKMKLNKALHKKMVLQDGFYEDDKLIVTHSVEKWYS---MHPHVEVTVT 158 >UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillus jensenii SJ-7A-US RepID=D0DND1_9LACO Length = 135 Score = 110 bits (274), Expect = 5e-23, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 29/156 (18%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + GKP + + + ++A +++ A Sbjct: 2 EISFSIDGKPFGKERPRPNRTGHGV--------------YTPERTKMYEYKVAQSASLAF 47 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGL 181 +R ++ K + PD D +A+AVLDG+ Sbjct: 48 FDE-----PLDSDIRVCISAYFGVAKSDSKRKKQAKISGEIRPARTPDADNIAKAVLDGM 102 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 VV+ DD QV +L K AE +P + + Sbjct: 103 NGVVYKDDKQVIELKVTKQYAE---KPRVDVSVEEI 135 >UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Tax=Corynebacterium jeikeium ATCC 43734 RepID=C8RQI5_CORJE Length = 143 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 67/147 (45%), Gaps = 17/147 (11%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 L FVPG APQGSK+ + +L ESS V PWR+ ++ + Sbjct: 8 LTFFVPGIAAPQGSKNAYRRGQKI-----------VLVESSKKVKPWRDTVSQVARFVCK 56 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 V ++ FVMPR PP V++PDLDK+ RAV D LT + + DD Sbjct: 57 ------RPIDGAVTVAVHFVMPRTKAMRDKPAPPMVQKPDLDKMLRAVNDALTGIAYADD 110 Query: 190 SQVDDLHARKVLAELSQQPGCHMRIAS 216 SQ+ L K A ++ G H+ I Sbjct: 111 SQIVRLTGSKRRAAPGEKTGAHITITP 137 >UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM15_PEDAC Length = 148 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 30/155 (19%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ + G+P + +++R L + Sbjct: 17 IKLVIDGEPVAASRPRVTR---------------KGWAYIAPKYKAYKDRTHLIVKNQYK 61 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 ++ TF K+ + +PD+D L +AV D T Sbjct: 62 GE-----PLMGALKVKTTFYRSVQKSVSKAERNRRLSNEHRPIFKPDIDNLFKAVTDACT 116 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 VVW DD+Q+ + K+ AE +P M + Sbjct: 117 GVVWHDDNQIVSVEMDKMYAE---EPRVEMEVHEL 148 >UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JU78_BURP8 Length = 180 Score = 107 bits (266), Expect = 4e-22, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 50/158 (31%), Gaps = 30/158 (18%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ V G P + + + + + AM Sbjct: 23 RVSFTVEGVPVGKARARVTRNG----------------TYTPKKTRRYEHDVRTVAMQAM 66 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGL 181 + + V SL +P P K+ V RPDLD +AV D L Sbjct: 67 ----GALRPCRDAVHVSLVVFLPVPERFSKAKRAAALAGLVYPVVRPDLDNFEKAVTDAL 122 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 VV+ DDSQ+ D+ K ++ P + AS Sbjct: 123 NGVVYHDDSQICDVVKSKRYSDR---PRVVIECASING 157 >UniRef50_C0X7X1 Possible crossover junction endodeoxyribonuclease RusA n=37 Tax=root RepID=C0X7X1_ENTFA Length = 144 Score = 106 bits (265), Expect = 5e-22, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 29/160 (18%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++R+ +P +P PQ F + +A+ +++++ + Sbjct: 1 MEEMRIILPIEPKPQSRPRFARRGNYVQ------------TYEDSAMRAYKQKVKVYLRK 48 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGT---------PKSYTPPAVKRPDLDKLARAV 177 A P L +K P+ A +TF + P K K+PDLD +AV Sbjct: 49 A-----KPKLIEKGPIMAHVTFYVQAPKSALSNKQKRLDVKLERKYCDKKPDLDNYFKAV 103 Query: 178 LDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 D +++ +D Q+ + +K+ + + I S Sbjct: 104 TDAAEGILYKNDGQIAVMVCQKLYSMRQ---RTEIEIMSL 140 >UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LU68_9FIRM Length = 140 Score = 106 bits (264), Expect = 7e-22, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 28/153 (18%) Query: 73 FVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAG 132 V G P QG F + A ++ + + +A Sbjct: 7 VVLGDPVAQGRPRFSRQGGFVKA------------YDPAKSRDYKSYVRMIAAQ-----H 49 Query: 133 LPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLTDVV 185 PV + + SL P G PK V +PD+ + + V D L V Sbjct: 50 APVTPVEGAIEFSLRIYRAIPKGMPKYKREAAKEGRLRPVTKPDVSNVLKGVEDALKGVW 109 Query: 186 WLDDSQVDDLHA-RKVLAELSQQPGCHMRIASP 217 + DDSQ+ K E P + + Sbjct: 110 YKDDSQIVGYGVLGKWYDER---PRIEIMMREL 139 >UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G1B4_9FIRM Length = 155 Score = 106 bits (264), Expect = 7e-22, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 23/160 (14%) Query: 64 RNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 R G + + VPGKP + K G I + + I Sbjct: 9 RAGMQSVTFQVPGKPQGKAR------AKTVRNKSTG----NIHSYTPEKDMLYENYIKAQ 58 Query: 124 SADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY-------TPPAVKRPDLDKLARA 176 + L++ PV + P K +K+PD+D + + Sbjct: 59 FQNRANGF---YLERGKPVMLRIIARFLPPKSVSKKRQLDMLEGRELPLKKPDIDNIVKV 115 Query: 177 VLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 V D L V + DD+Q+ + A K + + G + + Sbjct: 116 VADALNGVAYHDDTQIAMVIAAKTYSAME---GLDITVEE 152 >UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6N6_9BACT Length = 154 Score = 106 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 60/163 (36%), Gaps = 26/163 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + + FV G P Q F + A E W+ RIA+A+ Sbjct: 2 NKPIVFFVSGDPKGQPRPR--AFARRVGNKFVARVFDAGTAEG------WKSRIAVAAK- 52 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP----------PAVKRPDLDKLARA 176 + P PVR L F PRP ++ + +PD D LA+A Sbjct: 53 ----SLTPAQPYTDPVRVRLHFFFPRPKAHFRTGKNAHLMRDDAPSYHIAKPDCDNLAKA 108 Query: 177 VLDGLT--DVVWLDDSQVDDLHARKVL-AELSQQPGCHMRIAS 216 VLD +T W DD QV L K + + PG ++ ++ Sbjct: 109 VLDAMTQLGGWWGDDQQVASLAVCKSYVSTIQLHPGVNISVSQ 151 >UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4F4F8 Length = 171 Score = 103 bits (257), Expect = 4e-21, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 11/161 (6%) Query: 62 YERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIA 121 Y+ + L + V G PQGSK +G+ ++ + + ++KESSA V PWR++++ Sbjct: 12 YDWDPVPALAIAVYGTAGPQGSKSPVGWGRSRKTG----KNIPLMKESSAKVKPWRDKVS 67 Query: 122 LASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL 181 A A+L V A +TF M +P PK PD+DKL RA D + Sbjct: 68 AAITAAILRGDAK--PLHGAVYAEITFTMAKPGSRPKRRRTYPAVSPDIDKLERATYDAI 125 Query: 182 TDV-VWLDDSQVDDLHARKVL----AELSQQPGCHMRIASP 217 T W DD +V + H RKV + QPG +R+ + Sbjct: 126 TTAKAWEDDGRVIENHNRKVYPGEHPDALDQPGAVIRLYTL 166 >UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales RepID=B1M2L8_METRJ Length = 152 Score = 103 bits (257), Expect = 4e-21, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 53/167 (31%), Gaps = 23/167 (13%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 L + +PG P +G + I + + LA+ Sbjct: 2 SETLIIRLPGAPRGKGRHRAQLVHRG--------GVARIHSHPDQKTEAYESALRLAAGA 53 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKS-------YTPPAVKRPDLDKLARAVLD 179 M L P+ + MP P+ K +PD D +A+ V D Sbjct: 54 VMRGRAL----LTGPLEVRIFATMPIPASWSKRKRLDAIERRLRPTTKPDWDNIAK-VSD 108 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAA 226 L VVW DD+ V D RK E P +++ + AA Sbjct: 109 ALNHVVWADDASVVDGLVRKFYGE---TPELVIQVTALEPQAVRAAA 152 >UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Tax=Lactobacillaceae RepID=C7TBL4_LACRG Length = 113 Score = 103 bits (256), Expect = 6e-21, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 16/121 (13%) Query: 104 AILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG-------T 156 +++ + +++ L + P+R S+ Sbjct: 1 MGHAYDPTKSRNYKQHVKSVASE------LNIEPLSGPIRVSMEIYRQLQKSGSKALIRR 54 Query: 157 PKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 K +PD+D ++V D LT ++W DD+Q+ ++H K ++ QP + Sbjct: 55 KKEGKVRPTVKPDVDNYYKSVSDALTGILWEDDNQIVEIHVGKWYSD---QPRVEIEAEE 111 Query: 217 P 217 Sbjct: 112 I 112 >UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Y8_MAGSA Length = 134 Score = 103 bits (256), Expect = 6e-21, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 27/150 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + + +PG+ +G + A IA + DAM Sbjct: 3 VVVTIPGEVTGKGRPRIW----------------NGRAVTPAKTRSKEGVIASLAMDAMG 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-------PPAVKRPDLDKLARAVLDGLT 182 PV ++ V+P + K K+PDLD + + VLD + Sbjct: 47 G----CDPLTGPVLVTIEAVLPVATSWSKKRRAAALDGTEQPTKKPDLDNVVKLVLDAVN 102 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHM 212 +V+ DD+Q+ + A K +Q + Sbjct: 103 GIVFADDAQITHIIASKRYGVFAQTTLTVV 132 >UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4ZC15_9CAUD Length = 138 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 29/143 (20%) Query: 76 GKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPV 135 G P F G +P ++ LP Sbjct: 18 GNPKGSSRPRFSGGGHTYMPAP------------------------YVKHKKFVADQLPH 53 Query: 136 LDKKYPVRASLTFVMPRPSGTPKSYTP-----PAVKRPDLDKLARAVLDGLTDVVWLDDS 190 L P+R ++ F PK P +PD+D L + +LD +++W+DD+ Sbjct: 54 LMIDKPIRLTVEFYFKPSKSWPKYKKEACIGNPHTIKPDIDNLLKTILDAGNNLLWVDDT 113 Query: 191 QVDDLHARKVLAELSQQPGCHMR 213 + ++ K AE ++ + Sbjct: 114 LIYEIRTFKKYAETARTVLTIIE 136 >UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes RepID=C2E9I5_9LACO Length = 159 Score = 102 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 6/134 (4%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 F + + + + P + + A L P P+R Sbjct: 23 FFVALEDVPTCTHQQKKVRVNRGIPIFYEPEKLKKTRALLMERLDEHKPDEPMHGPLRLV 82 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAEL 204 +T+ + +PD+D + + + D +T + W DD V L + K A++ Sbjct: 83 VTWCFKKKGKHVDG--EYKTTKPDVDNMLKLLQDCMTRLGFWDDDRFVVSLISEKYWADV 140 Query: 205 SQQPGCHMRIASPG 218 PG ++ I Sbjct: 141 ---PGIYIEIKEMN 151 >UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q044S5_LACGA Length = 153 Score = 101 bits (250), Expect = 3e-20, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 46/171 (26%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G P + + + A + + + + ++ Sbjct: 2 RVNFTIEGPPIGKARPRVT----------------RTVTYTPAKTARYEDLVRYTAINSF 45 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-------PPAVKRPDLDKLARAVLDGL 181 + DK P+ + P K K+PD D + + ++DG+ Sbjct: 46 KG----IFDKDEPLDVKIMAYFEVPKSLSKKRKALCLANQELPTKKPDADNVGKIIMDGM 101 Query: 182 T----------------DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 V+ DD QV L +K AE + +RI Sbjct: 102 NPKMRRDKRLHKMVEVMRGVYHDDKQVTTLLVKKRYAERA---RVDVRIKR 149 >UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7_STAAE Length = 135 Score = 99.5 bits (246), Expect = 8e-20, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 29/145 (20%) Query: 78 PAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLD 137 P F + + A A + +P L+ Sbjct: 14 PMGSPRPRFRNTGRFVQ------------TYMPTAYTN---------HKAYIQGQMPKLN 52 Query: 138 KKYPVRASLTFVMPRPSGTPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQV 192 + ++ L F P K V +PD+D L + VLD VW DD+Q+ Sbjct: 53 LERALKIELDFYFPLLKSWSKKKKSEMVGQYKVTKPDIDNLIKTVLDACNGHVWKDDNQI 112 Query: 193 DDLHARKVLAELSQQPGCHMRIASP 217 ++ + K +P MR+ Sbjct: 113 TEITSSKRYG---LEPKIIMRVEEV 134 >UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3762E Length = 131 Score = 98.3 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 6/131 (4%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 F + + A A LS P ++ + Sbjct: 5 FMNMIPPTSTQQERGCTIINGKRKYYDRGNSDAHQKLKAYLSQHRPGAPLTGALQVVTKW 64 Query: 149 VMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQ 207 P + P +PD D L +A D +T++ W DD Q+ K A Q+ Sbjct: 65 CFPIKAKHHDG--EPYTNKPDADNLCKAFYDIMTELGYWKDDKQIYSSITEKFWA---QR 119 Query: 208 PGCHMRIASPG 218 PG +++I Sbjct: 120 PGIYVKIEEVK 130 >UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscillatoriales RepID=A0YIY0_9CYAN Length = 322 Score = 97.9 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 39/160 (24%), Gaps = 32/160 (20%) Query: 62 YERNGGRQ-LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERI 120 YE N +R +PG P+ WR R Sbjct: 191 YEPNSTENLVRFCIPGTVVPKARPRVTSNG----------------TYMPNRYREWRNRA 234 Query: 121 ALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDG 180 + M V SL F DLD +A A LD Sbjct: 235 EIELYRQMSQFHSTHKFPLQKVAVSLRFF------------GNHRTNSDLDNMAGACLDA 282 Query: 181 LT---DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 LT V +DD +++ G + I Sbjct: 283 LTLNGAGVLMDDRLSCLPRLTVEYVSGTKETGVWIEIQPL 322 >UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB Length = 137 Score = 97.5 bits (241), Expect = 3e-19, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 6/133 (4%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 F + + ++ P + A ++L+ +P P+R + Sbjct: 10 FFLPMDKIPTTTHQQKKVTVINGKPHFYEPESLKNARDKFTSLLAQHVPPSKLDGPIRLT 69 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAEL 204 + ++ P+ G+ +PD D L + + D +T++ W DD+QV K A+ Sbjct: 70 VKWLFPKIKGSTNG--QYKTTKPDTDNLQKLLKDCMTELGFWNDDAQVASEIIEKFWAD- 126 Query: 205 SQQPGCHMRIASP 217 G ++++ Sbjct: 127 --TVGIYVKVEEL 137 >UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C2M4_THAPS Length = 243 Score = 97.5 bits (241), Expect = 3e-19, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 23/174 (13%) Query: 67 GRQLRMFVPGKPAPQGSKDF-MGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 + ++ + G P P GF P + ++L P + Sbjct: 75 TKGIKFTIRGNPKPLVRHRSSRGFMYNPSSAAQERFRDSLLSMLPRRYHP-----TILDD 129 Query: 126 DAMLSAGLPVLDKKYP----VRASLTFVMPRPSGTPKSYTP------------PAVKRPD 169 +M V + + + +TF + RP P R D Sbjct: 130 QSMDDGKAAVPNVLFSQHEFLAMEVTFRLKRPKNHFVGNKPGTGRMKPTAPGKFHNSRTD 189 Query: 170 LDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGC-HMRIASPGWGDE 222 +D L + V+D L ++++DD QV L A K+L G ++I + Sbjct: 190 IDNLTKFVMDSLNGLLYVDDKQVVSLSAIKLLDSEGLCEGATDVKITVVKDENA 243 >UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepID=B8I135_CLOCE Length = 136 Score = 97.5 bits (241), Expect = 3e-19, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 6/133 (4%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 F K + ++ P + + A A A L+ +P PVR Sbjct: 8 FFLPMKKVPTVTHQEKQVKVVNGKPVFYEPDKLKAARAKLQAHLAKYVPDKPYTGPVRLM 67 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAEL 204 + + P +PD D L + + D +TD+ W DD+ V K AE+ Sbjct: 68 VKWCFPVTGKH--KNGEYKTSKPDTDNLQKLLKDVMTDLRFWKDDALVASEIVEKFWAEV 125 Query: 205 SQQPGCHMRIASP 217 PG + I Sbjct: 126 ---PGIFIAIEEL 135 >UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7B8_9ACTN Length = 125 Score = 95.6 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 108 ESSAAVGPWRERIALASADAMLSAGLPV----LDKKYPVRASLTFVMPRPSGTPKSY-TP 162 + I A+ DAM A + + PV + P P PK + Sbjct: 2 YTPDETIRNEAAIRDAALDAMREAYPELEGLLFPFRVPVAVRIDVYEPLPKSRPKRTVSE 61 Query: 163 PAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDE 222 P +PD D +A+ V+DG+ VVW DDSQV ++H K +P +++ GW D Sbjct: 62 PNTFKPDADNIAKLVMDGMNGVVWGDDSQVAEVHVVKWPRRRGIEPHMDIQVYR-GWADP 120 Query: 223 A 223 A Sbjct: 121 A 121 >UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A6QIJ7_STAAE Length = 138 Score = 95.6 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 29/145 (20%) Query: 78 PAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLD 137 P F T+G ++ L +P L+ Sbjct: 18 PMGSPRPRFS------------TKGRYAHTYMPTKYTEHKK---------YLQNQMPKLN 56 Query: 138 KKYPVRASLTFVM-----PRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQV 192 + ++ L F ++ V +PD+D L + VLD + +W DD+Q+ Sbjct: 57 LENALKIELEFYFTPPKSWSKKKKTQAIGQLKVTKPDIDNLMKTVLDACNNYLWKDDNQI 116 Query: 193 DDLHARKVLAELSQQPGCHMRIASP 217 ++ + K +P +RI Sbjct: 117 AEITSSKRYG---IEPKIIIRIEEI 138 >UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA family n=2 Tax=Viruses RepID=C5VUH2_9VIRU Length = 215 Score = 94.8 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 45/165 (27%), Gaps = 21/165 (12%) Query: 57 SARVTYERNGGRQL-RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGP 115 R + N + + ++ P P S + + + G + P + ++ Sbjct: 8 KRRCCFISNTKKPILKLVSPIPP----SVNHYLAPRPFIMTKNGKKVPMVTMYETSEAKK 63 Query: 116 WRER-IALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLA 174 +++ I + K F R D Sbjct: 64 YKKEFIKYVKEEVRKQKWDITCTKDKHFYFDTIFHFDRVDK-------------DEQNYY 110 Query: 175 RAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 + + D L + ++DD + K+ S P + I + Sbjct: 111 KCLCDALNGLAYIDDRNIL-TRCFKI-DYDSINPRIEITIHPVDY 153 >UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteriaceae RepID=A4WB46_ENT38 Length = 151 Score = 94.8 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 10/133 (7%) Query: 79 APQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDK 138 P + F F + + P + A W++R + A + + Sbjct: 12 IPPNHRAFPAFPRVVQIMKVYNILPMGKPRMTRADK-WKKRPEVMRYRAFCDHVRLLGVE 70 Query: 139 KYPVRASLTFVMPRPSGTPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVD 193 + +TF++P P K P +PD D L +A++D + + DD+ + Sbjct: 71 LPEANSHVTFILPMPQSWSKKKRLEYNGKPHQGKPDFDNLMKALMDAI----FEDDAHIW 126 Query: 194 DLHARKVLAELSQ 206 D K+ E + Sbjct: 127 DARVTKLWGEEGK 139 >UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1U6_DESRM Length = 114 Score = 94.5 bits (233), Expect = 3e-18, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 42/150 (28%), Gaps = 37/150 (24%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + VPG+P P+ G + + + L +++ Sbjct: 1 MHFTVPGRPVPKYRPRV---------------GKHGNIYTPQNCREYERTVGLYASNVF- 44 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 PV + F R G DLD +A+ DGL + W DD Sbjct: 45 -----PQPLTGPVTLGVKFYFSRRPG-------------DLDNYVKAISDGLNGIAWQDD 86 Query: 190 SQVDDLHARKVLAELSQQPGCHMRIASPGW 219 QV L A + + G Sbjct: 87 RQVVKLFASLKRGSPE---RAEVVVQRIGN 113 >UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Tax=Clostridium RepID=Q0TSJ9_CLOP1 Length = 128 Score = 93.3 bits (230), Expect = 6e-18, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 16/134 (11%) Query: 90 KKAPEGSPPGTRGPAILKE---SSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASL 146 G G P + + + + + + + ++A + Sbjct: 1 MVVVTGKIRGKARPRVCRGHAFTPKDTIEYEKLVRECYKKQ------DGRYLEGAIKALI 54 Query: 147 TFVMPRPSGTPKSY-------TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARK 199 P K K+PD D + + +LD L V + DDSQ+ DL +K Sbjct: 55 IAYYKIPKSYTKKRVQVIRDGLEKPTKKPDADNIGKVILDSLNGVAYKDDSQIIDLRIKK 114 Query: 200 VLAELSQQPGCHMR 213 E ++ R Sbjct: 115 EYTEELERVEFEFR 128 >UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7S400_PHATR Length = 157 Score = 92.9 bits (229), Expect = 7e-18, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 31/161 (19%) Query: 64 RNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 R+ GR + +++ GKP P + +P ++ + + + Sbjct: 10 RDTGRPIDVYIEGKPIPMPRPR---LGRGIWFNP-----------ATRQLKEFSK----- 50 Query: 124 SADAMLSAGLPVLDKKYPVRASLTFVMPRPSG-----------TPKSYTPPAVKRPDLDK 172 A+L V + + +L F + RP+ P P +PD+D Sbjct: 51 KLQALLPEDGVVFPRGECLEVNLFFYIRRPNSDYDGNKRINALKPGRANPFETVKPDIDN 110 Query: 173 LARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMR 213 LA+ LD + +V+ DDSQV L K+ +R Sbjct: 111 LAKFTLDAMQGIVFHDDSQVVKLLVYKLRGNEGGT-RIKVR 150 >UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BFH9_CLOPE Length = 131 Score = 92.9 bits (229), Expect = 8e-18, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 41/155 (26%), Gaps = 31/155 (20%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ V GK + + + + + + Sbjct: 1 MKVVVTGKIRGKARPRVC----------------RGHAFTPKDTVQYEKLVRDCYQEQ-- 42 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSY-------TPPAVKRPDLDKLARAVLDGLT 182 + ++ + P K K+PD D + + +LD L Sbjct: 43 ----DGRYLEGSIKVLIVAYYKIPKSYSKKRVQAIRDGLEKPRKKPDADNIGKIILDSLN 98 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 + + DD+ V D K E + ++ Sbjct: 99 GIAYKDDAYVADFRVIKEYTEELE--RVEFELSEV 131 >UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FRX1_PHATR Length = 386 Score = 92.5 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 22/164 (13%) Query: 64 RNGGRQLRMFVPGKPAPQGSKD-FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIAL 122 N ++ V G P P GF P + + S V +R+ + L Sbjct: 202 SNVTGRVAFTVRGNPLPLRRHRTARGFVYNPSAKAQESFRDIV----SHMVTGFRDELHL 257 Query: 123 ASADAM-LSAGLPVLDKKYPVRASLTFVMPRPSGT-------------PKSYTPPAVKRP 168 + ++AG+P + + ++ F M RP+ T P+V P Sbjct: 258 LKGTHLPIAAGVPFFPEGQALVMTILFSMKRPNNHFVANRRGMLEDGCRLKATAPSVTSP 317 Query: 169 ---DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPG 209 D+D LA+ VLD +++ DD QV LH KVL E G Sbjct: 318 TRTDVDNLAKFVLDSCNGLLYEDDRQVISLHVTKVLDEQGTCLG 361 >UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD Length = 146 Score = 91.4 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 43/168 (25%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +P +P PQ F + + WR+++ + Sbjct: 2 VKFTIPIEPKPQKRPRFSRWSG---------------AYEDKDMMAWRKQVTDYVKNNYE 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV------------------KRPDLD 171 ++ +TF + P K + A K+PDLD Sbjct: 47 G-----PYFDDGLKVDVTFYLKAPELVSKKPSERARDKTKQKYQDYINELLYVPKKPDLD 101 Query: 172 KLARAVLDGLTD--VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L +AV D ++ VVW DD+ + + RK+ + P ++I Sbjct: 102 NLEKAVYDSISKSEVVWTDDNIIVEHTTRKLYS---PNPRIEVKINEL 146 >UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8E1_9ACTN Length = 152 Score = 90.2 bits (222), Expect = 5e-17, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 19/126 (15%) Query: 75 PGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLP 134 P + +G F + + I + + +G Sbjct: 17 PAEIVGKGRPRFTRSGR---------------TYTPRKTKRAELAIRD---EFLRVSGDR 58 Query: 135 VLDKKYPVRASLTFVMPRPSGTPKSYTPPA-VKRPDLDKLARAVLDGLTDVVWLDDSQVD 193 + PV + + PK + A +PDLD + VLD L + ++DDSQV Sbjct: 59 WAKFRGPVSVHIIYGRELAKSNPKFWAGRADTGKPDLDNCGKLVLDALNGIAFMDDSQVV 118 Query: 194 DLHARK 199 ++ K Sbjct: 119 NMTIAK 124 >UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA family protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L7A6_RUMHA Length = 192 Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 26/155 (16%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPW-RERIALASAD 126 +L P P S + + P + + + + I L + Sbjct: 3 EKLVFTSPIPP----SVNHYLAYRTI----IKNGKPMAMSYKTKEAKDYQKNIIELIKKE 54 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD--V 184 + +K + F PR D + + + D +TD + Sbjct: 55 VEKQRWVKSDNKFQHYYMDVVFYFPR-------------VDMDANNYFKCLADAITDTEL 101 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 VW+DD+Q+ + + P + I + Sbjct: 102 VWIDDTQLCERVMGIYYDN--KNPRMEIEIKPVNY 134 >UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteriaceae RepID=A4W6Z5_ENT38 Length = 119 Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 10/116 (8%) Query: 96 SPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG 155 P + A W+ R A+ A A +TFVMP P+ Sbjct: 1 MRTYDITPLGKPRMTRADK-WKTRPAVMRYRAFCDEARLRRIHLPESGAHVTFVMPMPTS 59 Query: 156 TPKSYTP-----PAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 K P +PD D + +A++D L + DDS V D K+ E Q Sbjct: 60 WSKKKREQFDGKPHQSKPDCDNMLKALMDAL----FDDDSSVWDCRITKLWGEKGQ 111 >UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WLT7_EGGLE Length = 141 Score = 87.1 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 8/134 (5%) Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRER-------IALASADAMLSAGLPVLDKKYPV 142 ++ P R + PW+ + A + L + PV Sbjct: 3 RQTLINFVPVKRRVKLEFRGKCTSCPWKLKGCHVYTPQATIDEERALGQAYKGPRHEGPV 62 Query: 143 RASLTFVMPRPSGTPKSY-TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVL 201 + P PK P PD+D +A+AVLDGL + + DD QV +LH K Sbjct: 63 SVRIDVFRVLPGSRPKRVLGEPDTMTPDIDNIAKAVLDGLNGIAYDDDKQVVELHVYKHD 122 Query: 202 AELSQQPGCHMRIA 215 E + + Sbjct: 123 RERRVGDSVRISVE 136 >UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=13 Tax=root RepID=RUSA_BPR1T Length = 131 Score = 85.6 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 6/125 (4%) Query: 94 EGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRP 153 + +G +K A M + +K P++ S+TF Sbjct: 12 MPTTQQQKGIKKVKGKLQFYDRRGTNNYSLKAQLMKNKPKECFEKNVPLKLSVTFFYAIK 71 Query: 154 SGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCHM 212 K + RPDLD L + + D +T + + DDSQ+ L A+KV E + + Sbjct: 72 QK--KRWWQWKTSRPDLDNLMKNLQDYMTKLRYYSDDSQIVWLEAKKVNDEKN---RIEI 126 Query: 213 RIASP 217 I Sbjct: 127 EITEV 131 >UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A2M1_BIFAD Length = 173 Score = 84.1 bits (206), Expect = 4e-15, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 43/162 (26%), Gaps = 44/162 (27%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 +PG+P +G F G++ + E + M Sbjct: 7 DFDIPGEPVAKGRPRFYGYRAV----------------TPQHTRDAEELVRN--QFHMFY 48 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDS 190 V L F R +PDLD L + V D L + ++DD Sbjct: 49 PHA--EPLDGDVMMILMFYKGRH------------GKPDLDNLEKLVKDALNGLAYVDDQ 94 Query: 191 QVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAAWQAANG 232 QV + + WG A + G Sbjct: 95 QVKLTLCAMLEPDR------------MAWGQRAKRLVKRRQG 124 >UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter formigenes RepID=C3X8S6_OXAFO Length = 222 Score = 83.3 bits (204), Expect = 6e-15, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 45/148 (30%), Gaps = 14/148 (9%) Query: 84 KDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVR 143 + + P + S ++ R+ A+ +A + V Sbjct: 7 PYPISANRYWRTYLPRGCAAPVTTVSP-EARAYQNRVRRAAREA-----GVLCPFPGRVA 60 Query: 144 ASLTFVMPRPSGTPKS------YTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHA 197 S RP + +V+ DLD + + D + +V+ +D+ + + Sbjct: 61 VSYVLYPKRPLDWVRRQRMNPARWDDSVQCMDLDNAQKVLFDAMEGIVYENDNLIRRIEG 120 Query: 198 RKVLAELSQQPGCHMRIASPGWGDEAIA 225 + + + + + E +A Sbjct: 121 ERAVPD--GDARVLVTVEPIEDLVEPVA 146 >UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B534_METEA Length = 225 Score = 83.3 bits (204), Expect = 7e-15, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 47/167 (28%), Gaps = 30/167 (17%) Query: 68 RQLRMFVPGKPAPQGSKD------------------FMGFKKAPEGSPPGTRGPAILKES 109 ++ V +P P+ F G T + Sbjct: 53 PEISFAVSLEPRPKERPRTFLPPAELARAFAAAQGNPNRFLSIVRGGDEDT-RIRHHTYT 111 Query: 110 SAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPD 169 + + +A A AM P+ SL P D Sbjct: 112 PKETAAFESAVRMAGAAAMRGRE--------PIAVSLGIDAILAFDGDAGLWPTDNTDGD 163 Query: 170 LDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 LD L +AVLD + VV+ DD V ++ K+ P +R+ Sbjct: 164 LDNLVKAVLDAVNGVVFKDDRLVVEMRLAKI---CLPSPAIALRVRP 207 >UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Y4_STRSW Length = 161 Score = 82.9 bits (203), Expect = 9e-15, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 62/168 (36%), Gaps = 29/168 (17%) Query: 66 GGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 L + V G PAPQGSK+ L ESSAAV PWRE + A+ Sbjct: 2 TAPALLLTVYGTPAPQGSKN--------------RNRAGALYESSAAVKPWREAVKTAAL 47 Query: 126 DAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT----------PPAVKRPDLDKLAR 175 DA L PV F + RP + PDLDKL R Sbjct: 48 DA-LHHDDGWTALSCPVWLDAQFTLRRPKHHYGTGRNAGRLKPSAPAYPTGTPDLDKLVR 106 Query: 176 AVLDGLTD-VVWLDDSQVDDLHARKVL---AELSQQPGCHMRIASPGW 219 D L D V DDS V L A KV + + PG +R+ Sbjct: 107 CTQDALKDAGVLADDSVVASLSASKVYVLWGDALRTPGAVIRVWRLND 154 >UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetobacter pasteurianus RepID=C7JFF8_ACEP3 Length = 151 Score = 82.1 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 28/131 (21%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 R+ +PG +G F + A + I + + + Sbjct: 41 RLTIPGLLRAKGRPRF----------------GNGRTFTYAKTVQAEKHIQRHAIEQI-- 82 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLTD 183 G P P+ SL + P + T RPD+D + D L Sbjct: 83 -GKPC--LTGPLHVSLMINIAPPPSWSRKKTADALAGRILPTSRPDIDNQMKTAADALNG 139 Query: 184 VVWLDDSQVDD 194 + W DD+Q+ D Sbjct: 140 IAWKDDAQIVD 150 >UniRef50_C2LH12 Endodeoxyribonuclease RusA n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LH12_PROMI Length = 131 Score = 81.4 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%) Query: 115 PWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-----PPAVKRPD 169 W++R + A A LTFV+P P K P +RPD Sbjct: 21 AWKKRPVVVKYHAFCDEMKANRFTLPESGAHLTFVIPMPKSWSKKKRIEMNGKPHQQRPD 80 Query: 170 LDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 +D L +AV+D + + +D +V ++ A K+ E + Sbjct: 81 VDNLIKAVMDAI----FDEDCRVWNISASKLWGEQGK 113 >UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MNI2_ANATD Length = 124 Score = 81.0 bits (198), Expect = 3e-14, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 37/147 (25%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ + KP P+ G + + E I + + Sbjct: 4 FKIEIQTKPVPKARPR---------------LGANGRMYTPKETREFEELIGWTTRSVVR 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 + PV+ ++ R D D +A+A+LDGL+ V ++DD Sbjct: 49 ------KPIEKPVKVNIDVYSK--------------TRADFDNIAKAILDGLSGVAFIDD 88 Query: 190 SQVDDLHARKVLAELSQQPGCHMRIAS 216 QV DL RK+ + I Sbjct: 89 RQVVDLRIRKL--TPVNCEKIVISIRE 113 >UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QRE3_NITHX Length = 112 Score = 79.8 bits (195), Expect = 7e-14, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 22/125 (17%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P RG L + A+++ A + PV L Sbjct: 10 PVSVNQLYRGRRFLTTDGKRT---KLLNAVSARKQYRGA-----PLEGPVCVELQVYFKS 61 Query: 153 PSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHM 212 + D+D + +A LD LT ++W DD Q+ +LHA K+ + +P + Sbjct: 62 KAS------------SDIDNVCKAALDSLTGILWKDDRQIQELHAYKL--QDKLRPRIEL 107 Query: 213 RIASP 217 ++ Sbjct: 108 TLSQL 112 >UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A3T9_9BACT Length = 151 Score = 79.4 bits (194), Expect = 9e-14, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 9/99 (9%) Query: 124 SADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP----PAVKRPDLDKLARAVLD 179 + +L P VR LTF P + K + P +PD D A+ D Sbjct: 47 AYCTLLVTHRPPQPLAGFVRCHLTFTWPWLAKHTKKHRAFGWYPHGGKPDWDNAAKLFCD 106 Query: 180 GLTDVVW--LDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 L V + DD+Q+ D K + PG +R++ Sbjct: 107 CLKTVGFFQRDDAQIFDGRLIKGHGDR---PGIRVRLSE 142 >UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobacteria RepID=B2U8I2_RALPJ Length = 158 Score = 78.3 bits (191), Expect = 2e-13, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 14/144 (9%) Query: 94 EGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRP 153 P + + + ++E++A + A + V+ T RP Sbjct: 21 RIVKPKSGPSFVSTYVTPEAKAYKEQVAWLAKSAGVRE-----PLACRVQIDYTLYPKRP 75 Query: 154 SGTPKSYTPPA------VKRPDLDKLARAVLDGLTDVVWLDDS-QVDDLHARKVLAELSQ 206 + V+ DLD + +LD L VV DD QV +HA + + + Sbjct: 76 QDWERRVAKDPLQWDNTVQCIDLDNAQKVLLDALKGVVIQDDGWQVRRIHAERGVPD--G 133 Query: 207 QPGCHMRIASPGWGDEAIAAWQAA 230 + + + + + A Sbjct: 134 EARIVVTVTTLLEESPQATLFSEA 157 >UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6T7_9BACT Length = 141 Score = 78.3 bits (191), Expect = 2e-13, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 34/166 (20%) Query: 55 ALSARVTYERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVG 114 +L + ++ + + +PG P P + ++ +A Sbjct: 8 SLRKKEVWKIENNKIFEIEIPGLP--------------PTVNHFYRTSRTGVRYKTAEGK 53 Query: 115 PWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLA 174 W+ + L M +A V + T K D+D Sbjct: 54 AWQAGVVLL----MRTANKNYQAYAGEVGLYIDL-----MSTDKRRW-------DVDNRI 97 Query: 175 RAVLDGL-TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 +A+ D L + V +D+QV +LHAR+V + + ++ I Sbjct: 98 KALQDCLASAGVIKNDTQVIELHARRVHGDDEKT---NVMIYKLAE 140 >UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=53 Tax=root RepID=RUSA_SHISS Length = 120 Score = 77.9 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 45/136 (33%), Gaps = 20/136 (14%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 + P + R SA +R+ + +AML G PV+ Sbjct: 4 YSITLPWPPSNNRYYRHNRGRTHISAEGQAYRDNVTRIIKNAMLDIG-----LAMPVKIR 58 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDSQVDDLHARKVLAEL 204 + MP +R DLD L +A D LT WLDD+QV D K+ Sbjct: 59 IECHMP------------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTK 106 Query: 205 SQQPGCHMRIASPGWG 220 + I G Sbjct: 107 GG--RLELTITEMGNE 120 >UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A4110 Length = 107 Score = 74.4 bits (181), Expect = 3e-12, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 13/117 (11%) Query: 102 GPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT 161 AA +++ IA A + L FV +P K T Sbjct: 2 TKFGSTYMPAAYKVYQKAIAAAL-------PKLDSQYTGELEVILEFV-CKPIAKSKFTT 53 Query: 162 PPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 P D+D A+ V+D LTD W DD Q+ L RK L + P + I Sbjct: 54 PMG----DVDNFAKGVMDTLTDEGWWEDDRQIMQLAVRKRFPALGEDPHIRIYIREL 106 >UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacterium longum subsp. infantis RepID=B7GQZ5_BIFLI Length = 142 Score = 74.0 bits (180), Expect = 4e-12, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 47/144 (32%), Gaps = 35/144 (24%) Query: 80 PQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPV-LDK 138 P+G + A+ P R A A P Sbjct: 2 PKGRPRV---------------------YNGHAMTPKRTVRAEERLFAEFRLKYPQAKPY 40 Query: 139 KYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHAR 198 + PVR F M RPDLD L + VLD L V ++DD+QV + HA Sbjct: 41 QCPVRLEAEFWMS------------HRGRPDLDNLLKLVLDSLNGVAYVDDAQVVESHAC 88 Query: 199 KVLAELSQQPGCHMRIASPGWGDE 222 K + ++ G R GD Sbjct: 89 KRMPDMWVY-GAKGRYRRRKSGDP 111 >UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 RepID=C3WYQ9_9FUSO Length = 117 Score = 71.7 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 20/133 (15%) Query: 85 DFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRA 144 F K + + S A +R+ + + V+ Sbjct: 4 RFEIPYKPDSMNTHWRIAKNGGQYLSKAGREFRDNVQNYIKLY------KYKTYEKSVKV 57 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAEL 204 L DLD + +LD +++DD Q+D + A K + Sbjct: 58 KLDLYFADKRTR------------DLDNYFKGILDSFKGFLYVDDKQIDKIEATKHIGAG 105 Query: 205 SQQPGCHMRIASP 217 + + Sbjct: 106 KNY--FIIEVEEL 116 >UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadaceae RepID=Q0AN00_MARMM Length = 112 Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 18/112 (16%) Query: 106 LKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV 165 + + ++ I + + PA Sbjct: 10 VDAVTTQTRRFKSLIGEFFRLEFKRTQPKWGPYEVCIEV---------------ARDPAS 54 Query: 166 KRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 D+D +A+AVLD LT VV+ DDSQV+ L +V + P + Sbjct: 55 PDHDVDGVAKAVLDALTGVVFHDDSQVERLLVTRVEGDR---PRIAVTARPM 103 >UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease n=3 Tax=Arsenophonus nasoniae RepID=D2U1C7_9ENTR Length = 129 Score = 71.0 bits (172), Expect = 3e-11, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 16/126 (12%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P R + S ++ A + +G + V + +P Sbjct: 12 PPSVNTYWRHNSKHTYLSNKAKAFKATTAKIVNEMRQKSG--CQKFEGEVSVLMQLYLP- 68 Query: 153 PSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPG-C 210 + D+D ++ VLD LT VW DDSQV + K+ + G C Sbjct: 69 -----------NKIKRDVDNYSKGVLDSLTGADVWNDDSQVRVMTIEKIDNNGGVKGGKC 117 Query: 211 HMRIAS 216 + I Sbjct: 118 VVAINE 123 >UniRef50_B5VV93 Endodeoxyribonuclease RusA n=2 Tax=Arthrospira RepID=B5VV93_SPIMA Length = 278 Score = 70.6 bits (171), Expect = 4e-11, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 33/156 (21%), Gaps = 31/156 (19%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + + G P+ WR R + Sbjct: 151 TELISFVIEGAVVPKARPRVTSNG----------------TYLPPRYREWRNRAEVELYR 194 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT---D 183 + L ++ D+D LA A LD LT Sbjct: 195 QISERNLTNKFPLRRAAVTIRLF------------GNHRTNSDIDNLAGACLDALTLQGA 242 Query: 184 VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 V +DD R + G + I + Sbjct: 243 GVLMDDRLSCLPKLRVEFFPDIPKTGVWIDIEPLSY 278 >UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacteraceae RepID=B0T4W4_CAUSK Length = 132 Score = 70.2 bits (170), Expect = 6e-11, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 18/131 (13%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASL 146 G ++ + ++ I + ++ V + Sbjct: 9 WTHHGKVRAREDGGELTLVVDGLTTQAKYYKPLIYEFFRKVWRGSRPAW--GEFSVEIGM 66 Query: 147 TFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 FV P DLD LA+A+LD + + DD+QV L + AE Sbjct: 67 EFVGDPPW-------------MDLDNLAKALLDAIKGYAFHDDAQVARLLVERRPAERE- 112 Query: 207 QPGCHMRIASP 217 + + Sbjct: 113 --RIIIVVRKL 121 >UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MV65_9FUSO Length = 109 Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 19/127 (14%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P + S + E ++ + Sbjct: 2 PPSVNTLWVNKHRGRYKSKRGKEFEEIAKYELKKQYKGEVTKKR-----LKVEIWLYFK- 55 Query: 153 PSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHM 212 + D+D +A+LD L +V DD +DDL K+ + ++ Sbjct: 56 -----------TRAKRDIDNYNKAILDSLKGIVIEDDELIDDLAVHKIKG--HGKDKVYI 102 Query: 213 RIASPGW 219 I G Sbjct: 103 EILERGN 109 >UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA superfamily n=1 Tax=Bacillus cereus H3081.97 RepID=B5V5C5_BACCE Length = 135 Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 40/132 (30%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 V G P ++ ++ + W+ R+ A+ Sbjct: 3 PFEFIVEGPPV------------------------SLQTKNRNRLQEWKARVRSAAELYW 38 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLD 188 + ++ S+T+ PD+D + + + D L +V+ D Sbjct: 39 PTEDS---PSDKQLKLSITYYYE-------------NTSPDVDNIIKPIQDALVGLVYND 82 Query: 189 DSQVDDLHARKV 200 D Q+ D K Sbjct: 83 DDQIIDTSCGKR 94 >UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBQ4_9ENTR Length = 124 Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 41/128 (32%), Gaps = 18/128 (14%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P R S +R ASA A + LP S+T M Sbjct: 12 PPSVNTYWRNLKGKTLISEKGRRYR-----ASAIAAIYQQLPRRSDAITGIVSVTVKMFP 66 Query: 153 PSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCH 211 P+ + D+D +A D LT +W DD QV HA ++ + Sbjct: 67 PTSHRR----------DIDNYLKAPFDALTHANIWKDDDQVK--HADIAWCDVVKGGRFE 114 Query: 212 MRIASPGW 219 + I G Sbjct: 115 ITIRPIGN 122 >UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=Neisseria gonorrhoeae RepID=D1DX10_NEIGO Length = 178 Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 40/143 (27%), Gaps = 12/143 (8%) Query: 75 PGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLP 134 P +G + P + R SA +RE + + A Sbjct: 48 PVDATGRGMRVTRLILPYPVSANRYWRIWRNRAVRSAEAAAYRETVRRIAQGA------G 101 Query: 135 VLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDD 194 + + V + P V DLD + LD L V + +D QV Sbjct: 102 AMPSEGAVAVYVRL---IPKANKDGGANKTVI--DLDNALKVTLDALQGVAYHNDRQVRR 156 Query: 195 LHARKVLAELSQQPGCHMRIASP 217 + A E G + + Sbjct: 157 IAAD-YADEPVAGGGLAVEVGEL 178 >UniRef50_Q119T1 Endodeoxyribonuclease RusA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q119T1_TRIEI Length = 270 Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 39/151 (25%), Gaps = 31/151 (20%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + +++PGK P+ + WR + + + Sbjct: 147 INLYIPGKIVPKARPRVTANG----------------TYLPSRYRIWRNQAEVEIYRQVS 190 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT---DVVW 186 L V S++F DLD LA A LD LT V Sbjct: 191 KLNLEVSLPIQRAAISISFC------------GKHRTNSDLDNLAGACLDALTLNGAGVL 238 Query: 187 LDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 DD ++ G + I Sbjct: 239 QDDRLSCIPKLNIEYIPHIKKIGVWIEIKIL 269 >UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribonuclease n=5 Tax=Enterobacteriaceae RepID=C4X6W2_KLEPN Length = 132 Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 29/147 (19%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +P P + +G ++ E+ ++ + A + + Sbjct: 1 MKFILPFPP--------SVNSYWRSPNKGTAKGKLLVSEAGRK---FKHAVRAAIIEQLK 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLD 188 + P + PP +R DLD +A+ D LT +W D Sbjct: 50 A---VPKPSASPAEVVIVLH------------PPDYRRRDLDNYNKALFDALTYAGIWED 94 Query: 189 DSQVDDLHARKVLAELSQQPGCHMRIA 215 DSQV + ++ + I Sbjct: 95 DSQVKRMTIE--WGGNAKGGRVEITIT 119 >UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XIH3_SYNP2 Length = 135 Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 40/132 (30%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 +L V G P Q ++ + W+ + + Sbjct: 4 RLEFIVDGPPVSQQTRR------------------------RERLRDWKRVVRQEAEKYW 39 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLD 188 S + +T+ D+D + + + D + +V++D Sbjct: 40 SSGQK---ATTGLIMLQITYFY-------------DSVAIDVDNIVKPIQDAIIGLVYID 83 Query: 189 DSQVDDLHARKV 200 D QV D+ RK Sbjct: 84 DDQVTDVLVRKR 95 >UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillus minor NM305 RepID=C5S0Z1_9PAST Length = 114 Score = 63.6 bits (153), Expect = 6e-09, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 23/128 (17%) Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 P + +A +++ + + + P V + Sbjct: 7 PYPPTVNHYWKHTRNGKHYITAKGKTFQQEVRWLTRN------RPKFI--GKVLLEVDIY 58 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVVWLDDSQVDDLHARKVLAELSQQP 208 PP ++ D+D + +A+LD L V +DDS V L A K+ + + Sbjct: 59 ------------PPDNRKRDIDNIFKALLDALTNAGVIIDDSFVYKLVAEKLPSIKGGK- 105 Query: 209 GCHMRIAS 216 +RI Sbjct: 106 -VIVRIKE 112 >UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7I2_9BACT Length = 132 Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 20/129 (15%) Query: 88 GFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLT 147 + P + R S +R+ + D + + + Sbjct: 5 LYLPWPPSNNTYYRHVGHRTLLSRKAHAYRKAVLGMLKD------RVLPEFTGEIELYAE 58 Query: 148 FVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAELSQ 206 F PP ++ DLD L + + D L ++ DDSQ+ L K Sbjct: 59 FY------------PPDKRKRDLDNLLKGLQDTLQHAGLFRDDSQIVHLDIVKKEPHRPD 106 Query: 207 QPGCHMRIA 215 ++RI Sbjct: 107 G-RAYVRIK 114 >UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ91_9FIRM Length = 121 Score = 62.1 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 165 VKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 +PD+D + + D L + +LD+ Q+ K + + Sbjct: 57 NNKPDIDNIMKITADALNGLAYLDNKQIISCTVGKYYSNVQG 98 >UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSA8_SODGM Length = 124 Score = 59.8 bits (143), Expect = 8e-08, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 24/122 (19%) Query: 78 PAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLD 137 P P G+ +AP G ++ E A A A+ + Sbjct: 6 PFP---PSVNGYWRAPNRGKLA--GRHLVSERGRRYR------AEAVAEILEQLRGMPQP 54 Query: 138 KKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDG-LTDVVWLDDSQVDDLH 196 K + S+ F PP+ + DLD +A+ D + +W+DDSQ+ L Sbjct: 55 VKGDLAVSVMFC------------PPSRAKRDLDNYFKALFDSVINAGIWIDDSQIKKLE 102 Query: 197 AR 198 A Sbjct: 103 AE 104 >UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NV05_SODGM Length = 119 Score = 57.5 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 20/134 (14%) Query: 83 SKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPV 142 + + P +R + A + + + Sbjct: 1 MRRYHITLPFPPSVNHYWYHAKGRHFIKEKGIQYRRSV-----MAEIMRLRLAVRFSGQI 55 Query: 143 RASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVL 201 R + PP ++ DLD L +A LD L V+ DD+Q+ DLH + Sbjct: 56 RVRVVA------------NPPDRRKRDLDNLLKAPLDALQHAGVYEDDNQIIDLHIIR-- 101 Query: 202 AELSQQPGCHMRIA 215 E Q + + Sbjct: 102 GEKVQGGKLDITLT 115 >UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EUW4_DICNV Length = 125 Score = 55.9 bits (133), Expect = 9e-07, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 14/134 (10%) Query: 84 KDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVR 143 F P R S +R + L + + + DK+ + Sbjct: 4 HTFKALLPMPPSVNHYYRRRGSHVYLSDEARIFRRDVVLKTIGKIPNKKR-WFDKEQRLA 62 Query: 144 ASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLA 202 ++T D+D +A+LD L ++ V+ +D+Q+DDL + Sbjct: 63 MTVTLYPTNRRSF------------DIDNRLKALLDVLQEIGVYHNDNQIDDLRVVRGAV 110 Query: 203 ELSQQPGCHMRIAS 216 + C + + Sbjct: 111 VKRELGFCVVEVKP 124 >UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria RepID=Q0BY13_HYPNA Length = 118 Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 31/113 (27%), Gaps = 18/113 (15%) Query: 105 ILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA 164 + ++ + D + P Sbjct: 22 TCTGLTTQTKYYKTLLKEFFRKDFPRLRPGYGDYSVHIVMEHLGDAPW------------ 69 Query: 165 VKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 DLD LA+A+LD L V+ DD QV L + AE G M + Sbjct: 70 ---MDLDNLAKALLDSLCGNVFEDDHQVARLLVERRAAERD---GIWMLAEAM 116 >UniRef50_B3SZS6 Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_48F7 RepID=B3SZS6_9ZZZZ Length = 119 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 13/71 (18%) Query: 158 KSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 K P +PDLD + + +D L DD+ V + A K +E QPG + + Sbjct: 57 KHVGKPCQSKPDLDNVLKGFMDALR----TDDASVYAVSASKFWSE---QPGVVLSVRV- 108 Query: 218 GWGDEAIAAWQ 228 AW+ Sbjct: 109 -----PAPAWR 114 >UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLE3_MOOTA Length = 98 Score = 53.2 bits (126), Expect = 7e-06, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 169 DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 DLD +++ D L + WLDD QV + KV+ + + +A Sbjct: 47 DLDNYIKSLADSLNGIAWLDDRQVARMEVEKVVVVEGDE-RAEVEVAP 93 >UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=129 Tax=Enterobacteriaceae RepID=B2U015_SHIB3 Length = 126 Score = 53.2 bits (126), Expect = 8e-06, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 20/134 (14%) Query: 85 DFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRA 144 P R S A +R +AL L L + Sbjct: 4 RIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRL-----KLSLSGRLAI 58 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAE 203 + PP +R DLD + +A LD LT + +DD Q D+++ + A+ Sbjct: 59 KIIA------------EPPDKRRRDLDNILKAPLDALTHAGLLMDDEQFDEINIVR--AQ 104 Query: 204 LSQQPGCHMRIASP 217 ++I Sbjct: 105 PVSGGRLGVKIYPI 118 >UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A959_THEAQ Length = 118 Score = 52.9 bits (125), Expect = 9e-06, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 34/123 (27%), Gaps = 20/123 (16%) Query: 91 KAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVM 150 P + S W +A + V + Sbjct: 9 PWPPSINHYWGARGRGRYLSPQARRW-------HKEAWAVLKAQGVRYSGEVAVYVFAH- 60 Query: 151 PRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAELSQQPG 209 PP ++ DLD + +A+LD L V DD QV L+ + E + Sbjct: 61 -----------PPDRRKRDLDNITKALLDALVGAGVLKDDHQVAVLYVERRPFERPGKVR 109 Query: 210 CHM 212 + Sbjct: 110 LVV 112 >UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribonuclease n=34 Tax=root RepID=B4TRD0_SALSV Length = 129 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 38/130 (29%), Gaps = 23/130 (17%) Query: 93 PEGSPPGTRGPA-----ILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLT 147 P R P SAA ++ A + + P + Sbjct: 8 PPSVNTYWRHPNKGAFAGKSLISAAGRKFQSTACAAIVEQLR---RLPKPTSAPASVEIV 64 Query: 148 FVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAELSQ 206 PP + DLD +A+ D LT VW DDSQV + + Sbjct: 65 LF------------PPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVE--WGPVIP 110 Query: 207 QPGCHMRIAS 216 + + I+ Sbjct: 111 EGKVEITISK 120 >UniRef50_Q9AKY6 Putative uncharacterized protein n=1 Tax=Legionella pneumophila RepID=Q9AKY6_LEGPN Length = 120 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 31/130 (23%), Gaps = 21/130 (16%) Query: 85 DFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRA 144 F P + S +R + Sbjct: 5 RFQLP--YPPTINHYYKRTPKGLALSTKGIQYRHDAFYLLHKHRNHCK------DKRLAV 56 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAE 203 ++ P K D+D + + +LD + V+ DD+Q+D L + Sbjct: 57 TINLFPP-----DKRRR-------DIDNILKCLLDSMQHAGVYDDDNQIDMLTIIRRHVV 104 Query: 204 LSQQPGCHMR 213 + Sbjct: 105 KDGSVAVWIS 114 >UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bacteroides vulgatus ATCC 8482 RepID=A6L486_BACV8 Length = 124 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 34/138 (24%), Gaps = 19/138 (13%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVG---PWRERIALASADAMLSAGLPVLDKKYPVR 143 + + + + +E + + + + R Sbjct: 2 YIIRGQIPSKSNCYKIVSHFDPKTRKTHSSLAKQEVLKEYEKNFYIQCPERGRMIEGYFR 61 Query: 144 ASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDSQVDDLHARKVLA 202 KRPDLD + +LD L +D Q + K + Sbjct: 62 LRAKVYY-------------NSKRPDLDNSLKILLDCLQMTGTIKNDRQCVYIEIEKFVD 108 Query: 203 ELSQQPGCHMRIASPGWG 220 ++P I +G Sbjct: 109 --RKEPRVEYEITPVEFG 124 >UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=19 Tax=root RepID=RUSA_BPHK7 Length = 120 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 34/130 (26%), Gaps = 20/130 (15%) Query: 91 KAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVM 150 P R S +R+ + LD R + + Sbjct: 9 PYPPSLNTYWRRRGSQYYISDKGQKYRKDVQQIIRQ-------LKLDIFTKSRLRIKVIA 61 Query: 151 PRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVW-LDDSQVDDLHARKVLAELSQQPG 209 P + DLD + + +LD L + DD Q DD+ + Sbjct: 62 DVPDSRRR----------DLDNILKGLLDSLIHAGFAEDDEQFDDIRVIR--GVKVPGGR 109 Query: 210 CHMRIASPGW 219 ++I Sbjct: 110 LGIKITELES 119 >UniRef50_O67766 Crossover junction endodeoxyribonuclease rusA n=2 Tax=Aquificaceae RepID=RUSA_AQUAE Length = 126 Score = 51.3 bits (121), Expect = 3e-05, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 46/151 (30%), Gaps = 34/151 (22%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++ +++ P P+ R V W R + Sbjct: 5 MEEIELYLSKLPVPKS--------------NRYIRPKGGKVFKPPRVTNWEARAIWELRE 50 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVV 185 Y + +T ++P ++ D+D + +++ D + V Sbjct: 51 QFKGDA-----IDYEISVDITLILP------------NRRKRDIDNMLKSLWDVMEKAGV 93 Query: 186 WLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 +D+ + ++H K + + G ++I Sbjct: 94 IKNDNLIFEVHTVKKI--EKGKEGVIIKIRP 122 >UniRef50_C5VNX0 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VNX0_CLOBO Length = 209 Score = 49.8 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 34/150 (22%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGP----WRERIALASAD 126 ++ V G P + T+G AIL +S + E IA + Sbjct: 7 KVIVHGSPITKS-----------NFKLSNTKGRAILPYNSGKYHDRYGVYEELIAYEARL 55 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVV 185 P + + A L PD + +++ DG+ + Sbjct: 56 Q-----NPNIFFTESLIAILKVYYKSQKRH-----------PDTTNIPKSIFDGIEKSGL 99 Query: 186 WLDDSQVDDLHARKVLAELSQQPGCHMRIA 215 ++D+Q+ L + + P + + Sbjct: 100 IINDAQIRHLIIEEHYDS--KNPRFELELY 127 >UniRef50_A3MZM1 Predicted Endodeoxyribonuclease RusA n=5 Tax=Pasteurellaceae RepID=A3MZM1_ACTP2 Length = 122 Score = 49.8 bits (117), Expect = 8e-05, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 22/130 (16%) Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 P + A S +R ++ V+ + Sbjct: 10 PYPPSVNHYWRHTKAGTHYISREGKAFRAKVLNICKQ--------FDPFNGAVKIQIYVY 61 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT--DVVWLDDSQVDDLHARKVLAELSQQ 207 P D D L +A+ D LT ++ D++++ + + E+ + Sbjct: 62 YPDNRSR------------DPDNLQKALFDALTASGLIKDDNNKIIKDYRVVGMDEIRKG 109 Query: 208 PGCHMRIASP 217 ++I Sbjct: 110 GMVVIKIKGL 119 >UniRef50_O52945 Plasmid PLS32 DNA for thymidine kinase, replication protein, complete cds n=3 Tax=Bacillus subtilis RepID=O52945_BACSU Length = 185 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 41/151 (27%), Gaps = 24/151 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + LR+ P P R + S ++ D Sbjct: 1 MKSLRLVSPLPP--------SVNNYLSYKVSSNGRRKFVQAYPSEETKIYKSFFTDYVKD 52 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVV 185 M +K V + F + R KR D + + D T V Sbjct: 53 QMNEQEWEQPEKGKLVFVKIKFFLDR-------------KRKDPNNFLKVPFDVFTEAGV 99 Query: 186 WLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 +LDD V A +V + SQ P I Sbjct: 100 YLDDD-VALPVAERVYID-SQNPRLEFEIYE 128 >UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomonas palustris RepID=Q07I62_RHOP5 Length = 138 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 15/87 (17%) Query: 116 WRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLAR 175 W+ +I AS + + + + A+L F P D+D + + Sbjct: 29 WKSKIVDASREVIPEGH---FATEARIAATL-FYFP-----------ATEMAGDIDNIVK 73 Query: 176 AVLDGLTDVVWLDDSQVDDLHARKVLA 202 +LD L ++ DD QV L +K Sbjct: 74 PILDALGRHIYRDDKQVYRLVVQKFEP 100 >UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ34_9DEIN Length = 120 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 31/132 (23%), Gaps = 22/132 (16%) Query: 83 SKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPV 142 + P V WR+ +A S + PV Sbjct: 5 RPACLCLPWPPASGNHQYGRRTRGVYLRREVTAWRDEVAWLSRGH---------KAEVPV 55 Query: 143 RASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVVWLDDSQVDDLHARKVL 201 + PP +R D D + + +LD L V DD R Sbjct: 56 ELRIRLY------------PPDNRRRDADNVLKLLLDALVRAGVIPDDCNRVVRAYRMEW 103 Query: 202 AELSQQPGCHMR 213 + + Sbjct: 104 GQARPGGAIEVE 115 >UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693C21 Length = 124 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 36/127 (28%), Gaps = 25/127 (19%) Query: 95 GSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPS 154 +G ++ S W E + ++D G V L F P Sbjct: 16 MYRNAYKGKRAVRVLSQEAREWYEETVILASDWRKKNG--WQTAGGKVIVRLWFYFP--- 70 Query: 155 GTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDS-----QVDDLHARKVLAELSQQPG 209 +R D + +LD L D + DD QV D ++P Sbjct: 71 ---------DRRRRDTHNGLKILLDALEDARFYDDDKHALPQVMD------YGIDRERPR 115 Query: 210 CHMRIAS 216 + + Sbjct: 116 VEIELER 122 >UniRef50_C8Q091 Holliday junction resolvase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q091_9GAMM Length = 126 Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 18/130 (13%) Query: 90 KKAPEGSPPG-TRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 P + S ++ + + A + P + L Sbjct: 12 MPVPPSVNGYLKHDKRGIARLSDEAREYK----MDAYQA-IGRYAPSEPSTKRLALELII 66 Query: 149 VMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDSQVDDLHARKVLAELSQQ 207 + + DLD + +LD L + +D Q+D++ ++ E+ Sbjct: 67 HF---------GSKAIDAKRDLDNCQKLILDALEYARFFNNDQQLDEIVCKR--GEVING 115 Query: 208 PGCHMRIASP 217 + + Sbjct: 116 GLIEVTLCEI 125 >UniRef50_A6TU92 Endodeoxyribonuclease RusA n=10 Tax=Clostridiaceae RepID=A6TU92_ALKMQ Length = 141 Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 16/147 (10%), Positives = 36/147 (24%), Gaps = 29/147 (19%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 L+ +PG+P + + G + IA Sbjct: 2 LKFTIPGRPVSKSNFKLTHKNGQVWMPKSGKHS---------RYVAYENMIAGYINQQYA 52 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVVWLD 188 + L P + DL +++ DG+ + + Sbjct: 53 GPQ-----LTQQLITILRLYFP------------DRRMGDLHNYPKSICDGIEKSGIISN 95 Query: 189 DSQVDDLHARKVLAELSQQPGCHMRIA 215 D Q+ + + + P + + Sbjct: 96 DKQLRPVLLFDFIDS--ENPRVEIELY 120 >UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B184_HERA2 Length = 138 Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 25/140 (17%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERI----ALASADAMLSAGLPVLDKKYPVRASLTF 148 P + S ++ ++ AL +S L + + L F Sbjct: 10 PPSINSQYVTVGNRRVLSREAQAFKRQVKRQLALLQQRDTISEQFLALAHQGYIALFLDF 69 Query: 149 VMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQP 208 P R DLD + D + + ++D++V D+H K + P Sbjct: 70 YFETP------------LRRDLDGGLKITQDSICTSLGINDNRVVDIHLVKRID--PLHP 115 Query: 209 GCHMRIASPGWGDEAIAAWQ 228 + + A++ WQ Sbjct: 116 RLEVELE-------ALSDWQ 128 >UniRef50_B8HN12 Endodeoxyribonuclease RusA n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HN12_CYAP4 Length = 130 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 38/156 (24%) Query: 63 ERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIAL 122 R +++ + + G P+ G + W+E Sbjct: 12 IRKSNQEITLHLTGPVTPKARPRHHGNQ----------------SYLPGRYRQWKEDAIA 55 Query: 123 ASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL- 181 + +P + R DLD ++ AVLD L Sbjct: 56 ELSQQYEGEPIPQAIVTIEI--------------------LGSARGDLDNISGAVLDALV 95 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 V +DD + G ++I+ Sbjct: 96 QAGVLVDDRISCIPRLEICHV-PGKIQGAKIQISQL 130 >UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSR8_9PROT Length = 91 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 14/104 (13%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASL 146 + G ++ + ++ ++ M V P A + Sbjct: 2 SSGRGRVRIKVQGQDALILIDGVTTQTRALKKIVS----AHMRRQVAFVRPAFGPFEARI 57 Query: 147 TFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDS 190 + D+D +A+AVLD L+ +W DD Sbjct: 58 W------TSVLAETRGHH----DVDNIAKAVLDSLSGHIWRDDR 91 >UniRef50_Q2NPB1 Putative HNH family gene n=1 Tax=Xanthomonas phage OP2 RepID=Q2NPB1_9CAUD Length = 134 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 17/132 (12%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASL 146 P R SAA ++ +A +L G + + Sbjct: 13 RLTLPWPPTLNSIWRAVQGRIVLSAAARDYKRAVA-----KLLPVGKAAAPLTGRLMVWV 67 Query: 147 TFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELS 205 T PS K D+ + ++D LTD +WLDDSQ+D L + A+ Sbjct: 68 TLY--PPSTMGKRKW-------DIANREKIMIDCLTDQRIWLDDSQIDALVLLRGGADGI 118 Query: 206 QQPGCHMRIASP 217 I + Sbjct: 119 G--RAEFTIQTI 128 >UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia RepID=B2JL34_BURP8 Length = 164 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 47/176 (26%), Gaps = 44/176 (25%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G+PA + + + GT + S + DA+ Sbjct: 2 RVAFTLRGEPASKANSR-EIVARKVRSKTDGTLKTRPMSIKSDKARNFE-------RDAL 53 Query: 129 LSAGLPVLD-KKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD---- 183 PVR L A +RPDLD +LD + D Sbjct: 54 KQIPPSARVRMTGPVRVILKIFY-------------ATERPDLD--ESVILDVMQDRFRT 98 Query: 184 --------------VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIA 225 V+ +D QV P + I S A+A Sbjct: 99 VTVKGIERRELVYHGVYRNDRQVRQKFV--FHGIDRVNPRAEVVIESLQEQQLALA 152 >UniRef50_B0QX07 Predicted Endodeoxyribonuclease RusA n=1 Tax=Haemophilus parasuis 29755 RepID=B0QX07_HAEPR Length = 134 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 36/145 (24%) Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 P + S +RE + A + L V + Sbjct: 10 PFPPSVNHYWRHTRQGKHYISDKGKRFRE----LALLACFAE----LPFDGLVAVDVRVY 61 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDS--QVDDLHAR-------- 198 +P + DLD L + ++D LT + DDS V Sbjct: 62 LP------------DRRDRDLDNLWKVIMDSLTHAKILKDDSWKYVVKESIEAVGEVRVN 109 Query: 199 -----KVLAELSQQPGCHMRIASPG 218 + + E+ + ++I Sbjct: 110 DKGEPEFIPEIVKDGRVVVKIKELK 134 >UniRef50_B0V859 Putative Holiday-junction resolvase n=1 Tax=Acinetobacter baumannii AYE RepID=B0V859_ACIBY Length = 168 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 24/127 (18%) Query: 92 APEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMP 151 AP + S + + P ++ +TF P Sbjct: 65 APPSVNHYWVASGKRRFLSNKARDFHALVRQVV---------PAHKSTARLKLEVTFHFP 115 Query: 152 RPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVVWLDDSQVDDLHARKVLAELSQQPGC 210 + D+D +A +D L + +DD Q D+L ++ + + Sbjct: 116 ------------TRQCRDIDNYLKATIDSLVKCGLCVDDEQFDELLVKR--GNVIKGGLI 161 Query: 211 HMRIASP 217 ++++ Sbjct: 162 KLKVSEV 168 >UniRef50_C0QUS6 Crossover junction endodeoxyribonuclease RusA (Hollidayjunction nuclease rusA) (Holliday junction resolvase) n=1 Tax=Persephonella marina EX-H1 RepID=C0QUS6_PERMH Length = 148 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 15/89 (16%) Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWL 187 L K PV + F++P +R DLD + + + D L + Sbjct: 48 LQKQSSGEPLKDPVEIKIDFILP------------DRRRRDLDNIMKTLGDCLVYAGIIE 95 Query: 188 DDSQVDDLHARKVLAELSQQPGCHMRIAS 216 DD+ + K + + + G +R+ Sbjct: 96 DDNLIFKQTLEKHI--IKGKEGVIIRLKK 122 >UniRef50_Q8PFN4 Putative uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. citri RepID=Q8PFN4_XANAC Length = 305 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 10/82 (12%) Query: 139 KYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD--VVWLDDSQVDDLH 196 V L + + + K D+D + + ++D LT + +DDSQ+ +H Sbjct: 65 AGQVNLELLWYL------HATQRQETDKIGDIDNITKPIIDALTGEKGLLIDDSQIGSMH 118 Query: 197 ARKVLAELSQQPGCHMRIASPG 218 + + Q + I Sbjct: 119 S--FWNSRNHQTEKDVLILRIK 138 >UniRef50_B4U8U8 Endodeoxyribonuclease RusA n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U8U8_HYDS0 Length = 150 Score = 44.0 bits (102), Expect = 0.005, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 36/122 (29%), Gaps = 16/122 (13%) Query: 96 SPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG 155 + R + W + + + + V +P Sbjct: 18 ANRYIRQKGGAVFKPWKISSWETKASWEISLQLK-KLKFKEPFSCKVSVEAIIFLP---- 72 Query: 156 TPKSYTPPAVKRPDLDKLARAVLDGL-TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRI 214 K D+D + + + D L + V +D+ + +++ K E Q G ++I Sbjct: 73 -DKRRR-------DIDNMLKTLWDVLEKNDVIKNDNLIYEINTIK-HVEKGLQ-GIFIKI 122 Query: 215 AS 216 Sbjct: 123 KP 124 >UniRef50_C8WWQ1 Endodeoxyribonuclease RusA n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WWQ1_ALIAD Length = 131 Score = 43.6 bits (101), Expect = 0.006, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 21/139 (15%) Query: 76 GKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPV 135 P P P+ ++ ++ +R A + G + Sbjct: 5 ILPLPPSVNHAYRTYVHPQTGQR-------IRVLTSKAQKFRRDAAYLALRWRQETGWTM 57 Query: 136 LDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDL 195 V L + P + +R D + +LD L V++ +D L Sbjct: 58 PQPGTKVVLRLWYFWP------------SRRRMDTHNREKVLLDALEGVLYPEDR--WVL 103 Query: 196 HARKVLAELSQQPGCHMRI 214 ++P + + Sbjct: 104 IQEMDFEVDRKRPRLEIEV 122 >UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN52_9ACTN Length = 72 Score = 42.8 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 4/60 (6%) Query: 159 SYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 P +PD+ + + D L V DD + D H K A + G + Sbjct: 4 RDGEPHTGKPDMSNMLKTFEDCLVRCSVIDDDRGIIDEHLSKGYA---KTYGIFFKAEEI 60 >UniRef50_C9KYW6 Crossover junction endodeoxyribonuclease RusA family protein n=2 Tax=Bacteroides RepID=C9KYW6_9BACE Length = 147 Score = 42.8 bits (99), Expect = 0.010, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 169 DLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAAW 227 DLD + +LD L V +DS ++HA K + P + + Sbjct: 72 DLDNALKTILDCLQMVEAITNDSLCFEIHAEKRIDRR--NPRVEFGMEEINEQKNIFSQN 129 Query: 228 QAAN 231 +A+ Sbjct: 130 KASE 133 >UniRef50_C7RH80 Endodeoxyribonuclease RusA n=1 Tax=Anaerococcus prevotii DSM 20548 RepID=C7RH80_ANAPD Length = 125 Score = 42.5 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 29/152 (19%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ + G PA + K+ M K P P +++ Sbjct: 1 MKLVLYGNPATK--KNSMQIFKNPRTGQPFL----------TQSKRYKDYARDCGRQI-- 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLD 188 G + YP+ + R DL L A D L+D V D Sbjct: 47 -TGKYKKNIDYPINLKCVYYRK------------TKHRVDLTNLLAATCDILSDCGVIKD 93 Query: 189 DS-QVDDLHARKVLAELSQQPGCHMRIASPGW 219 D+ ++ H + + P + I Sbjct: 94 DNCKIVVSHDGSRVKYDKECPRVEIEIEKMNE 125 >UniRef50_C6NYJ0 Endodeoxyribonuclease RusA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYJ0_9GAMM Length = 80 Score = 42.5 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 8/80 (10%) Query: 147 TFVMPRPSGTPKSY------TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKV 200 P K ++ DL +A +D L V + DD Q+ + + Sbjct: 1 MLHPVLPKDAEKRRQIWGDYWHLELRCIDLANAEKAAVDALQGVAFEDDKQIVRMVLER- 59 Query: 201 LAELSQQPGCHMRIASPGWG 220 + + + G Sbjct: 60 -GQPVPEGAVFVEWTPFDGG 78 >UniRef50_D2U459 Phage V crossover junction endodeoxyribonuclease n=1 Tax=Arsenophonus nasoniae RepID=D2U459_9ENTR Length = 105 Score = 42.5 bits (98), Expect = 0.012, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 162 PPAVKRPDLDKLARAVLDGLT-DVVWLDDSQVDDLHAR 198 PP R DLD +A D LT +W DD+QV L Sbjct: 13 PPTDHRRDLDNFVKAKQDSLTYAGIWQDDAQVKRLTVE 50 >UniRef50_C4GFT5 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GFT5_9NEIS Length = 145 Score = 42.1 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 163 PAVKRPDLDKL---ARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRI 214 P ++ DLD L + LDG+ + +DD+Q L KV AE + + + Sbjct: 84 PDARKRDLDNLLAAMKPALDGMAKAIGVDDAQFRPLLIDKVKAESRKDARVEIEL 138 >UniRef50_C4K4W1 Endonuclease RUS n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4W1_HAMD5 Length = 91 Score = 40.9 bits (94), Expect = 0.036, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 16/99 (16%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P A S A ++ A+ A + + G V + Sbjct: 8 PPSVNHYWVRTARRVYLSEAAKRFQRLTAIEVAKSSMKQGHRSFPGDVSVALT------- 60 Query: 153 PSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDS 190 P + D+D + VLD LT +W DD+ Sbjct: 61 --------HLPDKRVRDVDNYPKGVLDALTKAGIWSDDA 91 >UniRef50_A1HR43 Endodeoxyribonuclease RusA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR43_9FIRM Length = 124 Score = 40.2 bits (92), Expect = 0.060, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 32/126 (25%), Gaps = 15/126 (11%) Query: 92 APEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMP 151 P + + + W+E+ + A G K+ + P Sbjct: 11 VPSVNHCYRNVSIHRRVLTPIGKAWQEKAQYIAKAAAAKQGW-RFSKRQKLVMEYWTYWP 69 Query: 152 RPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCH 211 D+ + +LD L +++ +D V A P Sbjct: 70 DYRTR------------DVHNQEKLLLDTLEGILYDNDKWVLPRAMD--FAVDKVNPRIE 115 Query: 212 MRIASP 217 + I Sbjct: 116 ILIYPL 121 >UniRef50_B7KYT0 Endodeoxyribonuclease RusA n=2 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KYT0_METC4 Length = 187 Score = 39.4 bits (90), Expect = 0.091, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 23/156 (14%) Query: 84 KDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVR 143 P + A + + WR++ AL D Sbjct: 33 PSVEIRFPLPPSTNSLYFNVAGGRRKTPRYRAWRQQAALLIDVQRPGRMAGPCD------ 86 Query: 144 ASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLD-GLTDVVWLDDSQVDDLHARKVLA 202 +T +P SG D D + LD + V DD Q A + Sbjct: 87 --VTIYLPPFSG-------------DADNRIKPCLDAAVAAGVLADDGQRYVRRALVEVD 131 Query: 203 ELSQQPGCHMRIASPGWGDEAIAAWQAANG-GAAHV 237 + + + + S D A ++ G AAH+ Sbjct: 132 RAATEVRMVLTMPSVEEQDRAEIEVRSREGQSAAHI 167 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX0... 168 1e-40 UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO 134 3e-30 UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans ... 133 5e-30 UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli... 130 4e-29 UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobi... 129 6e-29 UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncu... 129 1e-28 UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9... 127 2e-28 UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas a... 126 7e-28 UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacte... 126 7e-28 UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN 124 2e-27 UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas p... 124 3e-27 UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q... 123 4e-27 UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 121 2e-26 UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacte... 121 2e-26 UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteoba... 121 3e-26 UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A... 121 3e-26 UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus ... 120 3e-26 UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidami... 119 6e-26 UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostri... 119 8e-26 UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium p... 118 1e-25 UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcu... 118 1e-25 UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia... 118 2e-25 UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus... 118 2e-25 UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus Re... 117 4e-25 UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminoc... 116 5e-25 UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Strepto... 116 8e-25 UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter s... 114 2e-24 UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verruc... 112 8e-24 UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillu... 112 1e-23 UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus ... 112 1e-23 UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia ... 111 2e-23 UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3... 111 3e-23 UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillu... 111 3e-23 UniRef50_C0X7X1 Possible crossover junction endodeoxyribonucleas... 110 4e-23 UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus lichenifo... 107 2e-22 UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJ... 106 5e-22 UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospiri... 106 7e-22 UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas s... 105 1e-21 UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opituta... 104 3e-21 UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea f... 104 3e-21 UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Ta... 103 5e-21 UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4Z... 103 6e-21 UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales R... 103 6e-21 UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Ta... 102 8e-21 UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Ta... 101 3e-20 UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7... 100 4e-20 UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes Re... 100 4e-20 UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q... 100 5e-20 UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscilla... 100 6e-20 UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Ta... 99 8e-20 UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A... 99 8e-20 UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomacu... 99 1e-19 UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepI... 98 2e-19 UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudona... 98 3e-19 UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax... 98 3e-19 UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Rumino... 96 7e-19 UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD 96 1e-18 UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA fa... 96 1e-18 UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collins... 95 2e-18 UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB 95 2e-18 UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=... 93 1e-17 UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornu... 92 1e-17 UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collins... 92 2e-17 UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidob... 92 2e-17 UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobac... 89 8e-17 UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella l... 89 1e-16 UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tric... 88 3e-16 UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=... 87 6e-16 UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetob... 86 7e-16 UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylo... 86 1e-15 UniRef50_B5VV93 Endodeoxyribonuclease RusA n=2 Tax=Arthrospira R... 86 1e-15 UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA fa... 86 1e-15 UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteri... 85 2e-15 UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum ... 85 2e-15 UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthro... 85 2e-15 UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterob... 84 2e-15 UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter f... 84 3e-15 UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease... 84 5e-15 UniRef50_Q119T1 Endodeoxyribonuclease RusA n=1 Tax=Trichodesmium... 83 7e-15 UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter h... 83 9e-15 UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteri... 83 1e-14 UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Str... 82 1e-14 UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glos... 80 5e-14 UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia ... 80 5e-14 UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 ... 80 6e-14 UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichel... 80 8e-14 UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis v... 79 8e-14 UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=... 79 1e-13 UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2... 78 3e-13 UniRef50_C2LH12 Endodeoxyribonuclease RusA n=1 Tax=Proteus mirab... 78 3e-13 UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon... 77 5e-13 UniRef50_A3MZM1 Predicted Endodeoxyribonuclease RusA n=5 Tax=Pas... 76 1e-12 UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacteri... 75 2e-12 UniRef50_A6TU92 Endodeoxyribonuclease RusA n=10 Tax=Clostridiace... 75 2e-12 UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillu... 75 2e-12 UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bactero... 75 2e-12 UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=... 74 3e-12 UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribo... 74 3e-12 UniRef50_O52945 Plasmid PLS32 DNA for thymidine kinase, replicat... 73 7e-12 UniRef50_Q2NPB1 Putative HNH family gene n=1 Tax=Xanthomonas pha... 73 8e-12 UniRef50_Q9AKY6 Putative uncharacterized protein n=1 Tax=Legione... 73 9e-12 UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=N... 73 9e-12 UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquat... 72 1e-11 UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis... 72 2e-11 UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=... 72 2e-11 UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribo... 71 4e-11 UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacterac... 70 5e-11 UniRef50_O67766 Crossover junction endodeoxyribonuclease rusA n=... 70 6e-11 UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia ... 70 7e-11 UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadace... 69 8e-11 UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA su... 69 2e-10 UniRef50_B8HN12 Endodeoxyribonuclease RusA n=1 Tax=Cyanothece sp... 68 3e-10 UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synecho... 67 4e-10 UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus ... 67 5e-10 UniRef50_C8Q091 Holliday junction resolvase n=1 Tax=Enhydrobacte... 67 6e-10 UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=... 66 7e-10 UniRef50_C5VNX0 Endodeoxyribonuclease RusA family protein n=1 Ta... 66 1e-09 UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria ... 63 6e-09 UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermos... 59 1e-07 UniRef50_B3SZS6 Putative uncharacterized protein n=1 Tax=uncultu... 52 1e-05 UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomo... 52 1e-05 UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorell... 52 1e-05 UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvula... 51 3e-05 Sequences not found previously or not previously below threshold: UniRef50_B0QX07 Predicted Endodeoxyribonuclease RusA n=1 Tax=Hae... 62 2e-08 UniRef50_B0V859 Putative Holiday-junction resolvase n=1 Tax=Acin... 60 5e-08 UniRef50_B4U8U8 Endodeoxyribonuclease RusA n=1 Tax=Hydrogenobacu... 56 9e-07 UniRef50_C8WWQ1 Endodeoxyribonuclease RusA n=4 Tax=Alicyclobacil... 55 2e-06 UniRef50_A6LQD4 Endodeoxyribonuclease RusA n=34 Tax=Clostridium ... 54 3e-06 UniRef50_C4K4W1 Endonuclease RUS n=1 Tax=Candidatus Hamiltonella... 54 5e-06 UniRef50_Q6UJ09 Gp23 n=4 Tax=unclassified Myoviridae RepID=Q6UJ0... 53 6e-06 UniRef50_UPI00016C6946 putative endonuclease n=1 Tax=Clostridium... 53 8e-06 UniRef50_A1HR43 Endodeoxyribonuclease RusA n=1 Tax=Thermosinus c... 53 9e-06 UniRef50_C0QUS6 Crossover junction endodeoxyribonuclease RusA (H... 52 1e-05 UniRef50_B7KYT0 Endodeoxyribonuclease RusA n=2 Tax=Methylobacter... 52 1e-05 UniRef50_C9KYW6 Crossover junction endodeoxyribonuclease RusA fa... 50 5e-05 UniRef50_C7RH80 Endodeoxyribonuclease RusA n=1 Tax=Anaerococcus ... 50 5e-05 UniRef50_B5ZX46 Endodeoxyribonuclease RusA n=1 Tax=Rhizobium leg... 49 1e-04 UniRef50_C4GFT5 Putative uncharacterized protein n=1 Tax=Kingell... 48 3e-04 UniRef50_A7JUB5 Possible endodeoxyribonuclease n=2 Tax=Mannheimi... 48 3e-04 UniRef50_B9TAJ4 Putative uncharacterized protein n=1 Tax=Ricinus... 47 3e-04 UniRef50_D2U459 Phage V crossover junction endodeoxyribonuclease... 47 6e-04 UniRef50_A8HP85 Putative uncharacterized protein n=2 Tax=Caudovi... 46 0.001 UniRef50_C6NYJ0 Endodeoxyribonuclease RusA n=1 Tax=Acidithiobaci... 45 0.002 UniRef50_Q8PFN4 Putative uncharacterized protein n=1 Tax=Xanthom... 45 0.003 UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626... 44 0.005 UniRef50_D1GPV9 Phage protein n=2 Tax=Staphylococcus RepID=D1GPV... 43 0.008 UniRef50_B2I3P4 Putative uncharacterized protein n=3 Tax=Acineto... 43 0.009 UniRef50_A7VTC7 Putative uncharacterized protein n=2 Tax=Bacteri... 43 0.010 UniRef50_Q38073 Bacteriophage SPP1 complete nucleotide sequence ... 42 0.011 UniRef50_D1E1T5 Phage associated protein n=4 Tax=Neisseria RepID... 42 0.014 >UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX08_BPMT4 Length = 213 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 133/193 (68%), Positives = 157/193 (81%), Gaps = 9/193 (4%) Query: 30 EHAKAAAAELLLDMVPAESYDVLYAALSARVTYERNGGRQLRMFVPGKPAPQGSKDFMGF 89 + AK AAA+ +L M+PA++++ L AL ARVT +RNG RQLR+FVPG+PAPQGSKDF GF Sbjct: 9 DEAKLAAADAVLAMLPADAHEALREALHARVTGDRNGSRQLRLFVPGRPAPQGSKDFKGF 68 Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 K G AILKESS AVGPWRER+ALA+A A+L+ GLPVL K++ + AS+TFV Sbjct: 69 SKT---------GKAILKESSDAVGPWRERVALAAASAILAEGLPVLAKEFSIAASVTFV 119 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPG 209 MPRP+G PK TPPAVKRPDLDKLARA+LDGLTDVVW+DDSQV DLH RKVLAEL+Q PG Sbjct: 120 MPRPAGAPKRSTPPAVKRPDLDKLARAILDGLTDVVWIDDSQVVDLHCRKVLAELTQPPG 179 Query: 210 CHMRIASPGWGDE 222 H+RIASPGWGDE Sbjct: 180 AHIRIASPGWGDE 192 >UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO Length = 139 Score = 134 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 27/156 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + +PGKP QG F + + A ++ + + Sbjct: 3 IEFTIPGKPVGQGRPRFSRHRGYVQ------------TYDPAKSRQYKAIATMCAQRVYS 50 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 + P++ ++ K+PD+D + + ++D L Sbjct: 51 GE-----PLETPLKITVKAYFGLYKSYTNKRREACLSGQEVPTKKPDIDNIVKGIMDSLN 105 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 V++ DD QV L A K AE +P + + Sbjct: 106 GVIYHDDKQVIQLVAFKAYAE---KPRVEVTVEELE 138 >UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1J2_9PROT Length = 143 Score = 133 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 26/159 (16%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + VPG P +G F RG + + + + LA+A Sbjct: 1 MTSITFTVPGTPVGKGRPKF------------ARRGKFVTTYTPEKTASYENLVKLAAAK 48 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLD 179 AM + S+ + P+ + +PD+D + + + D Sbjct: 49 AMDGRQ----PIDGAAQVSIWLWVTPPASWSQKKQRQALAHEIFPTTKPDMDNVVKGIFD 104 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 + ++VW DD QV DL K +E ++I G Sbjct: 105 AMNEIVWQDDKQVIDLSCYKRYSE---TARAEVKITQIG 140 >UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli RepID=A8U815_9LACT Length = 145 Score = 130 bits (327), Expect = 4e-29, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 27/163 (16%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++++ VPG+P PQG F ++ +A + Sbjct: 2 EIKITVPGQPVPQGRPKFTTIGG------------HARAYDPKKSVDYKRIVAYHAMQ-- 47 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGL 181 P + + + K V +PD D A+ LD + Sbjct: 48 ---HKPKQLLEGELEVEILIYKECLKSFSKRNMELAEIGQLRPVTKPDADNYAKGPLDAM 104 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAI 224 ++W DD Q+ DL ARK + +P + + + G + Sbjct: 105 KGIIWKDDGQIVDLIARKYYSS---KPRIEITVRTLGEIQTEL 144 >UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G3Y0_NOVAD Length = 135 Score = 129 bits (325), Expect = 6e-29, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 24/155 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + VPG P +G F + + IA A++ Sbjct: 1 MMEFSFTVPGVPVGKGRPRF--------------VKATGRAYTPEKTASYESLIAYAASQ 46 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP---PAVKRPDLDKLARAVLDGLTD 183 AM A P+ + V P P+ K +PD D + +A+ D L Sbjct: 47 AMRGAQ----PINAPIGIKVQAVFPIPASWTKKRKESAVWHTSKPDGDNILKALGDALNG 102 Query: 184 VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 +VW DDSQV KV ++ PG H+ + + G Sbjct: 103 IVWADDSQVARTSIAKVYGDV---PGLHVFVEALG 134 >UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncultured marine microorganism HF4000_APKG7N23 RepID=B3TA02_9ZZZZ Length = 145 Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 17/154 (11%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 +++ +PGKP QG F +G ++ ++ IA + A Sbjct: 2 RIKFTLPGKPVAQGRPRF------------YRKGNFVVATDPKPSKVYKADIAYIAQKAC 49 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA----VKRPDLDKLARAVLDGLTDV 184 AGL L + P+ + P P + P KRPD D +A++V DGL V Sbjct: 50 EEAGLDGL-FEGPLGIQILAYFPCPKSKWRVKNPRPEEHHSKRPDADNIAKSVKDGLNGV 108 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 ++ DD Q+ +L RK +A + P + + Sbjct: 109 LYHDDGQISELIVRKRIAAQGEGPRIEVELYKME 142 >UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9_CLOBH Length = 133 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 42/154 (27%), Gaps = 29/154 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ + GKP + F + + + L Sbjct: 1 MKIVIDGKPMGKQRPRFNS--------------KTGNTYTPDKTVNYENWVKLCYQQQCK 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 V A + P T K +PD+D +A+ +LD L Sbjct: 47 GEK-----LTGEVVAFINAYYVIPKSTSKKNKKDMLAGIIRPTIKPDVDNIAKVILDSLN 101 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 + + DD Q+ K E P + + Sbjct: 102 GLAYKDDKQIVFCAISKWYGE---NPRVEVILEE 132 >UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas aeruginosa RepID=A6V3Y0_PSEA7 Length = 149 Score = 126 bits (316), Expect = 7e-28, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 54/163 (33%), Gaps = 26/163 (15%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADA 127 R + VPG+P +G G G + A + +A+A+ +A Sbjct: 5 RPVVFTVPGEPVGKGRPRI------------GRVGAHARMFTPAKTVAYEGLVAMAAQEA 52 Query: 128 MLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDG 180 + L PV L P P K + D D +AV D Sbjct: 53 LAGRSL----IAGPVLIELRMFHPIPRSWSKKRQAMALVGEVMPTVKCDADNCLKAVCDA 108 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEA 223 L V W DD+QV ++ K AE+ P ++I Sbjct: 109 LNGVAWKDDTQVVNVMLAKRYAEV---PRVEVKIVPLMAQGAQ 148 >UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZCC2_EUBR3 Length = 149 Score = 126 bits (316), Expect = 7e-28, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 25/164 (15%) Query: 65 NGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALAS 124 +Q+R +PG+P + F + + + L Sbjct: 3 EDMKQIRFTIPGQPFGKQRPKFSRAGAYV------------KTYTPKETTSYENLVKLFY 50 Query: 125 ADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAV 177 +A + + + + P T K K+PD D + + V Sbjct: 51 NEAAKGK---MFPEGAMLDVRIIAYYEIPKSTSKKKRREMLEHRIRPTKKPDWDNIGKIV 107 Query: 178 LDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGD 221 D L V + DDS V D RK +E P + I G Sbjct: 108 CDSLNLVAYHDDSAVVDAQVRKFYSE---TPRIDVMIKVVGPDQ 148 >UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN Length = 145 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 27/162 (16%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ + P PQ F + ++++IA + Sbjct: 2 IKFTINIPPHPQERPRFRNAGNFVQ------------TYDPPKSKEYKKKIANVAKM--- 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 P P++ L F + P K++ RPD+D +A+LD L Sbjct: 47 --YAPGTPISTPIQIKLIFFVSIPKSKSKAWKQRALLGQEFPSVRPDIDNYVKAILDALN 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAI 224 +++ DD ++ +L A K ++L P + I + Sbjct: 105 GIMFSDDGKIVELIAYKRYSDL---PRTEVSITELVSEVQTK 143 >UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KHD7_PSEPG Length = 146 Score = 124 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 58/157 (36%), Gaps = 26/157 (16%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 + VPG+P +G G G + + IALA +AM Sbjct: 6 PVSFLVPGEPVGKGRPRI------------GKVGNHARMFTPQKTASYEGLIALAGTEAM 53 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGL 181 L + V + V+ P K K+PD+D + +A+ DGL Sbjct: 54 AGRTL----LEGAVMVEMRIVLAIPQSMSKKRKAMAIAGELFPTKKPDMDNVIKAIYDGL 109 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 VVW DD QV D RK E+ PG H+RI Sbjct: 110 NGVVWKDDVQVVDAFVRKRYGEV---PGVHVRIVPLE 143 >UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q03G49_PEDPA Length = 139 Score = 123 bits (309), Expect = 4e-27, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 27/158 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R+ V G+P PQG F G +++ + Sbjct: 2 IRIEVAGEPVPQGRPRFSGRGGFVRS------------YDPPKSKEYKKHVKEEVQQQYH 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 + + L+ P K + + D+D +AV D T Sbjct: 50 GK-----PLEGQLLVELSVYRPIQKSISKKERDMRLLGFHRPIVKGDIDNYFKAVTDACT 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWG 220 ++W+DD+Q+ K +E P M + + Sbjct: 105 GLLWVDDAQIVSTKTNKYYSE---NPHVEMLVIPYEFE 139 >UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 Length = 139 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 30/157 (19%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G+P + F K + + E I + Sbjct: 6 KVNFTIYGEPVGKERPRFNLATK--------------RTYTPNKTKSYEELIKWLYQSKV 51 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGL 181 + ++ +L K K+PD+D + + V D L Sbjct: 52 KH------YFEGYIKMTLRCYYSIAKSNSKKIKEQKRNNVLRPSKKPDIDNVIKVVADSL 105 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 + + DD+Q+ ++ A K ++ +P + + Sbjct: 106 NGIAYKDDTQIVEVVASKYYSD---KPRVEVILEDIS 139 >UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCV3_9FIRM Length = 143 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 42/156 (26%), Gaps = 26/156 (16%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 VPGKP + RG + + + Sbjct: 1 MTTFSFTVPGKPFGKQRPKATR------------RGVHASVYTPKETVNYENLVVAMFKQ 48 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLD 179 VR ++ P K + +PDLD + + + D Sbjct: 49 KY----PLDKPIDGEVRGTIRAFYQIPQSKSKKVKERMLNGEIKPMVKPDLDNIQKVIYD 104 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIA 215 L + + DDS + + K +++ P + I Sbjct: 105 ALNGIAYTDDSHIIAMRCAKFYSDV---PRVEVLIE 137 >UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteobacteria RepID=C1D8H9_LARHH Length = 145 Score = 121 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 56/160 (35%), Gaps = 25/160 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 +R VPG P +G G + + IAL++ Sbjct: 1 MTIVRFEVPGTPVGKGRPKVSTRG-----------GKFARMYTPEKTASYEGLIALSARQ 49 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLD 179 AM L PV SL + P+ K K+PD D + +AV D Sbjct: 50 AMGGRPL----IDGPVDVSLMIRLAVPASWSKKKQAAALAGQVLPTKKPDADNVLKAVFD 105 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 G+ VVW+DD Q + RK A Q PG + + G Sbjct: 106 GMNGVVWVDDVQACGVMLRKRYA---QTPGVTVVVRQMGG 142 >UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A4JMI5_BURVG Length = 158 Score = 121 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 26/160 (16%) Query: 66 GGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 G R++ VPGKP +G F+ RGP + + + + +A+ Sbjct: 14 GARRVVFVVPGKPVAKGRPRFVR------------RGPHVRTYTPEPTERYENLVKMAAR 61 Query: 126 DAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVL 178 +AM + PVR + +P P+ + A K+PD D + +A+ Sbjct: 62 EAMRDSE----PYAGPVRLIVDIGVPIPASWSQRRQREAAAGVIGATKKPDADNVVKALK 117 Query: 179 DGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 DG+ VV+ DD QV DL K A PG + Sbjct: 118 DGMNGVVYGDDGQVVDLWVSKRYAT---TPGVRIEAIELN 154 >UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM18_PEDAC Length = 146 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 27/154 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R+ VPG+P PQG F G +++++A A D Sbjct: 2 IRIEVPGEPVPQGRPRFSGRGGFVRS------------YDPPKSREYKKKVAAAVKDQYH 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 Y V L+ P K V + D+D +AV D T Sbjct: 50 GD-----PVDYAVHVQLSIYRPIQKSLSKKEREMRLLGFHRPVVKGDIDNYFKAVTDACT 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 ++W+DD+Q+ K +E P M + Sbjct: 105 GLLWVDDAQIVSTKTNKYYSED---PHVEMLVMP 135 >UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9K9_9FIRM Length = 135 Score = 119 bits (299), Expect = 6e-26, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 29/155 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + V G P +G F + + + I A L Sbjct: 2 IEFCVFGDPRGKGRPRF-----------------RGHAYTDSKTRAYERMI----QGAFL 40 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-------PPAVKRPDLDKLARAVLDGLT 182 +G + +K PV + P+ K +K+PD D + + V D L Sbjct: 41 QSGESMFPEKVPVGVEVECYFRIPTSYSKRRKGLCRENLELPLKKPDGDNVLKIVCDALN 100 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHM-RIAS 216 + + DD+QV D+ RK + + Sbjct: 101 GLAYKDDTQVSDMIIRKRYGRNEGYIRVRIWEVKP 135 >UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P3C6_9CLOT Length = 144 Score = 119 bits (298), Expect = 8e-26, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 24/161 (14%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 +R VPG P + ++ + + I Sbjct: 1 METVRFTVPGAPKGKAR-----------AKTVRSKKGGTFSYTPEGTMLYENLIKCCYRQ 49 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLD 179 + + + P++ ++ P T K K+PD+D +A+++LD Sbjct: 50 ---ESNNIIFNDGQPLKVTIIAYYPIVKSTSKKKKQQMLEDLMFPTKKPDIDNIAKSILD 106 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWG 220 L + + DD+QV LH K AE P + I G Sbjct: 107 ALNKLAYRDDTQVVTLHMEKHYAED---PRVEVEIEEIKNG 144 >UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IDV7_9CLOT Length = 158 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 45/166 (27%), Gaps = 41/166 (24%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ +PG+P +G F + + + Sbjct: 16 IKLTIPGEPCAKGRPRVGKFG----------------TYTPEKTLNYETLVKELYIIQHA 59 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-----------------AVKRPDLDK 172 + + ++ + P G P K+PD D Sbjct: 60 NKK-----LQGQLKIDIKAYFKIPQGEIPKAKKPKPQTLQRYNDILNGKIRHTKKPDWDN 114 Query: 173 LARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 + + + D L + + DDSQ+ K + P + I+ Sbjct: 115 VGKIISDALNGLAYDDDSQIVSAIVEKFYSND---PRVEVEISEVA 157 >UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcus pneumoniae RepID=C1CGH5_STRZJ Length = 143 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 28/161 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ + +P PQ F RG + WR L A+ + Sbjct: 1 MKLTLNIEPKPQSRPRF------------ARRGSFTTTYEDKDMKTWRNHCQLLIANQYM 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP---------PAVKRPDLDKLARAVLDG 180 + +R L F + P K P K+PD+D +A+ D Sbjct: 49 GQP----ILEGALRTRLRFYIKPPQYISKVKKNQQALLDEIIPVGKKPDIDNYEKALYDS 104 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGD 221 ++ +V+ DD Q+ K + P + I Sbjct: 105 MSGIVFQDDGQIALHDVGKFYS---LNPRIEVEIEVMKSLS 142 >UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia pseudomallei Pasteur 52237 RepID=A8HKV5_BURPS Length = 166 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 30/172 (17%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++ + +P +G + + + ++A + Sbjct: 2 NGEVHITLPFAAIGKGRPRVYR----------------GIASTPPKTRAYEHQVATLARA 45 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLD 179 AM L P+R + + P PK +PD+D A+A+LD Sbjct: 46 AMRGR----LPFDGPIRVLIEIDVEIPKTWPKYRRADALAGRVWPSVKPDIDNCAKAILD 101 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAAWQAAN 231 G+ + + DD+Q+ K A +Q + + +A + AN Sbjct: 102 GMNGIAYRDDTQIVIALLSKRYASDAQ---VRIAVEEIAGQTAQKSAQRRAN 150 >UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus RepID=B3XS14_LACRE Length = 149 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 27/156 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ +P Q +K V +++++ + Sbjct: 1 MKIIFNIEPVEQARPRATKTRKGIRL------------YDPKKVSTYKKQLGMMCKFQYK 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 P+ SL F S T K V +PD D ++ LDGL Sbjct: 49 DK-----PLDGPLIVSLKFYRHIQSSTSKKERELRITGAHRPVVKPDTDNYIKSTLDGLN 103 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 ++W DD+Q+ + A K ++ P + + Sbjct: 104 GLLWEDDNQIVKIVAEKYYSDR---PRIEIEVERLE 136 >UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus RepID=YQAN_BACSU Length = 142 Score = 117 bits (292), Expect = 4e-25, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++ V G+P QG A +++ +AL ++ Sbjct: 1 MDCIKFTVYGEPVAQGRPRGSIRNGKV------------HMRDPAKSKYFKQYVALVASQ 48 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP---------PAVKRPDLDKLARAV 177 P PV + P P S +PD+D + V Sbjct: 49 -----HRPETIITGPVSMDVKVYRPMPKSVSNSKKKKEKAEKGLLRPTTKPDVDNYVKGV 103 Query: 178 LDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 D L +++ DDSQV DL K +E +P + I Sbjct: 104 KDALNHLIYKDDSQVVDLKVSKFYSE---EPRVEVMIREVS 141 >UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3R6_RUMGN Length = 136 Score = 116 bits (291), Expect = 5e-25, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 27/154 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + + +PGKP + F + + + + +A ++ Sbjct: 1 MVITIPGKPVGKARPRFRRAGFKV------------ITYTPPENKKYEKEVARIYKQSI- 47 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 VL P+R + P P K K+PDLD +A+ +LDGL Sbjct: 48 ----GVLYTDIPLRVRILAKFPIPESWSKKNKEKALKGEIKPNKKPDLDNIAKIILDGLN 103 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 V + DD QV L KV ++ +P + IA Sbjct: 104 GVAYTDDKQVTSLEIEKVYSD---EPCVVVYIAE 134 >UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Streptococcus phage M102 RepID=A7DYE2_9CAUD Length = 145 Score = 116 bits (289), Expect = 8e-25, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 28/160 (17%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 ++ + +P Q F + + + WR + + +A + Sbjct: 5 KIVINLEPKAQSRPRFARCGRGV------------VAYEKKEMRVWRAKCSELIEEAFRA 52 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP---------PAVKRPDLDKLARAVLDGL 181 L + P++ +TF + P K+PD+D +A+LD + Sbjct: 53 EEL----MEGPLKIDVTFYILPPKYISSKKKLKEKLEAEEIFCDKKPDVDNYLKALLDSM 108 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGD 221 T V++ DD QV + ARK+ + +P I D Sbjct: 109 TGVIFKDDGQVVECRARKLYS---LKPRIEFEIKEMLDND 145 >UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter sphaeroides ATCC 17029 RepID=A3PHF9_RHOS1 Length = 144 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 32/170 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + +PGKP + +F + A + + + Sbjct: 2 VSFVIPGKPFAKQRHNFS--------------RATGRAFTPKATVSFESTVRDIAL---- 43 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-----PPAVKRPDLDKLARAVLDGLTDV 184 + PV + PK P ++PDLD + +++LDGL + Sbjct: 44 --PKFPRPLEGPVSIRIEATFVPAPSWPKKRRLACLGQPHTQKPDLDNVEKSILDGLNRI 101 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAAWQAANGGA 234 + DDSQV + K ++Q + + G + +WQAA A Sbjct: 102 AFADDSQVARVVKEKRWGPVAQT---VVVVEPLG----PLPSWQAAEAVA 144 >UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C6C Length = 164 Score = 112 bits (280), Expect = 8e-24, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 19/159 (11%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++L F+PG PAP GSK F+G K T+ ++ + WR + A+ + Sbjct: 2 NQRLSFFIPGVPAPGGSKRFVGIGKK-------TKRAILVDAAGQKNKDWRTAVGWAAHE 54 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT------PPAVKRPDLDKLARAVLDG 180 +R + TF MPRP G + RPD KLAR+ D Sbjct: 55 HFKGEV-----LTGALRVTFTFFMPRPKGHHGKRGLLPSAPAFPITRPDALKLARSTEDA 109 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 LT +VW DD+QV D +K A+ S GC + I Sbjct: 110 LTGIVWRDDAQVVDGGQKKRYAD-SCSAGCLVEIEELAS 147 >UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillus crispatus RepID=C7Y630_9LACO Length = 161 Score = 112 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 43/169 (25%), Gaps = 39/169 (23%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +PG+P + R + + A + + + + A Sbjct: 6 IKFVIPGEPQSKERPR------------TVRRAGGVRTYTPAKTHRYEDIVRYFAVYARK 53 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 S+ P K K+PD D +A+ + DG+ Sbjct: 54 -EHKISEPINSQCGVSIKAYFGIPKSFSKKRRELCLKGKERPTKKPDSDNIAKIIFDGMN 112 Query: 183 ----------------DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIA 215 D + DD + K + P + + Sbjct: 113 PKMKLNKALHKKMVLQDGFYEDDKLIVTHSVEKWYS---MHPHVEVTVT 158 >UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM15_PEDAC Length = 148 Score = 112 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 30/155 (19%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ + G+P + +++R L + Sbjct: 17 IKLVIDGEPVAASRPRVTR---------------KGWAYIAPKYKAYKDRTHLIVKNQYK 61 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 ++ TF K+ + +PD+D L +AV D T Sbjct: 62 GE-----PLMGALKVKTTFYRSVQKSVSKAERNRRLSNEHRPIFKPDIDNLFKAVTDACT 116 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 VVW DD+Q+ + K+ AE +P M + Sbjct: 117 GVVWHDDNQIVSVEMDKMYAE---EPRVEMEVHEL 148 >UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JU78_BURP8 Length = 180 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 50/158 (31%), Gaps = 30/158 (18%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ V G P + + + + + AM Sbjct: 23 RVSFTVEGVPVGKARARVTRNG----------------TYTPKKTRRYEHDVRTVAMQAM 66 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGL 181 + + V SL +P P K+ V RPDLD +AV D L Sbjct: 67 ----GALRPCRDAVHVSLVVFLPVPERFSKAKRAAALAGLVYPVVRPDLDNFEKAVTDAL 122 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 VV+ DDSQ+ D+ K ++ P + AS Sbjct: 123 NGVVYHDDSQICDVVKSKRYSDR---PRVVIECASING 157 >UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3_9ACTO Length = 228 Score = 111 bits (276), Expect = 3e-23, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 13/163 (7%) Query: 62 YERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIA 121 Y N L V G P PQGSK +G+ ++ + +++ESS V PWR+++ Sbjct: 72 YPWNTHPALTATVHGLPGPQGSKTPIGYGRSRTTG----KTIPLMRESSTKVKPWRDKVQ 127 Query: 122 LASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL 181 A A+ ++ PV A +TF MP+P PK PD+DKL R+ D + Sbjct: 128 AAITAALHTS----APLAGPVYAHITFTMPKPVRAPKRRRTYPAVTPDIDKLERSTYDAI 183 Query: 182 T-DVVWLDDSQVDDLHARKVLAELSQ----QPGCHMRIASPGW 219 T W DD V + HARKV + QPG +R+ + G Sbjct: 184 TKAAAWKDDGCVIESHARKVYPDEHPDALDQPGALIRLYTLGD 226 >UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillus jensenii SJ-7A-US RepID=D0DND1_9LACO Length = 135 Score = 111 bits (276), Expect = 3e-23, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 29/156 (18%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + GKP + + + ++A +++ A Sbjct: 2 EISFSIDGKPFGKERPRPNRTGHGV--------------YTPERTKMYEYKVAQSASLAF 47 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGL 181 +R ++ K + PD D +A+AVLDG+ Sbjct: 48 FDE-----PLDSDIRVCISAYFGVAKSDSKRKKQAKISGEIRPARTPDADNIAKAVLDGM 102 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 VV+ DD QV +L K AE +P + + Sbjct: 103 NGVVYKDDKQVIELKVTKQYAE---KPRVDVSVEEI 135 >UniRef50_C0X7X1 Possible crossover junction endodeoxyribonuclease RusA n=37 Tax=root RepID=C0X7X1_ENTFA Length = 144 Score = 110 bits (275), Expect = 4e-23, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 29/162 (17%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++R+ +P +P PQ F + +A+ +++++ + Sbjct: 1 MEEMRIILPIEPKPQSRPRFARRGNYVQ------------TYEDSAMRAYKQKVKVYLRK 48 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGT---------PKSYTPPAVKRPDLDKLARAV 177 A P L +K P+ A +TF + P K K+PDLD +AV Sbjct: 49 A-----KPKLIEKGPIMAHVTFYVQAPKSALSNKQKRLDVKLERKYCDKKPDLDNYFKAV 103 Query: 178 LDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 D +++ +D Q+ + +K+ + + I S Sbjct: 104 TDAAEGILYKNDGQIAVMVCQKLYSMRQ---RTEIEIMSLEE 142 >UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65KQ9_BACLD Length = 140 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 27/155 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + + +P +P T + +++ +++ I L + M Sbjct: 2 ITLNIPVEPMGAVR---------------MTGRGKFVNKNAQRYLAYKDFIKLHAQKQMK 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-----AVKRPDLDKLARAVLDGLTDV 184 L P + F MP P K +K+PD+D L + V D L Sbjct: 47 GQQL----YTGPTVVKVLFSMPIPKSWSKKKQQEAISTVHIKKPDIDNLVKGVFDALNKT 102 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 W DD+QV + KV ++PG ++I Sbjct: 103 AWHDDNQVFMVIGAKVYG---KEPGIEVQIMGLAE 134 >UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJU5_9CAUD Length = 151 Score = 106 bits (265), Expect = 5e-22, Method: Composition-based stats. Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 7/147 (4%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ FVPG APQGSK+ G ++++S + PWR + + + AM Sbjct: 2 EIDFFVPGLAAPQGSKNSY----TIRNKAGKVVGVNTVEQNSKTLRPWRADVKVFAQKAM 57 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPK-SYTPPAVKRPDLDKLARAVLDGLTDVVWL 187 G + + FVM RPSGTPK TPPAVK+PDLDKL RA+ D L V+ Sbjct: 58 QERGQQIC--DDAIYLHCDFVMKRPSGTPKTRRTPPAVKKPDLDKLIRAIGDALKGTVYT 115 Query: 188 DDSQVDDLHARKVLAELSQQPGCHMRI 214 +DS++ ++ A K +AE+ + PG + + Sbjct: 116 EDSRIVEIRATKRIAEIGETPGVFIHV 142 >UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Y8_MAGSA Length = 134 Score = 106 bits (264), Expect = 7e-22, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 27/150 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + + +PG+ +G + A IA + DAM Sbjct: 3 VVVTIPGEVTGKGRPRIW----------------NGRAVTPAKTRSKEGVIASLAMDAMG 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-------PPAVKRPDLDKLARAVLDGLT 182 PV ++ V+P + K K+PDLD + + VLD + Sbjct: 47 G----CDPLTGPVLVTIEAVLPVATSWSKKRRAAALDGTEQPTKKPDLDNVVKLVLDAVN 102 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHM 212 +V+ DD+Q+ + A K +Q + Sbjct: 103 GIVFADDAQITHIIASKRYGVFAQTTLTVV 132 >UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LU68_9FIRM Length = 140 Score = 105 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 45/160 (28%), Gaps = 28/160 (17%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 V G P QG F A ++ + + +A Sbjct: 1 MSTYTAVVLGDPVAQGRPRFSRQGGFV------------KAYDPAKSRDYKSYVRMIAAQ 48 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLD 179 PV + + SL P G PK V +PD+ + + V D Sbjct: 49 -----HAPVTPVEGAIEFSLRIYRAIPKGMPKYKREAAKEGRLRPVTKPDVSNVLKGVED 103 Query: 180 GLTDVVWLDDSQVDDL-HARKVLAELSQQPGCHMRIASPG 218 L V + DDSQ+ K E P + + Sbjct: 104 ALKGVWYKDDSQIVGYGVLGKWYDER---PRIEIMMRELE 140 >UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6N6_9BACT Length = 154 Score = 104 bits (259), Expect = 3e-21, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 60/163 (36%), Gaps = 26/163 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + + FV G P Q F + A E W+ RIA+A+ Sbjct: 2 NKPIVFFVSGDPKGQPRPR--AFARRVGNKFVARVFDAGTAEG------WKSRIAVAAK- 52 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP----------PAVKRPDLDKLARA 176 + P PVR L F PRP ++ + +PD D LA+A Sbjct: 53 ----SLTPAQPYTDPVRVRLHFFFPRPKAHFRTGKNAHLMRDDAPSYHIAKPDCDNLAKA 108 Query: 177 VLDGLT--DVVWLDDSQVDDLHARKVL-AELSQQPGCHMRIAS 216 VLD +T W DD QV L K + + PG ++ ++ Sbjct: 109 VLDAMTQLGGWWGDDQQVASLAVCKSYVSTIQLHPGVNISVSQ 151 >UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G1B4_9FIRM Length = 155 Score = 104 bits (258), Expect = 3e-21, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 23/160 (14%) Query: 64 RNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 R G + + VPGKP + K G I + + I Sbjct: 9 RAGMQSVTFQVPGKPQGKAR------AKTVRNKSTG----NIHSYTPEKDMLYENYIKAQ 58 Query: 124 SADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY-------TPPAVKRPDLDKLARA 176 + L PV + P K +K+PD+D + + Sbjct: 59 FQNRANGFYLER---GKPVMLRIIARFLPPKSVSKKRQLDMLEGRELPLKKPDIDNIVKV 115 Query: 177 VLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 V D L V + DD+Q+ + A K + + G + + Sbjct: 116 VADALNGVAYHDDTQIAMVIAAKTYSAME---GLDITVEE 152 >UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Tax=Lactobacillaceae RepID=C7TBL4_LACRG Length = 113 Score = 103 bits (257), Expect = 5e-21, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 16/121 (13%) Query: 104 AILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPK----- 158 +++ + +++ L + P+R S+ K Sbjct: 1 MGHAYDPTKSRNYKQHVKSVASE------LNIEPLSGPIRVSMEIYRQLQKSGSKALIRR 54 Query: 159 --SYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 +PD+D ++V D LT ++W DD+Q+ ++H K ++ QP + Sbjct: 55 KKEGKVRPTVKPDVDNYYKSVSDALTGILWEDDNQIVEIHVGKWYSD---QPRVEIEAEE 111 Query: 217 P 217 Sbjct: 112 I 112 >UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4ZC15_9CAUD Length = 138 Score = 103 bits (256), Expect = 6e-21, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 29/143 (20%) Query: 76 GKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPV 135 G P F G A ++ +A LP Sbjct: 18 GNPKGSSRPRFSG---------------GGHTYMPAPYVKHKKFVAD---------QLPH 53 Query: 136 LDKKYPVRASLTFVMPRPSGTPKSYTP-----PAVKRPDLDKLARAVLDGLTDVVWLDDS 190 L P+R ++ F PK P +PD+D L + +LD +++W+DD+ Sbjct: 54 LMIDKPIRLTVEFYFKPSKSWPKYKKEACIGNPHTIKPDIDNLLKTILDAGNNLLWVDDT 113 Query: 191 QVDDLHARKVLAELSQQPGCHMR 213 + ++ K AE ++ + Sbjct: 114 LIYEIRTFKKYAETARTVLTIIE 136 >UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales RepID=B1M2L8_METRJ Length = 152 Score = 103 bits (256), Expect = 6e-21, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 53/167 (31%), Gaps = 23/167 (13%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 L + +PG P +G + I + + LA+ Sbjct: 2 SETLIIRLPGAPRGKGRHRAQLVHRG--------GVARIHSHPDQKTEAYESALRLAAGA 53 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKS-------YTPPAVKRPDLDKLARAVLD 179 M L P+ + MP P+ K +PD D +A+ V D Sbjct: 54 VMRGRAL----LTGPLEVRIFATMPIPASWSKRKRLDAIERRLRPTTKPDWDNIAK-VSD 108 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAA 226 L VVW DD+ V D RK E P +++ + AA Sbjct: 109 ALNHVVWADDASVVDGLVRKFYGE---TPELVIQVTALEPQAVRAAA 152 >UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Tax=Corynebacterium jeikeium ATCC 43734 RepID=C8RQI5_CORJE Length = 143 Score = 102 bits (255), Expect = 8e-21, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 68/153 (44%), Gaps = 17/153 (11%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 L FVPG APQGSK+ + +L ESS V PWR+ ++ + Sbjct: 8 LTFFVPGIAAPQGSKNAYRRGQKI-----------VLVESSKKVKPWRDTVSQVARFVCK 56 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 V ++ FVMPR PP V++PDLDK+ RAV D LT + + DD Sbjct: 57 ------RPIDGAVTVAVHFVMPRTKAMRDKPAPPMVQKPDLDKMLRAVNDALTGIAYADD 110 Query: 190 SQVDDLHARKVLAELSQQPGCHMRIASPGWGDE 222 SQ+ L K A ++ G H+ I G Sbjct: 111 SQIVRLTGSKRRAAPGEKTGAHITITPFMEGAA 143 >UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BFH9_CLOPE Length = 131 Score = 101 bits (250), Expect = 3e-20, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 41/155 (26%), Gaps = 31/155 (20%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ V GK + + + + + + Sbjct: 1 MKVVVTGKIRGKARPRVCR----------------GHAFTPKDTVQYEKLVRDCYQEQ-- 42 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSY-------TPPAVKRPDLDKLARAVLDGLT 182 + ++ + P K K+PD D + + +LD L Sbjct: 43 ----DGRYLEGSIKVLIVAYYKIPKSYSKKRVQAIRDGLEKPRKKPDADNIGKIILDSLN 98 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 + + DD+ V D K E + ++ Sbjct: 99 GIAYKDDAYVADFRVIKEYTEELE--RVEFELSEV 131 >UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7_STAAE Length = 135 Score = 100 bits (249), Expect = 4e-20, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 46/145 (31%), Gaps = 29/145 (20%) Query: 78 PAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLD 137 P F + + A + A + +P L+ Sbjct: 14 PMGSPRPRFRNTGRFVQ------------TYMPTAYTNHK---------AYIQGQMPKLN 52 Query: 138 KKYPVRASLTFVMPRPSGTPKSY-----TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQV 192 + ++ L F P K V +PD+D L + VLD VW DD+Q+ Sbjct: 53 LERALKIELDFYFPLLKSWSKKKKSEMVGQYKVTKPDIDNLIKTVLDACNGHVWKDDNQI 112 Query: 193 DDLHARKVLAELSQQPGCHMRIASP 217 ++ + K +P MR+ Sbjct: 113 TEITSSKRYG---LEPKIIMRVEEV 134 >UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes RepID=C2E9I5_9LACO Length = 159 Score = 100 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 6/134 (4%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 F + + + + P + + A L P P+R Sbjct: 23 FFVALEDVPTCTHQQKKVRVNRGIPIFYEPEKLKKTRALLMERLDEHKPDEPMHGPLRLV 82 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAEL 204 +T+ + +PD+D + + + D +T W DD V L + K A++ Sbjct: 83 VTWCFKKKGKHVDG--EYKTTKPDVDNMLKLLQDCMTRLGFWDDDRFVVSLISEKYWADV 140 Query: 205 SQQPGCHMRIASPG 218 PG ++ I Sbjct: 141 ---PGIYIEIKEMN 151 >UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q044S5_LACGA Length = 153 Score = 100 bits (248), Expect = 5e-20, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 46/171 (26%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G P + + + A + + + + ++ Sbjct: 2 RVNFTIEGPPIGKARPRVTR----------------TVTYTPAKTARYEDLVRYTAINSF 45 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-------PPAVKRPDLDKLARAVLDGL 181 + DK P+ + P K K+PD D + + ++DG+ Sbjct: 46 KG----IFDKDEPLDVKIMAYFEVPKSLSKKRKALCLANQELPTKKPDADNVGKIIMDGM 101 Query: 182 T----------------DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 V+ DD QV L +K AE + +RI Sbjct: 102 NPKMRRDKRLHKMVEVMRGVYHDDKQVTTLLVKKRYAERA---RVDVRIKR 149 >UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscillatoriales RepID=A0YIY0_9CYAN Length = 322 Score = 99.9 bits (247), Expect = 6e-20, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 40/165 (24%), Gaps = 32/165 (19%) Query: 57 SARVTYERNGGRQ-LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGP 115 + YE N +R +PG P+ Sbjct: 186 KSESNYEPNSTENLVRFCIPGTVVPKARPRVTSNG----------------TYMPNRYRE 229 Query: 116 WRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLAR 175 WR R + M V SL F DLD +A Sbjct: 230 WRNRAEIELYRQMSQFHSTHKFPLQKVAVSLRFF------------GNHRTNSDLDNMAG 277 Query: 176 AVLDGLT---DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 A LD LT V +DD +++ G + I Sbjct: 278 ACLDALTLNGAGVLMDDRLSCLPRLTVEYVSGTKETGVWIEIQPL 322 >UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Tax=Clostridium RepID=Q0TSJ9_CLOP1 Length = 128 Score = 99.5 bits (246), Expect = 8e-20, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 42/149 (28%), Gaps = 29/149 (19%) Query: 72 MFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSA 131 + V GK + + + + + Sbjct: 2 VVVTGKIRGKARPRVCR----------------GHAFTPKDTIEYEKLVRECYKKQ---- 41 Query: 132 GLPVLDKKYPVRASLTFVMPRPSGTPKSY-------TPPAVKRPDLDKLARAVLDGLTDV 184 + ++A + P K K+PD D + + +LD L V Sbjct: 42 --DGRYLEGAIKALIIAYYKIPKSYTKKRVQVIRDGLEKPTKKPDADNIGKVILDSLNGV 99 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMR 213 + DDSQ+ DL +K E ++ R Sbjct: 100 AYKDDSQIIDLRIKKEYTEELERVEFEFR 128 >UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A6QIJ7_STAAE Length = 138 Score = 99.5 bits (246), Expect = 8e-20, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 31/161 (19%) Query: 64 RNGGR-QLRMFVPGK-PAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIA 121 R+ +++ + P F T+G ++ Sbjct: 2 RDYMEIEIKFNETFEAPMGSPRPRFS------------TKGRYAHTYMPTKYTEHKK--- 46 Query: 122 LASADAMLSAGLPVLDKKYPVRASLTFVM-----PRPSGTPKSYTPPAVKRPDLDKLARA 176 L +P L+ + ++ L F ++ V +PD+D L + Sbjct: 47 ------YLQNQMPKLNLENALKIELEFYFTPPKSWSKKKKTQAIGQLKVTKPDIDNLMKT 100 Query: 177 VLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 VLD + +W DD+Q+ ++ + K +P +RI Sbjct: 101 VLDACNNYLWKDDNQIAEITSSKRYGI---EPKIIIRIEEI 138 >UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1U6_DESRM Length = 114 Score = 99.1 bits (245), Expect = 1e-19, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 42/150 (28%), Gaps = 37/150 (24%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + VPG+P P+ G + + + L +++ Sbjct: 1 MHFTVPGRPVPKYRPRV---------------GKHGNIYTPQNCREYERTVGLYASNVF- 44 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 PV + F R G DLD +A+ DGL + W DD Sbjct: 45 -----PQPLTGPVTLGVKFYFSRRPG-------------DLDNYVKAISDGLNGIAWQDD 86 Query: 190 SQVDDLHARKVLAELSQQPGCHMRIASPGW 219 QV L A + + G Sbjct: 87 RQVVKLFASLKRGSPE---RAEVVVQRIGN 113 >UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepID=B8I135_CLOCE Length = 136 Score = 98.3 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 6/134 (4%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 F K + ++ P + + A A A L+ +P PVR Sbjct: 8 FFLPMKKVPTVTHQEKQVKVVNGKPVFYEPDKLKAARAKLQAHLAKYVPDKPYTGPVRLM 67 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAEL 204 + + P +PD D L + + D +TD+ W DD+ V K AE+ Sbjct: 68 VKWCFPVTGKH--KNGEYKTSKPDTDNLQKLLKDVMTDLRFWKDDALVASEIVEKFWAEV 125 Query: 205 SQQPGCHMRIASPG 218 PG + I Sbjct: 126 ---PGIFIAIEELS 136 >UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C2M4_THAPS Length = 243 Score = 98.0 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 23/177 (12%) Query: 64 RNGGRQLRMFVPGKPAPQGSKDFMG-FKKAPEGSPPGTRGPAILKESSAAVGPWRERIAL 122 + + ++ + G P P F P + ++L P + Sbjct: 72 SSDTKGIKFTIRGNPKPLVRHRSSRGFMYNPSSAAQERFRDSLLSMLPRRYHP-----TI 126 Query: 123 ASADAMLSAGLPVLDKKYP----VRASLTFVMPRPSGTPKSYTP------------PAVK 166 +M V + + + +TF + RP P Sbjct: 127 LDDQSMDDGKAAVPNVLFSQHEFLAMEVTFRLKRPKNHFVGNKPGTGRMKPTAPGKFHNS 186 Query: 167 RPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGC-HMRIASPGWGDE 222 R D+D L + V+D L ++++DD QV L A K+L G ++I + Sbjct: 187 RTDIDNLTKFVMDSLNGLLYVDDKQVVSLSAIKLLDSEGLCEGATDVKITVVKDENA 243 >UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4F4F8 Length = 171 Score = 97.6 bits (241), Expect = 3e-19, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 11/161 (6%) Query: 62 YERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIA 121 Y+ + L + V G PQGSK +G+ ++ + + ++KESSA V PWR++++ Sbjct: 12 YDWDPVPALAIAVYGTAGPQGSKSPVGWGRSRKTG----KNIPLMKESSAKVKPWRDKVS 67 Query: 122 LASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL 181 A A+L V A +TF M +P PK PD+DKL RA D + Sbjct: 68 AAITAAILRGDA--KPLHGAVYAEITFTMAKPGSRPKRRRTYPAVSPDIDKLERATYDAI 125 Query: 182 TDV-VWLDDSQVDDLHARKVL----AELSQQPGCHMRIASP 217 T W DD +V + H RKV + QPG +R+ + Sbjct: 126 TTAKAWEDDGRVIENHNRKVYPGEHPDALDQPGAVIRLYTL 166 >UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3762E Length = 131 Score = 96.4 bits (238), Expect = 7e-19, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 6/131 (4%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 F + + A A LS P ++ + Sbjct: 5 FMNMIPPTSTQQERGCTIINGKRKYYDRGNSDAHQKLKAYLSQHRPGAPLTGALQVVTKW 64 Query: 149 VMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAELSQQ 207 P + P +PD D L +A D +T+ W DD Q+ K A+ Sbjct: 65 CFPIKAKHHDG--EPYTNKPDADNLCKAFYDIMTELGYWKDDKQIYSSITEKFWAQR--- 119 Query: 208 PGCHMRIASPG 218 PG +++I Sbjct: 120 PGIYVKIEEVK 130 >UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD Length = 146 Score = 96.0 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 43/168 (25%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +P +P PQ F + + WR+++ + Sbjct: 2 VKFTIPIEPKPQKRPRFSRWSG---------------AYEDKDMMAWRKQVTDYVKNNYE 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV------------------KRPDLD 171 ++ +TF + P K + A K+PDLD Sbjct: 47 G-----PYFDDGLKVDVTFYLKAPELVSKKPSERARDKTKQKYQDYINELLYVPKKPDLD 101 Query: 172 KLARAVLDGL--TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L +AV D + ++VVW DD+ + + RK+ + P ++I Sbjct: 102 NLEKAVYDSISKSEVVWTDDNIIVEHTTRKLYS---PNPRIEVKINEL 146 >UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA family n=2 Tax=Viruses RepID=C5VUH2_9VIRU Length = 215 Score = 95.6 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 44/165 (26%), Gaps = 21/165 (12%) Query: 57 SARVTYERNGGRQL-RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGP 115 R + N + + ++ P P S + + + G + P + ++ Sbjct: 8 KRRCCFISNTKKPILKLVSPIPP----SVNHYLAPRPFIMTKNGKKVPMVTMYETSEAKK 63 Query: 116 WRER-IALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLA 174 +++ I + K F D Sbjct: 64 YKKEFIKYVKEEVRKQKWDITCTKDKHFYFDTIFHF-------------DRVDKDEQNYY 110 Query: 175 RAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 + + D L + ++DD + K + S P + I + Sbjct: 111 KCLCDALNGLAYIDDRNIL-TRCFK-IDYDSINPRIEITIHPVDY 153 >UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7B8_9ACTN Length = 125 Score = 94.9 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 107 KESSAAVGPWRERIALASADAMLSAGLPV----LDKKYPVRASLTFVMPRPSGTPKSY-T 161 + I A+ DAM A + + PV + P P PK + Sbjct: 1 MYTPDETIRNEAAIRDAALDAMREAYPELEGLLFPFRVPVAVRIDVYEPLPKSRPKRTVS 60 Query: 162 PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGD 221 P +PD D +A+ V+DG+ VVW DDSQV ++H K +P +++ GW D Sbjct: 61 EPNTFKPDADNIAKLVMDGMNGVVWGDDSQVAEVHVVKWPRRRGIEPHMDIQVYR-GWAD 119 Query: 222 EA 223 A Sbjct: 120 PA 121 >UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB Length = 137 Score = 94.9 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 6/133 (4%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 F + + ++ P + A ++L+ +P P+R + Sbjct: 10 FFLPMDKIPTTTHQQKKVTVINGKPHFYEPESLKNARDKFTSLLAQHVPPSKLDGPIRLT 69 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAEL 204 + ++ P+ G+ +PD D L + + D +T+ W DD+QV K A+ Sbjct: 70 VKWLFPKIKGSTNG--QYKTTKPDTDNLQKLLKDCMTELGFWNDDAQVASEIIEKFWAD- 126 Query: 205 SQQPGCHMRIASP 217 G ++++ Sbjct: 127 --TVGIYVKVEEL 137 >UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=53 Tax=root RepID=RUSA_SHISS Length = 120 Score = 92.6 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 20/136 (14%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 + P + R SA +R+ + +AML GL + PV+ Sbjct: 4 YSITLPWPPSNNRYYRHNRGRTHISAEGQAYRDNVTRIIKNAMLDIGLAM-----PVKIR 58 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDSQVDDLHARKVLAEL 204 + MP +R DLD L +A D LT WLDD+QV D K+ + Sbjct: 59 IECHMP------------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM--PV 104 Query: 205 SQQPGCHMRIASPGWG 220 ++ + I G Sbjct: 105 TKGGRLELTITEMGNE 120 >UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7S400_PHATR Length = 157 Score = 92.2 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 31/161 (19%) Query: 64 RNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 R+ GR + +++ GKP P + + + +++ Sbjct: 10 RDTGRPIDVYIEGKPIPMPRPRLGRGIWFNPA--------------TRQLKEFSKKL--- 52 Query: 124 SADAMLSAGLPVLDKKYPVRASLTFVMPRPSG-----------TPKSYTPPAVKRPDLDK 172 A+L V + + +L F + RP+ P P +PD+D Sbjct: 53 --QALLPEDGVVFPRGECLEVNLFFYIRRPNSDYDGNKRINALKPGRANPFETVKPDIDN 110 Query: 173 LARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMR 213 LA+ LD + +V+ DDSQV L K+ +R Sbjct: 111 LAKFTLDAMQGIVFHDDSQVVKLLVYKLRGNEGGT-RIKVR 150 >UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8E1_9ACTN Length = 152 Score = 91.8 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 19/126 (15%) Query: 75 PGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLP 134 P + +G F + + I + + +G Sbjct: 17 PAEIVGKGRPRFTRSGR---------------TYTPRKTKRAELAIRD---EFLRVSGDR 58 Query: 135 VLDKKYPVRASLTFVMPRPSGTPKSYTPP-AVKRPDLDKLARAVLDGLTDVVWLDDSQVD 193 + PV + + PK + +PDLD + VLD L + ++DDSQV Sbjct: 59 WAKFRGPVSVHIIYGRELAKSNPKFWAGRADTGKPDLDNCGKLVLDALNGIAFMDDSQVV 118 Query: 194 DLHARK 199 ++ K Sbjct: 119 NMTIAK 124 >UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A2M1_BIFAD Length = 173 Score = 91.8 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 42/162 (25%), Gaps = 44/162 (27%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 +PG+P +G F G+ + E + + Sbjct: 7 DFDIPGEPVAKGRPRFYGY----------------RAVTPQHTRDAEELV----RNQFHM 46 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDS 190 V L F R +PDLD L + V D L + ++DD Sbjct: 47 FYPHAEPLDGDVMMILMFYKGRH------------GKPDLDNLEKLVKDALNGLAYVDDQ 94 Query: 191 QVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAAWQAANG 232 QV + + WG A + G Sbjct: 95 QVKLTLCAMLEPDR------------MAWGQRAKRLVKRRQG 124 >UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobacteria RepID=B2U8I2_RALPJ Length = 158 Score = 89.5 bits (220), Expect = 8e-17, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 23/164 (14%) Query: 83 SKDFMGFKKAPEGSPPGTRGP---------AILKESSAAVGPWRERIALASADAMLSAGL 133 P + + + ++E++A + A + Sbjct: 1 MPKITLSLPYPISANRYWASRIVKPKSGPSFVSTYVTPEAKAYKEQVAWLAKSAGVRE-- 58 Query: 134 PVLDKKYPVRASLTFVMPRPSGTPKSYTPPA------VKRPDLDKLARAVLDGLTDVVWL 187 V+ T RP + V+ DLD + +LD L VV Sbjct: 59 ---PLACRVQIDYTLYPKRPQDWERRVAKDPLQWDNTVQCIDLDNAQKVLLDALKGVVIQ 115 Query: 188 DDS-QVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAAWQAA 230 DD QV +HA + + + + + + + + A Sbjct: 116 DDGWQVRRIHAERGVPD--GEARIVVTVTTLLEESPQATLFSEA 157 >UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WLT7_EGGLE Length = 141 Score = 89.1 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 10/119 (8%) Query: 100 TRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKS 159 + + A L + PV + P PK Sbjct: 29 WKLKGCHVYTPQATIDEERA---------LGQAYKGPRHEGPVSVRIDVFRVLPGSRPKR 79 Query: 160 Y-TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 P PD+D +A+AVLDGL + + DD QV +LH K E + + Sbjct: 80 VLGEPDTMTPDIDNIAKAVLDGLNGIAYDDDKQVVELHVYKHDRERRVGDSVRISVEGV 138 >UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FRX1_PHATR Length = 386 Score = 87.6 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 21/179 (11%) Query: 64 RNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 N ++ V G P P + I+ S V +R+ + L Sbjct: 202 SNVTGRVAFTVRGNPLPLRRHRTARGFVYNPSAKAQESFRDIV---SHMVTGFRDELHLL 258 Query: 124 SADAM-LSAGLPVLDKKYPVRASLTFVMPRPSGT-------------PKSYTPPAVKRP- 168 + ++AG+P + + ++ F M RP+ T P+V P Sbjct: 259 KGTHLPIAAGVPFFPEGQALVMTILFSMKRPNNHFVANRRGMLEDGCRLKATAPSVTSPT 318 Query: 169 --DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPG-CHMRIASPGWGDEAI 224 D+D LA+ VLD +++ DD QV LH KVL E G + + + + + Sbjct: 319 RTDVDNLAKFVLDSCNGLLYEDDRQVISLHVTKVLDEQGTCLGSTQVDLRAVRDDEIPL 377 >UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=13 Tax=root RepID=RUSA_BPR1T Length = 131 Score = 86.8 bits (213), Expect = 6e-16, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 6/125 (4%) Query: 94 EGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRP 153 + +G +K A M + +K P++ S+TF Sbjct: 12 MPTTQQQKGIKKVKGKLQFYDRRGTNNYSLKAQLMKNKPKECFEKNVPLKLSVTFFYAIK 71 Query: 154 SGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCHM 212 K + RPDLD L + + D +T + + DDSQ+ L A+KV E + + Sbjct: 72 QK--KRWWQWKTSRPDLDNLMKNLQDYMTKLRYYSDDSQIVWLEAKKVNDEKN---RIEI 126 Query: 213 RIASP 217 I Sbjct: 127 EITEV 131 >UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetobacter pasteurianus RepID=C7JFF8_ACEP3 Length = 151 Score = 86.4 bits (212), Expect = 7e-16, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 28/131 (21%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 R+ +PG +G F + A + I + + + Sbjct: 41 RLTIPGLLRAKGRPRF----------------GNGRTFTYAKTVQAEKHIQRHAIEQI-- 82 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLTD 183 P+ SL + P + T RPD+D + D L Sbjct: 83 ---GKPCLTGPLHVSLMINIAPPPSWSRKKTADALAGRILPTSRPDIDNQMKTAADALNG 139 Query: 184 VVWLDDSQVDD 194 + W DD+Q+ D Sbjct: 140 IAWKDDAQIVD 150 >UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B534_METEA Length = 225 Score = 86.0 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 28/166 (16%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTR-----------------GPAILKESS 110 ++ V +P P+ + + + Sbjct: 53 PEISFAVSLEPRPKERPRTFLPPAELARAFAAAQGNPNRFLSIVRGGDEDTRIRHHTYTP 112 Query: 111 AAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDL 170 + + +A A AM P+ SL P DL Sbjct: 113 KETAAFESAVRMAGAAAMRGRE--------PIAVSLGIDAILAFDGDAGLWPTDNTDGDL 164 Query: 171 DKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 D L +AVLD + VV+ DD V ++ K+ P +R+ Sbjct: 165 DNLVKAVLDAVNGVVFKDDRLVVEMRLAKI---CLPSPAIALRVRP 207 >UniRef50_B5VV93 Endodeoxyribonuclease RusA n=2 Tax=Arthrospira RepID=B5VV93_SPIMA Length = 278 Score = 85.6 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 33/156 (21%), Gaps = 31/156 (19%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + + G P+ WR R + Sbjct: 151 TELISFVIEGAVVPKARPRVTSNG----------------TYLPPRYREWRNRAEVELYR 194 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT---D 183 + L ++ D+D LA A LD LT Sbjct: 195 QISERNLTNKFPLRRAAVTIRLF------------GNHRTNSDIDNLAGACLDALTLQGA 242 Query: 184 VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 V +DD R + G + I + Sbjct: 243 GVLMDDRLSCLPKLRVEFFPDIPKTGVWIDIEPLSY 278 >UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA family protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L7A6_RUMHA Length = 192 Score = 85.6 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 26/155 (16%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPW-RERIALASAD 126 +L P P S + + + P + + + + I L + Sbjct: 3 EKLVFTSPIPP----SVNHYLAYRTIIKN----GKPMAMSYKTKEAKDYQKNIIELIKKE 54 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD--V 184 + +K + F PR D + + + D +TD + Sbjct: 55 VEKQRWVKSDNKFQHYYMDVVFYFPR-------------VDMDANNYFKCLADAITDTEL 101 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 VW+DD+Q+ + + P + I + Sbjct: 102 VWIDDTQLCERVMGIYYDN--KNPRMEIEIKPVNY 134 >UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteriaceae RepID=A4WB46_ENT38 Length = 151 Score = 85.2 bits (209), Expect = 2e-15, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 10/133 (7%) Query: 79 APQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDK 138 P + F F + + P + A W++R + A + + Sbjct: 12 IPPNHRAFPAFPRVVQIMKVYNILPMGKPRMTRADK-WKKRPEVMRYRAFCDHVRLLGVE 70 Query: 139 KYPVRASLTFVMPRPSGTPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVD 193 + +TF++P P K P +PD D L +A++D + + DD+ + Sbjct: 71 LPEANSHVTFILPMPQSWSKKKRLEYNGKPHQGKPDFDNLMKALMDAI----FEDDAHIW 126 Query: 194 DLHARKVLAELSQ 206 D K+ E + Sbjct: 127 DARVTKLWGEEGK 139 >UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MNI2_ANATD Length = 124 Score = 84.9 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 37/150 (24%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++ + KP P+ G + + E I + Sbjct: 1 MAYFKIEIQTKPVPKARPRL---------------GANGRMYTPKETREFEELIGWTTRS 45 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVW 186 + + PV+ ++ R D D +A+A+LDGL+ V + Sbjct: 46 VVR------KPIEKPVKVNIDVYSK--------------TRADFDNIAKAILDGLSGVAF 85 Query: 187 LDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 +DD QV DL RK+ + I Sbjct: 86 IDDRQVVDLRIRKL--TPVNCEKIVISIRE 113 >UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6T7_9BACT Length = 141 Score = 84.9 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 34/166 (20%) Query: 55 ALSARVTYERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVG 114 +L + ++ + + +PG P P + ++ +A Sbjct: 8 SLRKKEVWKIENNKIFEIEIPGLP--------------PTVNHFYRTSRTGVRYKTAEGK 53 Query: 115 PWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLA 174 W+ + L M +A V + T K D+D Sbjct: 54 AWQAGVVLL----MRTANKNYQAYAGEVGLYIDL-----MSTDKRRW-------DVDNRI 97 Query: 175 RAVLDGL-TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 +A+ D L + V +D+QV +LHAR+V + + ++ I Sbjct: 98 KALQDCLASAGVIKNDTQVIELHARRVHGDDEKT---NVMIYKLAE 140 >UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBQ4_9ENTR Length = 124 Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 35/135 (25%), Gaps = 18/135 (13%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 P R S +R A + V + Sbjct: 5 VSLTLPFPPSVNTYWRNLKGKTLISEKGRRYRASAIAAIYQQLPRR---SDAITGIVSVT 61 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAEL 204 + PP R D+D +A D LT +W DD QV HA ++ Sbjct: 62 VKMF------------PPTSHRRDIDNYLKAPFDALTHANIWKDDDQVK--HADIAWCDV 107 Query: 205 SQQPGCHMRIASPGW 219 + + I G Sbjct: 108 VKGGRFEITIRPIGN 122 >UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter formigenes RepID=C3X8S6_OXAFO Length = 222 Score = 84.5 bits (207), Expect = 3e-15, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 46/151 (30%), Gaps = 19/151 (12%) Query: 88 GFKKAPEGSPPGTRG------PAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYP 141 P + R A + S ++ R+ A+ +A + Sbjct: 4 LTLPYPISANRYWRTYLPRGCAAPVTTVSPEARAYQNRVRRAAREA-----GVLCPFPGR 58 Query: 142 VRASLTFVMPRPSGTPKS------YTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDL 195 V S RP + +V+ DLD + + D + +V+ +D+ + + Sbjct: 59 VAVSYVLYPKRPLDWVRRQRMNPARWDDSVQCMDLDNAQKVLFDAMEGIVYENDNLIRRI 118 Query: 196 HARKVLAELSQQPGCHMRIASPGWGDEAIAA 226 + + + + + E +A Sbjct: 119 EGERAVPD--GDARVLVTVEPIEDLVEPVAD 147 >UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease n=3 Tax=Arsenophonus nasoniae RepID=D2U1C7_9ENTR Length = 129 Score = 83.7 bits (205), Expect = 5e-15, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 16/129 (12%) Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 P R + S ++ A + + + V + Sbjct: 9 LPFPPSVNTYWRHNSKHTYLSNKAKAFKATTAKIVNE--MRQKSGCQKFEGEVSVLMQLY 66 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQP 208 +P + D+D ++ VLD LT VW DDSQV + K+ + Sbjct: 67 LP------------NKIKRDVDNYSKGVLDSLTGADVWNDDSQVRVMTIEKIDNNGGVKG 114 Query: 209 G-CHMRIAS 216 G C + I Sbjct: 115 GKCVVAINE 123 >UniRef50_Q119T1 Endodeoxyribonuclease RusA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q119T1_TRIEI Length = 270 Score = 83.3 bits (204), Expect = 7e-15, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 40/159 (25%), Gaps = 31/159 (19%) Query: 63 ERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIAL 122 E + +++PGK P+ + WR + + Sbjct: 140 EYKSSTIINLYIPGKIVPKARPRVTANG----------------TYLPSRYRIWRNQAEV 183 Query: 123 ASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT 182 + L V S++F DLD LA A LD LT Sbjct: 184 EIYRQVSKLNLEVSLPIQRAAISISFC------------GKHRTNSDLDNLAGACLDALT 231 Query: 183 ---DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 V DD ++ G + I Sbjct: 232 LNGAGVLQDDRLSCIPKLNIEYIPHIKKIGVWIEIKILS 270 >UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QRE3_NITHX Length = 112 Score = 82.9 bits (203), Expect = 9e-15, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 22/127 (17%) Query: 91 KAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVM 150 P RG L + A+++ A + PV L Sbjct: 8 GQPVSVNQLYRGRRFLTTDGKRT---KLLNAVSARKQYRGA-----PLEGPVCVELQVYF 59 Query: 151 PRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGC 210 + D+D + +A LD LT ++W DD Q+ +LHA K+ + +P Sbjct: 60 KSKAS------------SDIDNVCKAALDSLTGILWKDDRQIQELHAYKL--QDKLRPRI 105 Query: 211 HMRIASP 217 + ++ Sbjct: 106 ELTLSQL 112 >UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteriaceae RepID=A4W6Z5_ENT38 Length = 119 Score = 82.5 bits (202), Expect = 1e-14, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 10/116 (8%) Query: 96 SPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG 155 P + A W+ R A+ A A +TFVMP P+ Sbjct: 1 MRTYDITPLGKPRMTRADK-WKTRPAVMRYRAFCDEARLRRIHLPESGAHVTFVMPMPTS 59 Query: 156 TPKSYTP-----PAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 K P +PD D + +A++D L + DDS V D K+ E Q Sbjct: 60 WSKKKREQFDGKPHQSKPDCDNMLKALMDAL----FDDDSSVWDCRITKLWGEKGQ 111 >UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Y4_STRSW Length = 161 Score = 82.2 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 62/168 (36%), Gaps = 29/168 (17%) Query: 66 GGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 L + V G PAPQGSK+ L ESSAAV PWRE + A+ Sbjct: 2 TAPALLLTVYGTPAPQGSKN--------------RNRAGALYESSAAVKPWREAVKTAAL 47 Query: 126 DAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT----------PPAVKRPDLDKLAR 175 DA+ PV F + RP + PDLDKL R Sbjct: 48 DAL-HHDDGWTALSCPVWLDAQFTLRRPKHHYGTGRNAGRLKPSAPAYPTGTPDLDKLVR 106 Query: 176 AVLDGLTD-VVWLDDSQVDDLHARKVL---AELSQQPGCHMRIASPGW 219 D L D V DDS V L A KV + + PG +R+ Sbjct: 107 CTQDALKDAGVLADDSVVASLSASKVYVLWGDALRTPGAVIRVWRLND 154 >UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NV05_SODGM Length = 119 Score = 80.2 bits (196), Expect = 5e-14, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 40/137 (29%), Gaps = 20/137 (14%) Query: 83 SKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPV 142 + + P +R + A + + + Sbjct: 1 MRRYHITLPFPPSVNHYWYHAKGRHFIKEKGIQYRRSV-----MAEIMRLRLAVRFSGQI 55 Query: 143 RASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVL 201 R + PP ++ DLD L +A LD L V+ DD+Q+ DLH + Sbjct: 56 RVRVVA------------NPPDRRKRDLDNLLKAPLDALQHAGVYEDDNQIIDLHIIR-- 101 Query: 202 AELSQQPGCHMRIASPG 218 E Q + + Sbjct: 102 GEKVQGGKLDITLTLLE 118 >UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MV65_9FUSO Length = 109 Score = 80.2 bits (196), Expect = 5e-14, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 19/128 (14%) Query: 92 APEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMP 151 P + S + E ++ + Sbjct: 1 MPPSVNTLWVNKHRGRYKSKRGKEFEEIAKYELKKQYKGEVTK-----KRLKVEIWLYFK 55 Query: 152 RPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCH 211 + D+D +A+LD L +V DD +DDL K+ + + Sbjct: 56 ------------TRAKRDIDNYNKAILDSLKGIVIEDDELIDDLAVHKIKG--HGKDKVY 101 Query: 212 MRIASPGW 219 + I G Sbjct: 102 IEILERGN 109 >UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 RepID=C3WYQ9_9FUSO Length = 117 Score = 79.8 bits (195), Expect = 6e-14, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 20/134 (14%) Query: 85 DFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRA 144 F K + + S A +R+ + + V+ Sbjct: 4 RFEIPYKPDSMNTHWRIAKNGGQYLSKAGREFRDNVQNYIKLY------KYKTYEKSVKV 57 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAEL 204 L + DLD + +LD +++DD Q+D + A K + Sbjct: 58 KLDLYFA------------DKRTRDLDNYFKGILDSFKGFLYVDDKQIDKIEATKHIGAG 105 Query: 205 SQQPGCHMRIASPG 218 + + Sbjct: 106 KNY--FIIEVEELQ 117 >UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EUW4_DICNV Length = 125 Score = 79.8 bits (195), Expect = 8e-14, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 14/134 (10%) Query: 84 KDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVR 143 F P R S +R + L + + + DK+ + Sbjct: 4 HTFKALLPMPPSVNHYYRRRGSHVYLSDEARIFRRDVVLKTIGKIPNKKR-WFDKEQRLA 62 Query: 144 ASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLA 202 ++T D+D +A+LD L + V+ +D+Q+DDL + Sbjct: 63 MTVTLYPTNRRSF------------DIDNRLKALLDVLQEIGVYHNDNQIDDLRVVRGAV 110 Query: 203 ELSQQPGCHMRIAS 216 + C + + Sbjct: 111 VKRELGFCVVEVKP 124 >UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7I2_9BACT Length = 132 Score = 79.5 bits (194), Expect = 8e-14, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 20/129 (15%) Query: 88 GFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLT 147 + P + R S +R+ + D +L + Sbjct: 5 LYLPWPPSNNTYYRHVGHRTLLSRKAHAYRKAVLGMLKDRVLPE------FTGEIELYAE 58 Query: 148 FVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAELSQ 206 F PP ++ DLD L + + D L ++ DDSQ+ L K Sbjct: 59 FY------------PPDKRKRDLDNLLKGLQDTLQHAGLFRDDSQIVHLDIVKKEP-HRP 105 Query: 207 QPGCHMRIA 215 ++RI Sbjct: 106 DGRAYVRIK 114 >UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A4110 Length = 107 Score = 78.7 bits (192), Expect = 1e-13, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 36/118 (30%), Gaps = 15/118 (12%) Query: 102 GPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF-VMPRPSGTPKSY 160 AA +++ IA A + L F P Sbjct: 2 TKFGSTYMPAAYKVYQKAIAAAL-------PKLDSQYTGELEVILEFVCKPIAKS----- 49 Query: 161 TPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 D+D A+ V+D LTD W DD Q+ L RK L + P + I Sbjct: 50 -KFTTPMGDVDNFAKGVMDTLTDEGWWEDDRQIMQLAVRKRFPALGEDPHIRIYIREL 106 >UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A3T9_9BACT Length = 151 Score = 77.9 bits (190), Expect = 3e-13, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 15/136 (11%) Query: 93 PEGSPPGTRGPAILKESSAAVGP---WRERIALASADAMLS---AGLPVLDKKYPVRASL 146 P +G I+ + +++ A + P VR L Sbjct: 10 PPNKTAQQKGERIITPKDGSGQYILHYQKASLADIERAYCTLLVTHRPPQPLAGFVRCHL 69 Query: 147 TFVMPRPSGTPKSYTP----PAVKRPDLDKLARAVLDGLTDVVW--LDDSQVDDLHARKV 200 TF P + K + P +PD D A+ D L V + DD+Q+ D K Sbjct: 70 TFTWPWLAKHTKKHRAFGWYPHGGKPDWDNAAKLFCDCLKTVGFFQRDDAQIFDGRLIKG 129 Query: 201 LAELSQQPGCHMRIAS 216 + PG +R++ Sbjct: 130 HGDR---PGIRVRLSE 142 >UniRef50_C2LH12 Endodeoxyribonuclease RusA n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LH12_PROMI Length = 131 Score = 77.5 bits (189), Expect = 3e-13, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%) Query: 115 PWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-----PPAVKRPD 169 W++R + A A LTFV+P P K P +RPD Sbjct: 21 AWKKRPVVVKYHAFCDEMKANRFTLPESGAHLTFVIPMPKSWSKKKRIEMNGKPHQQRPD 80 Query: 170 LDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 +D L +AV+D + + +D +V ++ A K+ E + Sbjct: 81 VDNLIKAVMDAI----FDEDCRVWNISASKLWGEQGK 113 >UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B184_HERA2 Length = 138 Score = 77.2 bits (188), Expect = 5e-13, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 25/143 (17%) Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERI----ALASADAMLSAGLPVLDKKYPVRAS 145 P + S ++ ++ AL +S L + + Sbjct: 7 LPLPPSINSQYVTVGNRRVLSREAQAFKRQVKRQLALLQQRDTISEQFLALAHQGYIALF 66 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELS 205 L F P R DLD + D + + ++D++V D+H K + Sbjct: 67 LDFYFETP------------LRRDLDGGLKITQDSICTSLGINDNRVVDIHLVKRID--P 112 Query: 206 QQPGCHMRIASPGWGDEAIAAWQ 228 P + + A++ WQ Sbjct: 113 LHPRLEVELE-------ALSDWQ 128 >UniRef50_A3MZM1 Predicted Endodeoxyribonuclease RusA n=5 Tax=Pasteurellaceae RepID=A3MZM1_ACTP2 Length = 122 Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 23/135 (17%) Query: 88 GFKKAPEGSPPGTRG-PAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASL 146 P R A S +R ++ V+ + Sbjct: 7 IALPYPPSVNHYWRHTKAGTHYISREGKAFRAKVLNICKQ--------FDPFNGAVKIQI 58 Query: 147 TFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT--DVVWLDDSQVDDLHARKVLAEL 204 P + D D L +A+ D LT ++ D++++ + + E+ Sbjct: 59 YVYYP------------DNRSRDPDNLQKALFDALTASGLIKDDNNKIIKDYRVVGMDEI 106 Query: 205 SQQPGCHMRIASPGW 219 + ++I Sbjct: 107 RKGGMVVIKIKGLDD 121 >UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacterium longum subsp. infantis RepID=B7GQZ5_BIFLI Length = 142 Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 43/144 (29%), Gaps = 33/144 (22%) Query: 79 APQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDK 138 P+G + ER+ Sbjct: 1 MPKGRPRVY----------------NGHAMTPKRTVRAEERLFAEFRLKYPQ----AKPY 40 Query: 139 KYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHAR 198 + PVR F M RPDLD L + VLD L V ++DD+QV + HA Sbjct: 41 QCPVRLEAEFWMS------------HRGRPDLDNLLKLVLDSLNGVAYVDDAQVVESHAC 88 Query: 199 KVLAELSQQPGCHMRIASPGWGDE 222 K + ++ G R GD Sbjct: 89 KRMPDMWVY-GAKGRYRRRKSGDP 111 >UniRef50_A6TU92 Endodeoxyribonuclease RusA n=10 Tax=Clostridiaceae RepID=A6TU92_ALKMQ Length = 141 Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats. Identities = 16/147 (10%), Positives = 37/147 (25%), Gaps = 29/147 (19%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 L+ +PG+P + + G + + IA Sbjct: 2 LKFTIPGRPVSKSNFKLTHKNGQVWMPKSGKH---------SRYVAYENMIAGYINQQYA 52 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVVWLD 188 + L P + DL +++ DG+ + + Sbjct: 53 GPQ-----LTQQLITILRLYFP------------DRRMGDLHNYPKSICDGIEKSGIISN 95 Query: 189 DSQVDDLHARKVLAELSQQPGCHMRIA 215 D Q+ + + + P + + Sbjct: 96 DKQLRPVLLFDFIDS--ENPRVEIELY 120 >UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillus minor NM305 RepID=C5S0Z1_9PAST Length = 114 Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 24/133 (18%) Query: 86 FMGFKKAPEGSPPGTRG-PAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRA 144 + P + +A +++ + + + V Sbjct: 2 VVLELPYPPTVNHYWKHTRNGKHYITAKGKTFQQEVRWLTRN--------RPKFIGKVLL 53 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVVWLDDSQVDDLHARKVLAE 203 + PP ++ D+D + +A+LD L V +DDS V L A K+ + Sbjct: 54 EVDIY------------PPDNRKRDIDNIFKALLDALTNAGVIIDDSFVYKLVAEKLPS- 100 Query: 204 LSQQPGCHMRIAS 216 + +RI Sbjct: 101 -IKGGKVIVRIKE 112 >UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bacteroides vulgatus ATCC 8482 RepID=A6L486_BACV8 Length = 124 Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 34/138 (24%), Gaps = 19/138 (13%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVG---PWRERIALASADAMLSAGLPVLDKKYPVR 143 + + + + +E + + + + R Sbjct: 2 YIIRGQIPSKSNCYKIVSHFDPKTRKTHSSLAKQEVLKEYEKNFYIQCPERGRMIEGYFR 61 Query: 144 ASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDSQVDDLHARKVLA 202 KRPDLD + +LD L +D Q + K + Sbjct: 62 LRAKVYY-------------NSKRPDLDNSLKILLDCLQMTGTIKNDRQCVYIEIEKFVD 108 Query: 203 ELSQQPGCHMRIASPGWG 220 ++P I +G Sbjct: 109 --RKEPRVEYEITPVEFG 124 >UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=129 Tax=Enterobacteriaceae RepID=B2U015_SHIB3 Length = 126 Score = 74.5 bits (181), Expect = 3e-12, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 20/134 (14%) Query: 85 DFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRA 144 P R S A +R +AL L + Sbjct: 4 RIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQ-----RLKLSLSGRLAI 58 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAE 203 + PP +R DLD + +A LD LT + +DD Q D+++ + A+ Sbjct: 59 KIIA------------EPPDKRRRDLDNILKAPLDALTHAGLLMDDEQFDEINIVR--AQ 104 Query: 204 LSQQPGCHMRIASP 217 ++I Sbjct: 105 PVSGGRLGVKIYPI 118 >UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribonuclease n=5 Tax=Enterobacteriaceae RepID=C4X6W2_KLEPN Length = 132 Score = 74.5 bits (181), Expect = 3e-12, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 39/133 (29%), Gaps = 23/133 (17%) Query: 89 FKKAPEGSPPGTRGPAILKES-----SAAVGPWRERIALASADAMLSAGLPVLDKKYPVR 143 P R P S A ++ + A + + + P Sbjct: 4 ILPFPPSVNSYWRSPNKGTAKGKLLVSEAGRKFKHAVRAAIIEQLKAVPK---PSASPAE 60 Query: 144 ASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDSQVDDLHARKVLA 202 + PP +R DLD +A+ D LT +W DDSQV + Sbjct: 61 VVIVLH------------PPDYRRRDLDNYNKALFDALTYAGIWEDDSQVKRMTIE--WG 106 Query: 203 ELSQQPGCHMRIA 215 ++ + I Sbjct: 107 GNAKGGRVEITIT 119 >UniRef50_O52945 Plasmid PLS32 DNA for thymidine kinase, replication protein, complete cds n=3 Tax=Bacillus subtilis RepID=O52945_BACSU Length = 185 Score = 73.3 bits (178), Expect = 7e-12, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 40/151 (26%), Gaps = 24/151 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + LR+ P P R + S ++ D Sbjct: 1 MKSLRLVSPLPP--------SVNNYLSYKVSSNGRRKFVQAYPSEETKIYKSFFTDYVKD 52 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVV 185 M +K V + F + KR D + + D T V Sbjct: 53 QMNEQEWEQPEKGKLVFVKIKFFL-------------DRKRKDPNNFLKVPFDVFTEAGV 99 Query: 186 WLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 +LDD V A +V + SQ P I Sbjct: 100 YLDDD-VALPVAERVYID-SQNPRLEFEIYE 128 >UniRef50_Q2NPB1 Putative HNH family gene n=1 Tax=Xanthomonas phage OP2 RepID=Q2NPB1_9CAUD Length = 134 Score = 72.9 bits (177), Expect = 8e-12, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 43/137 (31%), Gaps = 17/137 (12%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASL 146 P R SAA ++ +A +L G + + Sbjct: 13 RLTLPWPPTLNSIWRAVQGRIVLSAAARDYKRAVA-----KLLPVGKAAAPLTGRLMVWV 67 Query: 147 TFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELS 205 T PS K D+ + ++D LTD +WLDDSQ+D L + A+ Sbjct: 68 TLY--PPSTMGKRKW-------DIANREKIMIDCLTDQRIWLDDSQIDALVLLRGGADGI 118 Query: 206 QQPGCHMRIASPGWGDE 222 I + + Sbjct: 119 --GRAEFTIQTITDDNR 133 >UniRef50_Q9AKY6 Putative uncharacterized protein n=1 Tax=Legionella pneumophila RepID=Q9AKY6_LEGPN Length = 120 Score = 72.9 bits (177), Expect = 9e-12, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 32/125 (25%), Gaps = 19/125 (15%) Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 P + S +R + ++ Sbjct: 8 LPYPPTINHYYKRTPKGLALSTKGIQYRHDAFYLLHKHRNHCK------DKRLAVTINLF 61 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAELSQQP 208 PP +R D+D + + +LD + V+ DD+Q+D L + Sbjct: 62 ------------PPDKRRRDIDNILKCLLDSMQHAGVYDDDNQIDMLTIIRRHVVKDGSV 109 Query: 209 GCHMR 213 + Sbjct: 110 AVWIS 114 >UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=Neisseria gonorrhoeae RepID=D1DX10_NEIGO Length = 178 Score = 72.9 bits (177), Expect = 9e-12, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 40/143 (27%), Gaps = 12/143 (8%) Query: 75 PGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLP 134 P +G + P + R SA +RE + + A Sbjct: 48 PVDATGRGMRVTRLILPYPVSANRYWRIWRNRAVRSAEAAAYRETVRRIAQGA------G 101 Query: 135 VLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDD 194 + + V + P V DLD + LD L V + +D QV Sbjct: 102 AMPSEGAVAVYVRL---IPKANKDGGANKTVI--DLDNALKVTLDALQGVAYHNDRQVRR 156 Query: 195 LHARKVLAELSQQPGCHMRIASP 217 + A E G + + Sbjct: 157 IAAD-YADEPVAGGGLAVEVGEL 178 >UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A959_THEAQ Length = 118 Score = 72.1 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 34/124 (27%), Gaps = 20/124 (16%) Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 P + S W +A + V + Sbjct: 8 LPWPPSINHYWGARGRGRYLSPQARRW-------HKEAWAVLKAQGVRYSGEVAVYVFAH 60 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAELSQQP 208 PP ++ DLD + +A+LD L V DD QV L+ + E + Sbjct: 61 ------------PPDRRKRDLDNITKALLDALVGAGVLKDDHQVAVLYVERRPFERPGKV 108 Query: 209 GCHM 212 + Sbjct: 109 RLVV 112 >UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSA8_SODGM Length = 124 Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 23/132 (17%) Query: 87 MGFKKAPEGSPPGTRGPA-----ILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYP 141 P R P S +R + + K Sbjct: 2 NLSLPFPPSVNGYWRAPNRGKLAGRHLVSERGRRYRAEAVAEILEQLRG---MPQPVKGD 58 Query: 142 VRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDG-LTDVVWLDDSQVDDLHARKV 200 + S+ F PP+ + DLD +A+ D + +W+DDSQ+ L A Sbjct: 59 LAVSVMFC------------PPSRAKRDLDNYFKALFDSVINAGIWIDDSQIKKLEAE-- 104 Query: 201 LAELSQQPGCHM 212 +++ C Sbjct: 105 WGPVTKGGECIF 116 >UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=19 Tax=root RepID=RUSA_BPHK7 Length = 120 Score = 71.8 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 35/131 (26%), Gaps = 20/131 (15%) Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 P R S +R+ + LD R + + Sbjct: 8 LPYPPSLNTYWRRRGSQYYISDKGQKYRKDVQQIIRQ-------LKLDIFTKSRLRIKVI 60 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVW-LDDSQVDDLHARKVLAELSQQP 208 P +R DLD + + +LD L + DD Q DD+ + Sbjct: 61 ADVPDS----------RRRDLDNILKGLLDSLIHAGFAEDDEQFDDIRVIR--GVKVPGG 108 Query: 209 GCHMRIASPGW 219 ++I Sbjct: 109 RLGIKITELES 119 >UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribonuclease n=34 Tax=root RepID=B4TRD0_SALSV Length = 129 Score = 70.6 bits (171), Expect = 4e-11, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 40/144 (27%), Gaps = 23/144 (15%) Query: 88 GFKKAPEGSPPGTRGPA-----ILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPV 142 P R P SAA ++ A + + P Sbjct: 3 LILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSTACAAIVEQLR---RLPKPTSAPA 59 Query: 143 RASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVL 201 + PP + DLD +A+ D LT VW DDSQV + Sbjct: 60 SVEIVLF------------PPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVE--W 105 Query: 202 AELSQQPGCHMRIASPGWGDEAIA 225 + + + I+ A A Sbjct: 106 GPVIPEGKVEITISKYEKTAGAAA 129 >UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacteraceae RepID=B0T4W4_CAUSK Length = 132 Score = 70.2 bits (170), Expect = 5e-11, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 18/131 (13%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASL 146 G ++ + ++ I + + + Sbjct: 9 WTHHGKVRAREDGGELTLVVDGLTTQAKYYKPLIYEFFRKVWRGSRPAWGEFSVEIGME- 67 Query: 147 TFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 FV P DLD LA+A+LD + + DD+QV L + AE Sbjct: 68 -FVGDPPW-------------MDLDNLAKALLDAIKGYAFHDDAQVARLLVERRPAERE- 112 Query: 207 QPGCHMRIASP 217 + + Sbjct: 113 --RIIIVVRKL 121 >UniRef50_O67766 Crossover junction endodeoxyribonuclease rusA n=2 Tax=Aquificaceae RepID=RUSA_AQUAE Length = 126 Score = 70.2 bits (170), Expect = 6e-11, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 46/151 (30%), Gaps = 34/151 (22%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++ +++ P P+ R V W R + Sbjct: 5 MEEIELYLSKLPVPKS--------------NRYIRPKGGKVFKPPRVTNWEARAIWELRE 50 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVV 185 Y + +T ++P ++ D+D + +++ D + V Sbjct: 51 QFKGD-----AIDYEISVDITLILP------------NRRKRDIDNMLKSLWDVMEKAGV 93 Query: 186 WLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 +D+ + ++H K + + G ++I Sbjct: 94 IKNDNLIFEVHTVKKI--EKGKEGVIIKIRP 122 >UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia RepID=B2JL34_BURP8 Length = 164 Score = 69.8 bits (169), Expect = 7e-11, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 47/177 (26%), Gaps = 44/177 (24%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G+PA + + + GT + S + DA+ Sbjct: 2 RVAFTLRGEPASKANSR-EIVARKVRSKTDGTLKTRPMSIKSDKARNFE-------RDAL 53 Query: 129 LSAGLPVL-DKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD---- 183 PVR L A +RPDLD +LD + D Sbjct: 54 KQIPPSARVRMTGPVRVILKIFY-------------ATERPDLD--ESVILDVMQDRFRT 98 Query: 184 --------------VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAA 226 V+ +D QV P + I S A+A Sbjct: 99 VTVKGIERRELVYHGVYRNDRQVRQKFV--FHGIDRVNPRAEVVIESLQEQQLALAL 153 >UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadaceae RepID=Q0AN00_MARMM Length = 112 Score = 69.4 bits (168), Expect = 8e-11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 18/110 (16%) Query: 110 SAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPD 169 + ++ I + + PA D Sbjct: 14 TTQTRRFKSLIGEFFRLEFKRTQPKWGPYEVCIEV---------------ARDPASPDHD 58 Query: 170 LDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 +D +A+AVLD LT VV+ DDSQV+ L +V + P + Sbjct: 59 VDGVAKAVLDALTGVVFHDDSQVERLLVTRVEGDR---PRIAVTARPMQE 105 >UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA superfamily n=1 Tax=Bacillus cereus H3081.97 RepID=B5V5C5_BACCE Length = 135 Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 40/134 (29%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 V G P + ++ + W+ R+ A+ Sbjct: 1 MIPFEFIVEGPPVS------------------------LQTKNRNRLQEWKARVRSAAEL 36 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVW 186 + ++ S+T+ PD+D + + + D L +V+ Sbjct: 37 YWPTED---SPSDKQLKLSITYYYE-------------NTSPDVDNIIKPIQDALVGLVY 80 Query: 187 LDDSQVDDLHARKV 200 DD Q+ D K Sbjct: 81 NDDDQIIDTSCGKR 94 >UniRef50_B8HN12 Endodeoxyribonuclease RusA n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HN12_CYAP4 Length = 130 Score = 67.5 bits (163), Expect = 3e-10, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 38/156 (24%), Gaps = 38/156 (24%) Query: 63 ERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIAL 122 R +++ + + G P+ G W+E Sbjct: 12 IRKSNQEITLHLTGPVTPKARPRHHGN----------------QSYLPGRYRQWKEDAIA 55 Query: 123 ASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL- 181 + +P + R DLD ++ AVLD L Sbjct: 56 ELSQQYEGEPIPQAIVTIEI--------------------LGSARGDLDNISGAVLDALV 95 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 V +DD + G ++I+ Sbjct: 96 QAGVLVDDRISCIPRLEICHV-PGKIQGAKIQISQL 130 >UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XIH3_SYNP2 Length = 135 Score = 67.1 bits (162), Expect = 4e-10, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 40/132 (30%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 +L V G P Q ++ + W+ + + Sbjct: 4 RLEFIVDGPPVSQQTRR------------------------RERLRDWKRVVRQEAEKYW 39 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLD 188 S + +T+ D+D + + + D + +V++D Sbjct: 40 SSGQKAT---TGLIMLQITYFY-------------DSVAIDVDNIVKPIQDAIIGLVYID 83 Query: 189 DSQVDDLHARKV 200 D QV D+ RK Sbjct: 84 DDQVTDVLVRKR 95 >UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ34_9DEIN Length = 120 Score = 66.8 bits (161), Expect = 5e-10, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 31/132 (23%), Gaps = 22/132 (16%) Query: 83 SKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPV 142 + P V WR+ +A S + PV Sbjct: 5 RPACLCLPWPPASGNHQYGRRTRGVYLRREVTAWRDEVAWLSRGH---------KAEVPV 55 Query: 143 RASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVVWLDDSQVDDLHARKVL 201 + PP +R D D + + +LD L V DD R Sbjct: 56 ELRIRLY------------PPDNRRRDADNVLKLLLDALVRAGVIPDDCNRVVRAYRMEW 103 Query: 202 AELSQQPGCHMR 213 + + Sbjct: 104 GQARPGGAIEVE 115 >UniRef50_C8Q091 Holliday junction resolvase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q091_9GAMM Length = 126 Score = 66.8 bits (161), Expect = 6e-10, Method: Composition-based stats. Identities = 15/132 (11%), Positives = 37/132 (28%), Gaps = 18/132 (13%) Query: 89 FKKAPEGSPPGTRG-PAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLT 147 P + + S ++ + + A+ P + L Sbjct: 11 TMPVPPSVNGYLKHDKRGIARLSDEAREYK----MDAYQAI-GRYAPSEPSTKRLALELI 65 Query: 148 FVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDSQVDDLHARKVLAELSQ 206 + + DLD + +LD L + +D Q+D++ ++ E+ Sbjct: 66 IHF---------GSKAIDAKRDLDNCQKLILDALEYARFFNNDQQLDEIVCKR--GEVIN 114 Query: 207 QPGCHMRIASPG 218 + + Sbjct: 115 GGLIEVTLCEIE 126 >UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693C21 Length = 124 Score = 66.4 bits (160), Expect = 7e-10, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 36/127 (28%), Gaps = 25/127 (19%) Query: 95 GSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPS 154 +G ++ S W E + ++D G V L F P Sbjct: 16 MYRNAYKGKRAVRVLSQEAREWYEETVILASDWRKKNG--WQTAGGKVIVRLWFYFP--- 70 Query: 155 GTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDS-----QVDDLHARKVLAELSQQPG 209 +R D + +LD L D + DD QV D ++P Sbjct: 71 ---------DRRRRDTHNGLKILLDALEDARFYDDDKHALPQVMD------YGIDRERPR 115 Query: 210 CHMRIAS 216 + + Sbjct: 116 VEIELER 122 >UniRef50_C5VNX0 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VNX0_CLOBO Length = 209 Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 34/150 (22%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGP----WRERIALASAD 126 ++ V G P + + T+G AIL +S + E IA + Sbjct: 7 KVIVHGSPITKSN-----------FKLSNTKGRAILPYNSGKYHDRYGVYEELIAYEARL 55 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVV 185 P + + A L PD + +++ DG+ + Sbjct: 56 Q-----NPNIFFTESLIAILKVYYKSQKRH-----------PDTTNIPKSIFDGIEKSGL 99 Query: 186 WLDDSQVDDLHARKVLAELSQQPGCHMRIA 215 ++D+Q+ L + + P + + Sbjct: 100 IINDAQIRHLIIEEHYDS--KNPRFELELY 127 >UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria RepID=Q0BY13_HYPNA Length = 118 Score = 63.3 bits (152), Expect = 6e-09, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 31/115 (26%), Gaps = 18/115 (15%) Query: 105 ILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA 164 + ++ + D + P Sbjct: 22 TCTGLTTQTKYYKTLLKEFFRKDFPRLRPGYGDYSVHIVMEHLGDAPW------------ 69 Query: 165 VKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 DLD LA+A+LD L V+ DD QV L + AE G M + Sbjct: 70 ---MDLDNLAKALLDSLCGNVFEDDHQVARLLVERRAAERD---GIWMLAEAMEG 118 >UniRef50_B0QX07 Predicted Endodeoxyribonuclease RusA n=1 Tax=Haemophilus parasuis 29755 RepID=B0QX07_HAEPR Length = 134 Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 40/148 (27%), Gaps = 37/148 (25%) Query: 88 GFKKAPEGSPPGTRGPA-ILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASL 146 P R S +RE LA L V + Sbjct: 7 IALPFPPSVNHYWRHTRQGKHYISDKGKRFRELALLAC--------FAELPFDGLVAVDV 58 Query: 147 TFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDS--------------- 190 +P + DLD L + ++D LT + DDS Sbjct: 59 RVYLP------------DRRDRDLDNLWKVIMDSLTHAKILKDDSWKYVVKESIEAVGEV 106 Query: 191 QVDDLHARKVLAELSQQPGCHMRIASPG 218 +V+D + + E+ + ++I Sbjct: 107 RVNDKGEPEFIPEIVKDGRVVVKIKELK 134 >UniRef50_B0V859 Putative Holiday-junction resolvase n=1 Tax=Acinetobacter baumannii AYE RepID=B0V859_ACIBY Length = 168 Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 24/126 (19%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P + S + + P ++ +TF P Sbjct: 66 PPSVNHYWVASGKRRFLSNKARDFHALVRQVV---------PAHKSTARLKLEVTFHFP- 115 Query: 153 PSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVVWLDDSQVDDLHARKVLAELSQQPGCH 211 + D+D +A +D L + +DD Q D+L ++ + + Sbjct: 116 -----------TRQCRDIDNYLKATIDSLVKCGLCVDDEQFDELLVKR--GNVIKGGLIK 162 Query: 212 MRIASP 217 ++++ Sbjct: 163 LKVSEV 168 >UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ91_9FIRM Length = 121 Score = 58.7 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 165 VKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 +PD+D + + D L + +LD+ Q+ K + + Sbjct: 57 NNKPDIDNIMKITADALNGLAYLDNKQIISCTVGKYYSNVQG 98 >UniRef50_B4U8U8 Endodeoxyribonuclease RusA n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U8U8_HYDS0 Length = 150 Score = 56.3 bits (134), Expect = 9e-07, Method: Composition-based stats. Identities = 16/151 (10%), Positives = 39/151 (25%), Gaps = 30/151 (19%) Query: 72 MFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSA 131 +F+ P + R + W + + + + Sbjct: 8 LFISEPPKGKA--------------NRYIRQKGGAVFKPWKISSWETKASWEISLQLK-K 52 Query: 132 GLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVVWLDDS 190 V +P +R D+D + + + D L + V +D+ Sbjct: 53 LKFKEPFSCKVSVEAIIFLP------------DKRRRDIDNMLKTLWDVLEKNDVIKNDN 100 Query: 191 QVDDLHARKVLAELSQQPGCHMRIASPGWGD 221 + +++ K G ++I Sbjct: 101 LIYEINTIKH--VEKGLQGIFIKIKPYEEQT 129 >UniRef50_C8WWQ1 Endodeoxyribonuclease RusA n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WWQ1_ALIAD Length = 131 Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 20/134 (14%) Query: 87 MGFKKAPEGSPPGTRG------PAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKY 140 P R ++ ++ +R A + G + Sbjct: 3 RLILPLPPSVNHAYRTYVHPQTGQRIRVLTSKAQKFRRDAAYLALRWRQETGWTMPQPGT 62 Query: 141 PVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKV 200 V L + P + +R D + +LD L V++ +D L Sbjct: 63 KVVLRLWYFWP------------SRRRMDTHNREKVLLDALEGVLYPEDR--WVLIQEMD 108 Query: 201 LAELSQQPGCHMRI 214 ++P + + Sbjct: 109 FEVDRKRPRLEIEV 122 >UniRef50_A6LQD4 Endodeoxyribonuclease RusA n=34 Tax=Clostridium RepID=A6LQD4_CLOB8 Length = 232 Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 17/146 (11%), Positives = 44/146 (30%), Gaps = 28/146 (19%) Query: 71 RMFVPGKPAPQGSKD-FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ + G P + + +A G + + IAL + + Sbjct: 6 KVIIKGSPITKSNFKLHNLNGRAILPHSSGKYH--------DRYALYEQEIALLARNQ-- 55 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL-TDVVWLD 188 P + + A L PD + +++ DG+ + ++ Sbjct: 56 ---NPDIVFSESLIALLRVYYKSEKRH-----------PDTINITKSIFDGIEKSGLIIN 101 Query: 189 DSQVDDLHARKVLAELSQQPGCHMRI 214 D+Q+ + + + P + + Sbjct: 102 DAQITKIFTEEYYD--KENPRFELEL 125 >UniRef50_C4K4W1 Endonuclease RUS n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4W1_HAMD5 Length = 91 Score = 53.7 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 16/105 (15%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASL 146 P A S A ++ A+ A + + G V + Sbjct: 2 RIELPFPPSVNHYWVRTARRVYLSEAAKRFQRLTAIEVAKSSMKQGHRSFPGDVSVALT- 60 Query: 147 TFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDS 190 P + D+D + VLD LT +W DD+ Sbjct: 61 --------------HLPDKRVRDVDNYPKGVLDALTKAGIWSDDA 91 >UniRef50_Q6UJ09 Gp23 n=4 Tax=unclassified Myoviridae RepID=Q6UJ09_9CAUD Length = 131 Score = 53.3 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 33/136 (24%), Gaps = 17/136 (12%) Query: 85 DFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRA 144 + P R A S A + + A +R Sbjct: 5 RYSLILPFPPSLNRAYRAVAGRVVLSKAARQYGVAVRNAL------PVGRAERIAGRLRV 58 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDSQVDDLHARKVLA- 202 +T P+ D+ + + D LT W DDSQ+D + Sbjct: 59 VVTVH--PPARLVGRAW-------DVANREKLLSDALTKAGFWRDDSQIDSFRVDRGEFL 109 Query: 203 ELSQQPGCHMRIASPG 218 E + + Sbjct: 110 ETRPAGCAVVDVEVLA 125 >UniRef50_UPI00016C6946 putative endonuclease n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C6946 Length = 115 Score = 53.3 bits (126), Expect = 8e-06, Method: Composition-based stats. Identities = 9/106 (8%), Positives = 32/106 (30%), Gaps = 15/106 (14%) Query: 112 AVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLD 171 + E ++ +S A+ ++ + + P + D+ Sbjct: 9 KFREYEELVSWSSVKAISTSKYKNNKFNENLTTVIKLYFP------------DKRNRDIH 56 Query: 172 KLARAVLDGL-TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 +++ DG+ + +D + + + + P + + Sbjct: 57 NYPKSICDGIEKSGIIKNDKLLKPVVIMDFID--KENPRVEIELYP 100 >UniRef50_A1HR43 Endodeoxyribonuclease RusA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR43_9FIRM Length = 124 Score = 52.9 bits (125), Expect = 9e-06, Method: Composition-based stats. Identities = 17/133 (12%), Positives = 34/133 (25%), Gaps = 16/133 (12%) Query: 88 GFKKAPEGSPPGTRGPAILKE-SSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASL 146 R +I + + W+E+ + A G K+ + Sbjct: 6 LTLPIVPSVNHCYRNVSIHRRVLTPIGKAWQEKAQYIAKAAAAKQGWR-FSKRQKLVMEY 64 Query: 147 TFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 P + D+ + +LD L +++ +D V A Sbjct: 65 WTYWP------------DYRTRDVHNQEKLLLDTLEGILYDNDKWVLPRAMD--FAVDKV 110 Query: 207 QPGCHMRIASPGW 219 P + I Sbjct: 111 NPRIEILIYPLEG 123 >UniRef50_B3SZS6 Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_48F7 RepID=B3SZS6_9ZZZZ Length = 119 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 13/71 (18%) Query: 158 KSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 K P +PDLD + + +D L DD+ V + A K +E QPG + + Sbjct: 57 KHVGKPCQSKPDLDNVLKGFMDALRT----DDASVYAVSASKFWSE---QPGVVLSVR-- 107 Query: 218 GWGDEAIAAWQ 228 AW+ Sbjct: 108 ----VPAPAWR 114 >UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomonas palustris RepID=Q07I62_RHOP5 Length = 138 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 15/87 (17%) Query: 116 WRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLAR 175 W+ +I AS + + + + A+L F P D+D + + Sbjct: 29 WKSKIVDASREVIPEGH---FATEARIAATL-FYFP-----------ATEMAGDIDNIVK 73 Query: 176 AVLDGLTDVVWLDDSQVDDLHARKVLA 202 +LD L ++ DD QV L +K Sbjct: 74 PILDALGRHIYRDDKQVYRLVVQKFEP 100 >UniRef50_C0QUS6 Crossover junction endodeoxyribonuclease RusA (Hollidayjunction nuclease rusA) (Holliday junction resolvase) n=1 Tax=Persephonella marina EX-H1 RepID=C0QUS6_PERMH Length = 148 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 20/136 (14%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPW--RERIALASADAM--LSAGLPVLDKKYPVRA 144 F S + S + + + ++L A+ L K PV Sbjct: 5 FLSFIPPSKANRVKINLRAF-SKSGKRYIVPKDVSLKINRAIWELQKQSSGEPLKDPVEI 63 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDSQVDDLHARKVLAE 203 + F++P +R DLD + + + D L + DD+ + K + Sbjct: 64 KIDFILP------------DRRRRDLDNIMKTLGDCLVYAGIIEDDNLIFKQTLEKHI-- 109 Query: 204 LSQQPGCHMRIASPGW 219 + + G +R+ Sbjct: 110 IKGKEGVIIRLKKYNE 125 >UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLE3_MOOTA Length = 98 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 169 DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 DLD +++ D L + WLDD QV + KV+ + + +A Sbjct: 47 DLDNYIKSLADSLNGIAWLDDRQVARMEVEKVVVVEGDE-RAEVEVAP 93 >UniRef50_B7KYT0 Endodeoxyribonuclease RusA n=2 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KYT0_METC4 Length = 187 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 43/156 (27%), Gaps = 23/156 (14%) Query: 84 KDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVR 143 P + A + + WR++ AL Sbjct: 33 PSVEIRFPLPPSTNSLYFNVAGGRRKTPRYRAWRQQAALLIDVQRPGRMAGPC------- 85 Query: 144 ASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLD-GLTDVVWLDDSQVDDLHARKVLA 202 +T +P SG D D + LD + V DD Q A + Sbjct: 86 -DVTIYLPPFSG-------------DADNRIKPCLDAAVAAGVLADDGQRYVRRALVEVD 131 Query: 203 ELSQQPGCHMRIASPGWGDEAIAAWQAANG-GAAHV 237 + + + + S D A ++ G AAH+ Sbjct: 132 RAATEVRMVLTMPSVEEQDRAEIEVRSREGQSAAHI 167 >UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSR8_9PROT Length = 91 Score = 51.0 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 14/104 (13%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASL 146 + G ++ + ++ ++ M V P A + Sbjct: 2 SSGRGRVRIKVQGQDALILIDGVTTQTRALKKIVSA----HMRRQVAFVRPAFGPFEARI 57 Query: 147 TFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDS 190 + D+D +A+AVLD L+ +W DD Sbjct: 58 W------TSVLAETRGHH----DVDNIAKAVLDSLSGHIWRDDR 91 >UniRef50_C9KYW6 Crossover junction endodeoxyribonuclease RusA family protein n=2 Tax=Bacteroides RepID=C9KYW6_9BACE Length = 147 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 41/160 (25%), Gaps = 32/160 (20%) Query: 73 FVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAG 132 + G+ + + +A G R + + + L Sbjct: 5 IIYGQVIAKAN-----NYQAVPGKDGQKRIIKN-----DRIREYEKSFCLQCKKYRGKR- 53 Query: 133 LPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQ 191 + + R DLD + +LD L V +DS Sbjct: 54 -----ISGRFKLFIRVW-------------HGNIRFDLDNALKTILDCLQMVEAITNDSL 95 Query: 192 VDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAAWQAAN 231 ++HA K + + P + + +A+ Sbjct: 96 CFEIHAEKRID--RRNPRVEFGMEEINEQKNIFSQNKASE 133 >UniRef50_C7RH80 Endodeoxyribonuclease RusA n=1 Tax=Anaerococcus prevotii DSM 20548 RepID=C7RH80_ANAPD Length = 125 Score = 50.2 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 38/154 (24%), Gaps = 33/154 (21%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESS--AAVGPWRERIALASADA 127 +++ + G PA + +++ Sbjct: 1 MKLVLYGNPATK--------------KNSMQIFKNPRTGQPFLTQSKRYKDYARDCGRQI 46 Query: 128 MLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVW 186 G + YP+ + R DL L A D L+D V Sbjct: 47 ---TGKYKKNIDYPINLKCVYYRKTK------------HRVDLTNLLAATCDILSDCGVI 91 Query: 187 LDDS-QVDDLHARKVLAELSQQPGCHMRIASPGW 219 DD+ ++ H + + P + I Sbjct: 92 KDDNCKIVVSHDGSRVKYDKECPRVEIEIEKMNE 125 >UniRef50_B5ZX46 Endodeoxyribonuclease RusA n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2304 RepID=B5ZX46_RHILW Length = 119 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 21/136 (15%) Query: 83 SKDFMGFKKAPEGSPPGTRG-PAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYP 141 K F P R + +A W A + ++ + Sbjct: 1 MKSFSAILPFPPSVNNLFRNIARGGRVKTAKYCAWE-------KQADAAMPSGIVKLQGE 53 Query: 142 VRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKV 200 V A P +R D+ +AV D L V DD Q+ D+ R Sbjct: 54 VIAVYVL------------GRPDRRRRDIANTEKAVGDTLVRWGVLEDDCQIVDIRLRWG 101 Query: 201 LAELSQQPGCHMRIAS 216 A+ + C + + Sbjct: 102 RADEIKPGECRVELVE 117 >UniRef50_C4GFT5 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GFT5_9NEIS Length = 145 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 163 PAVKRPDLDKLA---RAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRI 214 P ++ DLD L + LDG+ + +DD+Q L KV AE + + + Sbjct: 84 PDARKRDLDNLLAAMKPALDGMAKAIGVDDAQFRPLLIDKVKAESRKDARVEIEL 138 >UniRef50_A7JUB5 Possible endodeoxyribonuclease n=2 Tax=Mannheimia haemolytica RepID=A7JUB5_PASHA Length = 119 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 31/133 (23%), Gaps = 22/133 (16%) Query: 86 FMGFKKAPEGSPPGTRGP-AILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRA 144 P R + ++ LA+ + V Sbjct: 2 VELVLPYPPSVNDYWRWVSKTRRVVCKRGKDYQWATFLAAQN--------KPKFGGQVEI 53 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDSQVDDLHARKVLAE 203 P + DLD L + +LD L V +DDS+ Sbjct: 54 KCDVYFP------------DNRDRDLDNLGKCILDSLVYSKVIVDDSRHYVKKLTFEDKG 101 Query: 204 LSQQPGCHMRIAS 216 + +RI Sbjct: 102 NQKGGAVIVRIKE 114 >UniRef50_B9TAJ4 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TAJ4_RICCO Length = 499 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 22/130 (16%) Query: 107 KESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVK 166 + + +R+++A A+ + + ++ M + Sbjct: 1 MYITKSGVDFRKQVAEIVAE-----RSALKFGTSRLFMAVRLCM------------RDRR 43 Query: 167 RPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIA 225 DLD +A+ D L V+ DD Q+D+L + + G Sbjct: 44 ASDLDNRMKALCDALEHAGVFDDDEQIDELVIVRGPIVKGGDSLALVASTEGGSDMTE-- 101 Query: 226 AWQAANGGAA 235 A AA Sbjct: 102 --SEARAIAA 109 >UniRef50_D2U459 Phage V crossover junction endodeoxyribonuclease n=1 Tax=Arsenophonus nasoniae RepID=D2U459_9ENTR Length = 105 Score = 46.7 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 3/63 (4%) Query: 155 GTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLDDSQVDDLHARKVLAELSQQPGCHMR 213 + PP R DLD +A D LT +W DD+QV L Sbjct: 6 SLSLTLFPPTDHRRDLDNFVKAKQDSLTYAGIWQDDAQVKRLTVE--WGAKIAGGSALAI 63 Query: 214 IAS 216 I Sbjct: 64 ITP 66 >UniRef50_A8HP85 Putative uncharacterized protein n=2 Tax=Caudovirales RepID=A8HP85_9CAUD Length = 109 Score = 45.6 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 21/113 (18%) Query: 105 ILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA 164 + + + + L V + ++ SL F + Sbjct: 17 GKRFKTKKYKQYEQECLLLL-------PRKVEIPEGKLKVSLFFGF-------------S 56 Query: 165 VKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 K D D + +D L +D+++ + KV + +I S Sbjct: 57 SKLADADNPVKCFIDILQKKYGFNDNKIYEYSISKV-DVKKGEEFIEFKIESL 108 >UniRef50_C6NYJ0 Endodeoxyribonuclease RusA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYJ0_9GAMM Length = 80 Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 8/80 (10%) Query: 147 TFVMPRPSGTPKSY------TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKV 200 P K ++ DL +A +D L V + DD Q+ + + Sbjct: 1 MLHPVLPKDAEKRRQIWGDYWHLELRCIDLANAEKAAVDALQGVAFEDDKQIVRMVLER- 59 Query: 201 LAELSQQPGCHMRIASPGWG 220 + + + G Sbjct: 60 -GQPVPEGAVFVEWTPFDGG 78 >UniRef50_Q8PFN4 Putative uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. citri RepID=Q8PFN4_XANAC Length = 305 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 10/85 (11%) Query: 139 KYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD--VVWLDDSQVDDLH 196 V L + + + K D+D + + ++D LT + +DDSQ+ +H Sbjct: 65 AGQVNLELLWYL------HATQRQETDKIGDIDNITKPIIDALTGEKGLLIDDSQIGSMH 118 Query: 197 ARKVLAELSQQPGCHMRIASPGWGD 221 + + Q + I + + Sbjct: 119 S--FWNSRNHQTEKDVLILRIKFNN 141 >UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN52_9ACTN Length = 72 Score = 43.6 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 4/60 (6%) Query: 159 SYTPPAVKRPDLDKLARAVLDGLTD-VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 P +PD+ + + D L V DD + D H K A + G + Sbjct: 4 RDGEPHTGKPDMSNMLKTFEDCLVRCSVIDDDRGIIDEHLSKGYA---KTYGIFFKAEEI 60 >UniRef50_D1GPV9 Phage protein n=2 Tax=Staphylococcus RepID=D1GPV9_STAA0 Length = 197 Score = 43.3 bits (100), Expect = 0.008, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 21/126 (16%) Query: 101 RGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKY----PVRASLTFVMPRPSGT 156 K S A RE I + M D +Y + + + R Sbjct: 26 GRFTGKKILSKAGKENREDIMINVERQMSLPVNIDWDYEYTKDHYIYMDIEAYVTR---- 81 Query: 157 PKSYTPPAVKRPDLDKLARAVLDGLT--DVVWLDDSQVDDLHARKVLAELSQQPGCHMRI 214 DLD + + D + +V+ +D +V +V E S P + Sbjct: 82 ---------VNVDLDNTLKTLNDSIEASGLVFDNDKKVV-PRFNRVYIEPS-NPRVELTF 130 Query: 215 ASPGWG 220 GW Sbjct: 131 TQTGWN 136 >UniRef50_B2I3P4 Putative uncharacterized protein n=3 Tax=Acinetobacter RepID=B2I3P4_ACIBC Length = 229 Score = 42.9 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 7/80 (8%) Query: 113 VGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDK 172 +++++ + L +D+ +R + P S R D+D Sbjct: 110 AKKYKDKVQKQYGPMFRALKLKAIDQLCEIRLIVQ---PPLKTRSYSAKTYP--RFDIDN 164 Query: 173 LARAVLDGLT--DVVWLDDS 190 + ++D + +++ DD+ Sbjct: 165 YPKLLIDSVKGDGLLFKDDN 184 >UniRef50_A7VTC7 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A7VTC7_9CLOT Length = 124 Score = 42.9 bits (99), Expect = 0.010, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 5/76 (6%) Query: 147 TFVMPRPSGTPKSYTPPAVKRPDLDKLA---RAVLDGLTD-VVWLDDSQVDDLHARKVLA 202 RP + +R DLD +A + + D + D Q + + Sbjct: 47 KAHFKRPVVM-RYLWVEKDRRRDLDNVAFAKKFIQDAFVHAGILEGDGQRHIVGFTDSFS 105 Query: 203 ELSQQPGCHMRIASPG 218 + P + I Sbjct: 106 VDHKNPRVEIEIEEIS 121 >UniRef50_Q38073 Bacteriophage SPP1 complete nucleotide sequence n=1 Tax=Bacillus phage SPP1 RepID=Q38073_BPSPP Length = 62 Score = 42.5 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 162 PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWG 220 P K D + +LD L V+ +D + D + + P + I+ W Sbjct: 6 PDDGKVRDTHNAKKLLLDALEGVIHENDMWMIDRTIDFHF--VKENPRIEIEISKLWWE 62 >UniRef50_D1E1T5 Phage associated protein n=4 Tax=Neisseria RepID=D1E1T5_NEIGO Length = 61 Score = 42.1 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 1/49 (2%) Query: 178 LDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAA 226 +D L V + +D QV + A E G + + A Sbjct: 1 MDALQGVAYHNDRQVRRIAAE-YGGEPVAGGGLAVEVGELEMEQTDAAD 48 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.123 0.323 Lambda K H 0.267 0.0373 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,060,471,579 Number of Sequences: 3077464 Number of extensions: 35171043 Number of successful extensions: 207677 Number of sequences better than 1.0e-01: 151 Number of HSP's better than 0.1 without gapping: 252 Number of HSP's successfully gapped in prelim test: 156 Number of HSP's that attempted gapping in prelim test: 206774 Number of HSP's gapped (non-prelim): 443 length of query: 237 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 112 effective length of database: 655,713,356 effective search space: 73439895872 effective search space used: 73439895872 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 91 (39.8 bits)