BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (187 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 194 1e-48 UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia... 192 6e-48 UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth... 191 1e-47 UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Strept... 190 2e-47 UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostri... 190 2e-47 UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacte... 189 3e-47 UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 189 4e-47 UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia ... 188 9e-47 UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba... 187 2e-46 UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia... 187 2e-46 UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive... 186 5e-46 UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte... 186 5e-46 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 185 8e-46 UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=... 184 1e-45 UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 184 1e-45 UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili... 183 3e-45 UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero... 182 4e-45 UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhod... 181 1e-44 UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu... 180 3e-44 UniRef50_A0M2M5 Exonuclease family protein n=1 Tax=Gramella fors... 179 3e-44 UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 179 4e-44 UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Coryneb... 178 8e-44 UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermane... 177 1e-43 UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=... 177 2e-43 UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive... 177 2e-43 UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha s... 176 3e-43 UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI... 175 4e-43 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 175 8e-43 UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A... 175 9e-43 UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 174 1e-42 UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 174 1e-42 UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli R... 174 2e-42 UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=... 173 3e-42 UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 173 3e-42 UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit... 173 3e-42 UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 T... 173 3e-42 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 172 4e-42 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 172 4e-42 UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte... 172 4e-42 UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para... 172 5e-42 UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re... 172 5e-42 UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridi... 172 7e-42 UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asti... 172 8e-42 UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida... 171 8e-42 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 171 8e-42 UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrh... 171 1e-41 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 171 1e-41 UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostri... 171 1e-41 UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clost... 170 1e-41 UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Pro... 170 2e-41 UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 170 2e-41 UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot... 170 2e-41 UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gamm... 170 3e-41 UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 169 3e-41 UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 169 4e-41 UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cell... 169 4e-41 UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like do... 169 4e-41 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 168 6e-41 UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Fran... 168 8e-41 UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Beta... 168 9e-41 UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseu... 168 1e-40 UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult... 168 1e-40 UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenib... 167 1e-40 UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG en... 167 1e-40 UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gam... 167 1e-40 UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte... 167 1e-40 UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acid... 167 1e-40 UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit... 167 2e-40 UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholep... 167 2e-40 UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacte... 167 2e-40 UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein... 167 2e-40 UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit... 167 2e-40 UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Deth... 167 2e-40 UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bactero... 167 2e-40 UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu... 167 2e-40 UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 167 2e-40 UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut ... 166 3e-40 UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gam... 166 4e-40 UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit... 166 4e-40 UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polyme... 165 4e-40 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 165 5e-40 UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax... 165 5e-40 UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0... 165 5e-40 UniRef50_Q48KX3 DNA polymerase III, epsilon subunit n=35 Tax=Pro... 165 6e-40 UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alp... 165 7e-40 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 165 7e-40 UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrot... 165 7e-40 UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=A... 165 8e-40 UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostri... 164 1e-39 UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococ... 164 1e-39 UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para... 164 1e-39 UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia ... 164 1e-39 UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Beta... 164 1e-39 UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucl... 164 1e-39 UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi... 164 2e-39 UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc... 164 2e-39 UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostri... 163 2e-39 UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ... 163 3e-39 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 163 3e-39 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 163 3e-39 UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 163 3e-39 UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alterom... 162 4e-39 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 162 4e-39 UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamm... 162 4e-39 UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rick... 162 5e-39 UniRef50_C7G8J4 Putative DNA polymerase III, alpha chain n=1 Tax... 162 5e-39 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 162 6e-39 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 162 6e-39 UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodoth... 162 6e-39 UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum cen... 162 7e-39 UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostr... 162 7e-39 UniRef50_Q2VYH6 DNA polymerase III, epsilon subunit and related ... 162 8e-39 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 161 8e-39 UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid... 161 8e-39 UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostri... 161 8e-39 UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit... 161 9e-39 UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA po... 161 1e-38 UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostri... 161 1e-38 UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidete... 161 1e-38 UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Trepon... 161 1e-38 UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Bur... 161 1e-38 UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit... 161 1e-38 UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy... 160 1e-38 UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-posit... 160 1e-38 UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Pro... 160 2e-38 UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidob... 160 2e-38 UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeu... 160 2e-38 UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Rose... 160 2e-38 UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alph... 160 2e-38 UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Delt... 160 2e-38 UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodo... 160 2e-38 UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria Rep... 160 2e-38 UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti... 160 3e-38 UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flav... 160 3e-38 UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brev... 160 3e-38 UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothio... 159 4e-38 UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2 159 4e-38 UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolb... 159 5e-38 UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida... 159 5e-38 UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacte... 159 5e-38 UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus Re... 159 5e-38 UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neor... 159 5e-38 UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo... 159 6e-38 UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinom... 159 6e-38 UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphi... 158 8e-38 UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Euba... 158 1e-37 UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Acti... 158 1e-37 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 158 1e-37 UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=... 158 1e-37 UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caul... 158 1e-37 UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonel... 157 1e-37 UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=... 157 1e-37 UniRef50_B0UD78 DNA polymerase III, epsilon subunit n=5 Tax=Alph... 157 1e-37 UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dich... 157 2e-37 UniRef50_C0FUI4 Putative uncharacterized protein n=1 Tax=Rosebur... 157 2e-37 UniRef50_Q0EZC1 Probable DNA polymerase III (Epsilon chain) prot... 157 2e-37 UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 157 2e-37 UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysi... 157 2e-37 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 157 2e-37 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 157 2e-37 UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Nei... 157 2e-37 UniRef50_A5IJS5 DNA polymerase III, epsilon subunit n=6 Tax=Ther... 157 2e-37 UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphi... 157 2e-37 UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquif... 157 2e-37 UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anap... 156 3e-37 UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=1... 156 3e-37 UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=... 156 3e-37 UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruege... 156 3e-37 UniRef50_A4CKG8 DNA polymerase III, epsilon subunit n=1 Tax=Robi... 156 3e-37 UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micr... 156 3e-37 UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo... 156 4e-37 UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive... 156 4e-37 UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydroge... 156 4e-37 UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob... 156 4e-37 UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchn... 156 4e-37 UniRef50_C5B532 DNA polymerase III epsilon subunit n=1 Tax=Methy... 155 5e-37 UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ... 155 5e-37 UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robigin... 155 5e-37 UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosm... 155 5e-37 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 155 5e-37 UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chro... 155 6e-37 UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candi... 155 6e-37 UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exon... 155 6e-37 UniRef50_C0QPN1 DNA polymerase III subunit epsilon n=1 Tax=Perse... 155 6e-37 UniRef50_C8RRD8 Exonuclease n=2 Tax=Corynebacterium jeikeium Rep... 155 6e-37 UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 155 7e-37 UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerof... 155 7e-37 UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flav... 155 9e-37 UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 155 9e-37 UniRef50_C6CYA2 DNA polymerase III, epsilon subunit n=2 Tax=Baci... 154 1e-36 UniRef50_B3R0A4 DNA polymerase III alpha subunit n=1 Tax=Candida... 154 1e-36 UniRef50_A9F4T5 DNA polymerase III, epsilon subunit n=1 Tax=Sora... 154 1e-36 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 154 1e-36 UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bact... 154 1e-36 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 154 1e-36 UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flex... 154 2e-36 UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propion... 154 2e-36 UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actin... 154 2e-36 UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lo... 154 2e-36 UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacill... 154 2e-36 UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 154 2e-36 UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 154 2e-36 UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclass... 154 2e-36 UniRef50_Q8D3D2 DnaQ protein n=1 Tax=Wigglesworthia glossinidia ... 154 2e-36 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 154 2e-36 UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1... 153 2e-36 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 153 3e-36 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 153 3e-36 UniRef50_A4SZE6 DNA polymerase III, epsilon subunit n=1 Tax=Poly... 153 3e-36 UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemma... 153 3e-36 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 153 3e-36 UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 153 3e-36 UniRef50_A3V111 Exonuclease, DNA polymerase III, epsilon subunit... 153 3e-36 UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycopla... 153 3e-36 UniRef50_A1KUV1 DNA polymerase III, epsilon chain n=18 Tax=Neiss... 153 3e-36 UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1... 153 3e-36 UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 153 4e-36 UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bact... 152 4e-36 UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capn... 152 4e-36 UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-rel... 152 4e-36 UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51... 152 5e-36 UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokd... 152 5e-36 UniRef50_Q9ZX22 Gp57 n=2 Tax=unclassified Siphoviridae RepID=Q9Z... 152 5e-36 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 152 5e-36 UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio cross... 152 6e-36 UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macroco... 152 7e-36 UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, pu... 152 8e-36 UniRef50_Q3K0L7 Exonuclease, DNA polymerase III, epsilon subunit... 152 8e-36 UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 151 8e-36 UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria ... 151 9e-36 UniRef50_B1VHF1 Putative exonuclease n=1 Tax=Corynebacterium ure... 151 9e-36 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 151 9e-36 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 151 1e-35 UniRef50_A3J795 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 151 1e-35 UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydr... 151 1e-35 UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acid... 151 1e-35 UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplas... 151 1e-35 UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capn... 151 1e-35 UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ... 151 1e-35 UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit... 151 1e-35 UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, e... 150 2e-35 UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinom... 150 2e-35 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 150 2e-35 UniRef50_C1QET6 Exonuclease, DNA polymerase III, epsilon subunit... 150 2e-35 UniRef50_C0GM30 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 150 2e-35 UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrog... 150 2e-35 UniRef50_C0WGE7 Possible exonuclease n=2 Tax=Corynebacterium Rep... 150 2e-35 UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma... 150 3e-35 UniRef50_C9NHS4 DNA polymerase III, epsilon subunit n=2 Tax=Stre... 150 3e-35 UniRef50_B0RTE6 DNA polymerase III epsilon chain n=11 Tax=Proteo... 150 3e-35 UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostri... 149 3e-35 UniRef50_D1B3F1 DNA polymerase III, epsilon subunit n=1 Tax=Sulf... 149 3e-35 UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidob... 149 4e-35 UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 149 4e-35 UniRef50_Q0BM06 DNA-directed DNA polymerase n=20 Tax=Francisella... 149 4e-35 UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helic... 149 4e-35 UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algorip... 149 4e-35 UniRef50_B0TF42 DNA polymerase iii polc-type n=1 Tax=Heliobacter... 149 5e-35 UniRef50_Q3AAH9 Putative DNA polymerase III, epsilon subunit n=1... 149 5e-35 UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiacea... 149 6e-35 UniRef50_C5CEK5 DNA polymerase III, epsilon subunit n=1 Tax=Kosm... 149 6e-35 UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubr... 149 6e-35 UniRef50_UPI0000D530A7 DNA polymerase III subunit epsilon n=1 Ta... 149 7e-35 UniRef50_B5FC60 DNA polymerase III subunit epsilon n=58 Tax=Vibr... 149 7e-35 UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromon... 148 7e-35 UniRef50_B4AHF2 DNA polymerase III PolC-type (PolIII) n=1 Tax=Ba... 148 7e-35 UniRef50_D2L4P4 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 148 7e-35 UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=... 148 8e-35 UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha ... 148 8e-35 UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlam... 148 8e-35 UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atop... 148 9e-35 UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc Re... 148 1e-34 UniRef50_Q315G7 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 148 1e-34 UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam... 148 1e-34 UniRef50_C3RQT5 DNA polymerase III subunit epsilon n=1 Tax=Molli... 148 1e-34 UniRef50_A0PN08 DNA polymerase n=1 Tax=Mycobacterium ulcerans Ag... 148 1e-34 UniRef50_C3XME5 DNA polymerase III subunit epsilon n=1 Tax=Helic... 148 1e-34 UniRef50_A4C086 DNA polymerase III subunit n=2 Tax=Polaribacter ... 148 1e-34 UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clost... 147 1e-34 UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular or... 147 1e-34 UniRef50_C0ECE2 Putative uncharacterized protein n=1 Tax=Clostri... 147 1e-34 UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kord... 147 1e-34 UniRef50_C8SCL6 DNA polymerase III, epsilon subunit n=1 Tax=Ferr... 147 2e-34 UniRef50_Q1V197 DNA polymerase III n=3 Tax=Candidatus Pelagibact... 147 2e-34 UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 147 2e-34 UniRef50_A6CHW6 DNA polymerase III, alpha subunit n=1 Tax=Bacill... 147 2e-34 UniRef50_B4RBF9 DNA polymerase III epsilon chain n=3 Tax=Alphapr... 147 2e-34 UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinob... 147 2e-34 UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=... 147 2e-34 UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Fl... 147 2e-34 UniRef50_Q1NJL0 DNA polymerase III, epsilon subunit n=1 Tax=delt... 147 3e-34 UniRef50_UPI0001B583F7 DNA polymerase III n=2 Tax=Streptomyces R... 146 3e-34 UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=5... 146 3e-34 UniRef50_D2BQ89 DNA polymerase III, epsilon chain n=4 Tax=Lactoc... 146 4e-34 UniRef50_D1WX09 DNA polymerase III, epsilon subunit n=17 Tax=Str... 146 4e-34 UniRef50_D0L0M1 DNA polymerase III, epsilon subunit n=1 Tax=Halo... 146 4e-34 UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xyla... 146 4e-34 UniRef50_A6Q1S7 DNA polymerase III, epsilon subunit n=2 Tax=Epsi... 145 5e-34 UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1... 145 5e-34 UniRef50_D2RB05 CRISPR-associated endoribonuclease Cas2 n=2 Tax=... 145 5e-34 UniRef50_C6WZM7 DNA polymerase III epsilon subunit n=2 Tax=Flavo... 145 5e-34 UniRef50_A6QC85 DNA polymerase III, epsilon subunit n=1 Tax=Sulf... 145 6e-34 UniRef50_Q2SSE0 DNA polymerase III, alpha subunit, Gram-positive... 145 6e-34 UniRef50_Q67M39 DNA polymerase III-like protein n=1 Tax=Symbioba... 145 6e-34 UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus ... 145 7e-34 UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synerg... 145 7e-34 UniRef50_C5VCF0 Exonuclease family protein n=2 Tax=Corynebacteri... 145 7e-34 UniRef50_C4GLS9 Putative uncharacterized protein n=1 Tax=Kingell... 145 8e-34 UniRef50_A5CE47 DNA polymerase III epsilon chain n=2 Tax=Orienti... 145 8e-34 UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuring... 145 1e-33 UniRef50_A8ES54 DNA polymerase III, epsilon subunit n=4 Tax=Epsi... 144 1e-33 UniRef50_A7HHL1 Exonuclease RNase T and DNA polymerase III n=1 T... 144 1e-33 UniRef50_B3RU88 Putative uncharacterized protein n=1 Tax=Trichop... 144 1e-33 UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidob... 144 1e-33 UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex... 144 1e-33 UniRef50_C5EZ00 DNA polymerase III subunit epsilon n=2 Tax=Helic... 144 1e-33 UniRef50_D2PY06 Exonuclease RNase T and DNA polymerase III n=1 T... 144 2e-33 UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotom... 144 2e-33 UniRef50_C6RD51 Mature parasite-infected erythrocyte surface ant... 144 2e-33 UniRef50_B9L0P4 DNA polymerase III epsilon subunit n=1 Tax=Therm... 143 2e-33 UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 fam... 143 2e-33 UniRef50_C3XF27 DNA polymerase III subunit epsilon n=1 Tax=Helic... 143 2e-33 UniRef50_D1NTJ1 DNA polymerase III PolC-type n=1 Tax=Bifidobacte... 143 3e-33 UniRef50_A8ET44 DNA polymerase III n=1 Tax=Arcobacter butzleri R... 143 3e-33 UniRef50_C8X5R2 Exonuclease RNase T and DNA polymerase III n=1 T... 143 3e-33 UniRef50_Q7VGH4 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7... 143 3e-33 UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive... 143 3e-33 UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2... 143 3e-33 UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 143 4e-33 UniRef50_B8R965 Putative DNA polymerase III epsilon subunit (Fra... 142 4e-33 UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge... 142 4e-33 UniRef50_Q2B6U9 Putative uncharacterized protein n=1 Tax=Bacillu... 142 4e-33 UniRef50_B2A7J4 DNA polymerase III, epsilon subunit n=1 Tax=Natr... 142 5e-33 UniRef50_A8LH88 Exonuclease RNase T and DNA polymerase III n=2 T... 142 6e-33 UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_... 142 7e-33 UniRef50_A4X9Y0 DNA polymerase III, epsilon subunit n=6 Tax=Acti... 142 7e-33 UniRef50_Q8EUK5 DNA polymerase III subunit alpha n=1 Tax=Mycopla... 142 7e-33 UniRef50_Q03C57 3'-5' exonuclease and CRISPR-associated protein ... 142 8e-33 UniRef50_A4ASW0 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 141 9e-33 UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 141 1e-32 UniRef50_B1I645 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 141 1e-32 UniRef50_C9RIR1 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 141 1e-32 UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 141 1e-32 UniRef50_A4T616 DNA polymerase III, epsilon subunit n=11 Tax=Myc... 141 1e-32 UniRef50_UPI0001AEDE41 DNA polymerase III n=2 Tax=Streptomyces R... 141 1e-32 UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bac... 141 1e-32 UniRef50_C9XLH5 Putative DNA polymerase III, epsilon chain n=5 T... 140 1e-32 UniRef50_Q3B459 DNA polymerase III, epsilon subunit n=8 Tax=Chlo... 140 1e-32 UniRef50_Q3SKJ9 DNA polymerase III, epsilon subunit n=4 Tax=Prot... 140 2e-32 UniRef50_D2QAZ6 DnaQ DNA polymerase III alpha subunit n=4 Tax=Bi... 140 2e-32 UniRef50_C6IVA0 DNA polymerase III n=1 Tax=Paenibacillus sp. ora... 140 2e-32 UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit... 140 2e-32 UniRef50_A4U2R7 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 140 2e-32 UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alic... 140 2e-32 UniRef50_Q482N7 DNA polymerase III, epsilon subunit n=1 Tax=Colw... 140 2e-32 UniRef50_C7RR73 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 140 2e-32 UniRef50_C8NPX3 DNA polymerase III epsilon subunit n=5 Tax=Coryn... 140 3e-32 UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacte... 139 3e-32 UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase II... 139 3e-32 UniRef50_Q854A2 Gp164 n=1 Tax=Mycobacterium phage Omega RepID=Q8... 139 3e-32 UniRef50_C1XKD8 DNA polymerase III, alpha subunit (Gram-positive... 139 4e-32 UniRef50_D0RQR6 DNA polymerase III PolC-type (PolIII) n=1 Tax=al... 139 4e-32 UniRef50_O29290 DNA polymerase III, subunit epsilon (DnaQ) n=1 T... 139 5e-32 UniRef50_C8P2F2 Gram-positive family DNA polymerase III, alpha c... 139 5e-32 UniRef50_C0Z5S3 Putative uncharacterized protein n=1 Tax=Breviba... 139 7e-32 UniRef50_A7K086 DNA polymerase III epsilon subunit n=22 Tax=Vibr... 138 8e-32 UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1... 138 8e-32 UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Bur... 138 8e-32 UniRef50_Q31RN6 Exonuclease n=2 Tax=Synechococcus elongatus RepI... 138 1e-31 UniRef50_B7V8D9 Probable nuclease n=6 Tax=Pseudomonas aeruginosa... 138 1e-31 UniRef50_Q11G58 DNA polymerase III, epsilon subunit n=1 Tax=Chel... 138 1e-31 UniRef50_D1BFD5 DNA polymerase III epsilon subunit-like 3'-5' ex... 138 1e-31 UniRef50_A1VJH5 Exonuclease, RNase T and DNA polymerase III n=8 ... 137 1e-31 UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachl... 137 1e-31 UniRef50_B9XHY8 DNA-directed DNA polymerase n=1 Tax=bacterium El... 137 1e-31 UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit... 137 2e-31 UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Cam... 137 2e-31 UniRef50_Q1N3V9 Exonuclease n=1 Tax=Bermanella marisrubri RepID=... 137 2e-31 UniRef50_UPI000196B395 hypothetical protein CATMIT_00376 n=1 Tax... 137 2e-31 UniRef50_A6D4K1 DNA polymerase III subunit epsilon n=1 Tax=Vibri... 137 2e-31 UniRef50_C4XRC4 DNA polymerase III epsilon subunit n=1 Tax=Desul... 137 2e-31 UniRef50_B8HW82 UvrD/REP helicase n=1 Tax=Cyanothece sp. PCC 742... 137 2e-31 UniRef50_C6UMV7 Putative DNA polymerase III, epsilon subunit n=1... 137 2e-31 UniRef50_Q6NGF2 Putative DNA polymerase III epsilon subunit n=1 ... 137 2e-31 UniRef50_B6JP45 DNA polymerase III epsilon subunit n=17 Tax=Heli... 137 2e-31 UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface ant... 137 2e-31 UniRef50_Q04EX4 3'-5' exonuclease domain and Rad3-related DNA he... 137 2e-31 UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia i... 137 2e-31 UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ... 137 2e-31 UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla... 137 3e-31 UniRef50_Q6MIB4 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 136 3e-31 UniRef50_A9BFB1 DNA polymerase III, epsilon subunit n=1 Tax=Petr... 136 3e-31 UniRef50_A3ZH56 DNA polymerase III n=1 Tax=Campylobacter jejuni ... 136 4e-31 UniRef50_C3RPR6 3'-5' exonuclease n=2 Tax=Bacteria RepID=C3RPR6_... 136 4e-31 UniRef50_C4DV08 DNA polymerase III epsilon subunit-like 3'-5' ex... 136 4e-31 UniRef50_Q15SW9 Exonuclease, RNase T and DNA polymerase III n=1 ... 136 5e-31 UniRef50_C0XS38 DNA polymerase III epsilon subunit n=1 Tax=Coryn... 135 5e-31 UniRef50_C6NVW4 DNA polymerase III epsilon subunit n=1 Tax=Acidi... 135 5e-31 UniRef50_Q0SVV0 Helicase/exonuclease n=12 Tax=Clostridium RepID=... 135 5e-31 UniRef50_A5CX11 DNA polymerase III epsilon subunit n=2 Tax=sulfu... 135 5e-31 UniRef50_A8VVX5 DNA polymerase III alpha subunit (Gram-positive ... 135 6e-31 UniRef50_P96171 DNA for Na+/glucose symporter, n=1 Tax=Vibrio pa... 135 6e-31 UniRef50_A1SNC5 Exonuclease, RNase T and DNA polymerase III n=1 ... 135 6e-31 UniRef50_A8F6Z7 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 135 6e-31 UniRef50_C4VNH6 DNA polymerase III n=4 Tax=Lactobacillus jenseni... 135 7e-31 UniRef50_A6GRM1 DNA polymerase III subunit epsilon n=1 Tax=Limno... 135 8e-31 UniRef50_B8EEZ7 DNA polymerase III, epsilon subunit n=2 Tax=Shew... 135 8e-31 UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lact... 135 1e-30 UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae ... 135 1e-30 UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 T... 135 1e-30 UniRef50_Q9K697 BH3832 protein n=4 Tax=Bacillus RepID=Q9K697_BACHD 134 1e-30 UniRef50_B1GYV2 DNA polymerase III epsilon subunit n=1 Tax=uncul... 134 1e-30 UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd... 134 1e-30 UniRef50_Q1QZ77 Exonuclease n=1 Tax=Chromohalobacter salexigens ... 134 2e-30 UniRef50_A8TQX4 DNA polymerase III, epsilon subunit n=1 Tax=alph... 134 2e-30 UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 134 2e-30 UniRef50_B1I518 DNA-directed DNA polymerase n=1 Tax=Candidatus D... 134 2e-30 UniRef50_C5VD41 DNA polymerase III epsilon subunit n=2 Tax=Coryn... 134 2e-30 UniRef50_A3Y5Y0 Exonuclease n=1 Tax=Marinomonas sp. MED121 RepID... 134 2e-30 UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class... 133 2e-30 UniRef50_A6WGD9 DNA polymerase III, epsilon subunit n=1 Tax=Kine... 133 2e-30 UniRef50_C6SPJ4 DNA polymerase III alpha subunit n=1 Tax=Strepto... 133 3e-30 UniRef50_B9ZJP8 Exonuclease RNase T and DNA polymerase III n=1 T... 133 3e-30 UniRef50_B9L5N4 DNA polymerase III PolC-type n=1 Tax=Nautilia pr... 133 3e-30 UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseu... 133 4e-30 UniRef50_A7GZ66 Nickel transport permease component NikD n=5 Tax... 132 4e-30 UniRef50_C9KN36 Helicase, UvrD/REP/exonuclease family protein n=... 132 5e-30 UniRef50_C4XFQ7 Putative uncharacterized protein n=1 Tax=Mycopla... 132 5e-30 UniRef50_Q3SMK3 Exonuclease n=1 Tax=Thiobacillus denitrificans A... 132 5e-30 UniRef50_B2KEE3 DNA polymerase III, epsilon subunit n=1 Tax=Elus... 132 5e-30 UniRef50_C2BJB2 DNA polymerase III subunit epsilon n=1 Tax=Coryn... 132 6e-30 UniRef50_Q1JYJ5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 132 6e-30 UniRef50_A7I1F1 DNA polymerase III subunit epsilon n=1 Tax=Campy... 132 6e-30 UniRef50_O67875 Putative uncharacterized protein n=1 Tax=Aquifex... 132 6e-30 UniRef50_C2H7V1 Possible DNA polymerase III subunit epsilon n=5 ... 132 7e-30 UniRef50_C6P477 DNA polymerase III, epsilon subunit n=1 Tax=Side... 132 7e-30 UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB5... 132 7e-30 UniRef50_B5YGW1 DNA polymerase III PolC-type, putative n=1 Tax=T... 132 8e-30 UniRef50_C2D7T6 3'-5' exonuclease and CRISPR-associated Cas2 fam... 132 8e-30 UniRef50_Q9K6I8 BH3741 protein n=1 Tax=Bacillus halodurans RepID... 132 8e-30 UniRef50_C9Z7X4 Putative exonuclease n=1 Tax=Streptomyces scabie... 132 8e-30 UniRef50_D0WQJ6 Exonuclease, DNA polymerase III, epsilon subunit... 132 9e-30 UniRef50_B0UN90 Exonuclease RNase T and DNA polymerase III n=3 T... 131 1e-29 UniRef50_A3HVK4 DNA polymerase III, epsilon subunit n=1 Tax=Algo... 131 1e-29 UniRef50_A5UUT9 DNA polymerase III, epsilon subunit n=4 Tax=Chlo... 131 1e-29 UniRef50_B5YGV6 DNA polymerase III alpha subunit n=1 Tax=Thermod... 131 1e-29 UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DS... 131 1e-29 UniRef50_B7GKX3 Exonuclease n=2 Tax=Bacillaceae RepID=B7GKX3_ANOFW 131 1e-29 UniRef50_B8G6F9 DNA polymerase III, epsilon subunit n=3 Tax=Chlo... 131 1e-29 UniRef50_D0IFC0 DNA polymerase III epsilon subunit n=1 Tax=Vibri... 130 2e-29 UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Coryn... 130 2e-29 UniRef50_B6FWT9 Putative uncharacterized protein n=1 Tax=Clostri... 130 2e-29 UniRef50_D2EP63 DNA polymerase III, epsilon subunit/ATP-dependen... 130 2e-29 UniRef50_A9AZA6 DNA polymerase III, epsilon subunit n=1 Tax=Herp... 130 2e-29 UniRef50_A9FIM8 Exonuclease n=1 Tax=Sorangium cellulosum 'So ce ... 130 2e-29 UniRef50_P47729 DNA polymerase III polC-type n=1 Tax=Mycoplasma ... 130 2e-29 UniRef50_C9RIV2 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 130 2e-29 UniRef50_Q30Q47 Exonuclease n=1 Tax=Sulfurimonas denitrificans D... 130 3e-29 UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins... 130 3e-29 UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphyloco... 130 3e-29 UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 T... 130 3e-29 UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop... 129 4e-29 UniRef50_C9R9F3 DNA-directed DNA polymerase n=1 Tax=Ammonifex de... 129 4e-29 UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase... 129 4e-29 UniRef50_Q2BJ82 DNA polymerase III subunit epsilon n=1 Tax=Neptu... 129 5e-29 UniRef50_A9HX18 Putative exonuclease n=1 Tax=Bordetella petrii D... 129 5e-29 UniRef50_A8VW12 S-adenosylmethionine decarboxylase related n=1 T... 129 5e-29 UniRef50_D0Z0S6 DNA polymerase III epsilon subunit n=1 Tax=Photo... 129 5e-29 UniRef50_B4WXR6 Exonuclease superfamily n=1 Tax=Alcanivorax sp. ... 129 5e-29 UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactoba... 129 6e-29 UniRef50_C5F3P4 DNA polymerase III n=1 Tax=Lactobacillus paracas... 129 6e-29 UniRef50_A6DK72 DNA polymerase III n=1 Tax=Lentisphaera araneosa... 129 6e-29 UniRef50_B3XRZ2 DNA polymerase III, epsilon subunit n=1 Tax=Lact... 129 6e-29 UniRef50_C9PT90 Putative uncharacterized protein n=1 Tax=Prevote... 129 7e-29 UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma ... 128 8e-29 UniRef50_B6BKX7 Exonuclease n=1 Tax=Campylobacterales bacterium ... 128 9e-29 UniRef50_Q05FQ3 DNA polymerase III epsilon subunit n=1 Tax=Candi... 128 9e-29 UniRef50_A3QFI6 Exonuclease, RNase T and DNA polymerase III n=5 ... 128 9e-29 UniRef50_C8P6J0 Putative uncharacterized protein n=1 Tax=Lactoba... 128 1e-28 UniRef50_C9ZG17 Putative DNA polymerase III, epsilon chain (EC 2... 128 1e-28 UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobac... 128 1e-28 UniRef50_A0L6G9 Exonuclease, RNase T and DNA polymerase III n=1 ... 127 1e-28 UniRef50_B2Q2X9 Putative uncharacterized protein n=1 Tax=Provide... 127 2e-28 UniRef50_Q4A745 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 127 2e-28 UniRef50_Q89MS5 Blr4117 protein n=1 Tax=Bradyrhizobium japonicum... 127 2e-28 UniRef50_A9NGM6 DNA polymerase III, epsilon subunit n=1 Tax=Acho... 127 2e-28 UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Strep... 127 2e-28 UniRef50_D0B757 DNA polymerase III n=38 Tax=Brucellaceae RepID=D... 127 2e-28 UniRef50_Q2KXB5 Putative exonuclease n=4 Tax=Bordetella RepID=Q2... 127 2e-28 UniRef50_C5SA67 Exonuclease RNase T and DNA polymerase III n=1 T... 127 2e-28 UniRef50_A1S5S6 DNA polymerase III epsilon subunit-related 3'-5'... 127 2e-28 UniRef50_A6DBG1 DNA polymerase III subunit epsilon n=1 Tax=Camin... 127 2e-28 UniRef50_Q041D1 DNA polymerase III, alpha subunit (Gram-positive... 127 2e-28 UniRef50_A1TZ29 DNA polymerase III, epsilon subunit n=3 Tax=Mari... 127 3e-28 UniRef50_A0Y5B9 DNA polymerase III subunit epsilon n=1 Tax=Alter... 127 3e-28 UniRef50_B6XU67 Putative uncharacterized protein n=2 Tax=Bifidob... 127 3e-28 UniRef50_B6IRC5 3'-5' exonuclease n=2 Tax=Alphaproteobacteria Re... 126 3e-28 UniRef50_B7A7M2 DNA-directed DNA polymerase n=3 Tax=Thermus RepI... 126 3e-28 UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collins... 126 3e-28 UniRef50_B0ADG9 Putative uncharacterized protein n=1 Tax=Clostri... 126 4e-28 UniRef50_D1J1T2 Whole genome shotgun sequence of line PN40024, s... 126 4e-28 UniRef50_B5XKK7 DNA polymerase III, epsilon subunit/ATP-dependen... 126 4e-28 UniRef50_C2JRY7 DNA polymerase III, epsilon subunit n=3 Tax=Ente... 126 4e-28 UniRef50_Q2SPW2 Putative exonuclease n=2 Tax=Hahella chejuensis ... 126 5e-28 UniRef50_C1YLW5 DNA polymerase III epsilon subunit-like 3'-5' ex... 126 5e-28 UniRef50_D0L8D9 Exonuclease RNase T and DNA polymerase III n=2 T... 125 5e-28 UniRef50_C8NL81 DNA polymerase III, epsilon subunit n=7 Tax=Cory... 125 5e-28 UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atop... 125 6e-28 UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1... 125 7e-28 UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Dein... 125 8e-28 UniRef50_D0RQQ0 DNA polymerase III, epsilon subunit n=1 Tax=alph... 125 8e-28 UniRef50_B0G161 DNA polymerase III, epsilon subunit n=1 Tax=Dict... 125 9e-28 UniRef50_D2ATQ8 DNA polymerase III epsilon subunit and related 3... 125 1e-27 UniRef50_A5FFY1 Exonuclease, RNase T and DNA polymerase III n=1 ... 125 1e-27 UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 ... 125 1e-27 UniRef50_B4WSD0 Exonuclease family n=1 Tax=Synechococcus sp. PCC... 125 1e-27 UniRef50_Q47ME2 Exonuclease n=1 Tax=Thermobifida fusca YX RepID=... 124 1e-27 UniRef50_A3Q8X5 Exonuclease, RNase T and DNA polymerase III n=6 ... 124 1e-27 UniRef50_A4U4S6 DNA polymerase III epsilon chain-like protein n=... 124 1e-27 UniRef50_B0PH29 Putative uncharacterized protein n=1 Tax=Anaerot... 124 1e-27 UniRef50_Q4K5K3 Exonuclease n=3 Tax=Gammaproteobacteria RepID=Q4... 124 1e-27 UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Strepto... 124 2e-27 UniRef50_Q31GK8 Exonuclease n=8 Tax=Bacteria RepID=Q31GK8_THICR 124 2e-27 UniRef50_D0I9Y6 DNA polymerase III epsilon subunit n=1 Tax=Grimo... 124 2e-27 UniRef50_Q1QDN3 Exonuclease n=3 Tax=Psychrobacter RepID=Q1QDN3_P... 124 2e-27 UniRef50_B5JQE7 Exonuclease, DNA polymerase III, epsilon subunit... 124 2e-27 UniRef50_D1W6A9 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1W6A... 123 2e-27 UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus... 123 2e-27 UniRef50_Q1MYK1 DNA polymerase III subunit epsilon n=2 Tax=Gamma... 123 2e-27 UniRef50_Q6Q234 Putative uncharacterized protein n=1 Tax=uncultu... 123 2e-27 UniRef50_C0N4N3 Exonuclease superfamily n=1 Tax=Methylophaga thi... 123 2e-27 UniRef50_Q47S15 Exonuclease n=3 Tax=Nocardiopsaceae RepID=Q47S15... 123 3e-27 UniRef50_C6HVS0 DNA polymerase III, epsilon subunit n=1 Tax=Lept... 123 3e-27 UniRef50_A1SRL7 Exonuclease, RNase T and DNA polymerase III n=1 ... 123 3e-27 UniRef50_A3UR50 DNA polymerase III, epsilon chain n=6 Tax=Vibrio... 123 4e-27 UniRef50_UPI000185C08E DNA polymerase III epsilon subunit n=1 Ta... 122 4e-27 UniRef50_Q47TJ3 DNA polymerase III, epsilon subunit n=10 Tax=Act... 122 5e-27 UniRef50_A1TXA3 Exonuclease, RNase T and DNA polymerase III n=8 ... 122 5e-27 UniRef50_A0KJY7 DNA polymerase III, epsilon subunit n=2 Tax=Aero... 122 5e-27 UniRef50_Q8NQY3 DNA polymerase III epsilon subunit and related 3... 122 5e-27 UniRef50_A3EQH5 DNA polymerase III, epsilon subunit n=2 Tax=Lept... 122 5e-27 UniRef50_A4A420 Exonuclease family n=3 Tax=unclassified Gammapro... 122 6e-27 UniRef50_Q057S0 DNA polymerase III, e subunit n=1 Tax=Buchnera a... 122 7e-27 UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria... 122 7e-27 UniRef50_Q8EDA7 Exonuclease n=1 Tax=Shewanella oneidensis RepID=... 122 8e-27 UniRef50_A8L7F0 Exonuclease RNase T and DNA polymerase III n=1 T... 122 8e-27 UniRef50_A5IU60 Exonuclease, RNase T and DNA polymerase III n=64... 122 8e-27 UniRef50_Q5E1T7 DNA polymerase III, epsilon-subunit paralog (3' ... 122 8e-27 UniRef50_C7M082 Exonuclease RNase T and DNA polymerase III n=1 T... 122 9e-27 UniRef50_C8WHL0 Exonuclease RNase T and DNA polymerase III n=1 T... 122 9e-27 UniRef50_D2Q9U9 DNA polymerase III, epsilon subunit n=2 Tax=Bifi... 121 9e-27 UniRef50_A7A5A0 Putative uncharacterized protein n=1 Tax=Bifidob... 121 1e-26 UniRef50_C8WSI6 Exonuclease RNase T and DNA polymerase III n=2 T... 121 1e-26 UniRef50_C5BKW5 Putative exonuclease n=1 Tax=Teredinibacter turn... 121 1e-26 UniRef50_A4B904 DNA polymerase III subunit epsilon n=1 Tax=Reine... 121 1e-26 UniRef50_A5U937 DNA polymerase III subunit epsilon DnaQ n=20 Tax... 121 1e-26 UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine m... 121 1e-26 UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC21... 121 1e-26 UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2... 121 1e-26 UniRef50_Q682U6 Putative uncharacterized protein At5g26940 n=3 T... 121 1e-26 UniRef50_D1XX28 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1XX2... 121 1e-26 UniRef50_B6WSP3 Putative uncharacterized protein n=1 Tax=Desulfo... 121 1e-26 UniRef50_Q084B5 Exonuclease, RNase T and DNA polymerase III n=8 ... 121 1e-26 UniRef50_C1D0R4 Putative DNA-directed DNA polymerase (DNA polyme... 121 1e-26 UniRef50_Q1QYX2 Exonuclease n=2 Tax=Gammaproteobacteria RepID=Q1... 121 2e-26 UniRef50_A3WQA1 3'-5' exonuclease n=1 Tax=Idiomarina baltica OS1... 120 2e-26 UniRef50_A4IMY1 Putative uncharacterized protein n=1 Tax=Geobaci... 120 2e-26 UniRef50_Q0VMJ4 Nuclease, putative n=1 Tax=Alcanivorax borkumens... 120 2e-26 UniRef50_C2MC99 Exonuclease n=3 Tax=Bacteroidales RepID=C2MC99_9... 120 2e-26 UniRef50_C5WML0 Putative uncharacterized protein Sb01g037840 n=1... 120 2e-26 UniRef50_C8PWB9 DNA polymerase III subunit epsilon n=1 Tax=Enhyd... 120 2e-26 UniRef50_A6W3F5 Exonuclease RNase T and DNA polymerase III n=2 T... 120 2e-26 UniRef50_Q2Q0H1 Putative DNA polymerase type III, exonuclease do... 120 3e-26 UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostr... 120 3e-26 UniRef50_C6W9X5 Exonuclease RNase T and DNA polymerase III n=1 T... 120 3e-26 UniRef50_C9S192 Exonuclease RNase T and DNA polymerase III n=6 T... 119 4e-26 UniRef50_C1SJH8 DNA polymerase III epsilon subunit-like 3'-5' ex... 119 5e-26 UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 2313... 119 5e-26 UniRef50_D1VY91 UvrD/REP helicase n=1 Tax=Prevotella timonensis ... 118 7e-26 UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D09... 118 7e-26 UniRef50_A4HKS0 Exonuclease-like protein (Dna polymerase iii eps... 118 9e-26 UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 T... 118 9e-26 UniRef50_UPI0001C41BCD exonuclease n=1 Tax=Methanobrevibacter ru... 118 1e-25 UniRef50_Q3ILF6 Putative DNA polymerase, exonuclease activity n=... 118 1e-25 UniRef50_Q0J9Z9 Os04g0623400 protein n=4 Tax=Oryza sativa RepID=... 118 1e-25 UniRef50_Q7UJ56 Probable DNA polymerase III polC-type n=1 Tax=Rh... 118 1e-25 UniRef50_D0WP21 Putative DNA polymerase III epsilon subunit n=1 ... 118 1e-25 UniRef50_Q5QUI3 3'-5' exonuclease n=1 Tax=Idiomarina loihiensis ... 117 2e-25 UniRef50_UPI0001B4C718 DNA polymerase III subunit epsilon n=1 Ta... 117 2e-25 UniRef50_C9PB04 DNA polymerase III epsilon subunit n=1 Tax=Vibri... 117 2e-25 UniRef50_D1C533 Exonuclease RNase T and DNA polymerase III n=1 T... 117 2e-25 UniRef50_UPI0001AEF4FD exonuclease RNase T and DNA polymerase II... 117 2e-25 UniRef50_A4C923 Putative DNA polymerase, exonuclease activity n=... 117 2e-25 UniRef50_D1W3Q1 DNA polymerase III subunit epsilon domain protei... 117 3e-25 UniRef50_D2VB97 Predicted protein n=1 Tax=Naegleria gruberi RepI... 116 3e-25 UniRef50_B8J155 Exonuclease RNase T and DNA polymerase III n=1 T... 116 4e-25 UniRef50_A9KDF1 Ribonuclease T n=5 Tax=Coxiella burnetii RepID=A... 116 4e-25 UniRef50_C1XFI0 DNA polymerase III epsilon subunit-like 3'-5' ex... 116 4e-25 UniRef50_Q03AH5 DNA polymerase III, epsilon subunit related 3'-5... 116 4e-25 UniRef50_Q10MN9 Os03g0301400 protein n=4 Tax=Poaceae RepID=Q10MN... 116 4e-25 UniRef50_B9F7W0 Putative uncharacterized protein n=3 Tax=Poaceae... 116 4e-25 UniRef50_B9JXT6 DNA polymerase III epsilon subunit-like 3-5 exon... 116 4e-25 UniRef50_Q7NC15 PolC n=1 Tax=Mycoplasma gallisepticum RepID=Q7NC... 115 5e-25 UniRef50_B0UJH8 Exonuclease RNase T and DNA polymerase III n=2 T... 115 5e-25 UniRef50_A1TI45 DNA-directed DNA polymerase n=4 Tax=Burkholderia... 115 5e-25 UniRef50_A9RDT8 Predicted protein n=6 Tax=Eukaryota RepID=A9RDT8... 115 6e-25 UniRef50_Q6LGI0 Putative DNA polymerase III n=1 Tax=Photobacteri... 115 6e-25 UniRef50_UPI0001BC4EA4 exonuclease n=4 Tax=Fusobacterium RepID=U... 115 7e-25 UniRef50_B5JTW6 Exonuclease, RNase T and DNA polymerase III n=1 ... 115 7e-25 UniRef50_A1Y2U5 Transposase n=2 Tax=Bacteria RepID=A1Y2U5_9BACT 115 7e-25 UniRef50_C6XW17 Exonuclease RNase T and DNA polymerase III n=74 ... 115 9e-25 UniRef50_C2S1I6 DnaQ family exonuclease/DinG family helicase n=3... 115 1e-24 UniRef50_Q1PZU3 Strongly similar DNA polymerase epsilon subunit ... 114 1e-24 UniRef50_A9VZJ3 Exonuclease RNase T and DNA polymerase III n=7 T... 114 1e-24 UniRef50_Q2RWQ8 Exonuclease n=1 Tax=Rhodospirillum rubrum ATCC 1... 114 1e-24 UniRef50_Q7MCI1 DNA polymerase III, epsilon subunit n=6 Tax=Vibr... 114 2e-24 UniRef50_D2B9E4 DNA-directed DNA polymerase n=1 Tax=Streptospora... 114 2e-24 UniRef50_A0JYL8 DNA polymerase III, epsilon subunit n=8 Tax=Micr... 114 2e-24 UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group... 113 2e-24 UniRef50_Q04A97 DNA polymerase III, epsilon subunit related 3'-5... 113 2e-24 UniRef50_C1DKH9 DNA polymerase III, epsilon subunit n=17 Tax=Pse... 113 2e-24 UniRef50_A1WUZ8 Ribonuclease T n=10 Tax=Gammaproteobacteria RepI... 113 2e-24 UniRef50_C2KP37 DNA polymerase III epsilon subunit n=3 Tax=Mobil... 113 2e-24 UniRef50_C5YG62 Putative uncharacterized protein Sb06g028980 n=1... 113 2e-24 UniRef50_A4B9Q7 Putative DNA polymerase, exonuclease activity n=... 113 2e-24 UniRef50_UPI000185C325 putative DNA polymerase III epsilon subun... 113 2e-24 UniRef50_C0GGY8 Exonuclease RNase T and DNA polymerase III n=1 T... 113 3e-24 UniRef50_C4LI81 Putative uncharacterized protein n=1 Tax=Coryneb... 113 4e-24 UniRef50_Q4ZCJ2 ORF013 n=5 Tax=root RepID=Q4ZCJ2_9CAUD 113 4e-24 UniRef50_UPI0001C31300 Exonuclease RNase T and DNA polymerase II... 112 5e-24 UniRef50_B4VF18 DNA polymerase III subunit epsilon n=9 Tax=Strep... 112 5e-24 UniRef50_Q6MC14 Putative DNA polymerase III, epsilon chain, mutD... 112 5e-24 UniRef50_A6GP03 Exonuclease n=1 Tax=Limnobacter sp. MED105 RepID... 112 6e-24 UniRef50_A6VT55 Exonuclease RNase T and DNA polymerase III n=1 T... 112 6e-24 UniRef50_UPI0001AF0A70 hypothetical protein AbauAB_10367 n=1 Tax... 112 6e-24 UniRef50_C7RVE9 Exonuclease RNase T and DNA polymerase III n=1 T... 112 6e-24 UniRef50_UPI0001B53E3D DNA polymerase III subunit epsilon n=1 Ta... 112 6e-24 UniRef50_C5V7D5 Exonuclease RNase T and DNA polymerase III n=1 T... 112 6e-24 UniRef50_Q2NHS5 Predicted 3'-5' exonuclease n=1 Tax=Methanosphae... 112 6e-24 UniRef50_UPI000196AD91 hypothetical protein CATMIT_00292 n=1 Tax... 112 7e-24 UniRef50_B9CLN3 Putative exonuclease, RNase T and DNA polymerase... 112 9e-24 UniRef50_B9ZRI9 Ribonuclease T n=3 Tax=Gammaproteobacteria RepID... 111 1e-23 UniRef50_A7HF37 Exonuclease RNase T and DNA polymerase III n=10 ... 111 1e-23 UniRef50_Q4E271 Exonuclease, putative n=1 Tax=Trypanosoma cruzi ... 111 1e-23 UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit ... 111 1e-23 UniRef50_D1BPK1 UvrD/REP helicase n=3 Tax=Veillonella RepID=D1BP... 110 2e-23 UniRef50_A0JY37 Exonuclease, RNase T and DNA polymerase III n=4 ... 110 2e-23 UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L... 110 2e-23 UniRef50_C2PKV5 DNA polymerase III subunit epsilon n=1 Tax=Bacil... 110 2e-23 UniRef50_Q6VY79 Putative uncharacterized protein n=1 Tax=Strepto... 110 3e-23 UniRef50_Q2W5M2 DNA polymerase III, epsilon subunit and related ... 110 3e-23 UniRef50_A9VVI2 Exonuclease RNase T and DNA polymerase III n=1 T... 110 3e-23 UniRef50_C6X498 DNA polymerase III subunit epsilon n=1 Tax=Flavo... 109 4e-23 UniRef50_D1C750 Exonuclease RNase T and DNA polymerase III n=1 T... 109 4e-23 UniRef50_Q4UJH2 DNA polymerase III, epsilon subunit-like protein... 109 4e-23 UniRef50_C0W0V1 DNA polymerase III subunit epsilon n=1 Tax=Actin... 109 4e-23 UniRef50_C5V7N5 Exonuclease RNase T and DNA polymerase III n=1 T... 109 5e-23 UniRef50_B5GC70 DNA polymerase III n=1 Tax=Streptomyces sp. SPB7... 109 5e-23 UniRef50_Q8KQK8 DNA polymerase III epsilon subunit (Fragment) n=... 109 6e-23 UniRef50_Q4D4F6 Exonuclease, putative n=1 Tax=Trypanosoma cruzi ... 109 6e-23 UniRef50_D1BL33 Exonuclease RNase T and DNA polymerase III n=3 T... 109 6e-23 UniRef50_Q1QRC1 Exonuclease n=1 Tax=Nitrobacter hamburgensis X14... 108 8e-23 UniRef50_C9LN05 DNA polymerase III PolC-type n=1 Tax=Dialister i... 108 9e-23 UniRef50_A6CY65 DNA polymerase III, epsilon subunit n=1 Tax=Vibr... 108 1e-22 UniRef50_UPI000038277F COG0847: DNA polymerase III, epsilon subu... 108 1e-22 UniRef50_D0U233 Putative exonuclease n=1 Tax=Clavibacter phage C... 108 1e-22 UniRef50_Q1WDI5 DNA polymerase III n=5 Tax=root RepID=Q1WDI5_9CAUD 108 1e-22 UniRef50_B5ETC4 DNA polymerase III, epsilon chain n=2 Tax=Vibrio... 108 1e-22 UniRef50_Q9HIG3 Putative uncharacterized protein Ta1376 n=1 Tax=... 107 2e-22 UniRef50_D0JBJ5 DNA polymerase III subunit epsilon n=1 Tax=Blatt... 107 2e-22 UniRef50_B8DPI8 Exonuclease RNase T and DNA polymerase III n=1 T... 107 2e-22 UniRef50_B9Z8P9 Exonuclease RNase T and DNA polymerase III n=3 T... 107 2e-22 UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=... 107 2e-22 UniRef50_Q12PE3 Ribonuclease T n=157 Tax=Gammaproteobacteria Rep... 107 2e-22 UniRef50_A7SLH3 Predicted protein n=1 Tax=Nematostella vectensis... 107 2e-22 UniRef50_UPI0001B52926 exonuclease, RNase T and DNA polymerase I... 107 3e-22 UniRef50_A7GA16 Exonuclease, DNA polymerase III, epsilon subunit... 107 3e-22 UniRef50_A7HLA2 DNA polymerase III, epsilon subunit n=3 Tax=Ther... 106 3e-22 UniRef50_C0WKD3 DNA polymerase III epsilon subunit n=5 Tax=Coryn... 106 4e-22 UniRef50_C0WBN5 Putative uncharacterized protein n=1 Tax=Acidami... 106 5e-22 UniRef50_Q11Z63 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 105 5e-22 UniRef50_C8PWE0 Exonuclease, Ycg4D n=1 Tax=Enhydrobacter aerosac... 105 6e-22 UniRef50_D1U8F3 Exonuclease RNase T and DNA polymerase III n=1 T... 105 6e-22 UniRef50_P41060 Uncharacterized exonuclease CP81 n=12 Tax=root R... 105 6e-22 UniRef50_A4WYE4 Transposase and inactivated derivatives-like pro... 105 7e-22 UniRef50_C1YH96 DNA polymerase III epsilon subunit-like 3'-5' ex... 105 8e-22 UniRef50_D0B846 Exonuclease n=51 Tax=Alphaproteobacteria RepID=D... 105 1e-21 UniRef50_C1YMP7 DNA polymerase III epsilon subunit-like 3'-5' ex... 105 1e-21 UniRef50_A9M0U8 DNA polymerase III, epsilon subunit n=9 Tax=Neis... 104 1e-21 UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacte... 104 1e-21 UniRef50_B2GAN1 DNA-directed DNA polymerase III epsilon subunit ... 104 1e-21 UniRef50_Q47RH7 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 104 2e-21 UniRef50_B4SAW0 Exonuclease RNase T and DNA polymerase III n=2 T... 104 2e-21 UniRef50_A6DRG8 Putative exonuclease n=1 Tax=Lentisphaera araneo... 104 2e-21 UniRef50_UPI000169A625 DNA polymerase III, epsilon subunit n=1 T... 103 2e-21 UniRef50_Q4V274 Possible exonuclease n=3 Tax=Bacillus cereus Rep... 103 2e-21 UniRef50_Q2FLJ5 Exonuclease n=1 Tax=Methanospirillum hungatei JF... 103 3e-21 UniRef50_C0YRX4 Possible DNA-directed DNA polymerase III n=1 Tax... 103 3e-21 UniRef50_A1VSD3 Exonuclease, RNase T and DNA polymerase III n=1 ... 103 3e-21 UniRef50_C2G0Y5 DNA polymerase III, epsilon subunit n=8 Tax=Bact... 103 3e-21 UniRef50_Q2S3Z9 Exonuclease, putative n=1 Tax=Salinibacter ruber... 102 5e-21 UniRef50_C7U038 Putative uncharacterized protein n=1 Tax=Ostreoc... 102 5e-21 UniRef50_A5UAG1 Ribonuclease T n=251 Tax=Proteobacteria RepID=RN... 102 7e-21 UniRef50_B3EM65 Exonuclease RNase T and DNA polymerase III n=1 T... 102 8e-21 UniRef50_C7LT45 Exonuclease RNase T and DNA polymerase III n=4 T... 102 8e-21 UniRef50_C4LJG9 Putative DNA polymerase III epsilon subunit n=1 ... 102 9e-21 UniRef50_Q47UC9 Exonuclase n=2 Tax=Alteromonadales RepID=Q47UC9_... 102 9e-21 UniRef50_D1Y3R1 Putative DNA polymerase III PolC-type (PolIII) n... 102 9e-21 UniRef50_D2EFA4 Exonuclease RNase T and DNA polymerase III n=1 T... 102 9e-21 UniRef50_C9YB77 Putative uncharacterized protein n=1 Tax=Curviba... 102 1e-20 UniRef50_Q1J224 Exonuclease domain in DNA-polymerase alpha and e... 101 1e-20 UniRef50_Q3JDE1 Exonuclease n=4 Tax=Gammaproteobacteria RepID=Q3... 101 1e-20 UniRef50_B7GKP6 3'-5' exonuclease related protein n=1 Tax=Anoxyb... 101 1e-20 UniRef50_B8F0B3 Exonuclease RNase T and DNA polymerase III n=2 T... 101 1e-20 UniRef50_Q04DG0 DNA polymerase III, epsilon subunit or related 3... 101 1e-20 UniRef50_C3WAY8 Predicted protein n=1 Tax=Fusobacterium mortifer... 101 1e-20 UniRef50_Q1ZEA2 DNA polymerase III, epsilon chain n=1 Tax=Psychr... 101 2e-20 UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsi... 100 2e-20 UniRef50_Q15YI0 Exonuclease, RNase T and DNA polymerase III n=1 ... 100 2e-20 UniRef50_B2A6Q7 Exonuclease RNase T and DNA polymerase III n=1 T... 100 2e-20 UniRef50_C1AA06 Exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27... 100 2e-20 UniRef50_C6XJL2 Exonuclease RNase T and DNA polymerase III n=1 T... 100 2e-20 UniRef50_B9YE07 Putative uncharacterized protein n=1 Tax=Holdema... 100 3e-20 UniRef50_A1RGY9 Exonuclease, RNase T and DNA polymerase III n=20... 100 3e-20 UniRef50_Q6UAU3 Gp39 n=1 Tax=Klebsiella phage phiKO2 RepID=Q6UAU... 100 3e-20 UniRef50_Q2QCR8 Putative uncharacterized protein n=1 Tax=Pseudom... 100 3e-20 UniRef50_D1N0X4 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 100 3e-20 UniRef50_C5NYM3 ATP-dependent helicase DinG homolog n=1 Tax=Geme... 100 3e-20 UniRef50_A6GQ42 DNA polymerase III subunit epsilon n=1 Tax=Limno... 100 3e-20 UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellu... 100 4e-20 UniRef50_UPI0001AEBC71 putative DNA polymerase, exonuclease acti... 100 4e-20 UniRef50_C7JDE1 DNA polymerase III exonuclease epsilon subunit l... 100 4e-20 UniRef50_B9NP01 Exonuclease n=1 Tax=Rhodobacteraceae bacterium K... 100 4e-20 UniRef50_D0I3G5 Putative exonuclease n=1 Tax=Grimontia hollisae ... 100 5e-20 UniRef50_B4TI94 Exonuclease n=2 Tax=root RepID=B4TI94_SALHS 100 5e-20 UniRef50_A2CAY4 Possible DNA polymerase III, epsilon subunit n=1... 100 5e-20 UniRef50_D1PSL1 Putative DNA polymerase III, epsilon subunit n=1... 99 6e-20 UniRef50_A2PLZ2 Gp39 n=2 Tax=Vibrio cholerae RepID=A2PLZ2_VIBCH 99 6e-20 UniRef50_C0W5G3 Possible DNA polymerase III subunit epsilon (Fra... 99 7e-20 UniRef50_A7B9H5 Putative uncharacterized protein n=1 Tax=Actinom... 99 7e-20 UniRef50_C6X5Z0 DNA polymerase III alpha subunit n=1 Tax=Flavoba... 99 7e-20 UniRef50_C2UN60 Exonuclease n=4 Tax=Bacillus cereus group RepID=... 99 9e-20 UniRef50_D0LL62 Exonuclease RNase T and DNA polymerase III n=1 T... 99 9e-20 UniRef50_B4RRS4 Putative DNA polymerase, exonuclease activity n=... 99 9e-20 UniRef50_Q934V3 Putative uncharacterized protein HCM2.0114c n=1 ... 99 9e-20 UniRef50_A2SL61 Exonuclease n=1 Tax=Methylibium petroleiphilum P... 99 9e-20 UniRef50_A9CIB7 DNA polymerase III, epsilon subunit n=4 Tax=Alph... 99 1e-19 UniRef50_A0Y7J9 Putative exonuclease n=1 Tax=marine gamma proteo... 98 1e-19 UniRef50_C6MU49 Exonuclease RNase T and DNA polymerase III n=1 T... 98 1e-19 UniRef50_A4AJM3 DNA polymerase III subunit epsilon n=4 Tax=Actin... 98 1e-19 UniRef50_Q68BL2 DNA helicase RecG n=2 Tax=cellular organisms Rep... 98 1e-19 UniRef50_Q2SC89 Putative exonuclease n=1 Tax=Hahella chejuensis ... 98 1e-19 UniRef50_B8GP22 Exonuclease n=1 Tax=Thioalkalivibrio sp. HL-EbGR... 98 2e-19 UniRef50_D0KYH5 Ribonuclease T n=2 Tax=Gammaproteobacteria RepID... 98 2e-19 UniRef50_B0UVN4 Exonuclease RNase T and DNA polymerase III n=2 T... 98 2e-19 UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 ... 98 2e-19 UniRef50_B8HX99 Exonuclease RNase T and DNA polymerase III n=2 T... 97 2e-19 UniRef50_D2MNZ8 Exonuclease n=1 Tax=Bulleidia extructa W1219 Rep... 97 2e-19 UniRef50_C6DYG6 Exonuclease RNase T and DNA polymerase III n=3 T... 97 2e-19 UniRef50_C9M2Y5 Putative uncharacterized protein (Fragment) n=1 ... 97 3e-19 UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Ente... 97 3e-19 UniRef50_A3JK24 DNA polymerase III subunit epsilon n=1 Tax=Marin... 97 3e-19 UniRef50_A7RWU1 Predicted protein n=2 Tax=Nematostella vectensis... 97 3e-19 UniRef50_Q6A708 Putative DNA polymerase III epsilon subunit (Exo... 97 3e-19 UniRef50_C9LHX7 Exonuclease n=1 Tax=Prevotella tannerae ATCC 512... 97 4e-19 UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID... 96 5e-19 UniRef50_B1YF69 Exonuclease RNase T and DNA polymerase III n=2 T... 96 5e-19 UniRef50_B1MC17 Putative uncharacterized protein n=1 Tax=Mycobac... 96 5e-19 UniRef50_C9P6S7 DNA polymerase III epsilon subunit n=1 Tax=Vibri... 96 6e-19 UniRef50_A2C180 Possible DNA polymerase III, epsilon subunit n=2... 96 7e-19 UniRef50_B1JN65 Exonuclease RNase T and DNA polymerase III n=4 T... 95 8e-19 UniRef50_B9JNT5 Polymerase epsilon subunit protein n=1 Tax=Agrob... 95 8e-19 UniRef50_C5BZW8 Exonuclease RNase T and DNA polymerase III n=6 T... 95 1e-18 UniRef50_B9L7I4 Exonuclease family n=2 Tax=Nautiliaceae RepID=B9... 95 1e-18 UniRef50_A8QYU9 DNA polymerase III subunit epsilon n=3 Tax=Legio... 95 1e-18 UniRef50_D2QID7 Exonuclease RNase T and DNA polymerase III n=2 T... 95 1e-18 UniRef50_Q06GG8 Putative exonuclease n=2 Tax=Rhodococcus RepID=Q... 94 2e-18 UniRef50_A4HVE4 Mitochondrial DNA polymerase I protein B, putati... 94 2e-18 UniRef50_C8NL35 DNA polymerase III, epsilon subunit n=20 Tax=Cor... 94 3e-18 UniRef50_Q4Q4Z6 Exonuclease-like protein (Dna polymerase iii eps... 94 3e-18 UniRef50_A3W6U6 Probable DNA polymerase III (Epsilon chain) prot... 94 3e-18 UniRef50_B1BYN4 Putative uncharacterized protein n=1 Tax=Clostri... 94 3e-18 UniRef50_C0VS85 Putative uncharacterized protein n=3 Tax=Coryneb... 93 4e-18 UniRef50_C9LQ99 Exonuclease n=1 Tax=Dialister invisus DSM 15470 ... 93 4e-18 UniRef50_A8JCL9 Predicted protein n=2 Tax=Viridiplantae RepID=A8... 93 4e-18 UniRef50_A7K3S7 DNA polymerase III, alpha subunit n=8 Tax=Vibrio... 93 4e-18 UniRef50_C6WSG9 Exonuclease RNase T and DNA polymerase III n=1 T... 93 4e-18 UniRef50_C7R5J9 DNA polymerase III, epsilon subunit n=1 Tax=Jone... 93 4e-18 UniRef50_C7QA32 Exonuclease RNase T and DNA polymerase III n=1 T... 93 4e-18 UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteria... 92 6e-18 UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T... 92 7e-18 UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae ... 92 8e-18 UniRef50_B2K016 Exonuclease RNase T and DNA polymerase III n=2 T... 92 8e-18 UniRef50_C6QF81 Exonuclease RNase T and DNA polymerase III n=1 T... 92 9e-18 UniRef50_Q0BGF9 Exonuclease, RNase T and DNA polymerase III n=1 ... 92 9e-18 UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacte... 92 1e-17 UniRef50_Q5NWQ5 Putative exonuclease n=1 Tax=Aromatoleum aromati... 92 1e-17 UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate divisio... 92 1e-17 UniRef50_Q4D4N5 Mitochondrial DNA polymerase I protein B, putati... 92 1e-17 UniRef50_C0VTT8 DNA polymerase III epsilon subunit (Exonuclease)... 92 1e-17 UniRef50_A0R7K3 Exonuclease, RNase T and DNA polymerase III n=1 ... 91 1e-17 UniRef50_D1H2G0 Whole genome shotgun sequence of line PN40024, s... 91 1e-17 UniRef50_D0ZEQ2 Orf81 bacteriophage 186 n=1 Tax=Edwardsiella tar... 91 1e-17 UniRef50_A2BVT4 Possible DNA polymerase III, epsilon subunit n=8... 91 1e-17 UniRef50_C6JNE1 Exonuclease RNase T and DNA polymerase III n=2 T... 91 2e-17 UniRef50_B8HHY2 Exonuclease RNase T and DNA polymerase III n=1 T... 91 2e-17 UniRef50_C0VV73 DNA polymerase III epsilon subunit n=2 Tax=Coryn... 91 2e-17 UniRef50_C8NWG5 DNA polymerase III, epsilon subunit n=1 Tax=Cory... 91 2e-17 UniRef50_Q0S6F1 DNA polymerase n=4 Tax=Rhodococcus RepID=Q0S6F1_... 91 2e-17 UniRef50_A1U7Q5 Exonuclease, RNase T and DNA polymerase III n=1 ... 91 2e-17 UniRef50_UPI0001BC2AF6 5''''-3'''' exonuclease (including N-term... 90 2e-17 UniRef50_O64348 Gp41 n=3 Tax=root RepID=O64348_BPN15 90 3e-17 UniRef50_Q2S065 DNA helicase II n=1 Tax=Salinibacter ruber DSM 1... 90 3e-17 UniRef50_B8H5Y8 DNA polymerase III epsilon-like protein n=2 Tax=... 90 3e-17 UniRef50_Q0IXT1 Os10g0407500 protein n=5 Tax=Magnoliophyta RepID... 90 3e-17 UniRef50_C4NV58 Exonuclease family protein n=11 Tax=Bacteria Rep... 90 3e-17 UniRef50_Q0F2C4 DNA polymerase III subunit epsilon n=1 Tax=Marip... 90 3e-17 UniRef50_D1B7G9 Exonuclease RNase T and DNA polymerase III n=1 T... 90 4e-17 UniRef50_Q8QNF3 EsV-1-126 n=1 Tax=Ectocarpus siliculosus virus 1... 90 4e-17 UniRef50_UPI000174666F hypothetical protein VspiD_20115 n=1 Tax=... 90 4e-17 UniRef50_C5WTF0 Putative uncharacterized protein Sb01g029940 n=3... 90 5e-17 UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacter... 90 5e-17 UniRef50_C6BPA9 Exonuclease RNase T and DNA polymerase III n=2 T... 89 5e-17 UniRef50_B8GE83 Exonuclease RNase T and DNA polymerase III n=1 T... 89 5e-17 UniRef50_B9J6H2 Bacteriophage 186 Orf81-like protein n=1 Tax=Bac... 89 6e-17 UniRef50_Q6ML77 DNA polymerase III polC-type n=1 Tax=Bdellovibri... 89 6e-17 UniRef50_A9CEN2 Polymerase epsilon subunit n=5 Tax=cellular orga... 89 6e-17 UniRef50_C5CA98 Exonuclease, DNA polymerase III, epsilon subunit... 89 6e-17 UniRef50_B2UMX8 Exonuclease RNase T and DNA polymerase III n=1 T... 89 6e-17 UniRef50_Q4SE72 Chromosome undetermined SCAF14625, whole genome ... 89 6e-17 UniRef50_C8NWH7 DNA polymerase III subunit epsilon n=1 Tax=Coryn... 89 7e-17 UniRef50_A4FXS5 Exonuclease, RNase T and DNA polymerase III n=5 ... 89 7e-17 UniRef50_B9FK06 Putative uncharacterized protein n=1 Tax=Oryza s... 89 7e-17 UniRef50_A4TY99 DNA polymerase III, epsilon subunit and related ... 89 8e-17 UniRef50_A0B4X4 Exonuclease, RNase T and DNA polymerase III n=2 ... 89 9e-17 UniRef50_B6U6C6 Exonuclease n=1 Tax=Zea mays RepID=B6U6C6_MAIZE 89 9e-17 UniRef50_B9KY42 Putative DNA polymerase III, epsilon chain (EC )... 89 1e-16 UniRef50_Q211V1 Exonuclease n=2 Tax=Rhizobiales RepID=Q211V1_RHOPB 89 1e-16 UniRef50_Q6XNA5 Putative uncharacterized protein n=1 Tax=Rhodoco... 89 1e-16 UniRef50_A1ZEC3 DNA polymerase III alpha subunit n=2 Tax=Bactero... 88 2e-16 UniRef50_C0QMS3 Predicted type III DNA polymerase PolC n=1 Tax=D... 87 2e-16 UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax... 87 2e-16 UniRef50_D2RA75 Exonuclease n=1 Tax=Gardnerella vaginalis 409-05... 87 2e-16 UniRef50_C9KKS1 Putative DNA polymerase III subunit epsilon n=1 ... 87 2e-16 UniRef50_Q5NUS9 Putative exonuclease n=1 Tax=Streptomyces albulu... 87 3e-16 UniRef50_Q8KQH6 DNA polymerase III epsilon subunit (Fragment) n=... 87 3e-16 UniRef50_D1B1G8 Exonuclease RNase T and DNA polymerase III n=1 T... 87 3e-16 UniRef50_Q2B6U8 DNA polymerase III subunit epsilon n=1 Tax=Bacil... 87 3e-16 UniRef50_C9PFC2 DNA polymerase III epsilon subunit n=2 Tax=Vibri... 87 3e-16 UniRef50_D0JAY7 DNA polymerase III subunit alpha n=2 Tax=Blattab... 87 4e-16 UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3X... 86 4e-16 UniRef50_B1P7L9 YacC n=21 Tax=root RepID=B1P7L9_ECOLX 86 5e-16 UniRef50_Q0EWR1 Putative uncharacterized protein n=1 Tax=Maripro... 86 5e-16 UniRef50_C1YIK4 DNA polymerase III, epsilon subunit n=1 Tax=Noca... 86 6e-16 UniRef50_A7B402 Putative uncharacterized protein n=1 Tax=Ruminoc... 86 6e-16 UniRef50_B9KC73 Putative uncharacterized protein n=1 Tax=Campylo... 86 6e-16 UniRef50_C5R9G6 Putative uncharacterized protein n=1 Tax=Weissel... 86 6e-16 UniRef50_UPI0001C34DC4 sporulation inhibitor KapD n=1 Tax=Clostr... 86 7e-16 UniRef50_Q2MG35 DNA polymerase III, epsilon subunit n=1 Tax=Micr... 86 7e-16 UniRef50_A5PD63 DNA polymerase III subunit epsilon n=1 Tax=Eryth... 85 8e-16 UniRef50_Q9APT6 DNA polymerase III n=1 Tax=Pseudomonas aeruginos... 85 8e-16 UniRef50_D1HJW3 Whole genome shotgun sequence of line PN40024, s... 85 9e-16 UniRef50_B5MA46 Putative DNA polymerase III, epsilon subunit n=5... 85 1e-15 UniRef50_Q5YSF0 Putative DNA polymerase n=1 Tax=Nocardia farcini... 85 1e-15 UniRef50_Q1NCK1 DNA polymerase III epsilon subunit and related 3... 85 1e-15 UniRef50_D1N3T8 Exonuclease RNase T and DNA polymerase III n=1 T... 85 1e-15 UniRef50_C2CUZ9 DNA polymerase III subunit epsilon n=1 Tax=Gardn... 85 1e-15 UniRef50_C5YXX8 Putative uncharacterized protein Sb09g000300 n=1... 85 1e-15 UniRef50_A1AZ69 Exonuclease, RNase T and DNA polymerase III n=1 ... 85 2e-15 UniRef50_Q31EW8 Putative uncharacterized protein n=1 Tax=Thiomic... 84 2e-15 UniRef50_D0MET1 Exonuclease RNase T and DNA polymerase III n=1 T... 84 2e-15 UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 ... 84 2e-15 UniRef50_A7ILL5 Exonuclease RNase T and DNA polymerase III n=1 T... 84 2e-15 UniRef50_B0KHB9 Exonuclease RNase T and DNA polymerase III n=3 T... 84 2e-15 UniRef50_A3WGA0 DNA polymerase III subunit epsilon n=1 Tax=Eryth... 84 2e-15 UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp.... 84 2e-15 UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphapr... 84 3e-15 UniRef50_A6WH29 Exonuclease RNase T and DNA polymerase III n=1 T... 84 3e-15 UniRef50_UPI0000E11812 exonuclease, RNase T and DNA polymerase I... 84 3e-15 UniRef50_Q2S4M8 Exonuclease, putative n=1 Tax=Salinibacter ruber... 84 3e-15 UniRef50_C0VSD3 DNA polymerase III subunit epsilon n=3 Tax=Actin... 84 3e-15 UniRef50_UPI000187EE2E hypothetical protein MPER_14994 n=1 Tax=M... 83 4e-15 UniRef50_Q2W5J8 DNA polymerase III epsilon subunit and related 3... 83 5e-15 UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus ... 83 5e-15 UniRef50_A6LS67 Exonuclease, RNase T and DNA polymerase III n=17... 82 6e-15 UniRef50_B1X404 Possible DNA polymerase III, epsilon subunit n=1... 82 7e-15 UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales... 82 7e-15 UniRef50_Q1WA52 Putative uncharacterized protein (Fragment) n=3 ... 82 7e-15 UniRef50_C0VTN4 DNA polymerase III, epsilon subunit n=3 Tax=Cory... 82 8e-15 UniRef50_Q9FLR0 Exonuclease-like protein n=4 Tax=Magnoliophyta R... 82 8e-15 UniRef50_UPI00016EA237 UPI00016EA237 related cluster n=1 Tax=Tak... 82 8e-15 UniRef50_D2QVF1 Exonuclease RNase T and DNA polymerase III n=1 T... 82 8e-15 UniRef50_A6W8W5 Exonuclease RNase T and DNA polymerase III n=1 T... 82 9e-15 UniRef50_Q8DQ14 DNA polymerase III, epsilon chain n=57 Tax=Strep... 82 9e-15 UniRef50_A0YUY5 Putative uncharacterized protein n=1 Tax=Lyngbya... 81 1e-14 UniRef50_A5Z7C9 Putative uncharacterized protein n=1 Tax=Eubacte... 81 2e-14 UniRef50_Q81AM4 DNA polymerase III, epsilon chain n=71 Tax=Bacil... 81 2e-14 UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter as... 81 2e-14 UniRef50_B9KV46 Exonuclease n=1 Tax=Rhodobacter sphaeroides KD13... 81 2e-14 UniRef50_Q0SR27 Exonuclease family protein n=9 Tax=Clostridium p... 80 3e-14 UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas ... 80 3e-14 UniRef50_A1K7L4 DNA-directed DNA polymerase n=3 Tax=Rhodocyclace... 80 3e-14 UniRef50_A7GE01 Putative DNA polymerase III, epsilon subunit n=1... 80 3e-14 UniRef50_A1YZY0 Gram-positive type DNA polymerase III alpha subu... 80 4e-14 UniRef50_C4V0M2 Putative uncharacterized protein n=2 Tax=Selenom... 80 4e-14 UniRef50_Q0RM97 Putative DNA-directed DNA polymerase n=1 Tax=Fra... 80 4e-14 UniRef50_A7VNP2 Putative uncharacterized protein n=1 Tax=Clostri... 80 5e-14 UniRef50_Q9FLJ5 Exonuclease-like protein n=3 Tax=Arabidopsis tha... 80 5e-14 UniRef50_B8HJ08 Exonuclease RNase T and DNA polymerase III n=1 T... 80 5e-14 UniRef50_UPI0000D55BE7 PREDICTED: similar to three prime repair ... 79 6e-14 UniRef50_A6GY64 Probable exonuclease n=1 Tax=Flavobacterium psyc... 79 7e-14 UniRef50_Q9BQ50 Three prime repair exonuclease 2 n=14 Tax=Mammal... 79 7e-14 UniRef50_A3DCR5 Exonuclease, RNase T and DNA polymerase III n=3 ... 79 7e-14 UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2... 79 7e-14 UniRef50_C7NAB6 Exonuclease RNase T and DNA polymerase III n=4 T... 79 8e-14 UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium... 79 8e-14 UniRef50_C3JCF9 Exonuclease n=2 Tax=Bacteria RepID=C3JCF9_9PORP 79 8e-14 UniRef50_C4RLL5 DNA polymerase III, epsilon subunit n=1 Tax=Micr... 79 9e-14 UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xa... 79 9e-14 UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus cap... 79 1e-13 UniRef50_C0FN99 Putative uncharacterized protein n=1 Tax=Rosebur... 79 1e-13 UniRef50_D1PLI9 Exonuclease family protein n=4 Tax=Ruminococcace... 78 1e-13 UniRef50_A6VF58 Exonuclease RNase T and DNA polymerase III n=2 T... 78 2e-13 UniRef50_C5B4H5 Putative Exonuclease n=1 Tax=Methylobacterium ex... 78 2e-13 UniRef50_UPI0001699634 exonuclase n=1 Tax=Endoriftia persephone ... 78 2e-13 UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinel... 77 2e-13 UniRef50_Q6ADV7 DNA polymerase III, epsilon subunit n=4 Tax=Micr... 77 2e-13 UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=... 77 2e-13 UniRef50_C7X7A5 Exonuclease n=4 Tax=Bacteroidales RepID=C7X7A5_9... 77 2e-13 UniRef50_C1BCH2 Putative exonuclease n=1 Tax=Rhodococcus opacus ... 77 2e-13 UniRef50_A8SRC5 Putative uncharacterized protein n=2 Tax=Clostri... 77 3e-13 UniRef50_B2V1C6 Exonuclease, RNase T and DNA polymerase III n=5 ... 77 3e-13 UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitroso... 77 3e-13 UniRef50_UPI0001692E28 hypothetical protein Plarl_02538 n=1 Tax=... 77 3e-13 UniRef50_A8WA49 Gp61 n=1 Tax=Mycobacterium phage Giles RepID=A8W... 77 3e-13 UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID... 77 3e-13 UniRef50_B8HYX4 Exonuclease RNase T and DNA polymerase III n=1 T... 77 4e-13 UniRef50_C0XQ35 DNA polymerase III epsilon subunit (Exonuclease)... 77 4e-13 UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteo... 77 4e-13 UniRef50_B9RLV7 Exonuclease, putative n=1 Tax=Ricinus communis R... 76 5e-13 UniRef50_D2Q5V7 DnaQ DNA polymerase III alpha subunit n=4 Tax=Bi... 76 5e-13 UniRef50_A9HQT1 Exonuclease n=3 Tax=Proteobacteria RepID=A9HQT1_... 76 5e-13 UniRef50_B6FR49 Putative uncharacterized protein n=2 Tax=Clostri... 76 6e-13 UniRef50_B1ZD08 Exonuclease RNase T and DNA polymerase III n=1 T... 76 6e-13 UniRef50_Q2JLB6 Exonuclease family protein n=1 Tax=Synechococcus... 76 7e-13 UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepI... 75 8e-13 UniRef50_C6WRT0 Exonuclease RNase T and DNA polymerase III n=1 T... 75 9e-13 UniRef50_C7RL54 Exonuclease RNase T and DNA polymerase III n=1 T... 75 9e-13 UniRef50_D1AX10 Exonuclease RNase T and DNA polymerase III n=1 T... 75 9e-13 UniRef50_UPI0001B530B7 YacC n=1 Tax=Escherichia sp. 4_1_40B RepI... 75 1e-12 UniRef50_B9N4N5 Predicted protein n=4 Tax=Magnoliophyta RepID=B9... 75 1e-12 UniRef50_Q1NYP0 DNA polymerase III alpha subunit (Fragment) n=4 ... 75 1e-12 UniRef50_C6CTA0 Exonuclease RNase T and DNA polymerase III n=1 T... 75 1e-12 UniRef50_C6C8G0 Exonuclease RNase T and DNA polymerase III n=2 T... 75 2e-12 UniRef50_UPI0001B535E1 exonuclease n=1 Tax=Streptomyces sp. AA4 ... 74 2e-12 UniRef50_B3W7U1 DNA polymerase III, alpha subunit (Gram-positive... 74 2e-12 UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacte... 74 2e-12 UniRef50_A5I455 Exonuclease family protein n=11 Tax=Clostridium ... 74 2e-12 UniRef50_C0ZJM1 Putative uncharacterized protein n=1 Tax=Breviba... 74 2e-12 UniRef50_C6Q2Y2 Exonuclease RNase T and DNA polymerase III n=1 T... 74 2e-12 UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae ... 74 2e-12 UniRef50_A6QIL2 Phage exonuclease n=19 Tax=root RepID=A6QIL2_STAAE 74 3e-12 UniRef50_A6M0I3 Exonuclease, RNase T and DNA polymerase III n=3 ... 74 3e-12 UniRef50_Q1Q8L3 Exodeoxyribonuclease X n=1 Tax=Psychrobacter cry... 74 3e-12 UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae... 74 4e-12 UniRef50_A7VSN5 Putative uncharacterized protein n=1 Tax=Clostri... 74 4e-12 UniRef50_Q28W63 Exonuclease n=5 Tax=Rhodobacterales RepID=Q28W63... 73 4e-12 UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacte... 73 4e-12 UniRef50_C8NDE4 DNA polymerase III, epsilon subunit n=1 Tax=Card... 73 4e-12 UniRef50_B5W5I7 Exonuclease RNase T and DNA polymerase III n=2 T... 73 5e-12 UniRef50_A6W317 Exonuclease RNase T and DNA polymerase III n=11 ... 73 5e-12 UniRef50_Q0G0B0 Exodeoxyribonuclease X n=2 Tax=Aurantimonadaceae... 73 6e-12 UniRef50_B5K1P1 Exonuclease n=4 Tax=Octadecabacter antarcticus R... 73 6e-12 UniRef50_D0AAH2 Exonuclease, putative n=2 Tax=Trypanosoma brucei... 72 7e-12 UniRef50_A9HKJ8 Exonuclease RNase T and DNA polymerase III n=1 T... 72 8e-12 UniRef50_C1SHC8 DNA polymerase III, alpha subunit (Gram-positive... 72 8e-12 UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=... 72 1e-11 UniRef50_B3W7P1 DNA polymerase III, alpha subunit n=4 Tax=Lactob... 72 1e-11 UniRef50_B9KV31 Putative uncharacterized protein n=1 Tax=Rhodoba... 72 1e-11 UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 T... 72 1e-11 UniRef50_Q2WBD0 Inhibitor of the KinA pathway to sporulation n=2... 72 1e-11 UniRef50_Q2SI88 Putative exonuclease n=1 Tax=Hahella chejuensis ... 72 1e-11 UniRef50_C4Z5C1 Sporulation inhibitor KapD n=1 Tax=Eubacterium e... 72 1e-11 UniRef50_B3R1Q5 Putative membrane linked exonuclease n=1 Tax=Cup... 71 1e-11 UniRef50_C3Z6U9 Putative uncharacterized protein n=2 Tax=Branchi... 71 2e-11 UniRef50_A6G9M5 DNA polymerase III, epsilon subunit n=1 Tax=Ples... 71 2e-11 UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 71 2e-11 UniRef50_Q6QH49 3' repair exonuclease n=4 Tax=Alphabaculovirus R... 71 2e-11 UniRef50_A6UUF8 Exonuclease RNase T and DNA polymerase III n=3 T... 70 3e-11 UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL... 70 3e-11 UniRef50_Q1VTB2 Putative uncharacterized protein n=1 Tax=Psychro... 70 3e-11 UniRef50_B0WAN4 Three prime repair exonuclease 1 n=3 Tax=Culicin... 70 3e-11 UniRef50_Q7X182 Lfe210p1 (Fragment) n=1 Tax=Leptospirillum ferro... 70 3e-11 UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 70 4e-11 UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammapr... 70 5e-11 UniRef50_C4XHY0 Putative uncharacterized protein n=1 Tax=Desulfo... 70 5e-11 UniRef50_B2WGV1 RNA exonuclease 4 n=2 Tax=Pleosporineae RepID=B2... 70 5e-11 UniRef50_UPI0000382776 hypothetical protein Magn03001139 n=1 Tax... 70 5e-11 UniRef50_Q6MAQ4 Putative uncharacterized protein n=1 Tax=Candida... 70 5e-11 UniRef50_C2KW89 Putative uncharacterized protein n=1 Tax=Oribact... 69 7e-11 >UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT Length = 726 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 + +V D+ETTGL+ E+G + V G+ + F + + +++ G Sbjct: 418 LEDDFVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDRFSAFVNP--GVSIPSFIVKLTG 475 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E ++++G+ N FD + + Sbjct: 476 ITDDMVKDA----PPVEQVLNEFMEFIQGSVLVAHNANFDVGFIKQNAKLMG-------- 523 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +V + + L + L+ VA+ L + + N H A+ D+ ATA F Sbjct: 524 EKVKNPYIDTLE---LCRKMFPELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIFMHC 580 Query: 180 RHTA 183 + Sbjct: 581 INIL 584 >UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia RepID=DPO3_CLOTE Length = 1427 Score = 192 bits (488), Expect = 6e-48, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 69/175 (39%), Gaps = 18/175 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 +V D+ETTG +E+G + + G+ + + + E++ K +E+ G ++ Sbjct: 413 YVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIP--EKIIELTGIHDY 470 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + D++ + N FD + + + + + F+ Sbjct: 471 MVKDA----PKIEEVLPKFIDFIEDSILVAHNANFDVSFIKKNCKDFGIHFN-------- 518 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L + K + L+ VA+ LG+P++N H A+ DA T Sbjct: 519 NPILDTIP---LCKFLYPELKRYKLNVVAKHLGIPLLNHHRAVEDAKTTGDILLK 570 >UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW68_HALOH Length = 1397 Score = 191 bits (485), Expect = 1e-47, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 17/177 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 + +V DLETTGL+ +E+G + V +G+ + F + + + K E+ G Sbjct: 382 SATFVVFDLETTGLNKFKNEIIEIGAVKVKSGKVIDEFSSFVKPGE--SIPNKITELTGI 439 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + R G+ +++ G+ N FD + G Sbjct: 440 TNEMVSRA----PDIEGVIGDFLEFIDGSILVAHNADFDYGFLQVALKKTGQ-------G 488 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L + + L+ +A L V + N H A+ DA AT+ F Sbjct: 489 DISYPVLDT---LTLSRALLPDLSNHKLNTLARHLNVRLDNHHRAVEDARATSEIFI 542 >UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWZ0_STRM9 Length = 1465 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 71/186 (38%), Gaps = 18/186 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGY 60 ++ +V D+ETTG +E+G + + G+ L PK +E+ G Sbjct: 401 EEEFVVFDIETTGFSPINDKIIEIGAVKLKNGKVLD--RFSEFVNPQTIIPKKIVELTGI 458 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + ++++G T N FD ++++ ++ Sbjct: 459 NDNMVKDSDI----IDKVMPRFLEFVKGTTLVAHNAKFDVGFISKKCEDLNLETD----- 509 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + K+ +D + LD + +R + + N H A+ DA ATA F L Sbjct: 510 ------FSYIDTLEWSKILVDDVKRFNLDTLTKRFNIKLENHHRAVDDANATAELFKKLL 563 Query: 181 HTAAAH 186 +A+ Sbjct: 564 SLVSAN 569 >UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S1A9_FINM2 Length = 1421 Score = 190 bits (483), Expect = 2e-47, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 16/178 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +V D+ETTGL T E+G + + + + + + K E+ Sbjct: 400 REFVVFDIETTGLSNATEKITEIGAVKIVDNKIVD-EFNQLINPEIPIPEKITELTSITN 458 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + E ++ T N FD + + + + Sbjct: 459 EMVKDM----PKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGI---------- 504 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + A + + LD + ++ V + N H A DA AT F + Sbjct: 505 -NPVRTYIDTLAFARALEPHLKNHKLDTLTKKYNVNLFNHHRACDDARATGEVFICMV 561 >UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z9S3_9FIRM Length = 1474 Score = 189 bits (482), Expect = 3e-47, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 18/187 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 + + +V DLETTG + +E+G + V+ G+ + F + E + ++ Sbjct: 405 LNDRYVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDRFSTFVNPEIPIPFRIE--KLTS 462 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + + ++ + + N FD + + + Sbjct: 463 INDEMV----IDAPKIEEILPQFMEFCKDSVMVAHNSDFDMSFIEANCKRQDLE------ 512 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + A + I LD VA+ LG+ + + H A+ DA TA F L Sbjct: 513 -----CDFTVIDTVAMSRYLIIGLGRYKLDNVAKALGIVLDHHHRAVDDAECTALIFLKL 567 Query: 180 RHTAAAH 186 Sbjct: 568 CKMLEGK 574 >UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=A7HNS3_FERNB Length = 1390 Score = 189 bits (481), Expect = 4e-47, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 16/180 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+DLETTGL+ + +E+G + G+ + T + + K++ I G E Sbjct: 382 TYVVLDLETTGLNPRSDEIMEIGAVKTRDGKVID--EFHTFVRPNKLNKKSLNITGITED 439 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ ++++ + N FD T + + F Sbjct: 440 MLKDA----PDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEF--------- 486 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D + L + + LD + + G+ H A+ DA T F L A Sbjct: 487 NPPYIDTLRLSQA-LLRNKIKSFSLDKLVDHFGLGAFQHHRALDDARVTVNVFWKLIELA 545 >UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia RepID=DPO3_THETN Length = 1401 Score = 188 bits (478), Expect = 9e-47, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 62/183 (33%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 + +V D+ETTGL +E+G + + + + F + + ++ ++ G E Sbjct: 387 EFVVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISS--FITKLTGIDE 444 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + ++ +G N FD + + + + Sbjct: 445 SMVKDA----PLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTV---- 496 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + LD +AE V +++ H A+ DA ATA F + Sbjct: 497 -------LDTLELSRHLYQDLKNYKLDTLAEFFEVKLLHHHRAVEDAKATAEIFIKMLEK 549 Query: 183 AAA 185 Sbjct: 550 LQE 552 >UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae RepID=C7NEP7_LEPBD Length = 1459 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 18/179 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 +V D+ETTG D +E+G + + E + F + E K E+ + Sbjct: 425 YVVFDIETTGFDPFNDKIIEIGAVKMRGREVIGEFSEFVNPE--IPIPQKITELTTITDE 482 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ ++ G T N FD + + + G + Sbjct: 483 MVANA----EKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQ---------KTIDQGLEY 529 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A + + GL + + G+ + H A+ DA ATA F + Sbjct: 530 SPSVIDTLPLA--RTLLPELRGYGLANLVKYFGITLETHHRAVDDAKATAEVFQKFLNM 586 >UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia RepID=DPO3_CLOPE Length = 1449 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 20/182 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D+ETTG +E+G + + GE + V+ K E+ + Sbjct: 434 EYVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTF-VDPKVNIPYKITELTSITQN 492 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + +++ + N AFD + + + + Sbjct: 493 MVNG----QPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMG--------KTLK 540 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC----FDML 179 + + + + + L+ VA+ LG+ + N H A+ DA ATA F + Sbjct: 541 NPVMDTVP---LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597 Query: 180 RH 181 + Sbjct: 598 KE 599 >UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM Length = 1415 Score = 186 bits (472), Expect = 5e-46, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 18/178 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYYE 62 +V D+ETTGL E+G + + G + P+ + E+ Sbjct: 400 TYVVFDIETTGLSPIRDKITEIGAVKIVDGIIT--ERFSQLINPQMLIPEKVQELTRITN 457 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E + D+++ + N FD+ + R + F Sbjct: 458 ALVENE----PTIEEVAPKFYDFIKDSVLVAHNAKFDTAFIRRVFKENDLDFIN------ 507 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + + T+ L + ++ GV +V H A+ DA ATA F L Sbjct: 508 -----PILDTLSFARATVKDTKKFNLATLCKKFGVSLVGAHRAVNDAEATAHLFIKLI 560 >UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria RepID=C9S0C0_GEOSY Length = 1444 Score = 186 bits (472), Expect = 5e-46, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 17/186 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 + +V D+ETTGL +E+ + V GE + F+ + ME+ G Sbjct: 426 EETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSV--TTMELTGI 483 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + DW T N +FD + G Sbjct: 484 TDEMVKDA----PKPDEVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGR-------G 532 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ + + L + + L+ + ++ + + H AI DA AT L Sbjct: 533 KIANPVIDTLE---LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLL 589 Query: 181 HTAAAH 186 A Sbjct: 590 KEAEER 595 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 185 bits (470), Expect = 8e-46, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 16/181 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V+D ETTGLD +E+G + + G+ + H ++ ++ EI G Sbjct: 355 NATFVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVD-EYHTLIKPSREISRRSSEITGIT 413 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L + + E +L + N FD + + +G Sbjct: 414 QEMLENK----RSIEEVLPEFLGFLENSIIVAHNANFDYRFLR--------LWIKKVMGL 461 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 W D A A L + LD+V E+LG+ H A+ DA TA F Sbjct: 462 DWERPYIDTLALAKSLLKM---RSYSLDSVVEKLGLGPFRHHRALDDARVTAQVFLRFVE 518 Query: 182 T 182 Sbjct: 519 M 519 >UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=Clostridiales RepID=C7GFY3_9FIRM Length = 697 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 + +V DLETTG D +E+G + V GE F + E + E+ Sbjct: 471 LDDTYVVFDLETTGFSPDKNKIIEIGAVKVVHGEITERFSTFVNPEVPIPYRIE--ELTS 528 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + + ++ N FD + + + + Sbjct: 529 IRDDMV----IDAPKIETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIE------ 578 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + A ++ + LD VA+ LGV + N H A+ DA TA F Sbjct: 579 -----KEFTIIDTVALARILLPQLNRFKLDTVAKALGVSLENHHRAVDDAGCTAEIFVKF 633 Query: 180 RHTA 183 Sbjct: 634 VKML 637 >UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWI2_ALIAD Length = 1440 Score = 184 bits (468), Expect = 1e-45, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 15/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D ETTGL+ +E+ + V G+ + ++ + DPK +E+ G Sbjct: 426 EYVVFDTETTGLNAREDTLIEIAAVKVKAGQIVDTYA-TLIDPERSLDPKIVELTGITNE 484 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + A + + RG N FD + + + W Sbjct: 485 MVAG----QPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDP--------W 532 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D A ++ + L + ++ V +VN H A+ D+ ATA F + A Sbjct: 533 EQPVIDT--LALARVLYPGEKNYKLKTLTQKFSVDLVNHHRALADSEATAKVFVHMLKDA 590 Query: 184 AAH 186 A Sbjct: 591 KAR 593 >UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A6Z2_ALHEH Length = 714 Score = 183 bits (465), Expect = 3e-45, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 17/183 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGYYE 62 +V D E TGL+ + + + + V G L + P ++ +G + Sbjct: 509 FVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINPGRPIPPGSVRFHGITD 568 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + V + + ++ N AFD ++ + + F + + Sbjct: 569 DDVQDK----PPIEVVLPQFKSFVGDAVLVAHNAAFDMKFISMKEREAGVRFDNPVLDTL 624 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L D E LDA+ +R G+ + RH+A+GD ATA + Sbjct: 625 LLSALLD-----------GDEEDHSLDALCDRYGIAITGRHTALGDTLATAELLVRIIER 673 Query: 183 AAA 185 A Sbjct: 674 LEA 676 >UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus RepID=C7RGM9_ANAPD Length = 1365 Score = 182 bits (463), Expect = 4e-45, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 57/178 (32%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V DLETTGL E+G V+ G+ + V K +EI G Sbjct: 349 FVVFDLETTGLSRYKDRITEIGACRVEGGKITEIY-NELVNPEMVIPEKIIEITGITNEM 407 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + D+ + + G N FD V + F + Sbjct: 408 V----KDCPTIEEVLPGFLDFCKDSILVGQNTDFDVGFVRENCHRMGLDF---------N 454 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D A + LD +A +L +P N H A DA ATA F + Sbjct: 455 PIYLDTLPMARA--LFSDMKKFSLDKIARKLEIPAFNHHRASDDARATAQIFIKMFKM 510 >UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI24_RHOM4 Length = 565 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 16/179 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VVD ETTG +E+ + V G + + + P + G Sbjct: 8 FVVVDTETTGSGPA-DRIIELAAVRVQGGRIVERFA-TLINPGRSVPPFITRLTGITTAM 65 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + D+L N AFD ++ + + + Sbjct: 66 L----VGRPSADEVLPDFLDFLGDGVLVAHNLAFDRKMLEAELQRIGLAWPGN------- 114 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + +GLD + +PV NRH A+GDA ATA L A Sbjct: 115 ---PALCTLRLARRLLPGLPAKGLDGLIRFYQIPVENRHRALGDAEATAHVLLRLLEEA 170 >UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes RepID=Q67P96_SYMTH Length = 1475 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 17/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 + +V+D+ETTG +E+G + GE + F + + P+ ++ Sbjct: 453 EFVVLDIETTGFSPIGDDIIELGAVRCRGGEIVDSFQSFVRPTKPVP--PEVQKLTNITP 510 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + A A ++ N FD + + Sbjct: 511 DMLEGA----PEAAEALRAFFQFVGDAIVVAHNAQFDYSFLR-------YHRQKYLGEEF 559 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L + + L A+ + L VP+V+ H A DA A L Sbjct: 560 ANPVLDT---LTLARAVLPHMRSHSLAALTKELQVPLVDHHRADADAKTAAMVLMKLLER 616 Query: 183 AAA 185 A Sbjct: 617 AEG 619 >UniRef50_A0M2M5 Exonuclease family protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M2M5_GRAFK Length = 223 Score = 179 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 75/186 (40%), Gaps = 14/186 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + IV D ETTG +YD + +G + ++ + +P+ ++I+G Sbjct: 38 RFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFLEQKKFNPETVKIHGI--- 94 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E + A + +++ + + FD ++ + +P ++ Sbjct: 95 -IQNEKFEKLSELEALKKFLSYIQNSVLVAHHAGFDMKMINKALSRNGLP-------KLK 146 Query: 124 HHRLADLAAYAAGKLN---IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L Y ++ ID ++ LD +AE + +++RH+A GDA TA F L Sbjct: 147 NKVLDTSILYKKTRIATNFIDRDKIYSLDEIAEAYNIDLIDRHTASGDAYITALIFMKLL 206 Query: 181 HTAAAH 186 + Sbjct: 207 SRLKKN 212 >UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJN1_9PROT Length = 735 Score = 179 bits (455), Expect = 4e-44, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAAD-PKAMEINGYY 61 V D ETTG++ +++G + + G L + P+ + I+G Sbjct: 544 TYTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRIHGIS 603 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + V + D+ N AFD + + + F Sbjct: 604 DDMV----RGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAF------- 652 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L L + E LD++AERLG+ + +RH+A+GDA ATA F + Sbjct: 653 -SQPVLDTLL---LSGVLHPNQESHQLDSIAERLGIGIEDRHNALGDACATAEVFLKMLP 708 Query: 182 TAAA 185 A Sbjct: 709 LLAQ 712 >UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI21_CORK4 Length = 616 Score = 178 bits (452), Expect = 8e-44, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 15/186 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGY 60 +VVDLETTGL +E+G + + GE + F + +L P I G Sbjct: 31 NTTFVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISRFSTFVDPGRLIP--PLITNITGI 88 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + A A + ++ RG N FD + + + + Sbjct: 89 SDDDVNGA----PKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHITWP----- 139 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 A L+ L ++A H A+ DA AT F L Sbjct: 140 ---QPTHLCTLVLARTMLDRCAVGSFKLSSLARHFHATTTPTHRALDDALATVTVFHGLL 196 Query: 181 HTAAAH 186 +H Sbjct: 197 EELGSH 202 >UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MZX4_9GAMM Length = 738 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + ++VD+ETTG + EVG++ V GE + + + + G Sbjct: 570 EQPYVIVDVETTGGRKEQHRVTEVGMVKVLNGEIVD-EWQSLINPMRHIPQSITRLTGIS 628 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E+ ++ G+ F N FD + F Sbjct: 629 NEMVSNA----PVFDDVADEIAEFCAGSVFVAHNVNFDYGFFRSEFERLGRRF------- 677 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + L + L + + N H A+ DA A A F +++ Sbjct: 678 ----HAPKLCTVQMSRKYLPGHSSYSLGKLCAALDIDLENHHRALDDAKAAAHVFRLIQE 733 Query: 182 TAAAH 186 Sbjct: 734 KRQTS 738 >UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=17 Tax=Fusobacterium RepID=A5TTA5_FUSNP Length = 1454 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 15/177 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V D+ETTGL+ T +E+G + + G + + + EI Sbjct: 424 EEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQL-INPGRPIPYHITEITSIT 482 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E + G+ D++ N FD + R Y + Sbjct: 483 DEQVANE----PKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKY--------LNI 530 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + D A + + GL + + LG+ + H A+ D+ ATA F + Sbjct: 531 DLQSSVIDTLQMA--RDLFPDLKKYGLGDLNKTLGLALEKHHRAVDDSQATANMFII 585 >UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive type) n=3 Tax=Lactobacillus delbrueckii RepID=Q049V0_LACDB Length = 1411 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 17/179 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 ++ ++ D+ETTGL +E+G + + GE + F I + + Sbjct: 390 QEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHP--LSETTINLTSIT 447 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + AV + D+ + G N FD V P Sbjct: 448 DEMVQAA----DDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYP-------E 496 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L +L LD++ + V + + H A DA AT + L Sbjct: 497 ISQPVVDTLE---VSRLLHPEQSRHTLDSLCRKYNVALEHHHRANQDAEATGYLMFKLL 552 >UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha subunit (Fragment) n=1 Tax=Oribacterium sinus F0268 RepID=C2KW36_9FIRM Length = 821 Score = 176 bits (448), Expect = 3e-43, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 16/178 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 ++ +V DLETTG D +E+G + ++ G+ + + V + ++ Sbjct: 514 LSSTTVVFDLETTGFDPRVNHIIEIGAVKIENGKIIDR-MDVFVNPGVPIPFRITQLTSI 572 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + D+ + N FD V+ + ++PFS Sbjct: 573 DDSMVMDAKG----IEEVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIPFSA---- 624 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + A +L + LD VA+ L + +++ H A+ DA ATA + Sbjct: 625 -------PVIDTVALSRLLLPRLNRFKLDTVAKELKIELLHHHRAVDDAEATARIYLK 675 >UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA Length = 412 Score = 175 bits (446), Expect = 4e-43, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYY 61 +V D ETTGL V + + + G L + P +++ +G Sbjct: 218 TFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRPIPAESIRYHGIT 277 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + V + + ++ N AFD + + + F Sbjct: 278 DDMV----VDKPPAGVVLPQFRSYVADAVLVAHNAAFDLKFLRMREKDMGIRFD------ 327 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L P LD + +R G+ + +RH+A+GDA TA Sbjct: 328 -----IPVLDTMILSNFLDGPDAGHSLDDICDRYGIEITDRHTALGDAMVTAAVLLRQIE 382 Query: 182 TAAAH 186 Sbjct: 383 ALEGR 387 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 175 bits (444), Expect = 8e-43, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 64/185 (34%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYY 61 V D ETTGL+ +++G + V G+ L + ++ ++G Sbjct: 543 TYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGIT 602 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + N AFD + + + F Sbjct: 603 ADMLAG----QPVIEAVLPSFHAFAADTVLVAHNAAFDMRFLQLKEDLTGLRF------- 651 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L L A + + L+A+AERLG+ VV RH+A+GDA TA F L Sbjct: 652 -DQPVLDTLLLSA---VIHPNQDSHRLEAIAERLGITVVGRHTALGDAMVTAEVFLKLVP 707 Query: 182 TAAAH 186 A Sbjct: 708 LLAEK 712 >UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB Length = 688 Score = 175 bits (444), Expect = 9e-43, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 62/186 (33%), Gaps = 19/186 (10%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +V D ETTGL V++ L + G L + V P + ++ + Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRVHHISD 553 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A D+ +G N FD + + F Sbjct: 554 DMVQDA----PDIIEAGRRFHDFCQGAVLVAHNAPFDLAFLRLKEKVIGRRF-------- 601 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLR 180 + L + A D + LDA+ ER G +P RH+A+GD ATA F + Sbjct: 602 DNPVLCTVLMSAG---LFDHSGQHTLDALCERFGITIPPEARHTAMGDTVATAEVFVRML 658 Query: 181 HTAAAH 186 A Sbjct: 659 GLLQAK 664 >UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=B4S124_ALTMD Length = 715 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 51/176 (28%), Gaps = 16/176 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A+ +VVD+ETTG + E+G++ + G+ + + + G Sbjct: 540 AQPYVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDRFQ-TLLNPQRRIPSSITRLTGIS 598 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + + F N FD + ++ F Sbjct: 599 DDMVADA----PLFAEVADHIASFTEDAVFVAHNVNFDYGFIKQEFARLEQSFRR----- 649 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L + + + + H A+ DA A A Sbjct: 650 ------PKMCTVREMRRTHPGLSSYSLANLTKHFHIDMEQHHRALSDAKAAAELLK 699 >UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4KA24_THASP Length = 769 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 17/184 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGYYE 62 V D ETTGL+ ++VG + G+ L + + P++ +I+G Sbjct: 579 YTVFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPERPLAPESAKIHGITS 638 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + N AFD + + + F Sbjct: 639 EML----RGQPTIDKVLPAFHAFAADTVLIAHNAAFDMRFLQLKEEQTGLRF-------- 686 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 H + L A + E L+A+AERLG+ +V RH+A+GDA TA F L Sbjct: 687 DHPVIDTLLLSA---VVHPNQESHRLEAIAERLGLTIVGRHTALGDAIVTAEVFLKLIPL 743 Query: 183 AAAH 186 A Sbjct: 744 LAEK 747 >UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli RepID=DPO3_LACSS Length = 1446 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 69/186 (37%), Gaps = 17/186 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGY 60 + + ++ D+ETTGL +E+ + + GE + F I E+ +A ++ Sbjct: 422 SAEYVIFDVETTGLSAVYDSIIELAAVKMRDGEVVASFDEFIDPERPLSA--FTTQLTSI 479 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + A +++ AG N +FD + + Sbjct: 480 TNEMVHGAK----KEAEVLAMFKEFTGDAVLAGHNVSFDMGFLNAGYERNDIDL------ 529 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + L ++ + LD++ +R + + + H A DA +T + L Sbjct: 530 -IDNPVIDTLE---LSRMLHPEYKNHKLDSLTKRYKINLEHHHRANADAESTGYLLYKLE 585 Query: 181 HTAAAH 186 AA + Sbjct: 586 KEAAEN 591 >UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510268 Length = 581 Score = 173 bits (440), Expect = 3e-42, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 12/182 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++VDLETTG + E+G + GE L + + + P + G Sbjct: 30 TFVIVDLETTGTTAGKSEITEIGAVKTRGGEVLGEFQSLVKPEESVISPFVARLTGITHA 89 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ G N FD + + Sbjct: 90 MVDDA----PSIRSVLPSFLEFCVGAVLVAHNAPFDIGFIRSACEKLDYHWP-------- 137 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D + ++ D L +A G V H A+ DA AT + Sbjct: 138 QPTVLDTVTLSRRVVSRDEVRNHKLSTLAAHFGTEVSPDHRALSDAKATGEVLHRVLERF 197 Query: 184 AA 185 Sbjct: 198 GG 199 >UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11UG6_CYTH3 Length = 449 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG +E+ + D + + + G Sbjct: 3 YSIIDIETTGGHASGNRIIEIAIYKFDGEKITDTYQ-TLINPERRIPVFITSLTGIDTEM 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A E+ D+ R + F N FD T V ++ +MP++ Sbjct: 62 VADA----PVFADVAREITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYN--------- 108 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L L + L + LG+ V NRH A GDA AT + L Sbjct: 109 --LPKLCTVRLSRKIFPGLPSYSLGNLCGSLGIDVQNRHRAAGDAEATVRLLNKLL 162 >UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YUT4_NOCDA Length = 595 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 58/183 (31%), Gaps = 18/183 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 +V+DLETTG + EVG + V GE + F + A+ + G + Sbjct: 26 FVVLDLETTGTSASGSRITEVGAVRVRGGEVVGEFATLVNPGTPIPAN--ITLLTGITQS 83 Query: 64 GLYREALTEQQTAVAWGEVQDWLR---GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + +L N FD+ + + + Sbjct: 84 MVA----SAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPG---- 135 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + D A L T L +A GVPV H A+ DA AT L Sbjct: 136 ----YPVVDTLRLARAVLARGETRNHRLATLAAYFGVPVAPNHRALEDARATVGVLHGLV 191 Query: 181 HTA 183 Sbjct: 192 ERL 194 >UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C525 Length = 529 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 13/183 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VVDLETTGL +E+G + G+++ ++ + G Sbjct: 20 NTTFVVVDLETTGLKAKNDHIIEIGAIKTRGGKTIGTFSSF-IDPGMEIPDHITSLTGIT 78 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + T Q + ++ RG+ + N FD + + + + Sbjct: 79 T----ADVETAPQLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWPS----- 129 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A L+ L +A +G P H A+ DA AT L Sbjct: 130 ---PSVVDTLTLARRVLDRSQVGSFKLSQLARYVGSPNRPAHRALDDAIATVDVLHYLME 186 Query: 182 TAA 184 A Sbjct: 187 RLA 189 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 172 bits (438), Expect = 4e-42, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 19/179 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +V+D+ETTGLD +E+ + ++ G V P + G Sbjct: 2 LPQTYVVLDVETTGLDPARDRIIEIAAVRLEGGNITR-QFQTLVNPGRPIPPAIERLTGI 60 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + D R G N FD + + + L Sbjct: 61 SDAMVREA----PPLPEVLPGLLDLFRDAIPVGHNGTFDLAFLNQAL-GHGWHSPLLDT- 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 A ++ LD +++ L + H A+ D TA + L Sbjct: 115 ------------LALSRILFPCLASHRLDYMSKYLTLEATGHHRALDDVLTTARLLENL 161 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 172 bits (438), Expect = 4e-42, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 19/181 (10%) Query: 1 MAKQLIVVDLETTGLDYD--TALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEI 57 M+K+ +VVDLETTG + ++ + V+ GE L F I ++ P E+ Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKR--EIPPFITEL 58 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G E + + V + L+G F N FD + + Sbjct: 59 TGIDESMVKQA----PLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGY----- 109 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + ++ + ++ + + L +A++ + H A DA ATA F Sbjct: 110 --TEIHCPKVDTVE---LAQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAELFL 164 Query: 178 M 178 Sbjct: 165 Q 165 >UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7T3_9FIRM Length = 237 Score = 172 bits (438), Expect = 4e-42, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 16/181 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K + VD+ET+G+ +E+G + V G+++ + + P E+ G Sbjct: 1 MVKDYVCVDIETSGIRVKWDKIIEIGAVKVRDGKAVDTFSEL-INPGLKLSPYITELTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + ++ + G N FD + + + + + F + Sbjct: 60 TDEMLKDK----PFIEEVLPRFIEFAGDDVIMGHNIMFDYSFLKQNAINQKLKFDKMG-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + E GL+ + G+ N H A DA T+ +++L Sbjct: 114 ---------IDTLKIARKTLKGLESRGLEYLCNYYGIADENHHRAFNDAEVTSKLYNVLM 164 Query: 181 H 181 Sbjct: 165 E 165 >UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCD0_PARDP Length = 706 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 66/184 (35%), Gaps = 17/184 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGYYE 62 V D ETTGL+ +++G L + G+ L + + P+++ +G + Sbjct: 516 YTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHP 575 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + A + G N AFD + + + F Sbjct: 576 EMVQG----QPRIAEVLPAFHAYASDTVLVGHNVAFDMRFLQLKEAATGLRF-------- 623 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L L + + L+A+A RLGV + RH+A+ DA TA F L Sbjct: 624 DQPVLDTLLLASIAQ---PHEPSHSLEAIAARLGVEITQRHNALSDALVTAEVFLRLLPL 680 Query: 183 AAAH 186 A Sbjct: 681 LKAR 684 >UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM Length = 1010 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 57/184 (30%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTG+ +E+ + V+ G+ + V P A +NG ++ Sbjct: 24 DYVVFDLETTGISSKYDEVIEISAVKVEAGQ-VTGEFSTLVNPGRKIPPAASRVNGITDK 82 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRV 122 + + G+ + G N FD + R Y Sbjct: 83 MVAGAL----PFSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRKVP------- 131 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + L + + L +AE G+ H A+ D + L Sbjct: 132 DNDYVDTLL---LARAALPELSHHRLVDLAEHYGISAKGAHRALNDCHMNQKVYGKLAEE 188 Query: 183 AAAH 186 A A Sbjct: 189 AEAA 192 >UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C5FA2 Length = 285 Score = 172 bits (436), Expect = 7e-42, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VVD+ETT +E+G + + GE + V K E+ Sbjct: 16 EFVVVDIETTAFSIQKGGRILEIGAVKIKNGEIVD-NFSTLVNPELKIPKKITELTKITN 74 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDS-TIVARQRVTYSMPFSPLTVGR 121 + + +++ + N +FD + T + Sbjct: 75 DMVKDA----PYIGNVLQKFNEFISDSVIVAHNASFDWDRFLKPALATIGIK-------- 122 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 H++ D + + K + L + L VP+ H AI DA ATA CF L+ Sbjct: 123 -SSHKVMDTVSLS--KFTFPDKKKHTLIDLCSYLEVPLEKNHRAIDDAIATAKCFLKLKA 179 Query: 182 TAAAHL 187 A L Sbjct: 180 LNAEKL 185 >UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SPM0_9CAUL Length = 717 Score = 172 bits (436), Expect = 8e-42, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG E+G + + GE + + P E+ G Sbjct: 545 YTVVDIETTGGQSANERVTEIGAVKIRNGEIID-TWQSLINPERRIPPFITELTGISNAM 603 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A + +L+G F N FD ++ + PF Sbjct: 604 VRDA----PRFADIADDFDAFLKGTVFVAHNVNFDYGFLSAEYRRLERPF---------- 649 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 R + A+ + + GL ++ G+ + N H A+ DA A A ++ Sbjct: 650 -RYPKMCTVASMRRHFPGLAAYGLGPLSREFGIELKNHHRALSDAMAAAELLKLINERRL 708 Query: 185 AHL 187 + + Sbjct: 709 SPI 711 >UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma RepID=Q2NJG3_AYWBP Length = 1572 Score = 171 bits (435), Expect = 8e-42, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 16/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG-ESLYFVPHITVEQLAAADPKAMEINGYYE 62 +V DLETTGL +E+ + + G + F I + I + Sbjct: 480 TYVVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGEFQKFI--DPQQKLTKTITNITNITD 537 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L +Q + + + N +FD + + + P Sbjct: 538 EMLQG----QQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEP------ 587 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A + + + + L +A V + + H A+ DA AT+ F + Sbjct: 588 --KPIIDTMALS-QRYFSNLLKYFSLKRLATVFKVKLEDHHRALADATATSEIFIKMIDQ 644 Query: 183 AA 184 A Sbjct: 645 LA 646 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 171 bits (435), Expect = 8e-42, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 18/182 (9%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEIN 58 M + +++DLETTG +++G++ ++ G+ + F E+ P ++ Sbjct: 1 MKDRFVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDRFSSFFNPER--DIPPFVQQLT 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 E+ + A +V D L+ + F N +FD + + +P Sbjct: 59 NITEQMVADA----PSFAEEAAKVADMLQQSYFVAHNVSFDLQFLQEELHMAGLPPFSG- 113 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + ++ E L +A++L + H A DA TA F Sbjct: 114 ---------PTIDTVELARIVFPTAESYKLGDLAKQLHIDHDQPHQADSDAEVTAKLFIA 164 Query: 179 LR 180 L Sbjct: 165 LL 166 >UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrhizobium RepID=A4YW65_BRASO Length = 737 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 16/178 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVD+ETTG E+G + V + + H + K +E+ G Sbjct: 560 EQDYVVVDIETTGSWSSGDRITEIGAVKVRNHQLVE-QWHSLINPQRPIPAKIVELTGIT 618 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ F N FD ++ + F Sbjct: 619 NQMVRDA----PVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRF------- 667 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R L + GL + G+ + + H A+ DA A A +++ Sbjct: 668 ----RFPKLCTCVGMRRRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAAAHLLNLI 721 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M++ +V+DLETTG D A +++G + V+ G ++ V+ + P E+ G Sbjct: 1 MSQSFVVIDLETTGNSPDQGAKMIQIGAVKVE-GCTITDRFSTFVDPGCSIPPFITELTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 ++ + ++ ++ G++ N FD + Q T + Sbjct: 60 ITDKDVEGA----PVFREIATDLLAFMEGSSLVAHNVPFDKGFLEAQLETEGLRLPKCCQ 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ + E L ++ L + H A DA TA F L Sbjct: 116 F----------DTVELSRVLLPTQESYKLSELSSSLDMDHDRPHRADSDAEITAELFIKL 165 Query: 180 RHTAA 184 H Sbjct: 166 LHKLE 170 >UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A5KMD9_9FIRM Length = 279 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 64/183 (34%), Gaps = 18/183 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 M K I DLETTGLD +E+G L V G+ F+ I ++L + P + G Sbjct: 35 MLKSYIAFDLETTGLDPMNNEIIEIGALKVRDGKVSERFMEFIKPQELIS--PAITGLTG 92 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + D+ + G N FD + +PF + Sbjct: 93 ISNDMVA----SARPARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKMG- 147 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + K E + L A+ E + H A DA ATA + L Sbjct: 148 ----------IDTLKIAKKVHPELESKSLSALCEHYKIENKAAHRAYFDALATAKLYQTL 197 Query: 180 RHT 182 H Sbjct: 198 SHY 200 >UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clostridiales RepID=B8FYI4_DESHD Length = 1447 Score = 170 bits (433), Expect = 1e-41, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 V+DLETTG T E+G++ + G+ + F + E+ A + +E+ + Sbjct: 423 TYCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQFGCFVNPEKPIPA--RVVEVTNITD 480 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + ++ +++ G+ N FD + F Sbjct: 481 DMVRDA----ETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFD------- 529 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + K + L +A+ LG+ V H A+ D T F+++ Sbjct: 530 ----YTYLDTLSLAKELFPDYKTYKLGRIAKNLGIKVEVAHRALDDVGTTVKVFNIMVDM 585 Query: 183 A 183 Sbjct: 586 L 586 >UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Proteobacteria RepID=DPO3E_HAEIN Length = 256 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 19/183 (10%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D ETTG++ Y+ +E+G + + HI ++ DP A++++G Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVHGI 67 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + + D++ G N FD + + ++ + Sbjct: 68 TDEMLADK----PEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDI- 122 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + D A + P + LDA+ +RLG+ R H A+ DA A + M Sbjct: 123 ----CLVTDTLQMARQ---MYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 179 LRH 181 + Sbjct: 176 MTG 178 >UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=C5CGL7_KOSOT Length = 1430 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 60/184 (32%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEING 59 M +V DLETTGLD +E+G + + E + F + E+ K I G Sbjct: 415 MNSIYVVFDLETTGLDPSADEIIEIGAVKLKGTEVIGEFSSFVKPER--NLSEKVTRITG 472 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 +R L + + ++ + + N FD V Sbjct: 473 ISDRELEDA----PSLSEVLPKFLEFCKDSVLVAHNATFDYRFVRNAVKQL--------Y 520 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 W D A + L L D V +RL + H A DA TA F L Sbjct: 521 NEDWKLPYIDTLALSKSLLKSKSYSL---DNVVKRLKLGDFEHHRASEDARITAEVFKKL 577 Query: 180 RHTA 183 A Sbjct: 578 LSMA 581 >UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria RepID=B1Y7R5_LEPCP Length = 731 Score = 170 bits (431), Expect = 2e-41, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 64/183 (34%), Gaps = 17/183 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYYE 62 V D ETTGL+ D +++G + G+ + P A + I+G Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQRPIPPAGIPIHGIKP 600 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + N AFD + ++ + F Sbjct: 601 DMVAG----QPTIDHVLPAFHAFAQDTVLVAHNAAFDMRFLQLKQDRTGLVF-------- 648 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L L A + E L+A+AER + VV RH+A+GDA TA F L Sbjct: 649 DQPVLDTLLLSA---VVHPNQESHRLEAIAERFSITVVGRHTALGDAMVTAEVFVRLIPL 705 Query: 183 AAA 185 A Sbjct: 706 LHA 708 >UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gammaproteobacteria RepID=Q21J48_SACD2 Length = 238 Score = 170 bits (431), Expect = 3e-41, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 14/179 (7%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTGL+ +E+G + + + H ++ D A+E++G Sbjct: 4 IVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPEREIDEGAIEVHGITNEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E ++ G N FD + + + Sbjct: 64 LADK----PVFKDIADEFMAFVDGAELVIHNAPFDVGFLNHEFNLLG----RGSTVINDR 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 + D A A K P + LDA+ +R G R H A+ DA A + ++ Sbjct: 116 CSILDTLALARNK---HPGQKNNLDALCKRYGADNSARDLHGALLDAEILADVYLLMTG 171 >UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAB0_9FIRM Length = 225 Score = 169 bits (430), Expect = 3e-41, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 64/180 (35%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ETTGLD + +E+G ++V G F +T E + P + G + Sbjct: 57 YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGRFQTFLTPEPYQSLSPFITNLTGITDS 116 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++D+L G T G N FD + G Sbjct: 117 DL----VGAPTFREILPRLRDFLGGYTLVGHNVNFDINFL--------YDRIYRETGEHL 164 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 ++ D K + L+A+ + G+ N H A+ D T D L Sbjct: 165 NNPYLDTK--KLAKTVVPGLSHYSLEALCKHFGI-AGNHHRAVDDCELTEKVLDALWRLK 221 >UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3L4_MAGSM Length = 237 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 64/188 (34%), Gaps = 17/188 (9%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++LIV+D ETTG D +E+G + + V A +++G Sbjct: 2 ERLIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGD-ERQWYVNPEREIPADATKVHGIT 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + E ++ ++ N FD + + + Sbjct: 61 DADVAN----SPKFKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRLNKRL------V 110 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + R D A K P LDA+ +RLGV R H A+ DA A + L Sbjct: 111 MPMERAIDTIPLARRKF---PGSTVNLDALCKRLGVDNSGRTFHGALLDAHLLAEVYVEL 167 Query: 180 RHTAAAHL 187 L Sbjct: 168 MGGNQFSL 175 >UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cellular organisms RepID=Q1LGD6_RALME Length = 530 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 17/185 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ VDLETTG D E+G++ V + + + L + P + G + Sbjct: 33 RPIVFVDLETTGADAQRDRITEIGVVEVGPDGIQEWDTLV--DPLTSIPPFVQGLTGITD 90 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A+ + + L+G F N FD + + + F Sbjct: 91 EMV----RGQPTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTF-------- 138 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R L + E GLDA+ R G+ RH A+ DA + + Sbjct: 139 ---RADVLCTLRLSRSLFPSVERHGLDALIARFGLTPKGRHRALADAELLWQFWQKIHEI 195 Query: 183 AAAHL 187 + L Sbjct: 196 YSVDL 200 >UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like domain n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B5Z3_METEA Length = 754 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 64/184 (34%), Gaps = 18/184 (9%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V+D ETTGL + +EVG + + G + + I G Sbjct: 542 ERFVVIDFETTGLSPNNGDRVIEVGAVEIVDGRIGRRFQSL-ANPGFPVSARITAITGIS 600 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + A EV ++ G T N FD + + Sbjct: 601 NAML----VDAPPLAEVIREVSAFIEGATLVAHNAGFDRRFLQAEMERLG---------- 646 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 +W R L GK L +AE GV + + H A+ DA ATA F ++R Sbjct: 647 LWDDREM-LCTMRLGKRAYPGLGSYKLAFLAEHAGVALPDAMHRALADAMATAELFLVMR 705 Query: 181 HTAA 184 A Sbjct: 706 EREA 709 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 168 bits (427), Expect = 6e-41, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 57/178 (32%), Gaps = 16/178 (8%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+DLETTG +E+G++ ++ E + P + G + Sbjct: 3 RFVVIDLETTGHAPSKNDKIIEIGMVIIEGDEIIDTKTTF-FNPGQPIPPFITNLTGISD 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + ++ L + N FD + + + R+ Sbjct: 62 DDVADA----PLFTEKALSIKSILEDSYIIAHNVNFDLGFLNAELKENGID-------RL 110 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L + ++ L +++ + + H A+ DA TA F L Sbjct: 111 HNQVLDTVE---LSRILFPTAPGYKLSQLSDHFNLQHDDPHRALSDAYVTAKLFQKLM 165 >UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VLC1_9ACTO Length = 615 Score = 168 bits (426), Expect = 8e-41, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 59/182 (32%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 +V DLETTG TA E G + V GE + T+ + + P + G + Sbjct: 51 TFVVFDLETTGTGPTTAEITEFGAVKVRGGEVV--AEFATLVRASTGIPPLITVLTGITD 108 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L T A ++++G N FD + + P Sbjct: 109 AMLA----TAPPLAEVLPAFLEFIQGTVLVAHNAGFDLSFLKAACERVGYP------VPT 158 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 W H D A A + D + L ++A H A+ DA AT L Sbjct: 159 WEH--LDTARLARRIVTRDESPNNKLSSLARLFRARTEPCHRALADARATVDVLHGLFER 216 Query: 183 AA 184 Sbjct: 217 LG 218 >UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Betaproteobacteria RepID=Q0AE35_NITEC Length = 234 Score = 168 bits (426), Expect = 9e-41, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 15/187 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D ETTGLD VE+ + V S H + +D A+ ++G Sbjct: 2 RYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNPGRESDEGALRVHGLSR 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + E +++ N FD + R+ L Sbjct: 62 EFLQDK----PAFQEICSEFLEFIEDAEILIHNAPFDVGFINRELG-----LIRLEPMHN 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLR 180 + ++ D A + P + LDA+ ER + +R H A+ DA A + + Sbjct: 113 YCLQIVDTLMLAK---ELHPGKRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMT 169 Query: 181 HTAAAHL 187 + L Sbjct: 170 RGQESLL 176 >UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15TC4_PSEA6 Length = 769 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 16/181 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VVD+ETTG E+G + V + + + + G Sbjct: 602 QPYVVVDVETTGGCKPGHRITEIGAVKVIDSKVVD-SWSSLINPERRVPHFITRLTGISN 660 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +++ +++ F N FD + FS Sbjct: 661 DMVEDA----PLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAFS------- 709 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L + + L +++ G+ + N H A+ DA A A M+ Sbjct: 710 ----MPKLCTVREMRKYYPGSPSYSLGKLSKEYGLSLDNHHRALCDAQAAAELLIMVNEK 765 Query: 183 A 183 Sbjct: 766 K 766 >UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM31_9BACT Length = 1428 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 60/180 (33%), Gaps = 18/180 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTGL+ +E+G + + E L + + E+ +A + G E Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIKMKGSEVLGTYSTFVKPEKELSAM--ITSLTGITED 475 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + E + G N +FD V + G W Sbjct: 476 MLSEA----RPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKH--------FGGDW 523 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D A A ++ LD V +RL + + H A DA TA A Sbjct: 524 EMPCIDTLALAKSLF---RSKSYSLDNVVKRLKLGHFDHHRAFEDAKVTAEVLKKFVQLA 580 >UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenibacillus RepID=C6D2T0_PAESJ Length = 1437 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 17/186 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 + IV D+ETTGL +E+ + + G+ + F I + ++ Sbjct: 418 TAEYIVFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYH--IQQLTNI 475 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + E D++ + N FD + + MP Sbjct: 476 NDEMVKDA----PELEPKLREFIDFIGDSILVAHNARFDIGFIQANLKSIGMP------- 524 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V + L L + + L+ ++ + V + N H A+ D+ A L Sbjct: 525 DVTNPVLDTLE---LARFLHPTMKNHRLNTLSAKYKVSLDNHHRAVDDSVALGGVLFGLI 581 Query: 181 HTAAAH 186 + AA Sbjct: 582 NDAAER 587 >UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (Modular protein) n=2 Tax=Burkholderiales RepID=B3R8V7_CUPTR Length = 532 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 17/179 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++ ++ VDLETTG D E+G++ V + + ++ + P + G Sbjct: 29 LSRPIVFVDLETTGADAQRDRITEIGVVEVGPDGIVEWETL--LDPGMSIPPFIQRMTGI 86 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + L+G F N FD + + F Sbjct: 87 SDDMV----RGQPTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTF------ 136 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R L + E GLDA+ R G+ RH A+ DA + + Sbjct: 137 -----RADVLCTVRLSRSLFPSVERHGLDALIARFGLTPKGRHRALADAELLWQFWQKI 190 >UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gammaproteobacteria RepID=Q1QW65_CHRSD Length = 253 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 11/184 (5%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG+D +E+G + V H + DP+A+E++G Sbjct: 4 IVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGITNER 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV-W 123 + E A +++RG N AFD + + +G V Sbjct: 64 VADE----PVFADIADAFWEYIRGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPVAD 119 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 + + D A A + P + LDA+ +R G+ R H A+ DA + + + Sbjct: 120 YCSVLDTLAMA---RKLHPGQRNNLDALCKRYGIDNGRRVLHGALLDAEILSDVYLTMTG 176 Query: 182 TAAA 185 A Sbjct: 177 GQTA 180 >UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAB9_9FIRM Length = 525 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 21/186 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ + D+ETTGLD +EVG + + G ++ + V +A IN Sbjct: 50 KRYVAFDVETTGLDSKKDRIIEVGAILFENGHTVETYSSL-VNPEVKISKEATTINHITN 108 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGN-----TFAGSNPAFDSTIVARQRVTYSMPFSPL 117 + + + E+ +L N FD + +++ + L Sbjct: 109 GMVKKA----PTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQIL 164 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L + + I VA+ + H AI DA Sbjct: 165 C-----------LDTLSLSRKIIPGLSNYKQTTVAKHFNIKNKQEHRAISDAEVCGEILW 213 Query: 178 MLRHTA 183 L Sbjct: 214 KLLSIK 219 >UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acidithiobacillus RepID=B5EMD9_ACIF5 Length = 248 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA + +V+D ETTG+D+ +E+G + + + ++DP+A+ I+G Sbjct: 1 MAVRQVVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQRSSDPEALRIHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + A ++L N FD + + Sbjct: 61 LTDEFLQD----QPGFAEVADAFLEFLGDAELIIHNAPFDLGFLNHELQLAGKAPL---- 112 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + D A A + P + L+++ R V +R H A+ D A + Sbjct: 113 ----RQAVMDTLADARRR---HPGQKNDLNSLCRRYSVENSHRELHGALLDTRILAEVYL 165 Query: 178 MLRH 181 + Sbjct: 166 AMTG 169 >UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCE6_BRAFD Length = 551 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 58/184 (31%), Gaps = 15/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 L+VVDLETTG D E+G + V GE L F + E+ A + + G + Sbjct: 20 TLVVVDLETTGTDPAADAITEIGAVKVRGGEVLGEFRTFVDPERPIPAYIAS--LTGITD 77 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 D+ N FD ++ Q + + Sbjct: 78 ----AAVAEAPSIRTVLPMFLDFAGDAALVAHNARFDIGFLSAQAAACEITWP------- 126 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R+ D A A D L +A +G + H A+ DA AT + Sbjct: 127 -RPRVLDTLALARTVFRRDEVRDHRLSTLARHVGAGITPDHRALSDARATVDVLHAIIER 185 Query: 183 AAAH 186 Sbjct: 186 LGPS 189 >UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEU3_ACHLI Length = 1504 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V D+ETTG + +E+ V G + + I + Sbjct: 412 YTVFDIETTGFSFTRDKIIEIAAYKVRGGFIAER-FEVLINPEEQLSETTKRITNITDEM 470 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM---PFSPLTVGR 121 + E ++++G N +FD + + + PF+ + Sbjct: 471 VENEK----TIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLN 526 Query: 122 VWHHRLADLAAYAAGKLNI-------DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + + + L A+ + V + H AI DA ATA Sbjct: 527 IARYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEAHHRAIYDAYATAE 586 Query: 175 CFDMLRH 181 F + Sbjct: 587 VFLNMLQ 593 >UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacteria RepID=A9KMW9_CLOPH Length = 1527 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 +V D+ETTG +E+G + + G + F I E ++ + Sbjct: 496 TCVVFDIETTGFSSVKDKIIEIGAVKIQHGTIVDRFSTFINPEVPIPYH--IQKLTSITD 553 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + E + G N +FD + ++ ++P + +V Sbjct: 554 EMV----IGSRTIEEILPEFLSFCEGCYLVAHNASFDIGFITKKAEFLNIPLTVTSV--- 606 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ ++ LD VA+ L + + N H A+ DA TA + Sbjct: 607 --------DTVGLARVLLNHLNNFKLDTVAKALSISLENHHRAVDDAGCTAEIYLKFLEM 658 Query: 183 A 183 Sbjct: 659 L 659 >UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus RepID=Q1IXC1_DEIGD Length = 180 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 23/189 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-------AADPKAMEI 57 ++V DLETTGL + VE+G L V G + T+ + +A + Sbjct: 3 VVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQRV 62 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + + E D++ + A N FDS+ + + ++P Sbjct: 63 HGISDAMVQDA----PELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGLVWAPP 118 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFC 175 A+ + LD +A+RLG+ RH ++GD TA Sbjct: 119 ----------AEYCTVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRHRSLGDVQVTAEA 168 Query: 176 FDMLRHTAA 184 F L + Sbjct: 169 FVRLMERLS 177 >UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK59_9BACT Length = 228 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 70/180 (38%), Gaps = 14/180 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 V+D ETTGLD + A + V + V + + F + ++++ + Sbjct: 41 QNAVFSVIDTETTGLDLNDARIINVAAVKVQNFKIIDFYNSF-INPETEIPKESIQWHNI 99 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + +++ + G + FD ++ ++ + Sbjct: 100 TDEMVADK----PTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMM-------DSFSC 148 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ ++ L + Y+ + D E LD + + V RH+A+GDA ATA F + Sbjct: 149 QINNNWLDTMLIYSHAIIKKD--ERYSLDYLLDLYNVTCNGRHTALGDALATAEVFTKMI 206 >UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHD8_9FIRM Length = 269 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 17/187 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 + I+ D ETTG + + + ++ GE + + P+A+ ++ G Sbjct: 77 RYIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSIPQAVCDLTGIT 136 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + D++ + N FD + + + T Sbjct: 137 DDMVADKCG----ICSVLSDFLDFIGDSVLVAHNAEFDLAFLN-------IKLNWYTQTE 185 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD-MLR 180 +++ + Y G+ LD + V RH+A+GD+ TA F L+ Sbjct: 186 IYNPVIDT---YKLGRALYPQLLSHDLDTLIRHHRVKERPRHTALGDSLMTAEIFLDYLK 242 Query: 181 HTAAAHL 187 + Sbjct: 243 KLEKEEI 249 >UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0N2_9BACE Length = 1390 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 21/187 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 +++ D+ETTGLD + +E+G + + GE F ++ + + +E+ + Sbjct: 368 EVVCFDIETTGLDNRRDVIIEIGAVILRNGEIAETFDTFVSPGRP--LSREIVELTSITD 425 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A ++ A N FD +A Y +PF + Sbjct: 426 KMLEGA----PSQEEAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTS---- 477 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC---FDML 179 + + + LD VAE L +P H A DA A+ F + Sbjct: 478 -------IDTLILAQNLLPDLGKYKLDIVAEHLRLPPFKHHRADADAGMVAYMLVPFFKM 530 Query: 180 RHTAAAH 186 H Sbjct: 531 LEDLGIH 537 >UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0FNH3_9FIRM Length = 228 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 51/181 (28%), Gaps = 18/181 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 ++ DLETTG +E+ + V +G+ + F + ++ A +N Sbjct: 15 PDYVLFDLETTGTSCIYDEVIEISAVKVRSGKVVEEFSQLVNPKRPIPY--AASMVNHIS 72 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVG 120 + + E E + + G N FD + R Sbjct: 73 DEMVANE----PDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTNDYV 128 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 KL L +AE G+ H A+ D F+ L Sbjct: 129 ----------DTLRVAKLCFPEWRHRRLSDLAEHYGISTRGAHRALTDCKMNQQVFEYLA 178 Query: 181 H 181 Sbjct: 179 K 179 >UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C3RL58_9MOLU Length = 1440 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 17/180 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + DLETTGL E G + + GE + + V + + + Sbjct: 402 TYVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDRLQMF-VNPGKSISSRITNLTSITND 460 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E + ++ N FD + +MP + Sbjct: 461 MVRNE----PTIDALLPRIIEFFDDCILVAHNANFDIGFLNENLRRNNMP-------EIT 509 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRH 181 + + + A + + P + L V V + H A DA F+M+ H Sbjct: 510 NPIID---SLALARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMMLH 566 >UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q83YZ1_PEWBP Length = 1492 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 20/188 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ETTG + + + + G+ + F I + + + Sbjct: 405 YVVLDIETTGFSKTRDRIISIAAVKIQNGKIIEYFDELINPGKDIKISNLIQRLTNISDE 464 Query: 64 GLYREALTEQQTAVAWGEVQDWLRG---NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + D++R N +FD + + + L Sbjct: 465 ILLNK----PHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLP-- 518 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAFCFD 177 + D A N + L+ + + + + H+A+ DA ATA F Sbjct: 519 ------VIDTLTLAQKYFNKI-LKYFSLEKIVKSFKIKLDSEGQYHNALFDARATALIFL 571 Query: 178 MLRHTAAA 185 + A Sbjct: 572 EMLEQLEA 579 >UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gammaproteobacteria RepID=Q5ZVQ6_LEGPH Length = 251 Score = 166 bits (421), Expect = 4e-40, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 15/183 (8%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTG+ + +E+G + + + HI + D A ++G Sbjct: 22 VILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTEF 81 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E ++ G+ N FD + + + + Sbjct: 82 LQDK----PLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLED-----Y 132 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R+ D A K P + LDA+ +R + NR H A+ DA A+ + + Sbjct: 133 CRILDTLILAREK---HPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGG 189 Query: 183 AAA 185 ++ Sbjct: 190 QSS 192 >UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit family protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FXM2_9RHIZ Length = 466 Score = 166 bits (421), Expect = 4e-40, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHIT-VEQLAAADPKAMEINGYYER 63 V D ETTGL V++G + + G+ + T V+ + +I+G ++ Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASSKIHGITDK 333 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + A A ++ + + N FD + + R + F Sbjct: 334 MV----MGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAF--------D 381 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCFDMLRH 181 H + + A + TE LD V ERLG+ + +RH+A+GDA TA + Sbjct: 382 HPIVDTVLVSA---IIFGTTERHMLDVVCERLGIRIEKKDRHTALGDARVTAEAMKRMLP 438 Query: 182 TAAAH 186 A Sbjct: 439 LLEAR 443 >UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CX37_DEIDV Length = 202 Score = 165 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 23/191 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-------AMEI 57 ++V DLETTGL + VE+G L V G+ + + T+ + A + A + Sbjct: 3 VVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQRV 62 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + E +++ + N FD + Q M ++P Sbjct: 63 HGISNEMV----RSAPTIEEVLPEFLEFVGDSAVVAHNVGFDCGFMRAQARRLGMVWAPA 118 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFC 175 + + L +AERLG+ RH + GD TA Sbjct: 119 G----------EHCTVQLSRRAFPKERAHNLTVLAERLGLNFAPGGRHRSFGDVQVTAHA 168 Query: 176 FDMLRHTAAAH 186 + L A Sbjct: 169 YVRLLELLATA 179 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 165 bits (420), Expect = 5e-40, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 17/178 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYER 63 VVDLETTG D + ++ G + V G+ + T PK ++ + G Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKII--ANFATDVNPNQVVPKQIQSLTGISNT 70 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + +L F N FD +AR+ V P Sbjct: 71 QVQKA----PYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLT------- 119 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + ++ + + L ++E LG+ N H A DA TA +++ Sbjct: 120 ---IPAIDTVELAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQE 174 >UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBV5_LARHH Length = 493 Score = 165 bits (419), Expect = 5e-40, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 20/178 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++VDLETTG E+GL+ V G + + + Q P E+ G + Sbjct: 4 RPYVIVDLETTGGHITRDRITEIGLVEVSHGVTTRWSQLVNPGQPIP--PFIEEMTGISD 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + L G N FD + + + F+ Sbjct: 62 AMVAEA----PPFAELAPALLARLNGKLLIAHNARFDYGFLKNEFRRLGLTFTT------ 111 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDM 178 L + LD++ R G+ V RH A+GDA A + F Sbjct: 112 -----DPLCTVKLSRRLYPQHAKHSLDSLIARHGIDVPPGMRHRALGDAEA-VYVFLQ 163 >UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0B3W0_BRUME Length = 234 Score = 165 bits (419), Expect = 5e-40, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 19/186 (10%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYYER 63 IV D ETTGL+ +E+G + + F I Q P A+ ++G Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINP-QGRQVHPDALAVHGISNE 62 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L L + A E +++ G N FD + + L + Sbjct: 63 QL----LDKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELAR-------LDQAEIT 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 + D A A K P LDA+ +R G+ +R H A+ DA A + L Sbjct: 112 SEHIVDTLALARRK---HPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG 168 Query: 182 TAAAHL 187 L Sbjct: 169 GKQTAL 174 >UniRef50_Q48KX3 DNA polymerase III, epsilon subunit n=35 Tax=Proteobacteria RepID=Q48KX3_PSE14 Length = 259 Score = 165 bits (419), Expect = 6e-40, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 13/179 (7%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG+ D +E+G + + H+ ++ +D A+ ++G Sbjct: 11 IVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITNEF 70 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + A E ++++G N AFD + + H Sbjct: 71 L----VGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQ---H 123 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 + D A + P + LDA+ +R GV R H A+ D+ A + + Sbjct: 124 CSILDTLMMARER---HPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTG 179 >UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alphaproteobacteria RepID=B5ZV55_RHILW Length = 245 Score = 165 bits (419), Expect = 7e-40, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYERG 64 I+ D ETTGLD +E+G + + V HI + P A+ ++G + Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGITDEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A E+ + + N FD + + +P + Sbjct: 64 LKDKK----PFAEVAEEILTFFGDAKWIAHNATFDMGFINAELARIGLP-------PILP 112 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R+ D + A K + P LDA+ R G+ +R H A+ D+ A + + Sbjct: 113 ERVLDTLSMARRKHPMGP---NSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGG 169 Query: 183 AAAHL 187 A Sbjct: 170 RQAAF 174 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 165 bits (418), Expect = 7e-40, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 15/183 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D+ETTGL +E+G + + G + + V + + G + Sbjct: 84 RSFVALDVETTGLRPARHRIIEIGAVRYEDGCCVERFS-VLVNPHRRLPVYIVRLTGIRD 142 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L LT + +L +T G N FD + + G + Sbjct: 143 EDL----LTAPSFVDVAAAFRVFLGESTVIGYNVGFDLDFLNAELRRIGQ-------GPL 191 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L L + + LDA+ +G+ RH A+ DA ATA + L Sbjct: 192 PNPALDVLP---LARALLTANGRYDLDAICRSIGLARGTRHRALPDAEATAVLYLHLVER 248 Query: 183 AAA 185 A Sbjct: 249 AEQ 251 >UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIM3_PETMO Length = 1388 Score = 165 bits (418), Expect = 7e-40, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 57/181 (31%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 + +V DLETTGL+ +E+G + + + + F + + + G Sbjct: 381 EFVVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSKFHRLVKPRKPVS--NFTSNFTGITN 438 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L E + ++ G N FD + Sbjct: 439 QMLEVEK----PIEEVLPQFLSFIEGAVLVAHNAIFDYRFIREWVRRV--------YNEH 486 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A + L + + GL V E L + H A DA TA F L Sbjct: 487 FEQTYIDTVALSKSLLTL---KSYGLAKVVEELKLGSFEHHRAHEDANITALVFLKLIEM 543 Query: 183 A 183 A Sbjct: 544 A 544 >UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=Actinomycetales RepID=Y2191_MYCTU Length = 645 Score = 165 bits (418), Expect = 8e-40, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 52/187 (27%), Gaps = 19/187 (10%) Query: 4 QLIVVDLETTGLDYDT------ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 +VVDLETTG E+G + V G L V + P+ + + Sbjct: 42 TFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVL-GEFATLVNPQHSIPPQIVRL 100 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + ++ + N FD + + + Sbjct: 101 TGITTAMVGNA----PTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWP-- 154 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ A L+ D L A+A V H A+ DA AT Sbjct: 155 ------QPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLH 208 Query: 178 MLRHTAA 184 L Sbjct: 209 ALIERVG 215 >UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MME8_9FIRM Length = 1605 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 18/178 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 +IV D+ETTGL E+G + + E + F + ++ E+ G + Sbjct: 590 DIIVFDIETTGLHPANERITEIGAVKLRNMEIVERFSTFVNPMMPIPSN--ITELTGITD 647 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + VA + + + N FD + + F Sbjct: 648 DMVADA----PTEDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAAARMEKSF-------- 695 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + K + + LD +A+ + + H A+ DA + + Sbjct: 696 DNPVVDT---LSIAKAALKGIKNYKLDTIAKYFKLGDFDHHRAVADAEMLCMIYMHIV 750 >UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococcus faecium DO RepID=UPI0001BCC2A4 Length = 663 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 15/172 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D+ETTGL +E+ + + G + ++ +++ G + Sbjct: 426 TYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEF-IDPGHPLSRTTVDLTGITD- 483 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ + N AFD + Y +P Sbjct: 484 ---GMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIP-------EAA 533 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + L + + GL ++++ GV + H AI DA AT Sbjct: 534 NPVIDTLE---LARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 582 >UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS5_PARDP Length = 659 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 62/185 (33%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D ETTGLD V++ L + G V+ P + ++G + Sbjct: 452 TCVVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITDA 511 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A + N FD + R F Sbjct: 512 MVAGA----PDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHF--------D 559 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLRH 181 + L + A + + LDA+ ERLG +P RH+A+GDA ATA + L Sbjct: 560 NQVLDTVLLSA---MLWGQSAPHSLDALTERLGIVIPPEARHTAMGDARATAEAYLRLIA 616 Query: 182 TAAAH 186 A Sbjct: 617 ALEAK 621 >UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFC5_9ACTN Length = 291 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 14/178 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VVD+ETTGL+ + +E+ + V G V ++ G Sbjct: 127 EYVVVDIETTGLNPNKDEIIELAAIRVRGGRETD-AFQCLVRCGGELSDAIAKLTGLSHS 185 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E L A +++ + N FD + Sbjct: 186 RLMAEGLI---LENALMNFLEFVSDDLIVAHNAEFDIGFIQSACEELDWDDFDNDY---- 238 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L A + + L ++AERL + H A+ D T L Sbjct: 239 ------LDTLALARKKLPQISDHRLSSLAERLHLENRQPHRALSDCRLTHCLLVKLNE 290 >UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Betaproteobacteria RepID=Q21VB4_RHOFD Length = 476 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +++DLETTG + E+ + ++ G+ + V + P + G Sbjct: 1 MLPCYVLLDLETTGGNPVHDRITEIAAVRIENGQEVAR-WSTLVNPGCSISPFIQHLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + L G N FD + + + Sbjct: 60 SNAMVRGA----PGFETVAQHLLALLDGAVLVAHNVRFDHGFLLNELARLDVAL------ 109 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+ L +L + GLDA+ +R G+ + RH A+GD + R Sbjct: 110 -----RVKTLCTVRLSRLLYPQHKGHGLDAIMQRHGIRTLERHRAMGDVEVMQAWLQIAR 164 Query: 181 HTAAA 185 A Sbjct: 165 QEHGA 169 >UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function n=3 Tax=Proteobacteria RepID=Q3IIS2_PSEHT Length = 237 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 14/184 (7%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG+D +E+G + + H+ + ++ +A++++G Sbjct: 1 MARRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRNSEEEAIDVHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E D+++G N FD + + + + Sbjct: 61 ITNEFLRDK----PLFHQIAQEFFDYIKGAELVIHNAPFDIGHMDNEFSLLNQGYPKTAT 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 ++ D A ++ P + LDA+ R V R H A+ D+ A + Sbjct: 117 F----CQVLDTLKMA---RDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYL 169 Query: 178 MLRH 181 + Sbjct: 170 AMTG 173 >UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC6_9FIRM Length = 226 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 16/185 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ DLETTG+ +E+ + V G+ + V A +N + Sbjct: 15 RDYVLYDLETTGISSLYDEVIEISAVKVRNGKIVD-EFSELVNPGRPIPYAASSVNNISD 73 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + E + + AG N FD + R Y Sbjct: 74 KMVENA----RSFEKVLPEFLAFAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDY-- 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + A KL + L +AE G+ H A+ D F+++ Sbjct: 128 --------IDTLAIAKLCFPEWKHRKLSDLAEHYGISTKGAHRALADCRMNQQVFELMAK 179 Query: 182 TAAAH 186 + Sbjct: 180 ESGGT 184 >UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5W2_RUMGN Length = 219 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 16/181 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V DLETTG+ + +E+ + V G + V +A ++NG + Sbjct: 13 PDYTVFDLETTGISANMDDIIEISAVKVKGG-IVQDTFSTLVNPGRHIPAQATKVNGITD 71 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGR 121 + + A E ++ + G N FD + R+ Sbjct: 72 QMVSEA----PLIREAMTEFLRFVGEDILVGHNIQSFDMKFIYREVEELFQE-------T 120 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 V + + L + + + L +AE G+ H A+ D CF+ + Sbjct: 121 VSNDFIDTLYM---ARKCLPELKHHRLTDLAEHFGISSKGAHRALNDCVMNQKCFEEMAK 177 Query: 182 T 182 Sbjct: 178 L 178 >UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostridium tetani RepID=Q895Z5_CLOTE Length = 380 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 16/174 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+DLETTGL T +E+ + +G+ + + + +A EIN Sbjct: 83 EFVVIDLETTGLYPVTDKIIEITAIKYKSGQIVE-KYNTLINPKINIPKRATEINNITNN 141 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E+ +++ N +FD + + + Sbjct: 142 MV----KDSPVIEDVLPELLKFIKEYPLVAHNASFDIKFLNANLALINREIKNVA----- 192 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L + E L + N H A+ D TA + Sbjct: 193 ------IDTLQLSRAMYTFLPNHKLTTIKEHLCISEDNSHRALPDCITTAEIYL 240 >UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A7U0_THEAQ Length = 627 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 21/177 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYER 63 DLETTGLD + +G +++ L + V+ + E++G Sbjct: 443 YTAFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTWE 502 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + +L G+ N AFD + + + Sbjct: 503 MLKDK----PKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRK--------------VGID 544 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L D A L + L+ +AER GVPV+ RH+A+GDA TA + + Sbjct: 545 QPPLVDTLLLAH--LLFPDLKDHRLERLAERFGVPVLGRHTALGDALMTAEVYARMI 599 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 21/177 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYER 63 + +DLET+GLD +E+GL+ + G+ + T+ + P K + G + Sbjct: 4 FVALDLETSGLDCLQDEIIEIGLVKMVDGKEIDS--FSTLIRPKGILPVKIKRLTGIKDH 61 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + ++ G N FD ++ + Sbjct: 62 ELQDA----PKLQEVLPVILQFIADLPLVGHNVKFDYDFLSTAVQ-----------SPLA 106 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L K + L + LG+ + N+H A+ DA A L Sbjct: 107 NPLYDTLE---LSKYLMPGASNHRLGYLCSYLGIDIPNQHRALDDARGAAMLLIHLL 160 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 65/178 (36%), Gaps = 17/178 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 + + +D+ETTGL+ + +++ + E + +++ + PK +E + Sbjct: 23 EFVAIDIETTGLNSEWDEIIQIAGMRFKGEEVV--NQFVSLVKPKGKVPKFIEHLTHISP 80 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L T + +++ + G N FD + + V + Sbjct: 81 QEL----KTAPPIKEVLKDFCNFIGDSILVGHNIGFDFNFLNQFIVDNG-------GFPI 129 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + G++ + T L + G+ ++N H A DA AT F+ L Sbjct: 130 SNMHWDTAE---IGRIYLPFTTDHKLSTLVSFFGIELMNAHQADADALATGKLFNALT 184 >UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FIG6_FLAJ1 Length = 459 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 60/180 (33%), Gaps = 16/180 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +VD+ETTG + + E+ ++ + G+++ V P + G Sbjct: 3 NQEYAIVDIETTGGNASGSRITEIAII-IHDGKNVLDRYETLVNPEQDIPPSIFGLTGIN 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + +V + L F N FD + V Q +S Sbjct: 62 NEMVANA----PIFDDISEKVLEMLTDRIFVAHNVNFDYSFVHHQLEQAGFKWSAKK--- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L A + L + L + + NRH A GDA ATA F +L Sbjct: 115 --------LCTVRAARKIKPGLGSYSLGNLCNSLNISLENRHRAGGDADATAILFSLLLE 166 >UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IIU0_PSEHT Length = 730 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 16/180 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VVDLETTG E+GL+ V G+ + V + G Sbjct: 564 NRIYSVVDLETTGALKGGNKITEIGLVKVQHGKVID-TWTTLVNPQRHIPGFITSLTGIS 622 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + L G+ F N FD + ++ +PF Sbjct: 623 DSMVSNA----PVFADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVPFK------ 672 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L + + L +++ + + + H A+ DA ATA +++ Sbjct: 673 -----MPKLCTVVESRKAFAGLKSYSLGNLSKHFNLNLTSHHRALADATATAQLLLLIQK 727 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 16/180 (8%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V+D+ETTG +++ + ++ G+ + + ++ G Sbjct: 4 QRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITERFSK-YINPNKSIPAFIEQLTGIS 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E Q EV L G F N FD V + V Sbjct: 63 NQMVENE----QPFEAVAEEVFQLLDGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEV-- 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L ++ E L ++E L + H A DA T F + Sbjct: 117 --------LDTVELSRIVFPGFEGYKLTELSEELQLRHDQPHRADSDAEVTGLIFLEILE 168 >UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU82_9GAMM Length = 528 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 16/176 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++++++DLETTG +E+GLL ++ G+ L V+ P ++ G Sbjct: 22 EKMVLLDLETTGGKATHHRIIEIGLLVIEQGKVLERWQSF-VDPETVLPPFIQKLTGIAP 80 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + +L T N FD + + + ++ Sbjct: 81 SMLRGA----PLFSEVAETLLTYLNDRTLVAHNARFDYGFLKNEFQRIGISYNAKP---- 132 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + + + GLD + +R +P+ NRH A+ DA F Sbjct: 133 -------LCSVKFSRSLYPQFKRHGLDQIIKRFQLPIENRHRALDDAEMIQRFFLK 181 >UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rickettsia RepID=DPO3E_RICBR Length = 229 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 14/185 (7%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D ETTGLD VE+G + + H + +A I+G Sbjct: 7 IILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPFEAYRIHGISGEF 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + +++ + N FD + + + + Sbjct: 67 LKDK----PLFHTIADDFLEFIADSKLVIHNAPFDVKFLNHELSLL----KRAEIKLLEL 118 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 D A P LDA+ +R V R H A+ DAA A + L Sbjct: 119 EHAIDTLVMARSMF---PGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTGG 175 Query: 183 AAAHL 187 + Sbjct: 176 RQSAF 180 >UniRef50_C7G8J4 Putative DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8J4_9FIRM Length = 235 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 68/180 (37%), Gaps = 16/180 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+DLE TGL+ T +EVG + V +++ I Q K E+ G E Sbjct: 2 QDYVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDKFGAILC-QNVKIPEKVTELTGITE 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E A + +++ + G N FD + + V ++MP V Sbjct: 61 AMVQGGMEKE----EAMRQFFEFIGEDIIVGQNVIFDYGFLKQWAVNHNMPLERSAV--- 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + + L+++ GV N H A DA T ++ LR Sbjct: 114 --------DTLKLARKFLPKEQKKDLESLCAYFGVKRENAHRAFDDAYETWQIYEALRER 165 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 162 bits (411), Expect = 6e-39, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 18/185 (9%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGY 60 ++ +VVDLETTG ++ + V+ E F + E+ P E+ G Sbjct: 2 QRYVVVDLETTGNSAKKGDRIIQFSAVVVEGREIKTQFTSFVNPEKPVP--PFISELTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + + L + F N FD + ++ P Sbjct: 60 DNGMLEEA----PVFSEIAPRIMEILEDSIFVAHNVLFDLPFLQQELKAAGFPPFRG--- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L ++ L +A+ L + H A DA TA Sbjct: 113 -------PSLDTVEFSRIAFPTLNSYKLGDLADSLSLYHERPHRADSDAFVTAKLLLACM 165 Query: 181 HTAAA 185 A+ Sbjct: 166 EKCAS 170 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 18/185 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 + + +DLETTG+D +EVG + V G F + +D + + G Sbjct: 26 RTFVGLDLETTGVDSRVDRIIEVGAVRVVDGRVADTFESFVNPGCPIPSD--IVHLTGIS 83 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR-VTYSMPFSPLTVG 120 + + + +++ G+ + FD+ + + V Sbjct: 84 DADVAGA----PTIDEVLPRIIEFIGGSPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGVF 139 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L A +P H A DA A + F L Sbjct: 140 ----------DTLPLTRALLPRLPNHRLATAARFFDIPTGRSHRATDDARAVSDLFLALL 189 Query: 181 HTAAA 185 Sbjct: 190 GVLDQ 194 >UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIT4_RHOM4 Length = 616 Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 17/172 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 V D ETTGL + + +G + + G + ++ ++G Sbjct: 422 YTVFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPRRPISLDSVRVHGIQP 481 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + R G N AFD + ++ + F Sbjct: 482 VLLQDK----PPIEEVLPRFYRFARDTVLVGHNVAFDLKFIRQKEKALGLRF-------- 529 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 L + + + GLD +A G+ V RHSA+GDA TA Sbjct: 530 DQPVLDTML---LAAVVDPERQHYGLDELAAAFGIEPVGRHSALGDALITAE 578 >UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISI0_RHOCS Length = 699 Score = 162 bits (410), Expect = 7e-39, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 17/183 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYYE 62 +V D ETTGL+ V + + + G L T+ A P A I+G + Sbjct: 506 YVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGITD 565 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + ++ N AFD + ++ + F Sbjct: 566 AMVAEA----PRAEAVLPPFRAFVGDAVLVAHNAAFDLKFLRLKQRAAGVRFDG------ 615 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + LD +A RLG+ +V+RHSA+GD+ TA F L Sbjct: 616 -----PVLDTMILSRQIQGDHGEHSLDGLAARLGIGLVDRHSAMGDSLMTAAIFLRLMDM 670 Query: 183 AAA 185 Sbjct: 671 LET 673 >UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostridiales RepID=C7H779_9FIRM Length = 1417 Score = 162 bits (410), Expect = 7e-39, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 53/185 (28%), Gaps = 19/185 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 + V D ETTGLD E+G + V GE + F + + PK E+ G Sbjct: 396 EFCVFDTETTGLDPGVEYLTEIGAVIVRNGEVVEEFDTFVKPGKPIT--PKITELTGITN 453 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 + A + G N AFD + + F Sbjct: 454 EMVADA----PGEKEALEAFLRFADGRILVAHNAHAFDIRFLKAAAKRSGISFE------ 503 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D A + + L +P H A D+AA F ++ Sbjct: 504 ---PTYIDTLTMAQA--MYPGLHNYKQGTINKHLELPSYEAHRACEDSAALGRIFCVMLS 558 Query: 182 TAAAH 186 A Sbjct: 559 DLAEK 563 >UniRef50_Q2VYH6 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease n=93 Tax=Bacteria RepID=Q2VYH6_MAGSA Length = 257 Score = 162 bits (410), Expect = 8e-39, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 59/185 (31%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG D VE+G + + V H +A +++G Sbjct: 31 IVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPERDMPEEAFKVHGLSADF 90 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A + +++ N FD + + P + Sbjct: 91 LSDK----PLFAEIVADFLEFIGDVPLVIHNAEFDMRFINAELTRLGFP-------PLPM 139 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R D A + P LDA+ R + +R H A+ D+ A + L Sbjct: 140 SRSIDTVMMARKRF---PGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLIGG 196 Query: 183 AAAHL 187 L Sbjct: 197 RQPGL 201 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 16/170 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D+ETTG + +EV + + G + + ++ + + G + Sbjct: 4 RSFVAIDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRL-IDPGCPVPQRIQHLTGIHP 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + ++ +L N FD + + Sbjct: 63 AMLAGK----PRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSY--- 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 ++ + L +AE LG+P+ + H A DA A Sbjct: 116 --------DTAELARVALPLARNHRLATLAELLGLPLEHHHRAEDDARAC 157 >UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1K0_9GAMM Length = 488 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 16/174 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTG E+ L+ V+ G + + L P + G + + Sbjct: 12 VILDCETTGGRASRDRLTEIALIEVEDGHVVKR-WQTLLNPLRPIPPWITRLTGITDATV 70 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 E+ L G N FD + + + Sbjct: 71 ADA----PTFDEIADELFACLDGKVIVAHNARFDYSFLRQSFQRCGYTLGNK-------- 118 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L + + GLD + ERLG+ + NRH A+ D F+ + Sbjct: 119 ---TLCSVKLSRQLFPEHRSHGLDRIIERLGLTIDNRHRAMADTEVLLAFFEHI 169 >UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0P1Y1_9CLOT Length = 235 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 16/179 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K + DLETTGL D+ +E+G + + G+ + + + + G Sbjct: 2 KDYVAFDLETTGLSPDSDQIIEIGAVKIRDGKI-SGKYNCIIHPEIEVSDFIINLTGISR 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + E ++ G N FD + ++ PF V Sbjct: 61 DMLRKGI----PLKEGVEEFLEFSGDLPILGHNVMFDYKFMKMAAASFKYPFEKTGV--- 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + E + L+ + H A DA ATA F+ ++ Sbjct: 114 --------DTLKVARKLLTGLENKKLETLCAHYHYVNQAAHRAYDDALATAVVFEQMKK 164 >UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB Length = 484 Score = 161 bits (409), Expect = 9e-39, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 64/185 (34%), Gaps = 18/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYYER 63 V D ETTGL V++G + V G + T+ P+A ++G Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVSTA 336 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A A E + N FD + R + W Sbjct: 337 MVQGA----PDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLA---------W 383 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRH 181 H + D +A + + LDA+ ERL + + RH+A+GDA ATA + Sbjct: 384 DHPILDTVLLSA--VLFGASVPHTLDALCERLDITIPPALRHTALGDAQATACALVQMIP 441 Query: 182 TAAAH 186 A Sbjct: 442 MLQAR 446 >UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYA8_9GAMM Length = 595 Score = 161 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 16/187 (8%) Query: 2 AKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A + +++D ETTG + + +EVG++ + H+ + + + ++G Sbjct: 364 ANRQLILDTETTGFEAQNGDRIIEVGIVEMINRRFTGEKLHVYINPKIEMGEEVIRVHGI 423 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + D+L+G N FD + + + +P Sbjct: 424 HNAFLNDM----PVFEQVGEAIYDFLQGAELIAHNAGFDMSFLQAEFARLGLPDI----- 474 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + + A K + LDA+ +RL V +R H A+ DA A + Sbjct: 475 ---NQTVTVTDSLAIAKRMF-AGQRNTLDALVKRLNVGKQDRTFHGALLDAEILAEVYLA 530 Query: 179 LRHTAAA 185 + A Sbjct: 531 MTGGQVA 537 >UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF57_9CLOT Length = 319 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 15/177 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+DLETTG D +E+G L + GE + +T + D +++ G Sbjct: 21 DYVVIDLETTGYDPHRDEIIELGALRIHEGEVVESFSSLT-KPQRDLDDYIIQLTGISNE 79 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + + D++ + G N FD + + S+ + + Sbjct: 80 MLA----SAPELSDVFPRYLDFIGDSIVVGHNVHFDVNFIYDTCIKESLKLFTNDLVDL- 134 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L V+ + V H ++ D T CF+ R Sbjct: 135 ---------LWLSRKLLPDLTSHKLCRVSSHFNICVEGMHRSLFDCKTTFECFEKCR 182 >UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidetes RepID=A0LZ46_GRAFK Length = 457 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 18/177 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 ++D+ETTG Y+ E+ + D + + F+ + EQ P + + G Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGQKVVDQFISLVNPEQPIQ--PFVVNLTGINND 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + N FD I+ + + + Sbjct: 60 MLKNA----PKFYEVAKRIVEITEDCILVAHNAKFDYRILRTEFRRLGFEYERKS----- 110 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L K I L + LG+P+ +RH A GDA AT F ML Sbjct: 111 ------LCTVELSKKLIPGLPSYSLGKLVRSLGIPLSDRHRAAGDAQATIKLFKMLL 161 >UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Treponema RepID=Q73L66_TREDE Length = 217 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 15/174 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 D ETTG + VE+G + D + ++ ++ P+A ++N + Sbjct: 16 FTAFDTETTGTEAKAERVVEIGCVKFDIRGVIARY-NVLIDPEKPMPPEAGKVNQITDEM 74 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + A + D++R N +FD + + ++ + Sbjct: 75 LAG----QPKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCG-------KTKLTN 123 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + L +A + GV VN H A DA F + Sbjct: 124 KVFDT---LTFARETLPGLQSYALQNLATQFGVQAVNAHRAEDDARVCMEFFKI 174 >UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Burkholderia RepID=A9AEP6_BURM1 Length = 398 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + L+ VDLETTG E+G++ + + + Q P ++ G Sbjct: 35 EQPLVFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIP--PFIQQLTGIS 92 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + + L G F N +FD + + F+P Sbjct: 93 DAMVRDA----PSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 143 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + GLDA+ R G+ RH A+ DA + L Sbjct: 144 ------DVLCTVRLSRALFPRESRHGLDALIARHGLVPAARHRALADADLLWQFWRHLHG 197 Query: 182 T 182 Sbjct: 198 I 198 >UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit family n=14 Tax=Actinomycetales RepID=D1BFZ9_SANKS Length = 616 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 56/181 (30%), Gaps = 13/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVDLETTG A E+G + V GE + V + G Sbjct: 61 TFVVVDLETTGGSSKDAGITEIGAVKVRGGEVI-GEFQSLVNPGHPVPAFIARLTGITTL 119 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + ++ RG N FD + + + + + Sbjct: 120 MVS----SAPSIELVLPSFLEFARGTVLVAHNAPFDISFLKAAARSMDLAWPG------- 168 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +++ D A + D L +A + H A+ DA AT L Sbjct: 169 -NQVLDTVPLARRVVTRDEAPNHKLGTLAALFRATITPDHRALSDARATVDVMHALFDRM 227 Query: 184 A 184 A Sbjct: 228 A 228 >UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae RepID=C1DWW1_SULAA Length = 205 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYER 63 ++VDLETTGL+ + +E+ L V+ G + H V+ P ++ G Sbjct: 11 FLIVDLETTGLNPVNSEIIEIAALRVEGGIVVD-KFHTLVKPSIGFIPTYITKLTGITNA 69 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + + + + N FD + + +T + Sbjct: 70 LV----VDKPTIEEVFPQFLKFSENSIIVAHNAQFDMSFLNS-------VSYQITGRSIQ 118 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L K + L +A +P +H A+ DA T F + Sbjct: 119 NPVLCTQN---LAKRLFPDLPSKSLVNLAYHFNIPYNKKHRALEDALVTYELFKKIIDYL 175 >UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-positive type n=16 Tax=Bacteria RepID=C4Z5K4_EUBE2 Length = 1513 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 18/164 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 +V DLETTG + +E+G + V GE + F + E + + Sbjct: 470 NDTYVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDRFSTFVNPEIPIPFRIET--LTHI 527 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + + E ++ G N FD++ + + + Sbjct: 528 NDQMVMNA----PKIEEILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTT--- 580 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + D A + + LD + + L V + + H Sbjct: 581 ------IIDTVLLA--QFLMPNLHNYKLDTLTKHLNVVLESHHR 616 >UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Proteobacteria RepID=DPO3E_SALTI Length = 243 Score = 160 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 18/183 (9%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D ETTG++ Y+ +E+G + V H+ ++ DP+A ++G Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVHGI 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L L + A E D++RG N +FD + + Sbjct: 69 ADEFL----LDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTF 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + A + + LDA+ R + R H A+ DA A + Sbjct: 125 CKV------TDSLALARKMFP-GKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLA 177 Query: 179 LRH 181 + Sbjct: 178 MTG 180 >UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A526_BIFAD Length = 256 Score = 160 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 16/187 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +DLETTG VE+G + V G + + + + +NG Sbjct: 82 MVDNYTSIDLETTGFSPSDDRIVEIGAIRVRNGRPVKRYSQL-INPQRPLPEEITRLNGL 140 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + L + + ++ +T G N FD+ + M Sbjct: 141 TDADLRN----QPTVDQVLPDFIRFIGNDTLIGHNINEFDAAFLLANTTRLGMR------ 190 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + L + L + R G+ H A DA TA C++ + Sbjct: 191 -HIGNKTIDTLP---LDRALYPEEPKHRLVDIIRRFGIAQTESHRAADDALQTAQCYETM 246 Query: 180 RHTAAAH 186 + A+ Sbjct: 247 KAYMKAN 253 >UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XHM4_9FLAO Length = 221 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 13/178 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D ETTG + + +G L + + + + +A+ I+G Sbjct: 35 RFVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQEVFNEEAVAIHGILRE 94 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++E+ A +++ G + FD I+ P ++ Sbjct: 95 NRKYKKVSEE---EAVKAFLEFIGDAILVGHHVGFDIGIINYALKRLGAP-------KLK 144 Query: 124 HHRLADLAAYAAGKLNI---DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + Y + DP ++ LD + E L + +RH A+GDA TA F Sbjct: 145 NKFTDTGVLYKRTVHLVNITDPNKVYTLDDLCEELNIAKTDRHKAMGDAYITALAFLK 202 >UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Roseobacter RepID=Q16CY8_ROSDO Length = 228 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 65/182 (35%), Gaps = 17/182 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG D + VE+G + + + H + + +A +++G + Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPERSMPEEAFQVHGLGDDF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + A D++ N AFD + + ++P P W Sbjct: 64 LRDK----PKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELGWINLPKIP------WE 113 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + L P LDA+ R G+ +R H A+ D+ A + L Sbjct: 114 QAIDTLDI----ARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELIGG 169 Query: 183 AA 184 Sbjct: 170 RQ 171 >UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alphaproteobacteria RepID=Q0C6A4_HYPNA Length = 232 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 17/192 (8%) Query: 1 MAKQL--IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M +++ I D ETTGL+ + +E+G + + + A + I Sbjct: 1 MTERVREIAFDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINPGMAVSEATIRI 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + L + E ++ N +FD + + P Sbjct: 61 TGITDDHLRDKPPFEHP--DIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPE 118 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFC 175 R D A + P LDA+ +R + + +R H A+ D+ A Sbjct: 119 D-------RWVDTVQMARKR---YPGAPASLDALCKRFDISLESRTFHGALLDSQLLASV 168 Query: 176 FDMLRHTAAAHL 187 + L A Sbjct: 169 YLELLGGRARAF 180 >UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Deltaproteobacteria RepID=C7LWI5_DESBD Length = 244 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 6/184 (3%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYER 63 V+D E TGL V +G + V + + + + I+ Sbjct: 46 YTVLDTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRPSIPLPKTSTLIHRITPE 105 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMPFSPLTVGRV 122 + + A E+ ++ +G G + D + + R + P + + + Sbjct: 106 AIAQA----PPLAEVLPELIEFCKGTLIVGHHVGLDMSFLNRACRKNHGQPLANPCLDTM 161 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + + L +A +P H A+GDA TA+ F L Sbjct: 162 RMAMLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQTAYLFIYLAKK 221 Query: 183 AAAH 186 A + Sbjct: 222 IAGN 225 >UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodobacterales RepID=A8LQ52_DINSH Length = 485 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 65/187 (34%), Gaps = 19/187 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYY 61 + ++ D ETTGL + ++ V G+ + T+ P A I+G Sbjct: 290 KYVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGIT 349 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + G N FD R++ F Sbjct: 350 DAMVADA----PDFLTAGRAFHGFADGAVLIAHNAPFDMAFFYRKQAEIGARF------- 398 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDML 179 H L + A + TE LDA+AERL +P RH+A+GDA AT F L Sbjct: 399 -DHPVLDTVLLSA---VIYGQTEQHSLDALAERLNVTIPEEARHTALGDALATTEVFLKL 454 Query: 180 RHTAAAH 186 A Sbjct: 455 LPMLQAK 461 >UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria RepID=B0VKV7_ACIBS Length = 459 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 17/184 (9%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 + +++D ETTG + D +EVG + + + HI + +++++G Sbjct: 229 QGPRQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYIN-PEKPVGDSVQVHG 287 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + + + A + ++L+G N FD + + +P Sbjct: 288 ITDEFL----VDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSEV- 342 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + D A A K P + LDA+ R +P +R H A+ DA + + Sbjct: 343 -----CEVTDTLALAKNK---HPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYL 394 Query: 178 MLRH 181 + Sbjct: 395 AMTG 398 >UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales RepID=A1SLE5_NOCSJ Length = 601 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 56/184 (30%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTAL-PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI-NGYY 61 VVDLETTG + E+G + V GE L T+ P + + G Sbjct: 29 TFCVVDLETTGGSAEGGAMITEIGAVKVRGGEVLG--EFQTLVNPRTEIPAFIAVLTGIS 86 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A ++ G+ N FD + P+ V Sbjct: 87 NSMVADA----PPVEAALPAFLEFAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPGFEVV- 141 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D A A ++ D L ++A+ G H A+ DA AT L Sbjct: 142 -------DTARLARRVVSRDDAPNCKLSSLAKAFGSTTTPNHRALSDARATVDVLHGLME 194 Query: 182 TAAA 185 Sbjct: 195 RLGG 198 >UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flavobacteriales RepID=A4BWD8_9FLAO Length = 462 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 49/178 (27%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG E+ L D + + V + G Sbjct: 3 YAVVDIETTGNGPKGQKITEISALIFDGKKIVD-EFTSLVNPEQNIPAFITSLTGITNAM 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + +V + F N FD I+ + + F Sbjct: 62 VRNA----PRFFEIAKKVAEITENTIFVAHNVNFDYNIIQAEFKSLGFDFKRKK------ 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + I L + +P+ RH A GDA ATA L Sbjct: 112 -----LCTIRLTRKIIPGLPSYSLGNICTGENIPINGRHRAKGDAEATAELLRRLIER 164 >UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XIW2_9CAUL Length = 247 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 22/192 (11%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEI 57 MA++ IV+D ETTG D +EVG + + F + E+L AD A+ + Sbjct: 1 MARE-IVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPAD--AIRV 57 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + + A ++ D++ N FD + + P Sbjct: 58 HGITD----DKVKDAPKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPL--- 110 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFC 175 + R D A + P LDA+ +R + +V+R H A+ DA A Sbjct: 111 ----LHETRWIDTLQLAQKRF---PGMANSLDALCKRYKISLVDRTLHGALIDARLLAEV 163 Query: 176 FDMLRHTAAAHL 187 + L+ L Sbjct: 164 YLELKGGKERVL 175 >UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothiorhodospiraceae RepID=Q0A739_ALHEH Length = 729 Score = 159 bits (404), Expect = 4e-38, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 17/178 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 +V D ETTGL + V + + + G L + P ++ +G ++ Sbjct: 536 YVVFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNPGRTIPRSSILFHGIHD 595 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + ++ + N AFD + + + F Sbjct: 596 TTVADK----PRIETVLPRFHTFVGDSVLVAHNAAFDMKFIRLKERRCGVRF-------- 643 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L L D T L+A+A RLGV V +H+A GDA TA F L Sbjct: 644 DNPVLDTLL---LSVFLHDHTADHTLEAIAARLGVEVTAQHTAWGDALVTARVFACLL 698 >UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2 Length = 233 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 64/183 (34%), Gaps = 16/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + +D+ETTGL+ +EVG+ V+ G+ V + + E+ G Sbjct: 1 MINRYVALDIETTGLNPAVDRIIEVGMARVEDGQITQKYS-TLVYPGISVSERITELTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + GE+ +++ G N FD + + + V + + Sbjct: 60 HNEELTGK----PRIEDIIGEITEFIGDWPVLGHNVIFDFSFLKKAAVNNGLTIND---- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + E + L + + + H A DA + + + L Sbjct: 112 -------DGIDTLKLARRILPEVEHKSLSFLCQYFNIDPGRSHRAYDDAVSASLLYAKLE 164 Query: 181 HTA 183 Sbjct: 165 EIK 167 >UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolbachia RepID=B3CMS2_WOLPP Length = 234 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTGLD +E+G + + H + + +I+G E Sbjct: 8 IVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKIHGISEEF 67 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + E D++ + N FD + + + G + Sbjct: 68 LEDK----PLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLN-------AGLISS 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R+ D A K P L+A+ +R + + R H A+ DA A + L Sbjct: 117 DRVLDTLPLARKKFVGSPA---SLNALCKRFDISLEGRELHGALVDAQLLAKVYVELTGG 173 Query: 183 AAAHL 187 L Sbjct: 174 LQTFL 178 >UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0M5_PHYMT Length = 1449 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 20/183 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D ETTGL +E+ + + + + + P + + Sbjct: 408 TYVIFDFETTGLSKINDQIIEIAAIKIQNNQIID-EFQTLINPQQELTPFIENLTNISNQ 466 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTVG 120 L + A + + + N +FD + Q + + + Sbjct: 467 DLKN----QPLIATILPKFLKFCENSILIAHNISFDMGFLVNQTKKHLNLKLNLPFIDTL 522 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L Y L ++A+ + N H A+ D T F L Sbjct: 523 NLARYCLDSNLRY------------FNLKSLAKYFKISFENHHRAMSDVLITKTIFQQLL 570 Query: 181 HTA 183 + Sbjct: 571 NYL 573 >UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacter sp. M18 RepID=C6MPJ2_9DELT Length = 835 Score = 159 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYY 61 + +V D ETTGL V + + + G+ T+ P ++ + Sbjct: 640 EYVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAESTAFHRIE 699 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + + N AFD + +P Sbjct: 700 DHMVADA----PSMNEVYPQFVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLP-------- 747 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + D + G TE LDA+A+R+G+ + RH+++GDA ATA F L Sbjct: 748 LVENPILDTLFLSVG--LHSGTEGHSLDAMAQRMGIAIEGRHTSLGDARATAQIFLGLLS 805 Query: 182 TAAAH 186 Sbjct: 806 LLPGR 810 >UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus RepID=A5LYL7_STRPN Length = 910 Score = 159 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 18/185 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 +V D+ETTGL ++V + G + F I +A E+ G + Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSA--FTTELTGITD 481 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E Q++ + N FD + + +P ++ Sbjct: 482 DHVKNAK----PLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLP-------KI 530 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF-CFDMLRH 181 + L + + GL + +R GV + + H A DA AT F ++ Sbjct: 531 SQPVIDTLE---FARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKE 587 Query: 182 TAAAH 186 A H Sbjct: 588 VAEKH 592 >UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neorickettsia RepID=C6V4W1_NEORI Length = 228 Score = 159 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 16/188 (8%) Query: 3 KQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +++D ETTGLD + +E+G + + + HI + +A ++G Sbjct: 4 RRKVILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPEREISKEATRVHGIT 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + ++ + N +FD + + + Sbjct: 64 FEQLAD----SPKFIDIADDFLQFIGSSEIVAHNASFDIRFLNSELIRARQRRL------ 113 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + + D A A I P LDA+ R + + R H A+ DA A + L Sbjct: 114 IKLENVIDTLAMA---RKIFPGSPASLDALCRRFRISLEQREFHGALLDAQLLARVYIEL 170 Query: 180 RHTAAAHL 187 + + Sbjct: 171 SKGSQVSM 178 >UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class) RepID=A5UUI5_ROSS1 Length = 956 Score = 159 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 22/186 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEING 59 M + I +D+ETTGL+ +E+ + + E L T+ Q + P + + G Sbjct: 1 MNQIYIAIDVETTGLEAGVDEIIEIAAVKFNADEVL--ETFSTLVQPVHSLPLNSSRLTG 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + + A +L+ G N FD ++ Q + +P Sbjct: 59 ITADMLA----SAPRFAEVAPRFAAFLKNYPLVGHNVEFDLRMLRAQGMR--LPQPAFDT 112 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L + T L A+A LG+ H A+ DA T F L Sbjct: 113 FEL-------------ATLLMPRTPAYRLSALAATLGIHHDEAHRALSDADVTRQIFLYL 159 Query: 180 RHTAAA 185 A Sbjct: 160 LRRIEA 165 >UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDG4_9ACTO Length = 550 Score = 159 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 60/187 (32%), Gaps = 19/187 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VVDLETTGL E+G + + G + V+ P + G Sbjct: 29 WVVVDLETTGLGAGAD-ITEIGAVRIRDGAVVD-EFSSLVKPSRPIPPFITSLTGITPAM 86 Query: 65 LYREALTEQQTAVAWGEVQDWLR-GN----TFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + A A +W G N +FD + R + P+ + Sbjct: 87 VADAA----PIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRV-- 140 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ D A A L L VA G V H A+GDA ATA Sbjct: 141 ------RIVDTLALARLALPRPLVRNHKLGTVASYFGTATVPEHRALGDARATAEILLGF 194 Query: 180 RHTAAAH 186 AA Sbjct: 195 IDLLAAA 201 >UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphingobacteriales RepID=C7PV18_CHIPD Length = 456 Score = 158 bits (401), Expect = 8e-38, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 52/177 (29%), Gaps = 16/177 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VD+ETTG E+ + + G ++ + + G + Sbjct: 2 YAIVDIETTGGHASANGITEIAIY-IYDGRNIVQQYETLINPGVPIPRYIQSLTGITDEM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + G++ L F N FD + + Sbjct: 61 VANA----PAFDEVAGDIFALLHDKIFVAHNVNFDYSFIQYHLAQAGYQLRTKK------ 110 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L G+ I L + + L + V RH A GDAAAT F +L Sbjct: 111 -----LCTVRLGRKIIPGLPSYSLGNLCKSLEISVTQRHRAAGDAAATVKLFGLLLQ 162 >UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI99_EUBR3 Length = 245 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 16/178 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K V+DLE TGL +E+G V GE + V + E+ G + Sbjct: 8 KNYTVIDLEMTGLSAKNDKIIEIGAARVRGGEIVD-TISTLVNPKQHIPQRVQELTGITD 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A A + +++ + G N FD + + + V + S Sbjct: 67 SDVENAA----DMDEAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVNHKRTLS------- 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + + + L+ + E GV N H A+ DA T F+ L Sbjct: 116 ----LNAYDTLKIARKCLPAEQSKKLEDLCEYFGVSRKNAHRALDDAIETKQIFEKLL 169 >UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Actinomycetales RepID=A0QF17_MYCA1 Length = 643 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 54/190 (28%), Gaps = 22/190 (11%) Query: 4 QLIVVDLETTGLDYDT------ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 +VVDLETTG + E+G + V G + V+ + P+ M + Sbjct: 39 TFVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDG-VVLGEFATLVDPQRSIPPQIMRL 97 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLR---GNTFAGSNPAFDSTIVARQRVTYSMPF 114 G + ++ G N FD + + + Sbjct: 98 TGITTAMVSDA----PAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAW 153 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 R+ A L+ + L ++A V H A+ DA AT Sbjct: 154 P--------RPRVLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARATVD 205 Query: 175 CFDMLRHTAA 184 L Sbjct: 206 VLHALIERVG 215 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVD+ETTG + ++ G + ++ + ++ + L + + + G Sbjct: 6 TYAVVDIETTGGNVASGDRMIQFGCVLLEGDQVVHRFA-TNINPLTSIPKQIEHLTGLSN 64 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + + L G N FD T ++ + MP + Sbjct: 65 KTVAQA----PYFEDIAATIYNLLDGCIIIAHNIQFDYTFLSAELQRCGMP-------AL 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + ++ + L+ + + + N H A DAA TA F +L+ Sbjct: 114 QNKGIDTVE---LAQVLLPTESSYRLNDLVSKFNIEHTNPHQADSDAAVTAELFLVLKQ 169 >UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=Q65S83_MANSM Length = 260 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 71/183 (38%), Gaps = 19/183 (10%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 I++D ETTG++ Y+ +E+G + + H+ ++ DP+A++++G Sbjct: 11 ILLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPDRLVDPEAIKVHGI 70 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + E D+++G N FD + + + + + Sbjct: 71 TDEMLEDK----PVFTEVAQEFIDFIKGAELLIHNAPFDVGFMDYEFRKHHIDVKTADIC 126 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 V + + P + LDA+ +RLG+ R H A+ DA + + Sbjct: 127 SV-------TDTLQLAR-QMYPGKRNSLDALCDRLGIDNTKRVLHGALLDAEILGDVYLV 178 Query: 179 LRH 181 + Sbjct: 179 MTG 181 >UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caulobacteraceae RepID=B4W5N5_9CAUL Length = 241 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 18/190 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG D +EVG + + H V P A+ ++G Sbjct: 1 MARE-IVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPERLIPPDAIRVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + ++ +++ N FD + + P + T Sbjct: 60 ITD----DKVKDAPKFHEIADDLIEFIGDAPMIAHNAGFDRNFIDFEYKLCGRPITGET- 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 R D A + P LDA+ +R V +V R H A+ DA A + Sbjct: 115 ------RWIDTLKLAQARF---PGMPNSLDALCKRFKVSLVERTLHGALIDARLLAEVYL 165 Query: 178 MLRHTAAAHL 187 LR L Sbjct: 166 ELRGGKERVL 175 >UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTI9_9FIRM Length = 828 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 66/182 (36%), Gaps = 17/182 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ VVDLETTG D +++G + ++ G+ L + + I G Sbjct: 7 RIAVVDLETTGSHLDQGDQIIQIGAVLIEDGQVLAQHS-MLLNPERNIPTHITAITGIQS 65 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + G + L+ F N FD T + + + F P Sbjct: 66 DQVQDA----PTFSQVAGLWYERLKDCFFVAHNLGFDLTFLQAKFAEQGLDFQP------ 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L K+ + L +++ G+ + H A+GDA TA D+L H Sbjct: 116 -----PALDTVQLAKIFLPQAPGFNLQDLSQFFGLNFQDAHDALGDARMTAHLLDVLAHQ 170 Query: 183 AA 184 AA Sbjct: 171 AA 172 >UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=Q16B76_ROSDO Length = 465 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 64/186 (34%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYYE 62 +V D ETTGLD T V++G + V G+ + T+ P + ++ + Sbjct: 272 TFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPPGSTAVHQISD 331 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + VA + N FD + RQ F Sbjct: 332 AMVADA----PGFDVACRAFHQFAEHAVIVAHNAPFDMAFLRRQCRDQDYAF-------- 379 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLR 180 + L + A + + LDA+ +RL +P RH+ +GDA ATA L Sbjct: 380 DNPILDTVHLSA---VVFGGSAEHTLDALCDRLNVHIPDDVRHTGLGDALATAKALVALI 436 Query: 181 HTAAAH 186 A Sbjct: 437 PVLEAR 442 >UniRef50_B0UD78 DNA polymerase III, epsilon subunit n=5 Tax=Alphaproteobacteria RepID=B0UD78_METS4 Length = 238 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 65/189 (34%), Gaps = 14/189 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M ++ IV+D ETTG D T VE+G + + H + A+ ++G Sbjct: 1 MLRE-IVLDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQRPVSQGALAVHGL 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + A D+ TF N AFD + + P Sbjct: 60 ADAFLADK----PPFAAILPAFLDFCGDATFVIHNAAFDVGFLNAEYARLGDAAPPA--- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + D A A K P LDA+ R G+ R H A+ DA A + Sbjct: 113 -IDLAGVVDTLALARRK---HPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIE 168 Query: 179 LRHTAAAHL 187 L L Sbjct: 169 LLGGKQTSL 177 >UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY86_DICNV Length = 233 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 21/193 (10%) Query: 1 MAKQLIVVDLETTGLD------YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA 54 M+ + ++ D ETTG++ + +E+G + + H + DP+A Sbjct: 1 MSFRSVIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPEQPVDPQA 60 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMP 113 +++G + L + E + +L N AFD + R+ Sbjct: 61 FKVHGISDEFLADK----PFFKDVLPEFEAYLASADELVAHNIAFDRQFIDRELQLAGCD 116 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAA 171 + + D A K LDA+ +R GV R H A+ DA Sbjct: 117 YRLGDKFTL-----VDSLKIAREKFA---GARNNLDALCKRFGVDNTGRELHGALLDAQL 168 Query: 172 TAFCFDMLRHTAA 184 A + L + Sbjct: 169 LAEVYLKLTGGQS 181 >UniRef50_C0FUI4 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUI4_9FIRM Length = 241 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +V+DLE TGL+ T +E G V + + K + + G Sbjct: 1 MLTDYVVIDLEMTGLNAKTDRILEAGAARVRGN-VVTATFSEIINPKRKLPEKVVSLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + T+ D++ + G N FD + + + V + F V Sbjct: 60 TNEMAAQGKETDAT----LAAFFDFIGEDILVGQNVIFDYSFLKQWAVNHKRTFERNAV- 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + L ++ G+ V+ H A+ D T F+ ++ Sbjct: 115 ----------DTLKLARKFLPQEQKKDLASLCSYFGIERVHAHRALDDVMETQQIFEQMQ 164 Query: 181 HTAAA 185 A Sbjct: 165 KMYEA 169 >UniRef50_Q0EZC1 Probable DNA polymerase III (Epsilon chain) protein (Fragment) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZC1_9PROT Length = 300 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 20/190 (10%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI---TVEQLAAADPKAMEING 59 +LI++D ETTGL + VE+G + V + L H+ + + + I+G Sbjct: 54 RLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPERNIPDEVVRIHG 113 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E D++ G T N FD + + + P Sbjct: 114 IDN----AKVKDQPTFREIAQEFLDFIEGATLVIHNAPFDLGFIMNELRINNFP------ 163 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + H ++ D +A K P + LDA+ +R + +R H A+ D+ A + Sbjct: 164 -EIGHMQVIDTLVFAREK---HPHQRNNLDALCDRYNIERGHRELHGALLDSELLAEVYL 219 Query: 178 MLRHTAAAHL 187 + L Sbjct: 220 GMTGGRQFSL 229 >UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA Length = 929 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 17/187 (9%) Query: 1 MAKQ-LIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M K VVDLE TG D+D +++G V+ G+ + V ++ Sbjct: 1 MNKTKYAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVD-TFQSKVNPQRPIPAGITKLT 59 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + + EV L F N FD + ++ V P Sbjct: 60 GITDEQVQNA----PKFNDIVDEVYRKLVDTVFVAHNVEFDFPFLNQELVRSGYPELN-- 113 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + ++ T+ L + L + + HSA DA ATA Sbjct: 114 --------IPAVDTVSLSQIVFSFTKGYRLRDLTSYLKIEHDDPHSADSDAIATANLLIA 165 Query: 179 LRHTAAA 185 ++ Sbjct: 166 IKKNLQQ 172 >UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysipelotrichaceae RepID=C8NZK8_ERYRH Length = 1433 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 19/187 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 + DLETTGL +E G + ++ G + I P E+ Sbjct: 381 QTGSYVSFDLETTGLSNYYDHIIEFGGVLIENGRVVKKMQTFIKA--PVPVRPFIQELTN 438 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L A E+ ++L + N FD + Sbjct: 439 ITDADLVNA----PSIEEAMDEILEFLGDHVLVAHNAQFDIDFIQETLRRIG-------K 487 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFD 177 + + + L + D L ++A + + H A DA + F Sbjct: 488 EPIQNAVIDTLD---LSRALFDNRRSYRLGSIARFMRIGYDEGVAHRADYDAEVLSLVFL 544 Query: 178 MLRHTAA 184 + Sbjct: 545 EMLRLEQ 551 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 14/177 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +DLETTGLD++ +EV L+ + GE + + P + G Sbjct: 7 FVALDLETTGLDFEKDEIIEVALVRFENGEPKENLDFLVKPSAVELRPFIETLTGIS--- 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A G++ ++ N FDS + + + + Sbjct: 64 -KADLESASDFATIAGQICSFVGDLPIVAHNAVFDSKFLKQTFTKVGISY--------DS 114 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 H D + ++ LD + + L + H A+ DA A F Sbjct: 115 HVFWD--SLTLSRIAFQDVPNHRLDTLVQELNIERSRAHRALPDADACGRLFVKALE 169 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 19/184 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + V+DLETTG ++VGL +D + V ++ G Sbjct: 2 KFAVLDLETTGHSVS-DDILQVGLAVLDDNLEIVETYSSFVRPTIEIPAFITQLTGIDAD 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ +L N FD+ + + Sbjct: 61 MVADA----PELDEVLMQLIPYLEDAVLVAHNVNFDAGFLNQALDRCGYH-------PFI 109 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF----DML 179 RL + ++ L AV E G+ H A DA ATA F L Sbjct: 110 GRRLDTIELL---RILYPSITTYQLGAVTELFGIAHDQHHRADSDAIATAELFAQSVQKL 166 Query: 180 RHTA 183 R Sbjct: 167 RQLP 170 >UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Neisseria RepID=Q9JYS6_NEIMB Length = 470 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 17/169 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLE+TG + EV L+ + G + + ++ + G + Sbjct: 29 PVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQ--FVAGLTGISDG 86 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A GE+ L+G N FD T + + + FS Sbjct: 87 MVADA----PVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSS------- 135 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 L + + LD++ ERLG+ V +RH A+ D +A Sbjct: 136 ----PALCSVQLSRCLYPQFYKHSLDSIIERLGIVVEDRHRAMADVSAL 180 >UniRef50_A5IJS5 DNA polymerase III, epsilon subunit n=6 Tax=Thermotogaceae RepID=A5IJS5_THEP1 Length = 186 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 59/184 (32%), Gaps = 18/184 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 VVD ETTG D VE+ + V G+ ++ P ++ ++G Sbjct: 8 FCVVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIRIPALVQKVHGISN 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + +D+++G N FD T + + Sbjct: 68 MDIEEA----PDMDAVYNLFRDYVKGTVLVFHNANFDLTFLDMMAKETG-------NFPI 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + L + L + ERLG+ RH A+ DA TA F L Sbjct: 117 TNPYIDTLD-LSEEIFGRP----HSLKWLCERLGIKTTIRHRALPDALVTARVFVKLVEF 171 Query: 183 AAAH 186 + Sbjct: 172 LGEN 175 >UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphingobacterium spiritivorum RepID=C2FTR2_9SPHI Length = 469 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 16/178 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VD+ETTG + E+ + + G + + + G Sbjct: 11 RIYAIVDIETTGGYAANSGITEIAIY-LHDGHQVIDSYQTLINPHKEIPYHIQMLTGITP 69 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L ++ +L F N FD + + + Sbjct: 70 EMLTDA----PSFEDVAADIYSFLENKVFVAHNVNFDYSFIYAHLKACGYQWKS------ 119 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + L + +RL +P+ +RH A GDA AT F+ + Sbjct: 120 -----PKLCTVRLARNIFKGFSSYSLGNLCQRLDIPISDRHRAAGDAKATVILFERIL 172 >UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquificaceae RepID=DPO3E_AQUAE Length = 202 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 17/179 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 +V+DLE TG D + + +++ + V+ G T+ P+ ++ + G Sbjct: 18 TFVVIDLEATGFDVEKSEVIDLAAVRVEGGIIT--EKFSTLVYPGYFIPERIKKLTGITN 75 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + E +++ N G D + + Y R Sbjct: 76 AML----VGQPTIEEVLPEFLEFVGDNIVVGHFVEQDIKFINKYTKQY----------RG 121 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 R L + + L +AE G H A+ DA TA F + Sbjct: 122 KKFRNPSLCTLKLARKVFPGLKKYSLKEIAENFGFETNGVHRALKDATLTAEIFIKILE 180 >UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anaplasmataceae RepID=Q2GJZ1_ANAPZ Length = 244 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 66/190 (34%), Gaps = 17/190 (8%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + IV+D ETTGLD D +E+G + + V H ++ A ++G Sbjct: 1 MKVREIVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + A E+ D+L+ + N FD + + S + Sbjct: 61 ITRESLIGM----PKFAEVADELLDFLQDSALVIHNARFDMRFLEVEIERLSNKRAITNT 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + D A K P LDA+ +R + R H A+ DA A + Sbjct: 117 -------IVDTLEMARKKF---PGMPASLDALCKRFNISTQERKFHGALKDATLLARVYV 166 Query: 178 MLRHTAAAHL 187 L L Sbjct: 167 ELLEALQRRL 176 >UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=11 Tax=Bacilli RepID=DING_STAEQ Length = 902 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 15/175 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG D +++G+ V + + H + P + E Sbjct: 5 TFAVVDLETTGNQLDYDEIIQIGITFVRQNQVID-TYHSMIRTDLEIPPFIQALTSIEEE 63 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ ++ F N +FD + + ++ F P V Sbjct: 64 ML----VQAPYFNEVADDIYQLIKDCVFVAHNISFDLNFIKKAFEKCNIQFKPKRV---- 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + K+ + L A+AE +P+ N H A DA TA Sbjct: 116 ------MDTLELFKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATTTAKLMIK 164 >UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=2 Tax=Thermus thermophilus RepID=Q5SK39_THET8 Length = 624 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 61/177 (34%), Gaps = 21/177 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYER 63 DLETTGLD + V + ++V L V P A ++G Sbjct: 440 YTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNPGRPISPAATAVHGLTAE 499 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + +++ N AFD + + PL + Sbjct: 500 MLRDK----PPLEAVLPAFRAFVQDTVLVAHNGAFDLAFL----RRAGLDQPPLLDTLL- 550 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +L + L+A+A R GVP RH+A+GDA TA F ++ Sbjct: 551 -----------LAQLLFPDLKDYRLEALAHRFGVPATGRHTALGDALMTAEVFVRMQ 596 >UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruegeria RepID=Q1GL30_SILST Length = 479 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 62/185 (33%), Gaps = 18/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 +V D ETTGL VE+ V G L V+ + +I+G + Sbjct: 273 FVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTKIHGVRDA 332 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + D+ + N FD ++ + + G W Sbjct: 333 DVAQ----SPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQ---------QEVQTGCSW 379 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS--AIGDAAATAFCFDMLRH 181 H + D +A L + LDA+ RL + + RH A GDA ATA L Sbjct: 380 DHPVVDTVLLSA--LVFGISADHSLDALCSRLSIEIPARHRHTAKGDARATAEALIRLLP 437 Query: 182 TAAAH 186 Sbjct: 438 LLQGK 442 >UniRef50_A4CKG8 DNA polymerase III, epsilon subunit n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKG8_9FLAO Length = 222 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 14/186 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D ETTG + +G L V G + D ++ I+G Sbjct: 33 DFVVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFVKQERFDRASVPIHGILRT 92 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 G A E+ D+ + G + +FD ++ + G + Sbjct: 93 GSSERV----TEREALAELLDFTGQSPVVGHHISFDQAMIQAACQRSGL-------GPLR 141 Query: 124 HHRLADLAAYAAGKLNIDPT---ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + Y + + LD +A++ + +RH+A+GDA TA F + Sbjct: 142 NPLIDTGLLYGHTLIKSPLLIKKDHYTLDELADKFDISCKDRHTALGDAYITAIAFLNIL 201 Query: 181 HTAAAH 186 A Sbjct: 202 ELLRAK 207 >UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQP7_9ACTO Length = 286 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 18/173 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVD+ETTGL + VE+ L+ ++ G + V+ DP ++ Sbjct: 36 PFVVVDVETTGLSSTSDRIVEIALVRIEGGRVVD-EWATLVDPGRDPDP--TFVHHITAE 92 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A GE+ L G N F+ +A++ + +P Sbjct: 93 MLSGA----PTFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGISTAP------- 141 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L + + + L + G+ + + H+A+GD ATA Sbjct: 142 ---LPAVCTLRLARQVL-AAPNFQLVSCCTVYGIELHDAHTALGDTRATAQLL 190 >UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum RepID=DPO3E_TREPA Length = 215 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 15/181 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNV-DTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 D ETTGL + +E+G + G F I ++ A P +IN + Sbjct: 15 FTAFDTETTGLKAEEDRIIEIGAVTFDRKGIIARFSTLIFPDR--AIPPDVSKINHITDD 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + +++G N FD + + L + Sbjct: 73 MLVNK----PRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAEL--------SLCKKQPL 120 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 H++ D A A L +A + G+ V H A DA F + Sbjct: 121 SHKVVDTYAMAQAVFPGLGRHQYRLQNLALQFGLTVHAAHRAEDDARVCMELFTTMIAHH 180 Query: 184 A 184 A Sbjct: 181 A 181 >UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ64_9FIRM Length = 1442 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 53/179 (29%), Gaps = 17/179 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTGL +E G + + G L ++ + + Sbjct: 392 TYVVFDLETTGLSAKYDYMIEFGAVKIKNGLRLDSKQLF-IKPPISIPAFIEKKTNISNE 450 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + E+ ++ N +FD + + S + Sbjct: 451 MVRNAK----SFSEVVDELLAYIGDAVLVAHNASFDFPFLNEELRRLSRK-------PLT 499 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDMLR 180 + + L + + L+ V+ + + H A DA A F+ L Sbjct: 500 NPVIDTLDM---ARAILSDRSRFALEYVSNHYKLNYSRSDAHRADYDANILADAFEHLL 555 >UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVH7_9AQUI Length = 215 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 74/188 (39%), Gaps = 22/188 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D ETTGLD A V +G L V + ++EI+G Sbjct: 39 TFVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFHRFVKPKELTRVSVEIHGITPH 98 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ-RVTYSMP--FSPLTVG 120 L ++A + + + +++RG+ G N FD IV + +P L V Sbjct: 99 ELEKKAESHDR---VLEDFMEYVRGSVLVGFNVEFDRKIVEKYSLKVLGLPLLNYRLDVF 155 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-L 179 R+W R L +AE LG+PVV HSA+ DA TA F L Sbjct: 156 RLWKKR---------------GGREGSLKDIAEELGIPVVGAHSALDDAYITALVFLKLL 200 Query: 180 RHTAAAHL 187 + A+L Sbjct: 201 KRFRGANL 208 >UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FGI7_9BIFI Length = 186 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VVDLETTG+ +E+G + V+ G ++ V + G Sbjct: 16 TDDYVVVDLETTGISPARDRIIEIGAVRVEHG-TVTAEYSKLVNPGRPVGGFITGLTGIS 74 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + LR +T N FD + + T+G Sbjct: 75 DEMVGNAS----PIEAVLPDFLAHLRPSDTIVAHNANFDINFLYDNCMR--------TLG 122 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + D + L + +R G+ H + DA T C++ ++ Sbjct: 123 KPFSYDFIDTLRLSRA--LFPQERQHRLVDLIQRFGIADEEEHRGLSDALQTVECYERMK 180 Query: 181 HTAA 184 A Sbjct: 181 PLLA 184 >UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchnera aphidicola RepID=DPO3E_BUCBP Length = 245 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 18/187 (9%) Query: 6 IVVDLETTGLDY-----DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D+ETTG++ +E+G + + H ++ D ++ +I+G Sbjct: 8 IVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIHGI 67 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L L + + + +++ + N FD + + + ++ Sbjct: 68 TDNFL----LDKPKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKIS-- 121 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + D A P + LDA+ R + V +R HSA+ DA A + Sbjct: 122 --DYCNVVDTLPLARQLF---PGKKNSLDALCNRYKINVSHRDFHSALIDAKLLAKVYTF 176 Query: 179 LRHTAAA 185 + + Sbjct: 177 MTSFQQS 183 >UniRef50_C5B532 DNA polymerase III epsilon subunit n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B532_METEA Length = 248 Score = 155 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 16/186 (8%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++++V D ETTG D +EVG + + G H V A I+G Sbjct: 4 SQRIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFRTGRHFHSYVNPERPVPADATAIHGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L A ++ +++ + N FD + S+P Sbjct: 64 TDEMLKDA----PVFAAVAADIVEFIADSPAIFHNAPFDLGFFDLEFGLLSLP------- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + R+ + + + GLDA+ R G+ R H A+ D+ A + Sbjct: 113 SLDRSRV--TDSLVHARKLLPAGAKAGLDALCNRYGIDRTRRTKHGALMDSELLADVWLA 170 Query: 179 LRHTAA 184 + T Sbjct: 171 MTGTGG 176 >UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6 Tax=Rhodobacteraceae RepID=DPO3E_RHOCA Length = 704 Score = 155 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 63/181 (34%), Gaps = 19/181 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYY 61 +V D ETTGL V++ + + G + T+ P A ++G Sbjct: 509 TFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGIT 568 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E + T A + G N FD + R+ + F Sbjct: 569 EAMVA----TAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIGKNF------- 617 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDML 179 + L + A + E LDA+ RLG +P RH+A+GD ATA F L Sbjct: 618 -DNPVLDTVLLSA---VVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRL 673 Query: 180 R 180 Sbjct: 674 L 674 >UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CLT9_9FLAO Length = 375 Score = 155 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 61/178 (34%), Gaps = 18/178 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 V+D+ETTG +D E+ + D E + F+ I E+ P ++ G Sbjct: 2 TYAVLDIETTGGKFDEEGITEIAIHRFDGHEVVDTFISLINPERPIQ--PYVQKLTGIDP 59 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + T + + + R + N FD I+ + F Sbjct: 60 KMVQ----TAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYNFERK----- 110 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + I E L + LG+PV NRH A GDA AT L Sbjct: 111 ------TLCTVDLSQRLIPDAESHSLGKLVRSLGIPVSNRHRANGDALATLKLLQHLL 162 >UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIX0_KOSOT Length = 185 Score = 155 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 17/187 (9%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEIN 58 M K +V+D ETTG +E+ + + G+ + H V I+ Sbjct: 1 MNKVYVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIRIPAYISGIH 60 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + +E + + +++L G + D Sbjct: 61 GLKNEDVT----SEPTISDVFPRFKEYLGNAIIVGHSIEVDMKFFDIACKEIG------- 109 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + L ++ L +A+RL + H A+ DA T F Sbjct: 110 TFPLSNQYIDTLKIAK----DLFKEGSYSLAELAKRLKIKDAPTHRALDDARVTGKVFLA 165 Query: 179 LRHTAAA 185 + Sbjct: 166 MVKKLGG 172 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 155 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 62/186 (33%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M+ + +VVDLETTG ++ + ++ G+ + + + E+ G Sbjct: 1 MSNKYVVVDLETTGNSAKKGDKIIQFAAVVMEGGKIIDQYSSL-LNPGKEIPAFIEELTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + A +V + L F N FD + + + + P Sbjct: 60 LNDSMVSDA----PVFAEIAPKVMELLEDAYFVAHNVLFDLSFLQEELLDAGFP------ 109 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + + + ++ L ++ + G+ H A DA ATA + Sbjct: 110 -GFYGPVIDTVE---LARTVLPCSDSYKLSDLSAKEGIMHDRPHQADSDAYATAKLLHIF 165 Query: 180 RHTAAA 185 Sbjct: 166 LERLEE 171 >UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chromobacterium group RepID=B9Z6P2_9NEIS Length = 476 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 56/182 (30%), Gaps = 25/182 (13%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VDLETTG E+G+L +D + + Q P + G Sbjct: 4 EQPCAIVDLETTGGHITRDRITEIGILLIDGERIERYETLVNPGQPIP--PFIENMTGIS 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + + L+G N FD + + F Sbjct: 62 DAMVAEA----PPFAALVETLLEKLQGRLLLAHNARFDYGFLKNEFKRAGHVFQSEV--- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA--------ATA 173 L + LD++ R G+ + +RH A+ DA ATA Sbjct: 115 --------LCTVKLSRRLYPQHFKHSLDSLIARHGIVLADRHRAMADALAVYHFIEAATA 166 Query: 174 FC 175 Sbjct: 167 EL 168 >UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFY8_LIBAP Length = 245 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 21/181 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGYYER 63 IV D+ETTGLD +E+G + + + F + P+A++++G + Sbjct: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDE 68 Query: 64 GLYREALTEQQTAVAWGEVQDWL--RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + E D+ + + N FD + + + Sbjct: 69 FLKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-------KDP 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + R+ D + A K P+ L+++ +R G+ + +R H A+ D+ + + + Sbjct: 118 LDPSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 Query: 180 R 180 Sbjct: 175 M 175 >UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exonuclease n=2 Tax=Clostridium kluyveri RepID=A5F9M6_CLOK5 Length = 441 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 48/174 (27%), Gaps = 16/174 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VVDLETTGL+ +E+ + E + V P IN Sbjct: 131 FVVVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYT-TLVNPEVFIPPNITNINHIDNDM 189 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + +++ N FD L + + Sbjct: 190 V----KDCPEIKEVLPGFMNFIGQLPLVAHNAPFDIKF--------LNANLALLGLYLNN 237 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L + E L + E L + V + H A+ D + Sbjct: 238 PIIDTLP---ISRKLFSEIENHKLGTIKEYLNIDVQDSHRALPDCYVCGQIYLE 288 >UniRef50_C0QPN1 DNA polymerase III subunit epsilon n=1 Tax=Persephonella marina EX-H1 RepID=C0QPN1_PERMH Length = 206 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 DLETTGLD + + +G + + + + + + + I+ Sbjct: 34 TFCSFDLETTGLDVEKDEIISIGAVKIKEMKIDLSTSFYRIVKPERIPEKENILIHSIT- 92 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 E + + ++++G G +FD +++++ + Sbjct: 93 ---ASEMKKGEDIRDVLPKFLEYIKGTVLIGYFVSFDISMLSKY-------TQKFYGFPI 142 Query: 123 WHHRLADLAAYAAGKL----NIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + Y K+ + + + LD +AE L +PV RH+A+ D+ TA F Sbjct: 143 LNPYIDVSQLYIKKKVKSYTPYEKIKEKSLDQIAEELNIPVRKRHNALYDSITTALIFLS 202 Query: 179 LRHT 182 L Sbjct: 203 LMKR 206 >UniRef50_C8RRD8 Exonuclease n=2 Tax=Corynebacterium jeikeium RepID=C8RRD8_CORJE Length = 198 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 21/189 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IV+DLETTGL +E+ L++ GE + + + ++ G + L Sbjct: 13 IVIDLETTGLRPQEERIIEIAALHIRNGELQDKYT-TLLNPNLSVPQEITDLTGISDGLL 71 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTF---------------AGSNPAFDSTIVARQRVTY 110 + + E+ ++LR T G N +FD + + + + Sbjct: 72 ADK----PTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRT 127 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 + S R + RL A + + + L VA L +P H A+ DA Sbjct: 128 QLKNS-ADANRPYTPRLVCTAEASRTLIPRESVGRYRLGNVASYLKIPHRPLHRAMSDAL 186 Query: 171 ATAFCFDML 179 AT L Sbjct: 187 ATYDVLRAL 195 >UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma mobile RepID=Q6KIN3_MYCMO Length = 1433 Score = 155 bits (393), Expect = 7e-37, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 17/177 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V DLETTGL +E G + G+ + + V+ K I G Sbjct: 397 NETYVVFDLETTGLSPIFDDIIEFGAQKILNGKVIDTLQFF-VKPNKEISEKITLITGIK 455 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A ++ +++ +T N FD + + Y+ S L + Sbjct: 456 NQDVENAI----SEKEALKKILEFMGDHTVVAHNATFDMNFINEKIEKYNFQESNLQI-- 509 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCF 176 + K+ + L+ +A R G+ H A DA A + Sbjct: 510 --------IDTLVVSKIIEPEAKKFSLENLASRSGIIYNSTEAHRADYDADVLAKVW 558 >UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C737_9FIRM Length = 204 Score = 155 bits (393), Expect = 7e-37, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 + V+D+ETTGL+ D +EVG + V + + F ++ ++ P+ ++ G Sbjct: 22 EDYTVIDIETTGLNPDENEIIEVGAVKVRDRKIVDEFSSFVSPKKDI-ISPEIRKLTGID 80 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E + Q +++ G G N FD + Y + Sbjct: 81 EAMIEGA----DQIEDVIPRFNEFIDGEILLGHNVNFDINFLYDNYERY-------SDFY 129 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + E L+ V ++LG+ V +H A+ D CF+ R Sbjct: 130 LSNDYVD---LLKISRKLSPEFENHKLETVLKKLGIKVDQQHRAVSDCIDAHHCFEKYRE 186 Query: 182 TAAA 185 T A Sbjct: 187 TIIA 190 >UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flavobacteria RepID=A5FH18_FLAJ1 Length = 209 Score = 155 bits (392), Expect = 9e-37, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 18/191 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+D ETTG DY+ + +G L + G D +I+G Sbjct: 24 RFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKSTAQIHGI--- 80 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + D+L + + FD T++ + +P ++ Sbjct: 81 -LKDLLVKRPTELEALQQFLDFLGDSIIIAHHTVFDVTMINKALERNGLP-------QLT 132 Query: 124 HHRLADLAAYAAGKL---NIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD--- 177 + L Y + + + LD +A++ + +RH+A+GDA TA F Sbjct: 133 NKTLDTAYLYKKTLIQSHLFERKDHYTLDDLADKFDISKKDRHTALGDAYITAIAFLKIV 192 Query: 178 -MLRHTAAAHL 187 LR A L Sbjct: 193 KKLREKKAVSL 203 >UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSB2_CHLT3 Length = 578 Score = 155 bits (392), Expect = 9e-37, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 17/178 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 VVDLETTG +E+ + G+ + + EQ + + G Sbjct: 23 TFAVVDLETTGGLKPENRIIEICAIKCRNGQEVGMLESLVNPEQQISY--FISQYTGITN 80 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +V ++ + F N FD + + ++ Sbjct: 81 SMVDNA----PVIQSLLTKVSEFFQETIFVAHNVPFDMGFINMELERNGY-------AKL 129 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L + + + + + L +A+ G+ V NRH A GD AT L Sbjct: 130 TNRWLCT---FRLARRLLPTQQKKNLGDLAKYFGIIVENRHRARGDCEATIKLLAELI 184 >UniRef50_C6CYA2 DNA polymerase III, epsilon subunit n=2 Tax=Bacillales RepID=C6CYA2_PAESJ Length = 244 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 17/187 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYY 61 ++V DLETTG + + G +++ E ++ P + +E+ G Sbjct: 59 DIVVFDLETTGFYPSNGDEIISFGAVHMKGLELDESRQFYSLVNPKRRIPRQIIELTGIT 118 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++ D + + Sbjct: 119 NEMVQDA----PDLMQVLHDFMEFIGRRLLIAHAAGHDKQFLNAALWR-------TSKVS 167 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LR 180 + H L + K LD + E G+P+ RH A+ D+ TA + L Sbjct: 168 LNHRVLDTML---VAKWLEPKRASYALDDLLEDCGIPITERHHALQDSLMTAKLWQQFLV 224 Query: 181 HTAAAHL 187 ++ Sbjct: 225 RILDRNI 231 >UniRef50_B3R0A4 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0A4_PHYMT Length = 1522 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 14/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D+ETTG +E+ + + + V + Sbjct: 415 EYVVFDIETTGFSKVRDKIIEISGFKIKNNIVID-QFYSLVNPEIDLPENIYLLTKIKNE 473 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + +++ N +FD + + + ++ F L Sbjct: 474 TLKNA----PKILQVLPDFLKFIKNTCLVAHNASFDVSFIFEKSKQLNISFPLLP----- 524 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D A + + + L +A + V + H A DA AT F + + Sbjct: 525 ---VIDTLALSQYYFSSF-MKFFSLKRLAAKFKVKLEEHHRAKDDAKATTEIFMKILNLL 580 Query: 184 A 184 Sbjct: 581 E 581 >UniRef50_A9F4T5 DNA polymerase III, epsilon subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F4T5_SORC5 Length = 258 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 7/181 (3%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + VD+ETTG D +E+G++ +GE L + + ++ I+G + Sbjct: 43 QPIAFVDVETTGRDPAGDRIIELGIVIGRSGEILTRY-NWLIHPGRPIPAESTAIHGIKD 101 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A E+ +G A N FD + + + M Sbjct: 102 ----ADVEGKPSFAEVAEEILGCFKGAIPAAYNATFDRSFLLAELERVGMRPREP--PPA 155 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + E L +A RLG+ + H A DA A L Sbjct: 156 MRREVDWVDPLTFARELYKNEESRALGDMAARLGISLEKAHRATDDAEAALQVLYALAKD 215 Query: 183 A 183 Sbjct: 216 P 216 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A VVDLETTG + + +++G + V GE + + +++ G Sbjct: 16 APIYSVVDLETTGTNVNHGDRIIQIGCVLVQDGEIIN-HFETKINPREKIPRSIVQLTGI 74 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + + G + L TF N FD + + P Sbjct: 75 EDKDVRKA----PLFEDIAGTIYSLLAETTFVAHNVNFDFPFLNAELERAGYPSLS---- 126 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + ++ + + L + L + + HSA+ DA ATA + L Sbjct: 127 ------IPAIDTVTLSQILLPTAKSFRLRDLTSSLHIEHDHPHSAVSDAEATADLLNDLL 180 Query: 181 HTAAA 185 Sbjct: 181 KRVQE 185 >UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bacteroidetes RepID=A6EU25_9BACT Length = 472 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 17/185 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ V+D+ETTG E+ ++ V+ E + V + + G Sbjct: 5 TEKFTVIDVETTGG-VGQGRMTEICIITVENMEIVD-VWSSLINPEIYIPQHITALTGIT 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + + +++ R F N FD + ++ FS Sbjct: 63 DQMVTDA----PRFCDVAAIIEEKTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKK--- 115 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + I L + +G+ +++ H A D AT F L Sbjct: 116 --------LCTVRLSRKLIPGLPSYSLSKLCRSIGISLLDAHRAEADTRATTTLFLQLLE 167 Query: 182 TAAAH 186 + Sbjct: 168 KDSVA 172 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 18/177 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTG+ +E+ L V E + F + + A A ++NG + Sbjct: 58 YVVFDLETTGISAVKDDIIEISALKVKNHEQVETFSRLVNPRRPIPA--GATKVNGITDE 115 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRV 122 + +E E D++ G G N +FD + R + V Sbjct: 116 MVQ----SEPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAA-------DEVCRKAV 164 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + L + + L +A+ + H A D C++ + Sbjct: 165 LNDFIDTLFM---ARALLPGLSRHRLTDLADYFKISSEGAHRAFNDCVMNQICYEHM 218 >UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flexibacteraceae RepID=D2QE10_9SPHI Length = 180 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VD+ETTG E+ + G+ + H + P + G + Sbjct: 2 YCIVDVETTGGVKGPTRLTEIAIFR-HDGQQVVDSFHSLLNPGCPIPPFIRHLTGISDEM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A +V + + F N FD + + ++ F Sbjct: 61 VQDA----PTFADVANDVLNITQDAIFVAHNVGFDFSFIQKELNWLGHDFLRR------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + + L + L +P+ RH A GDAAAT F+ML A Sbjct: 110 ----TLCTVRTSRKLLPGYPSYSLGKLCRSLEIPLNGRHRAQGDAAATVLLFEMLLKNDA 165 Query: 185 AHL 187 L Sbjct: 166 QGL 168 >UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propionibacterium acnes RepID=D1YAF0_PROAC Length = 633 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 16/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI-NGYYE 62 VVDLETTG + + E+G + V G T+ + P ++++ G + Sbjct: 67 TFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEG--EFQTLVCPTGSIPASVQVLTGITD 123 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + ++ R N FD + R + P+ Sbjct: 124 VMV----RSAPSLNAVLPSWSEFSRSTALVAHNARFDIGFLQRAYAQHDYPW-------- 171 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A A L L ++ H A+ DA AT L Sbjct: 172 DDPAVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLHGLIDR 231 Query: 183 AA 184 Sbjct: 232 VG 233 >UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W351_9ACTO Length = 547 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 50/188 (26%), Gaps = 17/188 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +VVDLETTG + E+G + V G+ V A + + G Sbjct: 27 QETTFVVVDLETTGAGPGSHTITEIGAVRVRGGQVED-ELSTLVNPGRAIPAQITVLTGI 85 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLR----GNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 + A W R N FD + + + Sbjct: 86 TNAMVAGA----PPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHE 141 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 R+ D A A L +A +G P H A+ DA AT Sbjct: 142 --------PRVLDTLALARRAWTRSEVPNHRLATLASFVGSPTRPTHRALDDARATVDVL 193 Query: 177 DMLRHTAA 184 Sbjct: 194 HAALEVLG 201 >UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lovleyi SZ RepID=B3E5V5_GEOLS Length = 168 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 20/182 (10%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++IVVD ETTGL +E+G + V+ G+ + A ++G E Sbjct: 3 RVIVVDTETTGLSVRNQGRVIEIGAVAVENGQI-TAELATLINSGTPISYGAYRVHGISE 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L W ++ + N AFD + + M + Sbjct: 62 QMLAG----RPTPQEVWPWFLEFAGNSPLVAHNAAFDRAFINHELHLLGMSLAN-----P 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVV-NRHSAIGDAAATAFCFDML 179 WH + + L+ V + L +P RH A+ DA A + L Sbjct: 113 WH------CTVRLSRRKLPRLMNHKLETVYKHLFGELPEEVQRHRALDDARMAARVWVEL 166 Query: 180 RH 181 Sbjct: 167 LK 168 >UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacillus RepID=Q81AF9_BACCR Length = 315 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 18/176 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 +V+D ETTG + ++V + E + FV ++ E+ + + G Sbjct: 9 DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIP--DRITSLTGITN 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +L N N +FD + +P Sbjct: 67 YRVSDA----PTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEP------- 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 +++ D A K + L+ + LG+ + H+A D A + Sbjct: 116 -KNKVIDTVFLA--KKYMKHATNHKLETLKRMLGIRLS-SHNAFDDCITCAAVYQK 167 >UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR66_CLOPH Length = 235 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 57/177 (32%), Gaps = 16/177 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D+E+TGL + +E+ + G+ + + + E+ G E Sbjct: 3 FLAIDIESTGLSPEKDRIIEIAAIRYIDGKPKERFEKL-INPGCPLPERITELTGITEDM 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E + + G N + D + + + + + ++ Sbjct: 62 LAGAM----TEREVIKEFLTFAGEDVLLGHNVSVDFSFIKTAADRLKIGYERQGIDTLY- 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + E + L+++ E G+ H A+ DA A A + L Sbjct: 117 ----------LSRTLKSDLEKKNLESMCEHYGIIRECSHRALEDAIAAATLYQKLYE 163 >UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26FQ2_9BACT Length = 466 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG E+ ++ + L + ++ + G Sbjct: 8 YCVVDIETTGNRMTGNRMTEICIVRMRGDTILDKYSSL-IDPEVLIPDYITTLTGIDNAM 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A E+ ++ + F N FD ++ + F Sbjct: 67 VA----SAPVFADVAEEILNFTKDYIFVAHNVNFDYNVLRNEFKRLHHDFKRKK------ 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + I L + + +G+P++NRH A GD AT F L Sbjct: 117 -----LCTVRLSRELIPGMRSYSLGKLCDDIGIPLINRHRAEGDTDATVILFQKLI 167 >UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RD59_9FIRM Length = 1447 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 18/179 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V DLETTGL +E G V + + ++ +E+ G E Sbjct: 398 TYCVFDLETTGLSSRFDHIIEFGGQIVKDRTCIKSLQLF-IKPPVPIPAHIVELTGISEE 456 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A ++ D++ + N FD + + V + Sbjct: 457 HVRNAK----SFAECADQILDFIGDSILVAHNADFDYNFLNSELVRIGRK-------PLD 505 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLR 180 + + L ++ + L +A G+ H A DA A + + Sbjct: 506 NPVIDTLDL----ARSMQDRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLANTYMNML 560 >UniRef50_Q8D3D2 DnaQ protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3D2_WIGBR Length = 246 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 76/187 (40%), Gaps = 18/187 (9%) Query: 2 AKQLIVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME 56 ++ IV+D ETTG++ Y +E+G + + H ++ + +A + Sbjct: 5 TERQIVLDTETTGMNKNGPHYYGHRIIEIGAIEMINRRLTGRCFHTYLKPDRLVEIEAFK 64 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 I+G + L+ + + ++++G+ N FD + + + + Sbjct: 65 IHGISDEFLF----FQPTFEEIMEKFINFIKGSELIIHNSVFDIGFINNEIQLCNKNLNN 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAF 174 + ++ + D A NI P + LDA+++R G+ R H A+ DA + Sbjct: 121 IN----YYCSVIDTLKLA---RNIFPGKRNNLDALSDRYGIDTTKRILHGALLDAEILSN 173 Query: 175 CFDMLRH 181 + ++ Sbjct: 174 VYLLMTG 180 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 16/182 (8%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVD+ETTG D +++G + V + + V L + G + Sbjct: 7 YAVVDIETTGTSVTDGDRIIQIGCVFVQHNQVIN-HFETDVNPLKEIPAAISRLTGITNK 65 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + G + L F N FD + + P P Sbjct: 66 RVRHA----PLFDDVAGTLYSLLTNTVFVAHNVNFDLPFINAELERVGYPALP------- 114 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +A + + ++ + L ++ + N HSA DA+ATA F L Sbjct: 115 ---IAAVDTVSLSQILLPTATSFRLRDLSRLFNIEHDNPHSADSDASATAELFIFLFRRL 171 Query: 184 AA 185 A Sbjct: 172 RA 173 >UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4 Length = 922 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 20/190 (10%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ ++VD+ETTG+ + +++ + ++ + + + V + P + Sbjct: 2 ERFVIVDVETTGVSFIKGDRIIQIAFVVIEGKKIIDR-FNSYVNPMRDIPPFIRSLTNIN 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E + + L G F N FD + + + Sbjct: 61 D----NEVKDAPTFDLVAPRLLQALDGAFFVAHNVDFDLSFINEELHALGY-------TG 109 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD---- 177 + + + K+ + L ++E L + H A DA ATA F Sbjct: 110 LSGPVIDTVE---LSKIAYPTADGFRLSQLSESLHMNHDQPHRADSDAEATALIFLEIMD 166 Query: 178 MLRHTAAAHL 187 L H L Sbjct: 167 KLYHLPKQTL 176 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 18/176 (10%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEIN 58 M K+ +VVDLETTG +E+G+ ++ G+ + ++ P ++ Sbjct: 1 MEKKFVVVDLETTGHSIKSGDEMIEIGVAVIEDGQITERLSAFVRPQKPIP--PFISQLT 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + + + A V L G F N FD T + Sbjct: 59 GITDEDVAQA----ESFATIAPRVLQLLDGGVFVAHNVQFDLTFLNEALEEEGYLPYTGP 114 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 V + ++ + E L + E L + H A DA ATA Sbjct: 115 V----------IDTVELARILLPTAESHSLSHLTEALQLTHHEAHRAGSDAEATAE 160 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 62/180 (34%), Gaps = 15/180 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I+VDLETTGLD + A +E+G L V GE + H V + + G + Sbjct: 2 EWIIVDLETTGLDPERAEILEIGALRVRGGEIVD-TFHTLVRPERPIPDEITRLTGLSDA 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A + AG + F+ + + + Y +P P Sbjct: 61 DVAGA----PSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQPGD----- 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + ++ L+ +A RL + H A+ DA L A Sbjct: 112 -----GLCTLSLARILAPRLMSHRLEYLARRLRLRAEVSHRALADARTAHQLLMRLEEKA 166 >UniRef50_A4SZE6 DNA polymerase III, epsilon subunit n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SZE6_POLSQ Length = 466 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 54/175 (30%), Gaps = 17/175 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 L VD+ETTG +D E+G+ + + I + + + G Sbjct: 9 PDLAFVDIETTGSHFDRDRITEIGIKTLANDGIQVWERLINPQTFIPQN--IQRLTGISP 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + E++ L G F N FD + + F P Sbjct: 67 QMVEG----QPSFDQVAKELKQELEGKIFVAHNARFDYGFIKASFKRVGIDFKPKV---- 118 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L +L LD + G+ V RH A+GDA + Sbjct: 119 -------LCTVKLSRLLFPEQPRHNLDTIINAHGLQVSARHRALGDADLLLQFWR 166 >UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A497_GEMAT Length = 214 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 61/184 (33%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVD+ETTG E+ ++ V G+ + V P + Sbjct: 5 PFAVVDVETTGTRAAGGDRITEIAIVQVQGGQVGEVYSQL-VNPERPIPPYITSLTHIT- 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + V D LRG+ F N FD V+ + + + Sbjct: 63 ---WDMVRDQPTFREITSNVLDRLRGSIFVAHNAPFDWRFVSEEVRR-------GSGQEL 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 RL + + + LD V G+ + RH A GDA ATA + + Sbjct: 113 SGPRLCTV---RFARAALPQLSRRSLDHVTRYFGIEIAARHRAAGDALATAHALCRMLNI 169 Query: 183 AAAH 186 A+ H Sbjct: 170 ASEH 173 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 18/180 (10%) Query: 4 QLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYY 61 VVD+ETTG D ++ V G+ + +++ P+ +++ G Sbjct: 6 TYAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIV--ETYVSDINPQREVPERIIQLTGIT 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + ++ L G F N FD + + P + Sbjct: 64 PERLKKA----PTFDQVSSKLYKLLSGTVFVAHNVNFDFPFLNGEFQRVGYPELDIEA-- 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + ++ + L ++ + + H+A DA ATA +L Sbjct: 118 --------IDTVTLSQILLPTLSSYRLQDLSTYFNIIHNHPHTADSDALATAKLLLILLR 169 >UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2X3_9BACT Length = 185 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 18/178 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + D+ETTG+ VE+ + VD SL + V +A+ ++ + Sbjct: 8 PFTIFDVETTGMSPVRDRIVELAAVRVDRDGSLSRFQSL-VNPGVRIPAQAVAVHHITDD 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A + ++ +T N FD + +P +W Sbjct: 67 MVAGA----PSFARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLP--------LW 114 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAFCFDM 178 + L + K L ++ + N H A D T ++ Sbjct: 115 KGK--TLDSLRLLKTTFPNLPSYNLQSLRAYFQLETEKGMNAHRAGADVEWTRQVLEI 170 >UniRef50_A3V111 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V111_9RHOB Length = 469 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 66/186 (35%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 +V D ETTG + V++G L V G+ + A P + ++ + Sbjct: 275 TYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLVNPGRAIPASSTAVHRITD 334 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + + R N FD + R M F Sbjct: 335 AMVKDA----PDMVHAGRKFHSFARDAVLVAHNAPFDLSFFHRYAPKIGMKF-------- 382 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV--VNRHSAIGDAAATAFCFDMLR 180 H L + A + TE LD +A+RLG+ + +RH+AIGDA AT F + Sbjct: 383 DHPVLDTVLLSA---VLFGITEGHTLDELAKRLGIELLDKHRHTAIGDAIATRDIFLRMI 439 Query: 181 HTAAAH 186 A Sbjct: 440 PMLEAR 445 >UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycoplasma RepID=B3PN84_MYCA5 Length = 1438 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V DLETTGL +E G ++ G ++ P EI Sbjct: 402 SQTYVVFDLETTGLSPRFNEIIEFGASIIENGIIKESHQFF-IKPTKPIPPSITEITKIT 460 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ D L+ N FD + + Y Sbjct: 461 DNTVANGY----SQEEGVRKIYDILKNRICVAHNAKFDINVCKENFLKYG---------- 506 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDML 179 + + ++ + + A + ID + L+ VA++ V H A DA A + ++ Sbjct: 507 LDNSKIIGIDSLAIARFLIDEAKSYRLEIVAKKFNVYYARNEAHRADYDANVLANVWILM 566 Query: 180 R 180 Sbjct: 567 I 567 >UniRef50_A1KUV1 DNA polymerase III, epsilon chain n=18 Tax=Neisseria RepID=A1KUV1_NEIMF Length = 253 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 62/185 (33%), Gaps = 13/185 (7%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ I++D ETTGL D VE L + + H+ V +A ++G Sbjct: 10 MIQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHG 69 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L E A ++ D+LRG N FD + + +P Sbjct: 70 LTIEVL--EGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLP-----T 122 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + D A A P + LDA+ R V R H A+ D + Sbjct: 123 VEELGCTVTDTLAMAREMF---PGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYL 179 Query: 178 MLRHT 182 + Sbjct: 180 AMTRR 184 >UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X67_LACSS Length = 944 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 57/188 (30%), Gaps = 18/188 (9%) Query: 1 MAKQ--LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M ++ VVDLETTG + ++ G V G+ + + V L K + Sbjct: 1 MNRETIYAVVDLETTGTNIKDGDRIIQFGCALVQNGKIIQTISQ-DVNPLRDVPTKIQHL 59 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 L + + L G F N FD + + + Sbjct: 60 THITADQLELA----PIFEDLAPTLVEILSGTVFVAHNINFDLPFLNGELTRVGLQPLD- 114 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 LA + ++ + L + + L + N H A DA TA F Sbjct: 115 ---------LAGIDTVELAQIILPEAPSYRLQDLTQLLEIEHDNPHQADSDALVTAKLFL 165 Query: 178 MLRHTAAA 185 L A Sbjct: 166 KLSARLQA 173 >UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=A0K225_ARTS2 Length = 406 Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 15/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M VVD+ETTGL E+ +++VD ++ V P+ I+G Sbjct: 1 MNAGFAVVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETLVNPQRDLGPQ--HIHGI 58 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L +V + L G N FD V+ + + Sbjct: 59 R----AADILHAPVFGDIAHDVMELLAGRVLVAHNVHFDYRFVSHELGRAGLELPF---- 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + L + G+ + N HSA DA A A Sbjct: 111 ----EVHDCLCTMKLARRYLPGAGR-SLKDCCDSFGLNLANAHSAGDDAEAAAHVLSNYL 165 Query: 181 HTAAAH 186 + + Sbjct: 166 RMDSGN 171 >UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bacteria RepID=A1BGS1_CHLPD Length = 219 Score = 152 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 18/182 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA ++V+D ETTGL +E+G + V+ GE + + G Sbjct: 5 MADSVVVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLM-NPGFRISRFIESYTG 63 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E +++ G+ N +FD + + + Sbjct: 64 ITNEMLSG----QPCCEEVMTEFSEFIAGHNIVAHNASFDRRFLDFELKRAKRVYEGACC 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDM 178 + + + L + G+P + H A+ DA TA + Sbjct: 120 -----------CSLLVSRRIYQDSPNHKLQTLVSHAGIPEIGSFHRALADAEMTAHLWMS 168 Query: 179 LR 180 + Sbjct: 169 MI 170 >UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M5F0_CAPGI Length = 453 Score = 152 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 58/183 (31%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG E+ + D + + + D + + G + Sbjct: 2 YAIIDIETTGGKMGEEAITEIAIYRFDGQKVTDRFISL-INPEKKIDDFVVRLTGISNKT 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + + + N +FD +++ + + Sbjct: 61 VRQA----PKFYEVAKRIVEITEDCILVAHNASFDYRVLSLEFRRLGFDYQRS------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + + L + LG+P++NRH A GDA AT F +L Sbjct: 110 ----TLCTVEMSQRLLPDEPSYSLGKLTRSLGIPLLNRHRANGDAMATVHLFKLLLDRDT 165 Query: 185 AHL 187 + Sbjct: 166 QKI 168 >UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-related DNA helicase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHT3_ANOFW Length = 880 Score = 152 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 18/176 (10%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEIN 58 M + +VVD+ETTG +++G + ++ + F + E+ ++ Sbjct: 1 MNDRFVVVDIETTGNAPKKEDRIIQIGFVVIEGDKVKKRFSTFVQPERDIPL--FIQQLT 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G ++ + + G F N FD + + + + Sbjct: 59 GIDHAMVHDA----PPFQHIAAMLVEQWEGAYFVAHNVQFDWAFLQEEFIRSGIQPPTCR 114 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + L + + L+ +AE L H A DA ATA Sbjct: 115 L----------LDTVELARFLMPTQSSYKLNHLAEALSFAHDRPHQADYDAEATAQ 160 >UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA Length = 307 Score = 152 bits (386), Expect = 5e-36, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 21/188 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + V+D ETTGL +E+G+L V E + + ++ D + G Sbjct: 18 LIDDYCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDRYDQL-IKPSIEVDGFITALTGI 76 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + +V ++ + G N +FD + Sbjct: 77 TNDMLEDM----PSISSVKNDVLSFISEDIILGHNTSFDMRFLNEGFK-----------E 121 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ + + + + L + + LG+ N H A+ D AT +D ++ Sbjct: 122 QLSNQYMDT---MQFARKLYPELKHHRLSDLTDYLGL-HNNEHRALADCIATKELYDAVK 177 Query: 181 -HTAAAHL 187 +L Sbjct: 178 SRMVEKNL 185 >UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TRJ1_9FLAO Length = 229 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 14/184 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V D ETTGLDY + +G + V + + + +P + +I+G Sbjct: 42 QNTRFVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQDFYNPDSAQIHGI 101 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++G Y + A + D++ + G + FD +V + + G Sbjct: 102 LKQGNYLKV----NEKEAIAQCLDFIGTDILVGHHVGFDVAVVNQSLKRAGL-------G 150 Query: 121 RVWHHRLADLAAYAAGKLNIDP---TELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 R+ + +L Y ++ + LD +AE L +P+ +RH+A GD+ TA F Sbjct: 151 RLKNRQLDTEILYKRLVHPVNRPLQDKRYTLDELAEALKIPLHDRHTAAGDSLITALAFI 210 Query: 178 MLRH 181 + H Sbjct: 211 KIVH 214 >UniRef50_Q9ZX22 Gp57 n=2 Tax=unclassified Siphoviridae RepID=Q9ZX22_BPMT4 Length = 177 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 101/187 (54%), Positives = 125/187 (66%), Gaps = 10/187 (5%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +QL+VVD ETTGL D A +EV +N+DTG L+FVP +T EQLA A P AM++N Y Sbjct: 1 MTRQLVVVDCETTGLH-DGAAILEVAAVNIDTGAELHFVPFVTREQLAQAQPMAMQMNRY 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 YERG+++ L+ T A+ ++ + L GNTF GSNPAFDS ++A Sbjct: 60 YERGIWQRRLSPDSTDAAYWKLANMLAGNTFGGSNPAFDSRLLAAAM---------PDGA 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 WHHRLADLAA+ AGKLN+DP EL GLDAV ERLGV V +RHSA+ DA ATA CF +LR Sbjct: 111 PEWHHRLADLAAFTAGKLNLDPVELPGLDAVCERLGVTVSDRHSALADAHATATCFTILR 170 Query: 181 HTAAAHL 187 AA L Sbjct: 171 EIPAAAL 177 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 22/183 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-ING 59 M++ +V+DLETTGLD VEVGL+ V+ G+ + + + P ++ + G Sbjct: 1 MSRTFVVLDLETTGLDPQADEIVEVGLVRVEDGKP--GAVFHALVRPSRPLPARIKSLTG 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + V +L G + FD + R Sbjct: 59 LDDADLAE----RPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAG----------- 103 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + +L + L+ + L +P H A+ DA A A F L Sbjct: 104 ----YRATQAYDTVDLARLVLPGLPSYRLELLCAHLDLPERPGHRAMEDARAAAGLFTAL 159 Query: 180 RHT 182 Sbjct: 160 LER 162 >UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC319F Length = 234 Score = 152 bits (385), Expect = 6e-36, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 17/185 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K + +DLETTGL +E+G + G+ + + + + EI G Sbjct: 1 MIKDFVAIDLETTGLSPYDNKIIELGAVRYRDGKPVD-QYNTLINPGVHIPERITEITGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + +++ + G N FD T +A +S+ +S Sbjct: 60 DDDMVSKA----PYIDDELDRIMEFIGNDVILGHNVIFDYTFIAGALAGHSIEYSAEA-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + K + E + L+ + E + V H A DA + A + L Sbjct: 114 ---------IDTLKFAKKVLPANESKNLEHLCEMFDI-VTIHHRAYEDAMSAANVYFRLC 163 Query: 181 HTAAA 185 + Sbjct: 164 ELSGE 168 >UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EC49_MACCJ Length = 850 Score = 152 bits (384), Expect = 7e-36, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 17/179 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 M ++ VVD+ETTG + D+ ++VG+ V + + + I A ++ + Sbjct: 1 MNRKYAVVDIETTGNNLDSDEIIQVGIAIVQNKKIIETYDTFIACNNEIPAFIQS--LTK 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + L G F N FD + + F P Sbjct: 59 ID----AFDLVDAPNFSHVASHIIKLLDGCVFVAHNVQFDLRFLQKYFSEAGHKFQP--- 111 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + K+ E L ++A+ LG+ + + H AI DA ATA F Sbjct: 112 ----RYIIDTVD---WFKIVYPSLERYQLKSIADDLGIELSSAHRAIDDAVATAEVFIE 163 >UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, putative n=28 Tax=Streptococcus RepID=Q04L99_STRP2 Length = 816 Score = 152 bits (384), Expect = 8e-36, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 17/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VVDLE T A ++VG++ ++ GE + V D E+ G ++ Sbjct: 7 RYVVVDLEATSTG-SKAKIIQVGIVVIEDGEIVD-HYTTDVNPHEPLDAHIKELTGLTDQ 64 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + ++ D + F N FD+ ++A + Sbjct: 65 RLAQA----PDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGY--------ELR 112 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + R+ + ++ E L + LG+P+ + H+A+ DA ATA LR Sbjct: 113 NPRVDTVE---LAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169 Query: 184 AA 185 A Sbjct: 170 AQ 171 >UniRef50_Q3K0L7 Exonuclease, DNA polymerase III, epsilon subunit family n=8 Tax=Firmicutes RepID=Q3K0L7_STRA1 Length = 604 Score = 152 bits (384), Expect = 8e-36, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 53/181 (29%), Gaps = 21/181 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I D+ETTGL+ VEVG + + G+ + + V IN R Sbjct: 52 RFIAFDIETTGLNSQQDRIVEVGAVLFENGKVVDSYESL-VNAKVNISADVTRINNITNR 110 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN-----TFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + + E+ ++L N FD + Sbjct: 111 MIKNA----PSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGY------ 160 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + L + + N+ + VAE + N H A DA Sbjct: 161 -----NGEIKYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILTK 215 Query: 179 L 179 L Sbjct: 216 L 216 >UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGT7_BDEBA Length = 217 Score = 151 bits (383), Expect = 8e-36, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 52/179 (29%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I DLETTG VE+G + G+ ++ L P A +NG + Sbjct: 14 RFIAFDLETTGTVPGVDQIVEIGAVRFIDGQPEAIFA-TLIDPLRPIPPGASAVNGISDD 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ + N FDS + + Sbjct: 73 MVKGK----PLIDTILPAFAEFCGEDVLVAHNAPFDSQFLIADIKKH----------ETT 118 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R L + + L + + L +P N H A DA F + Sbjct: 119 APRGVILDSLPIARKVFPGLPNYKLGTLVQHLKIPTSNFHRAEEDATYLGHMFSQMMKR 177 >UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria RepID=DPO3_STRPF Length = 1465 Score = 151 bits (383), Expect = 9e-36, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D+ETTGL +++ + G + ++ E+ G ++ Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEF-IDPGHPLSAFTTELTGITDK 484 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L QD+ + + N +FD + + +P ++ Sbjct: 485 HLQGAK----PLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLP-------KIT 533 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF-CFDMLRHT 182 + L + + GL + +R V + + H A DA AT F L+ Sbjct: 534 QPVIDTLE---FARNLYPEYKRHGLGPLTKRFQVSLDHHHMANYDAEATGRLLFIFLKDA 590 Query: 183 AAAH 186 H Sbjct: 591 REKH 594 >UniRef50_B1VHF1 Putative exonuclease n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VHF1_CORU7 Length = 270 Score = 151 bits (383), Expect = 9e-36, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 64/183 (34%), Gaps = 5/183 (2%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLETTGL+ T +E+ +L V+ G + H + + ++ ING + Sbjct: 90 RCAVVDLETTGLEPATDRVIEIAVLTVEHGSIV-GSFHCLLNPECSIPGESSNINGLRDD 148 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A E+ + T G N FD +A + + + Sbjct: 149 DVAN----SPTFAEVAQELLPHVLNRTLVGHNVKFDVGFLAAEYARLGHADAARVLTEQC 204 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + AA A + + L +A G+ H A DAA T L A Sbjct: 205 LPQALCTAATARELIPREAVGRYTLANLAAHCGLASSPAHRAQQDAATTFDLTHRLYTIA 264 Query: 184 AAH 186 Sbjct: 265 QEP 267 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 151 bits (383), Expect = 9e-36, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 58/188 (30%), Gaps = 20/188 (10%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG + ++VG + V GE + + A ++ G Sbjct: 25 YSVVDLETTGTSVNHGDRIIQVGCVLVQDGEIIN-HFETKINPRVAVPRHITQLTGIKNN 83 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + G + L G F N FD + + P Sbjct: 84 DVRNA----PLFEDIAGTLYSLLSGTIFVAHNVNFDFPFLNAELERAGYPSLS------- 132 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF----DML 179 + + ++ + + L + L + + HSA+ DA ATA L Sbjct: 133 ---IKAIDTVTLSQILMPTVKSYRLRDLTSSLSIEHDHPHSAVSDAEATAHLLVDLMKQL 189 Query: 180 RHTAAAHL 187 R L Sbjct: 190 RELPTLTL 197 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 151 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 18/174 (10%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 K+ IVVDLETTG ++ V++G+ L + + E+ A E+ G Sbjct: 4 KRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTFLNPEKPIPA--FIQELTGI 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + L F N +FD T + R+ + Sbjct: 62 SPKDVKNA----PLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISLGK---- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + L ++ + L +++ + H A DA TA Sbjct: 114 ------MKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPHRADSDAEVTAD 161 >UniRef50_A3J795 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J795_9FLAO Length = 202 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 12/171 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ +V D ETTGLDY + + +G + ++ + + +++ I+G + Sbjct: 32 KRYVVFDCETTGLDYKSDRILSIGAVAIENNQIIVGDFMEVFLLQDVFKAESVPIHGILK 91 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 G + + A A ++++ T G + FD ++ + L VG++ Sbjct: 92 EGKEEKIVE----AEAIIRFLEFIKDATLVGHHVDFDIEMINQGLAR-------LEVGKL 140 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + + Y K + + LD + + + +RH+A GDA TA Sbjct: 141 KNQAMDTDVMYQKLKY-LPQEQHSSLDELCDIYKIRKSDRHTASGDAFITA 190 >UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7J6_HYDS0 Length = 196 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 15/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D+ETTGL+ D +E+ V+ H + + EI G Sbjct: 12 YVVLDIETTGLNPDEHEIIEIFAFLVEKERITK-QFHRLINPGFFIPRRITEITGITNAM 70 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + + ++++ G N FD + +++ Y Sbjct: 71 L----VGQPKVEGIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNS------- 119 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ K I + L AVA+ + H A DA T F+ L Sbjct: 120 ---PNICTLELSKKLIPNLKSYKLSAVADYFNIKYERLHRAKDDALLTYNIFNKLMDI 174 >UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJV7_ACIFE Length = 223 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 57/186 (30%), Gaps = 20/186 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI----TVEQLAAADPKAMEING 59 +VVDLETTGLD + +E+G L V G+ + T + P + G Sbjct: 24 TYVVVDLETTGLDPERDQIIEIGALEVTAGKRGRTFSTLLQPRTPLEGQYVSPFITRLTG 83 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L Q A +L G N FD Sbjct: 84 ITNEMLAAA----PQPRQALEAFGKFLGSRVAVGYNVGFDMG-----------FLQQQFQ 128 Query: 120 GRVWHHRLAD-LAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 +++ D + + + L+ +A V H A+ D T CF Sbjct: 129 DQLYRPLANDWVDVLPMAQTLFPLWDHHRLNNLAAWYHVENKEAHRALSDVETTETCFRK 188 Query: 179 LRHTAA 184 L+ A Sbjct: 189 LKEDAG 194 >UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplasma RepID=Q600A7_MYCH2 Length = 1469 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 17/187 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + ++ DLETTGL VE G + + G + ++ P +I G ++ Sbjct: 410 KFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKHQFF-IKPTGKIPPAITKITGISQK 468 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A++ + A ++ ++ + N AFD + + + + Sbjct: 469 MIDETAISWEI---ALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQ-------KAKKSLK 518 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDM-LR 180 + + L + + L VA+R + H A DA + L Sbjct: 519 NPIIDTLE---VSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLA 575 Query: 181 HTAAAHL 187 + ++ Sbjct: 576 ELKSQNI 582 >UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capnocytophaga RepID=C7M4L1_CAPOD Length = 442 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 16/177 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG Y+ ++ + G + + ++ G + Sbjct: 2 YAILDIETTGGKYNEEGITDIAIYQF-NGHEITDQFISLINPERPIQEFVTKLTGINNKM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + G N AFD I+ + F Sbjct: 61 LRNA----PKFYEVAKRIVEITTDCIIVGHNAAFDYRILQTEFRRLGYDFVRT------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + I E L + LG+PV +RH A GDA AT F L Sbjct: 110 ----TLCTVELSERLIPNKESYSLGKLVRSLGIPVSDRHRASGDALATLKLFKYLLE 162 >UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO Length = 968 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VVDLE TG + + ++ + + + + + L + Sbjct: 38 QTYAVVDLEMTGTNPNGSERLIQFSCVFTEGNKIVN-TFSTLINPLRKIPEDVQNLTNIT 96 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++ + G + L F N D + + P Sbjct: 97 D----KDVKSAPTFDEVAGTIYALLSDTVFVAHNIELDYRFLNSEFERIGFPKLD----- 147 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + ++ L +A LG + H A DA TA F +L+ Sbjct: 148 -----LEGIDTVQLAQIAFPTLASYRLGDLAHFLGFKHKHPHHADSDAFVTAELFILLQK 202 Query: 182 TAAA 185 A+ Sbjct: 203 KLAS 206 >UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRP3_9BACT Length = 193 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 18/179 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 + +D+ETTGL VE+G + G F ++ + + +A+ I+G + Sbjct: 10 FVAIDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIPS--EAVAIHGITDE 67 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + +L+ NP+FD + ++ + V Sbjct: 68 MVEGA----PGLSEASIALASFLKDEEPMVFHNPSFDLGFLDANMRAIKGSWNVMPVF-- 121 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D A + + L A+A G+ H A+ D +A F+++ Sbjct: 122 ------DTCGLA--RKAFPGIKGYSLVALARHFGLSGGGHHRALEDCRYSASLFNLILE 172 >UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit n=4 Tax=Lactococcus lactis RepID=D2BLE9_LACLK Length = 794 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 76/177 (42%), Gaps = 17/177 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 + VVDLE T +++G++ V+ GE + F + + P+ E+ G + Sbjct: 6 RYAVVDLEATDAHSSENKIIQIGIVLVEDGEIVETFSTEVNPHEP--LLPRISELTGLSD 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L T + + G+V++ L + F N FD ++ + + + F+ Sbjct: 64 KQL----KTAPEFSEVAGKVRELLTDSVFVAHNARFDYGLLEKSFLNAGLEFNE------ 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + ++ E GL++++E+L + + H+A+ DA ATA + Sbjct: 114 ----MLRVDTVDLARVFYPTFEKYGLESLSEKLDLAHDHPHAAVSDAYATAELLLKI 166 >UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1U9_9ACTO Length = 206 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 52/185 (28%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ VD+ETTGL D+ E+ + G+ + V + G + Sbjct: 16 TLVSVDIETTGLG-DSDAITELAAVKYQKGQVVE-TFSSLVNPGRQIPVFITRLTGIDNQ 73 Query: 64 GLYREALTEQQTAVAWGEVQDWLR--GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++ + N FD+ + + + Sbjct: 74 LVADA----PTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQF----- 124 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D ++ L + L +A G+ N H A+ DA + L Sbjct: 125 ---PASIDTVFFSRALLPRPQVQNHRLGTLAHHFGIKNPNAHRALADAYTCLELYKCLLD 181 Query: 182 TAAAH 186 A Sbjct: 182 VLHAA 186 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 22/185 (11%) Query: 9 DLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYERGLY 66 DLETTG + +++ ++ + E + A P ++ + + Sbjct: 2 DLETTGHSPANGDRMIQIAIVIMKDWEIER--TYTKFINPGKAIPSFIQDLTHITNEDVK 59 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + + L F N FD + + + +P W + Sbjct: 60 DSY----PFEEHADYIYELLADCVFVAHNADFDLSFLQAEFKRAGLPK--------WQGK 107 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF----DMLRHT 182 D A K+ + L +A L + + N H A DA ATA F L + Sbjct: 108 KMDTVELA--KILFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKCCWKELLNL 165 Query: 183 AAAHL 187 L Sbjct: 166 PQLTL 170 >UniRef50_C1QET6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QET6_9SPIR Length = 252 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 60/177 (33%), Gaps = 14/177 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTGL +E+G + + + + T+ ++ + Sbjct: 61 YTIIDVETTGLKPREDKIIEIGAIKYRDNKEIDY--FSTLVKVDYIPNFISSYTNITNKM 118 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A + D++ + G N FD + + + + Sbjct: 119 VKNA----PRVDEAIKQFYDFVGDDILVGYNVPFDIKFLYDAL------YEVSNGELLLN 168 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D+ A K + E VA + + N H A+GD + ++ L+ Sbjct: 169 NDFIDVMYIA--KRVLKDLENYKQVTVASYYNISIDNLHRAMGDCKLCSAIYECLQK 223 >UniRef50_C0GM30 DNA polymerase III, epsilon subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GM30_9DELT Length = 249 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 11/187 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 +V+D E TGL+ V +G L + PK ++ I+G Sbjct: 51 DFVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACPTRDVPKQSIVIHGITP 110 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 + A + D+ + G N D +++ R+ + + Sbjct: 111 SEAQKA----PPLKEALQGLLDFCGNSIIVGHNINLDISVINRELKKEFGGELHNPCIDT 166 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ G L ++ G+P+ H+A DA TA+ F L Sbjct: 167 MRLARQYREGQWT---GAYECYEEYSYNLRKLSREFGLPLFTEHNAFTDALQTAYLFIYL 223 Query: 180 RHTAAAH 186 H + Sbjct: 224 VHKMQVN 230 >UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V2X6_9AQUI Length = 206 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 67/181 (37%), Gaps = 14/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++DLETTGL +EV + +G + + H+T + K + + G Sbjct: 11 TFVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQLHHLTKPRENFIPSKVINLTGITNA 70 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + EV ++L+ + N FD + ++ + Sbjct: 71 MV----IDKPYFEDIYPEVYNFLKDSIVVAHNAKFDISFLSEVHK----------IVFKN 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + RL + + + + L ++ LG+ +H A+ DA AT F + Sbjct: 117 NLRLHYICTDNLARRIFPEIQKKSLSSLTNYLGINFKQKHRALSDAQATLQAFQTMLEYL 176 Query: 184 A 184 Sbjct: 177 Q 177 >UniRef50_C0WGE7 Possible exonuclease n=2 Tax=Corynebacterium RepID=C0WGE7_9CORY Length = 1118 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 16/179 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +K+ VVD ETTG T +E+G++ +D + V+ ++ Sbjct: 4 SKRYAVVDFETTGFG-STDRVIEIGVVLLDHNREVESTWETLVQPQRDIPNSF--VHRIT 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + GE + L G T N F+ + R+ + + Sbjct: 61 PT----DVVDAPLFGEVAGEFFELLNGRTVVAHNAPFEVRFLQREFSNLGVAWPNYGAWV 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V RL P E L+ E +G+ HSA+ DA ATA F L Sbjct: 117 VDTKRL---------FQQTYPGEGTTLEHALEVVGITNARPHSALADALATAELFAQLV 166 >UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma RepID=DPO3_UREPA Length = 1442 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 63/182 (34%), Gaps = 18/182 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ D+ETTGL + +E G + + + + ++ + + + Sbjct: 406 NATYVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFIKPIQQINENVTNLTNIS 465 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 + + A ++++ + N FD + ++ + + + Sbjct: 466 QEMVNNAI----DEKTALLKIKEIFDDHILVAHNGINFDINFINQRLLKWGLE------- 514 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDM 178 + + + L I+P + L A+ ++ V + H A DA A F + Sbjct: 515 PLKNPSIDTLMIS----RAINPFKSHRLGAICKKYEVDYNDESAHRADYDAIVLADVFKV 570 Query: 179 LR 180 ++ Sbjct: 571 MK 572 >UniRef50_C9NHS4 DNA polymerase III, epsilon subunit n=2 Tax=Streptomyces RepID=C9NHS4_9ACTO Length = 346 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 60/180 (33%), Gaps = 17/180 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL + + +D + + V P + I+G Sbjct: 32 YAVVDVETTGL-ARDDRIISAAVYRLDARGDVEDHWYTLVNPERDPGP--VWIHGLTSDV 88 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E+ + L G N AFD +++AR+ V Sbjct: 89 LEGA----PLFPQVAAELSERLAGRVLVAHNAAFDWSMIAREYARA----------AVTA 134 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L A K P L+++A GV + H A+ DA A F H AA Sbjct: 135 PVEQRLCTIALAKELRLPLPNHKLESLAAHFGVVQQHAHHALDDARVLAEAFRPSLHAAA 194 >UniRef50_B0RTE6 DNA polymerase III epsilon chain n=11 Tax=Proteobacteria RepID=B0RTE6_XANCB Length = 245 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 14/178 (7%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D ETTGL++ VE+G + + H + +P A E+ G Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDCDFEPGAQEVTGLTLEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A E ++ G N AFD + + F + + Sbjct: 64 LADK----PVFAEVVEEFLAYIDGAELIIHNAAFDLGFLDNELSLLGDQFGRI----IDR 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLR 180 + D A + P + LDA+ +RLGV +R H A+ DA A + L Sbjct: 116 ATVVDTLMMARER---YPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALT 170 >UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=C0DA77_9CLOT Length = 255 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 52/181 (28%), Gaps = 16/181 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D+ETTGL+ E+ L V G + V + +E+ G + Sbjct: 16 YVAIDIETTGLEPRLDKITEIAALRVVDGA-VEGRFVTLVNPGRPLGERIVELTGITDGM 74 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L G + + G N FD + + R V + F Sbjct: 75 LAGA----PAIGDVIGPLVRFCGDLPLLGHNILFDYSFLKRAAVNQGLDFQREG------ 124 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + + + + L A + V H A DA + + L Sbjct: 125 -----IDTLNLCRAFMPGEHKKNLSAACAFYCIEQVEAHRAEADALSAHLLYQKLLEGRG 179 Query: 185 A 185 Sbjct: 180 E 180 >UniRef50_D1B3F1 DNA polymerase III, epsilon subunit n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3F1_SULD5 Length = 260 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 17/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VD+E G +E+G + V+ G+ + ++ + +++ G Sbjct: 70 KFCIVDIEANGSKPALDAIIEIGAVMVEKGKIVG--EFSSLAKTDVLPESIVQLTGITLE 127 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + +++ F N FD ++ G + Sbjct: 128 ELS----FAPSLNSVLEGFRLFIKDAVFVAHNVNFDYYFISHSLEMAGF-------GPLL 176 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + RL + GL A+AE LG+ N H A+ DA AT Sbjct: 177 NRRLDTIDL----ARKCIEAPKYGLSALAEHLGITFENHHRALYDAKATTEVLLH 227 >UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=C6A933_BIFLB Length = 188 Score = 149 bits (378), Expect = 4e-35, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 59/178 (33%), Gaps = 14/178 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I +DLETTG E+G + V G+ + + V + E+ G Sbjct: 11 YISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQL-VNPGRRVSARITELTGISNEM 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + G+ W + G N FD + + + +V + Sbjct: 70 LED----QPVIEDILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPIDT 125 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L P+E L + +R G+ V H A+ DA T C + R Sbjct: 126 MHIDRLL---------FPSERHRLVDLIQRYGIGDVEEHRALSDATQTYQCLEWQRRY 174 >UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=A8H432_SHEPA Length = 215 Score = 149 bits (378), Expect = 4e-35, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 50/186 (26%), Gaps = 18/186 (9%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A +IV+D ETTGL +E+G + + G+ + + G Sbjct: 15 ADTVIVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDRFQQLM-NPGFRISGFIESYTGI 73 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + D++ N +FD + + + + Sbjct: 74 SNAMLADA----PSCEEVMAQFADFIGDYNLVAHNASFDQRFLDAELKRINCHYLGQFA- 128 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDML 179 + + L ++ + H A+ D+ TA + + Sbjct: 129 ----------CSMLIARRLYQAAPNHKLGSLVSYKNIQHDGVFHRALADSEMTASLWLAM 178 Query: 180 RHTAAA 185 Sbjct: 179 LEDLQQ 184 >UniRef50_Q0BM06 DNA-directed DNA polymerase n=20 Tax=Francisella RepID=Q0BM06_FRATO Length = 238 Score = 149 bits (378), Expect = 4e-35, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 13/184 (7%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M++Q + +D ETTG DY +E G + V H + A+ I+G Sbjct: 9 MSRQ-VFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYKVEAGALAIHG 67 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E+ ++LRG N AFD + + + + Sbjct: 68 LTNEFLADK----PLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSL--LKNNKYGT 121 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 ++ D A K P + LDA+ +R + +R H A+ D+ A + Sbjct: 122 LEQNVAKIVDSLDLARKK---HPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYL 178 Query: 178 MLRH 181 + Sbjct: 179 AMTG 182 >UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helicase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC75 Length = 958 Score = 149 bits (378), Expect = 4e-35, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 51/178 (28%), Gaps = 15/178 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + V+D ETTG + ++VGL ++ S+ V V P + G + Sbjct: 2 KFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLTGISDS 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E+ L G N AFD + Sbjct: 61 DVADA----PSLEEMMMELVPMLDDVVLVGHNVAFDFNFLQNALDRCGY-------LPFS 109 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + K+ L V+ G+ H A DA ATA+ Sbjct: 110 GRILDTMHFL---KICFPSLPSYQLGMVSSHFGLEHDRPHQADSDALATAYALLKCLE 164 >UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HRT4_9SPHI Length = 456 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 57/183 (31%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VD+ETTG T E+ + + GE + + + G Sbjct: 2 EFAIVDIETTGGAASTCGITEI-AILIHDGEKVIEEFESLINPEQDIPTYITGLTGIDNS 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ D L G F + FD V F Sbjct: 61 MVSDA----PTFEELSDKLWDLLHGRVFVAHSVNFDYGFVRACFNAIGREFK-------- 108 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L + I L + E +P++ RH A+GDA ATA FD + Sbjct: 109 ---VDKLCTVRLARKIIPGLSSYSLGRICETQKIPILARHRAMGDARATAILFDQMLKKD 165 Query: 184 AAH 186 + Sbjct: 166 SQT 168 >UniRef50_B0TF42 DNA polymerase iii polc-type n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TF42_HELMI Length = 255 Score = 149 bits (376), Expect = 5e-35, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 28/188 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNV-----------DTGESLYFVPHITVEQLAAADP 52 +V D ETTGL + +G + + DTG+ F + + Sbjct: 61 TFVVFDTETTGLSVPNDDVIALGGVALPPGGEGAEWTEDTGKVRVFDRLVNPHRPIPVL- 119 Query: 53 KAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM 112 A EI G + ++ ++ + D++ G AFD + + Sbjct: 120 -AREITGIDDDMVF----SQPTIYPVLDDFLDFIDGAVLVAHGIAFDVGFLDKYLRPL-- 172 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 +++H + + ++ LDA+ G+ RHSA+GDA T Sbjct: 173 ------RTKLYHPVIDTI---TLSRVLEPFRAEHSLDALVADYGITPRRRHSALGDAQMT 223 Query: 173 AFCFDMLR 180 A F + Sbjct: 224 ADLFAAML 231 >UniRef50_Q3AAH9 Putative DNA polymerase III, epsilon subunit n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AAH9_CARHZ Length = 222 Score = 149 bits (376), Expect = 5e-35, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 56/185 (30%), Gaps = 15/185 (8%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 + V+DLETTGL + +G + + G H V + G Sbjct: 34 LNLTYTVIDLETTGLKPFQGDEIIAIGAVKIINGNITRPAFHAYVNPQREIPEVVQRLTG 93 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + D+ R + G + FD + + + Sbjct: 94 ISPKTVQNA----PPLTNTLTTLLDFARNSVIVGHSVNFDLAFLNKHLSSL--------T 141 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 G+ RL D L+ A++ + + RH+A+GDA A F Sbjct: 142 GKKLTPRLLDTVDLGIY--LFPREPNYSLENFAQKFAISLQGRHTALGDAVICAKVFLNF 199 Query: 180 RHTAA 184 Sbjct: 200 LKILE 204 >UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiaceae RepID=B4S8Q4_PROA2 Length = 180 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 62/186 (33%), Gaps = 28/186 (15%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 + ++I VD+ETTGL +EV + + G F I V +I+G Sbjct: 10 SGRVIAVDVETTGLSPRRGDRVIEVAAVAIVNGVIEEHFCCLINVNAPIPTV--VQKIHG 67 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L E E W E ++ N N FD + + + + + Sbjct: 68 ITPELLAGEKPPE----AVWPEFLKFIGSNILIAHNAPFDISFIRNELRFLGLSLLNGS- 122 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL------GVPVVNRHSAIGDAAATA 173 A + + L+ VA + G+ + H A GDA TA Sbjct: 123 ----------QCTLAFSRKKFPQLKNHKLENVARHVLGGMPKGIKL---HRASGDALLTA 169 Query: 174 FCFDML 179 + ++ Sbjct: 170 MIWQVI 175 >UniRef50_C5CEK5 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEK5_KOSOT Length = 180 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYY 61 + +V+D ETTG A +E+ + V E +Y + + P ++ I G Sbjct: 2 EFVVIDTETTGSSPHKGAELIEIAGVVVRDWEIIYEESFNELIKPKRHVPISITMITGIN 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + D++R N FD + + + +G Sbjct: 62 NLMLEDKL----PIEIVLPRFYDFVRDRVLVIQNAPFDLSFLD-------YFGKKIGIGE 110 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + D + + LD + RLG+ +RH A+GDA ATA F + Sbjct: 111 LPNP-FVDTISLSRSLF----RGRHNLDIILARLGIFCEDRHRALGDAVATAKAFIKMVK 165 Query: 182 TAA 184 Sbjct: 166 MIG 168 >UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ART4_RUBXD Length = 560 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 48/161 (29%), Gaps = 18/161 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTG E+G L + G + V +P + G + Sbjct: 32 PYVVFDLETTGSSAREGGITELGALKLVRGRVVDRFS-TLVNPGRPIEPFVARLTGITDE 90 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +++ G+ N FD + +A R +P L R+ Sbjct: 91 MVSGA----PPAREVIPRFEEFAEGSVLVAHNAGFDCSFLAAARGGRGLPNPVLDTLRL- 145 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 +L + L A+ GV H Sbjct: 146 ------------ARLLVPGLRRYRLSALVSHFGVRQAPNHR 174 >UniRef50_UPI0000D530A7 DNA polymerase III subunit epsilon n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D530A7 Length = 226 Score = 149 bits (376), Expect = 7e-35, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 19/186 (10%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D+ETTGLDY +E+G + + + + H + L + ++I+G Sbjct: 4 IILDIETTGLDYKEGHRIIEIGCVEL-NQKEVGSNFHQYINPLKTLTDENIKIHGITNEF 62 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + ++++ + N FD + + S P ++ Sbjct: 63 LEDK----PLFEDVADKFLNFIKDSQIIAHNANFDVGFLNYELEKVSKP-------QIAK 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNR--HSAIGDAAATAFCFDMLRH 181 R+ D A + P + LDA+ ++L V +V+R H A+ DA + L+ Sbjct: 112 DRIVDTVVIARNRF---PGQQVNLDALVKKLKVNSLVDREFHGALKDAKILTDVYLELQG 168 Query: 182 TAAAHL 187 L Sbjct: 169 INQMGL 174 >UniRef50_B5FC60 DNA polymerase III subunit epsilon n=58 Tax=Vibrionales RepID=B5FC60_VIBFM Length = 213 Score = 149 bits (376), Expect = 7e-35, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 16/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYE 62 +L+ +D ETT L+ + A V + + + L H+ + + + +++I+ Sbjct: 29 ELVSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPPQSLNSDSIKIHQLRH 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 + L+ A ++ +++ G + +D I+ R + + +P S + V Sbjct: 89 QDLHHGL----SEQQAMTQLLEFIGNRPIVGYHIRYDKKILDRACLRHFSHPLPNSLIEV 144 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++H++L L A L+I +A+++ LG+P RH A+ DA A A + L Sbjct: 145 SHIYHNKLERLLPNAYYDLSI--------EAISKHLGLPQTERHDALEDAIAAALIYVRL 196 Query: 180 RH 181 H Sbjct: 197 TH 198 >UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromonadales RepID=A1ARI3_PELPD Length = 170 Score = 148 bits (375), Expect = 7e-35, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 20/185 (10%) Query: 1 MAKQLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M L VVD+ET+GL +EV + + G+ + + + + P A ++G Sbjct: 1 MESGLAVVDVETSGLSPRGGGRVIEVAAVLLREGKVVGELESLLRVN-CSIHPAAARVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + W ++ N FD + + +P + + Sbjct: 60 IGWEMLRHA----PEPEDVWRRFLSFVGRRPLVAHNAPFDMGFIRHELALLGLPLANRS- 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVVNR-HSAIGDAAATAFCF 176 + + L+A+A L +P R H A+GDA A + Sbjct: 115 ----------ICTLRMARRRFPELASHRLEALARHLLGSIPEDCRLHRALGDARLAARVW 164 Query: 177 DMLRH 181 + Sbjct: 165 LAMNE 169 >UniRef50_B4AHF2 DNA polymerase III PolC-type (PolIII) n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AHF2_BACPU Length = 240 Score = 148 bits (375), Expect = 7e-35, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 28/183 (15%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTG-------ESLYFVPHITVEQLAAADPKAM 55 + +V+DLETTGLD+ +E+G + + G E F + +E+ Sbjct: 4 QTYVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHTMVALEEGRDLPEFIT 63 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 + G E L + A E+Q+++ N FD + ++R Sbjct: 64 NLTGITEEDLEDA----PEEWDALDELQNFIGDAIVVAQNAPFDLSFISR---------- 109 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 G + R A + L V +R+G+ + H A+ D AT Sbjct: 110 ----GDIEPERF--YCTRAMARFVEPEL-SASLKDVTKRIGISLDGHHRALNDVEATIEV 162 Query: 176 FDM 178 F Sbjct: 163 FRR 165 >UniRef50_D2L4P4 DNA polymerase III, epsilon subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4P4_9DELT Length = 249 Score = 148 bits (375), Expect = 7e-35, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 59/189 (31%), Gaps = 10/189 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 + VD E TG D V +G + + L T+ + AA P A I+ Sbjct: 48 DFVAVDTELTGFDPRRHALVSIGAVRLRGLSILPGEAFYTLVRPPAAVPRDATLIHRLTG 107 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 L A A D+L G + D + + + + Sbjct: 108 AALADA----PPVAEALAAFLDFLGPAVVVGHHVDLDMGFLNAAARRHMGGELAAPCIDT 163 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTEL--EGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 R+ A A G D E L A+ R G+P H A DA ATA+ F Sbjct: 164 LRLAMALEEKRLAVAGGAGGPDGFERVDYRLPALCRRYGLPGFAAHDARADALATAYLFL 223 Query: 178 MLRHTAAAH 186 L Sbjct: 224 YLARHCGRA 232 >UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019768DE Length = 180 Score = 148 bits (375), Expect = 8e-35, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 59/181 (32%), Gaps = 16/181 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V+DLETTG+ + +E G + V + + + V + +P ++ G Sbjct: 7 LPDDYVVLDLETTGVSWYRDTIIEFGAVKVVDRKPVDTYQQL-VNPMRNLNPFITQLTGI 65 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTV 119 L + W + G N FD + P Sbjct: 66 TPDMLE----PAPTLDTVLPDFLRWCGDDAMIGHNIMQFDIKFIDLAAQRILHHAVP--- 118 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +R+ D + L + +R + V H A+ DA T CF+ + Sbjct: 119 -----NRIIDTLQMSRS--MYPQYNRHRLVDLIQRFDIADVEEHRALSDAEQTQMCFEYM 171 Query: 180 R 180 R Sbjct: 172 R 172 >UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha H16 RepID=Q0JYK3_RALEH Length = 220 Score = 148 bits (375), Expect = 8e-35, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 14/176 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++ +V D+ETTGLD + +E+G + V+ + + + V+ K E+ G Sbjct: 48 LPERFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVLVKPSRKVPKKITELTGI 107 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + E ++ A + + N FD +++ S+ F+ Sbjct: 108 TPEMIEAEGVS---LESAVQDFAKFAGNLRLVSFNAEFDMAFISKAAGKSSITFANPVS- 163 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 A + + L +A+ + + H A+GD A + Sbjct: 164 ----------CALKMSRRAWPDRKSYRLAEIAKDGNLDTSDMHRALGDCQRAAIVY 209 >UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlamydiaceae RepID=B0B7H7_CHLT2 Length = 232 Score = 148 bits (375), Expect = 8e-35, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 20/179 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 LI D ETTG D VE+ + V +A +I+G Sbjct: 4 LIFYDTETTGTQIDKDRIVELAAY----NGTTSESFQTLVNPEIPIPAEATKIHGITTAE 59 Query: 65 LYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRV 122 + + A+ + ++ N N FD ++ R+ + + Sbjct: 60 VADA----PRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRRHG----------L 105 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 +L + + K L + + G H A+ D F L Sbjct: 106 SEPQLRTIDSLKWAKKYRTDLPQHSLQYLRQVYGFEENQAHRALDDVITLYRVFSALVG 164 >UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WA42_ATOPD Length = 342 Score = 148 bits (374), Expect = 9e-35, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 58/184 (31%), Gaps = 20/184 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VVDLETTGLD +E+ L V G+ + A IN Sbjct: 78 YVVVDLETTGLDVHYCEIIEIAALKVVDGKITE-EFSSLIHPPREIPSGATAINHITNHM 136 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + +++G G N +D+ ++ + Sbjct: 137 VKNA----PTLDKVIPQFDTFVKGFPLIGHNSLRYDAIVLEENFFRRDF---------LC 183 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLRHT 182 + D A L L +A+RL V H A+ D T ++ +R Sbjct: 184 DYVWYDTYKLARQILEPP----YKLINIAKRLNVKQHGKAHRALADCYMTYGIYEKMREI 239 Query: 183 AAAH 186 + A Sbjct: 240 SIAT 243 >UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc RepID=B1MY77_LEUCK Length = 801 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 18/186 (9%) Query: 2 AKQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 K +VVDLETTG +++G+ + + F + Q + ++ Sbjct: 4 NKTFVVVDLETTGQSVAKGGRIIQIGMTFIKNRRIIDHFESFVNPAQPIDRN--IQQLTH 61 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 ++ + +Q+ L N FD + + P Sbjct: 62 ISQKEVKNA----PYFEEIAPVIQNLLTDTVIIAHNVNFDYPYLNDEFARTGFP------ 111 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + + ++ + L + L + + N H A DA ATA F L Sbjct: 112 -ELTNAAIDTV---QLAQILLPTAPGYRLLDLTTYLNITLNNAHRANADAHATALLFLSL 167 Query: 180 RHTAAA 185 A Sbjct: 168 WQRAEQ 173 >UniRef50_Q315G7 DNA polymerase III, epsilon subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q315G7_DESDG Length = 239 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 6/184 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 + V D+E TGLD + V +G + + + T + + A I+ Sbjct: 40 EFAVTDMEMTGLDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQRSMARPATLIHRITP 99 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTVGR 121 L A DW G + D + R + + V Sbjct: 100 AQLQH----SPALAGLLPGFVDWCGQALITGHHVGLDMGFLTRACRRHLGGAPATPCVDT 155 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + PT L ++ R G+P H A+ DA TA+ F L Sbjct: 156 MRLAQAWERERWERSFDPFQPTVSYTLADLSARYGLPQFRAHDALEDALQTAYLFLYLVR 215 Query: 182 TAAA 185 Sbjct: 216 KLKG 219 >UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales RepID=C4PPS2_CHLTJ Length = 250 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 15/180 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D ETTGLD +E + E + V + + A ++ +I+ + Sbjct: 8 EFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVEFL-IHPERAVSAESQKIHKISDA 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + + ++ + + G + FD +++++ Sbjct: 67 MLRDK----PKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLG------ETLLP 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 HH + D A + L+A+A VP H A+ D F L Sbjct: 117 KHHYVIDTLRLAK---EYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMNVKVFKHLTKR 173 >UniRef50_C3RQT5 DNA polymerase III subunit epsilon n=1 Tax=Mollicutes bacterium D7 RepID=C3RQT5_9MOLU Length = 224 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 61/185 (32%), Gaps = 19/185 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAA---ADPKAMEIN 58 ++ +V DLETTG + +E+G + V G + F + K E+ Sbjct: 39 QEYVVFDLETTGFNKKEDRIIEIGAIKVKNGRVVDRFSTLCAPIKGGKPMYISAKITEVT 98 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSN-PAFDSTIVARQRVTYSMPFSP 116 G L + + A WL + N FD + ++ F Sbjct: 99 GIKNVDLLNQI----PESEAVKNFMCWLGESKISVAHNGLKFDIPFLKEACKRSNVEFK- 153 Query: 117 LTVGRVWHHRLAD-LAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + H L L + A +N + +A GV H A+ D A Sbjct: 154 ------FTHILDTMLLSKALNYVNNGNIPNNKQETLARYFGVD-YQAHRAVNDCEALLKI 206 Query: 176 FDMLR 180 FD L+ Sbjct: 207 FDKLK 211 >UniRef50_A0PN08 DNA polymerase n=1 Tax=Mycobacterium ulcerans Agy99 RepID=A0PN08_MYCUA Length = 500 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 57/182 (31%), Gaps = 15/182 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG + VEVGL+ + + + A E +G Sbjct: 98 FAVLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTLINPHRDV--GATERHGIR--- 152 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 R+ L + LRG F N FD + + +P + + Sbjct: 153 -ARDVLGAPAFEAIIPRLLRDLRGRVFVAHNVNFDQRFLLAELRRAGVP--------LDN 203 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L L + L + GV + + H A+ DA ATA L Sbjct: 204 PWLTGLCTMRWAGRLLPAASR-KLPDCCDAAGVFLTDAHRALADARATASLLKYLIDHCG 262 Query: 185 AH 186 + Sbjct: 263 SP 264 >UniRef50_C3XME5 DNA polymerase III subunit epsilon n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XME5_9HELI Length = 267 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 19/186 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 + +VD+ET G + P+E+G L V G+ + F + A +I G Sbjct: 69 ETFCIVDIETNGHNPCVHTPIEIGTLKVRNGKVVDCFESFVF---NAEIPEYITKITGIN 125 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L + A + + +L + F N FD +++ G Sbjct: 126 AQMLENA----PKLASVLEKFKLFLGDSIFVAHNVDFDYNFLSQSLEKCGF-------GY 174 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 +++ RL + + L + E LG+ N H A+ D+ F + Sbjct: 175 LYNPRLCTIKLAQR----VLQAPRYSLGFLNEFLGINHQNLHRALQDSKTALEIFKICLK 230 Query: 182 TAAAHL 187 +L Sbjct: 231 KIPKNL 236 >UniRef50_A4C086 DNA polymerase III subunit n=2 Tax=Polaribacter RepID=A4C086_9FLAO Length = 361 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 16/177 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG ++ E+ + D + + V + + G + Sbjct: 2 YAILDIETTGGKFNEEGITEIAIYKFDGHSVVDQFISL-VNPEKEIQQFVVRLTGINNKM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + + + T N FD I++ + F+ Sbjct: 61 L----RSAPKFYEIAKRIIEITKDCTLVAHNTTFDYRILSTEFDRLGYDFNRN------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L K I L + + LG+P+ +RH A GDA AT F +L Sbjct: 110 ----TLCTVELSKQLILDQPSYSLGKLTKALGIPMTDRHRASGDALATVQLFKLLLE 162 >UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clostridiales RepID=C5EVY5_9FIRM Length = 240 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 49/185 (26%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M I +DLETTGL+ E+ L V G V + ++ G Sbjct: 1 MTNSYIALDLETTGLEPKQEKITEIAALKVVDGVISQRYVTF-VNPGRSLGAYITQLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L +V + G N FD + + V + F Sbjct: 60 TDGMLADA----PPIEELIEDVVKFCGDLPLLGHNIRFDYSFLKHAAVNRRLEFEREG-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + L VP H A DA A + L Sbjct: 114 ---------IDTLTLCRAFMTGETRKNLSCACSYFHVPQSTAHRAQADAEAAHLLYQELM 164 Query: 181 HTAAA 185 Sbjct: 165 SRHGQ 169 >UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular organisms RepID=C1FD33_9CHLO Length = 1473 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 59/189 (31%), Gaps = 20/189 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++V DLETTGL+ D +E+ +NV + + A P + + G Sbjct: 295 VVVFDLETTGLNKDRNRIIEIAAVNVSDPTHQPMSTLVNPGRFA-VPPPVVALTGITNAM 353 Query: 65 LYR-EALTEQQTAVAWGEVQD----WLRGN--TFAGSNPA-FDSTIVARQRVTYSMPFSP 116 + + Q+ A + E D G A N FD+ + + Sbjct: 354 VSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEYRRLGRELPE 413 Query: 117 LTVGRVWHHRLADLAAYAAGKLNID--PTELEGLDAVAERLGVPVVN--RHSAIGDAAAT 172 R D A L + P L+++A GV H A DA Sbjct: 414 -------DWRFVDTLPLARKTLAKEAVPGGSYKLESLAAHFGVDTAGASAHRAEADARML 466 Query: 173 AFCFDMLRH 181 L Sbjct: 467 GDVLQRLVG 475 >UniRef50_C0ECE2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECE2_9CLOT Length = 865 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 15/179 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNV-DTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K ++V D+E+TG D + +++ + + +TG L + + ++ ++ + Sbjct: 497 KNVVVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRS--FEQLLHPSKPVGQSEAVHHFS 554 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L E ++RG G N FD TI+A + +P + Sbjct: 555 DALLAERGGEPP---QVLAEFCSFVRGAVVVGHNVGFDLTILASELSRLGLPPAEYEEY- 610 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L+ +++ L V + H A+ D AT L Sbjct: 611 --------YDTLDLARRFYPDLPNHKLETLSKLLDTEVKSSHDAMDDILATKDVLLHLT 661 >UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kordia algicida OT-1 RepID=A9DMS8_9FLAO Length = 457 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 19/185 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++D+ETTG + E+ + D GE++ V + G Sbjct: 4 NPTYTIIDVETTG---RSNKITEISIFKFD-GETIVDEFTSLVNPNVLIPTHITALTGID 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A EV + + F N FD ++ + + F Sbjct: 60 NAMVADA----PTFAEIAKEVLSITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKK--- 112 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + I + L + + L + + +RH A GDAAAT F +L Sbjct: 113 --------LCTVRLSRALIPGFKSYSLGKLCKSLNIHISDRHRARGDAAATVILFQLLLT 164 Query: 182 TAAAH 186 AA Sbjct: 165 KDAAA 169 >UniRef50_C8SCL6 DNA polymerase III, epsilon subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8SCL6_FERPL Length = 200 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 11/177 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ VVD+ETTGL+ + + ++ +D + L+ + + + +++ +G Sbjct: 3 EEKFAVVDVETTGLNVKKDEIISIAIIPMDGLKILFSEAYYRILKPRRFKIDSVKYHGIT 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + E+ + L G + D + + + F V Sbjct: 63 PRMVEEA----PTFCEVKEEILEKLNERIIVGYSINLDIEFLKKSFKECEVVFECKYVD- 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 +AD+ G+L D + L+ +A++ GV V RHSA+ DA TA F M Sbjct: 118 -----IADVEKL-VGRLFGDYMKDVTLEDLAKKYGVDVAYRHSALSDAYITAQIFQM 168 >UniRef50_Q1V197 DNA polymerase III n=3 Tax=Candidatus Pelagibacter RepID=Q1V197_PELUB Length = 223 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGL VE+G + ++ H + KA+E++GY + Sbjct: 4 VILDTETTGLSVRDGHRIVEIGCIELENLIPTKNRFHCYLNPERKVSEKALEVHGYTDEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L T ++ E ++ N FD + + + ++ Sbjct: 64 LS----THKKFGDIVDEFLVFIENKRLVIHNAEFDLSHLNNELSLLG-------KEKLNS 112 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + D A A K P LDA+ +R + R H+A+ D A + L Sbjct: 113 ENVVDTLALARDKFPGSPI---SLDALCKRYRIDNSKRTQHTALIDCDLLAKVYINLLDQ 169 Query: 183 AAAHL 187 L Sbjct: 170 KEPTL 174 >UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K928_THASP Length = 502 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 56/178 (31%), Gaps = 17/178 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 L VD+ETTG E+G++ VD + + + + G + Sbjct: 12 LAFVDIETTGGPAQRESITEIGIVQVDEDGVREWSTLVRPA--SRIPETIQRLTGIDDDM 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + EV D L G F N FD + + P Sbjct: 70 VADA----PRFEDIADEVFDRLDGRLFVAHNARFDHGHLRAAFRRAGLDMRPQV------ 119 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + GLD + ER G+ V +RH A+GDA + + Sbjct: 120 -----LCTVKLSRRLFPDHRRHGLDHLIERHGLAVADRHRALGDARLLWQFWQKIHER 172 >UniRef50_A6CHW6 DNA polymerase III, alpha subunit n=1 Tax=Bacillus sp. SG-1 RepID=A6CHW6_9BACI Length = 245 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 17/179 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYY 61 + DLETTG + V +G + + + L + L + G Sbjct: 62 TFTIFDLETTGFFPEIGDEIVSIGAIKMQGNKILDQKTFYEVINPLQNVSLETKRFTGLR 121 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + V + ++ +G +FD + ++ + +P Sbjct: 122 RT----DFIKAKTLPVGLKDFLEFCKGTILVAHPASFDINFLQKRIRKWDLPSFEPEY-- 175 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +YA K ++ + LD + ++ + RH A+ DA TA F L Sbjct: 176 --------IDSYALAKELLNEQKCY-LDDLVKKFQISEKTRHHALNDAIMTAEVFQELL 225 >UniRef50_B4RBF9 DNA polymerase III epsilon chain n=3 Tax=Alphaproteobacteria RepID=B4RBF9_PHEZH Length = 234 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 67/190 (35%), Gaps = 16/190 (8%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG D VE+ L ++ H ++ +A +++G Sbjct: 1 MARE-IVLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDPCRDMPAEAEKVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E D++ N AFD V + S Sbjct: 60 LSTAFLRGKPKFEAP--EIVEAFLDFVADAPIVAHNAAFDRAFVNYELGLCSR------- 110 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + HR D A A + P LDA+ +R + + R H A+ D A + Sbjct: 111 AELPDHRWIDTLALAKQRF---PGMHNSLDALCKRFKISLAEREKHGALIDTKLLAAVYL 167 Query: 178 MLRHTAAAHL 187 LR L Sbjct: 168 ELRGGRERRL 177 >UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinobacter RepID=A3JBF5_9ALTE Length = 483 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 54/177 (30%), Gaps = 16/177 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +DLETTG T E+G+ GE + V P ++ G Sbjct: 10 TTTFAFLDLETTGGSVATDRITEIGIQFWRAGECV-GQWQTLVNPKTRISPFIEQLTGIS 68 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E++ L G F N FD V + F Sbjct: 69 NAMVADA----PLFEDIADELEQRLDGVVFVAHNARFDYGFVKGEFRRLGRMFVAKV--- 121 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + +DA+ ER G+ V RH A+GD AA F+ Sbjct: 122 --------LCTVKLSRRLYPEFRRHNMDALIERHGLQQVQRHRAMGDVAAMLGFFEH 170 >UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=10 Tax=Clostridium RepID=A5I1F6_CLOBH Length = 855 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 59/180 (32%), Gaps = 13/180 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + ++V D+E+TG++ V++ + + + + ++G+ Sbjct: 492 NENVVVFDVESTGINTTEDEIVQIAGIKI-NNKGEVIESFQRFLTPKKFVGDSYLVHGFS 550 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L + V + ++++ G N AFD +I+ + S+ + Sbjct: 551 DQFLKENGENK---KVVLKDFLEFIKDTVIVGHNVAFDISILNSELERLSLEKASFKTY- 606 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L+ +++ + H A+ D AT + Sbjct: 607 --------YDTLDIARRFYPNLTNHKLETLSKLFNTETKSSHDAMDDILATKDVLMAMLK 658 >UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Flavobacteriaceae RepID=A0M4R6_GRAFK Length = 507 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 18/176 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 + + D+ETTG E+ ++ V G+ + + ++ + A P +E + G + Sbjct: 5 KFAITDIETTGNGIKGNRITEICVIVVQNGKVID--EYSSLVNPSQAIPLYIETLTGIND 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 ++ Q + E+ + F N FD I+ + + F Sbjct: 63 EMVFNA----PQFSEIADEITKITKDCIFVAHNVNFDYNIIRAEFASLDRDFKRK----- 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L K I L + + +P ++RH A GD AT F Sbjct: 114 ------RLCTVRLTKKLIPGLFSYSLGNICTSINIPHIDRHRAKGDCDATVTLFQR 163 >UniRef50_Q1NJL0 DNA polymerase III, epsilon subunit n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJL0_9DELT Length = 238 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 55/180 (30%), Gaps = 6/180 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 +V D E TGLD V +G + ++ + + + A P + I+ Sbjct: 39 DFVVFDTELTGLDRRRDEIVSIGAVRINNLRIMVGDTFYVQVKPSQALPKDSTLIHRLTP 98 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMPFSPLTVGR 121 L A D+ + G D V R + Y S + Sbjct: 99 HQLSDA----PPLATVLPGFIDYCGQSLLVGHFVGLDVAFVNRACLRYYGARLSNPCLDT 154 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + L A+ + G+P H+A DA TA+ F L Sbjct: 155 MHLAQTHTEMQWQQYHDRFRMDISYNLAALGAKYGLPAFTHHNAYEDALQTAYLFIYLVK 214 >UniRef50_UPI0001B583F7 DNA polymerase III n=2 Tax=Streptomyces RepID=UPI0001B583F7 Length = 612 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VD+ET+GL + V ++ + V+ P ++++G Sbjct: 19 DWALVDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPGCDPGP--VDVHGLTRE 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L G + L+ N FD +A + R++ Sbjct: 77 RLSGA----PAFGQIAGRLGAMLQDRVLVAHNAQFDYDFLAHEFARA----------RLY 122 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L A + PT L ++A GVP H A+ D A F Sbjct: 123 LPVTRRLCTLALNRQVDPPTRDMKLGSLAAHYGVPRTRAHDALDDTRVLAGIFLRATLRE 182 Query: 184 AAHL 187 AA L Sbjct: 183 AARL 186 >UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=53 Tax=Staphylococcus RepID=DING_STAAB Length = 897 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 15/174 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG D +++G+ V + + H + P + E Sbjct: 5 TYAVVDLETTGNQLDFDDIIQIGITFVRNIQIID-TYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + D ++ F N FD + + ++ + P V Sbjct: 64 MLQQA----PYFNQVAQGIYDNMKDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKRV---- 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + K+ + L +AE G+ + N H A DAA TA Sbjct: 116 ------IDTLEIFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLMI 163 >UniRef50_D2BQ89 DNA polymerase III, epsilon chain n=4 Tax=Lactococcus lactis RepID=D2BQ89_LACLK Length = 277 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 65/183 (35%), Gaps = 15/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNV-DTGESLYFVPHITVEQLAAADPKAMEING 59 M+++ +V D ETTG +++G + + + + Q + + ++ G Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + E D+++G+ N FD + + + + + Sbjct: 61 IKP----ADLLNQPTIEEILPEFLDFIKGHLLVAHNAPFDISFLYQAIIDC-------AI 109 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 V R+ D A + L + LE + E + H A+ D TA + L Sbjct: 110 TDVEAFRVYDTLAESKKLLTMSSYALENFKDLLEMNDL---RSHDALNDCLITAKLYQYL 166 Query: 180 RHT 182 + Sbjct: 167 QKI 169 >UniRef50_D1WX09 DNA polymerase III, epsilon subunit n=17 Tax=Streptomyces RepID=D1WX09_9ACTO Length = 341 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 57/180 (31%), Gaps = 17/180 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL + + +D ++ + V P + I+G Sbjct: 19 YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPERDPGP--VWIHGLTSDV 75 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E+ L N AFD +++AR+ V Sbjct: 76 LEGA----PLFPEVAEELSARLADRVLVAHNAAFDWSMIAREYARA----------SVVA 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L A K P L ++A GV H A+ DA A F H AA Sbjct: 122 PVEQRLCTIALAKELRLPLPNHKLASLAAHFGVVQQRAHHALDDARVLAEAFRPSLHAAA 181 >UniRef50_D0L0M1 DNA polymerase III, epsilon subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0M1_HALNC Length = 481 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 16/185 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + L +D+ETTG + E+G++ + + A + + G Sbjct: 19 QPLACLDIETTGSHTERDRITEIGIVTLHPDG-TQSNWSCLIHPGCAIPARITTLTGITN 77 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + + L + N FD + + + F+P Sbjct: 78 EMVAD----QPVFAHRAQALLERLENHIVIAHNARFDLGFLKQAFRREGIRFNPSV---- 129 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + LD+V +R+G+ RH A+GDAA A L T Sbjct: 130 -------LCSVKLSRQMFPAERRHNLDSVMQRMGLSCAARHRALGDAAVVADFITTLACT 182 Query: 183 AAAHL 187 A L Sbjct: 183 RAEEL 187 >UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUD4_XYLCX Length = 547 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 59/174 (33%), Gaps = 16/174 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL +EV +L +DT + A I+G + Sbjct: 49 FAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWSTRLNPQRTV--GATWIHGITDAD 106 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A +V L G F G N FD+ V + T+ Sbjct: 107 VAHA----PSFADVAAQVAQRLTGAVFVGHNARFDAGFVLAELTRAGWDAPEPTIW---- 158 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 AA + L VA G+ + + HSA+GDA ATA Sbjct: 159 ------CTQAASHHWLPDASSRRLVDVAAAAGISLTHAHSALGDARATAAMLTR 206 >UniRef50_A6Q1S7 DNA polymerase III, epsilon subunit n=2 Tax=Epsilonproteobacteria RepID=A6Q1S7_NITSB Length = 276 Score = 145 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 19/179 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 ++ +VVD+ET G + + +E+G + + F I E ++ G Sbjct: 66 QEQEFVVVDIETNGSKPEFSQVIEIGAIKFKGNTIIDRFESFIYAE---DVPEYISKLTG 122 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L +++L+ F N FD ++ + + Sbjct: 123 ILQEDLENA----PSQKEVLLSFKEFLQDAVFVAHNVRFDYNFISSKLEQLGLE------ 172 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 ++ + +L + +E GL+ + E LG+ H A DA M Sbjct: 173 -KLANRKLCSIDL----ARKTIESERYGLEFLNETLGINTAVSHRAYADALTAYKILQM 226 >UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQL3_9ACTO Length = 589 Score = 145 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 54/184 (29%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVDLETTG E+G + V GE++ V + G Sbjct: 43 TFVVVDLETTGAKPGPESITEIGAVKVRGGETV-GEFSTLVNPGQPIPAFITSLTGITTA 101 Query: 64 GLYREALTEQQTAVAWGEVQDWL---RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R + A + ++L A N FD + + + Sbjct: 102 MTARA----PRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTWPSV--- 154 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+ D A A + D L +A G H A+ DA AT + Sbjct: 155 -----RVLDTVALARRAFSSDEVPNFKLSTLAGACGATTAPNHRALDDARATVDVLHAML 209 Query: 181 HTAA 184 Sbjct: 210 GRLG 213 >UniRef50_D2RB05 CRISPR-associated endoribonuclease Cas2 n=2 Tax=Gardnerella vaginalis RepID=D2RB05_GARVA Length = 359 Score = 145 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 17/189 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV--------EQLAAADPKA 54 K +V+D ETTGL+ +E+G + G+ F I + + + Sbjct: 176 KNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKIEEFQKLININCDSVSNFNKNNFIPNEI 235 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 +E+ G L + + +A E +++ G N FD + + + F Sbjct: 236 IELTGITSNMLESYGV---RLDLALKEFINFVERLPVLGYNVQFDMSFLNSALSSLDERF 292 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + +++ D++ + K + L V + H A+ DA TA Sbjct: 293 DH----SLSINKIFDISRFV--KKEKKFLKNYQLKTVLHEYNIAESVPHRALLDARLTAH 346 Query: 175 CFDMLRHTA 183 L Sbjct: 347 LVFNLTELL 355 >UniRef50_C6WZM7 DNA polymerase III epsilon subunit n=2 Tax=Flavobacteriaceae RepID=C6WZM7_FLAB3 Length = 407 Score = 145 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D+E+ G + +E+ + D E + + V + P ++ + Sbjct: 2 YSVIDIESNGAGFRKESIIEIAVYKYDGHEIVDQFISL-VNPESEITPFVQKLTKISPKM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + T + V + R G N FD ++ ++ F+ Sbjct: 61 V----KTAPKFPEIARRVIEITRNTILVGHNIDFDYRMLRQEFKRLGYDFT--------- 107 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L K I E L + + LG+P+V++H A GDA AT F +L Sbjct: 108 --INTLDTIPLAKKLIPEAESYSLGKLVKSLGIPLVDQHRASGDARATLDLFKLLL 161 >UniRef50_A6QC85 DNA polymerase III, epsilon subunit n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QC85_SULNB Length = 272 Score = 145 bits (368), Expect = 6e-34, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 17/178 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 ++ V+D+ET G T+ +E+G + V+ GE + T + A +I G Sbjct: 70 QEQRYCVIDIETNGSKPGTSQVIEIGAVMVEKGEIVD--RLETFVECAFLPEYITKITGI 127 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A +++ ++ F N FD + + + + G Sbjct: 128 EPIDLKDA----PTRRAALTQLRQFMGDAVFVAHNANFDYSFLTASFERFGL-------G 176 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + +L + +E GL + + LG+ H A DA + Sbjct: 177 GIGNPKLCTIDLAKRT----FESERYGLAYLIDFLGIETATHHRAYSDALCAEKVMEK 230 >UniRef50_Q2SSE0 DNA polymerase III, alpha subunit, Gram-positive type n=4 Tax=Mollicutes RepID=Q2SSE0_MYCCT Length = 1479 Score = 145 bits (368), Expect = 6e-34, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ DLETTGL + +E G + + I ++ + ++ E Sbjct: 431 KMVFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKSKLKDFTKKLTNINEE 490 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + VA+ E+ ++ N FD T ++ G++ Sbjct: 491 MLENK----PGIEVAFKEINQVIKDAILVAHNANFDYTFLSHWSEKLGY-------GKLE 539 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLR 180 + + ++ + L ++A+R+ + H DA A ++ + Sbjct: 540 NTIIDT---LTISRIIYPELKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERML 595 >UniRef50_Q67M39 DNA polymerase III-like protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67M39_SYMTH Length = 390 Score = 145 bits (367), Expect = 6e-34, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 71/188 (37%), Gaps = 15/188 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M L+V+D ETTGL+YD +++G++ + + AM++N Sbjct: 20 MRYNLVVIDTETTGLEYDQHRIIQIGVVAIKEQRIVKTWESKLRLIDGEVSAYAMQVNRL 79 Query: 61 YERGLYREALTEQQTAVAWGEVQ-DWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + E + ++Q ++LR G N +FD + + + +P Sbjct: 80 DPSDMRSEKYPHPKA--VLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFARHGLPQ---- 133 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 W D + A G+ + L+++A V + H A+ DA ATA Sbjct: 134 ----WQGNFVD--SMALGRALLPDL-SASLESLARHFRVELTQHHDALADAVATAHVLLH 186 Query: 179 LRHTAAAH 186 L A Sbjct: 187 LLDLAQQR 194 >UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus RepID=A4VTT3_STRSY Length = 837 Score = 145 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 17/180 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + VVDLE TG D A +++G++ V+ GE + + D + G Sbjct: 25 SNRYAVVDLEATGTGTD-AKIIQIGIVLVENGEIIDSYA-TDINPYELLDDHIKNLTGIT 82 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L + + D + F N FD+ ++A Sbjct: 83 DQQLSQA----PDFGQVASTIYDMIGDAIFVAHNVKFDANLLAEALFFEGY--------E 130 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + R+ + +L E L +AE L + + H+AI DA ATA ++ Sbjct: 131 LLTPRVDTVE---LSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLLIKIQE 187 >UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synergistaceae RepID=C9M9P8_9BACT Length = 208 Score = 145 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 15/177 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D+ETTGL + +EVG L G+ ++ I+G + Sbjct: 12 YVALDIETTGLSPRSCSIIEVGALKFVPGKKGE-EFSSLIDPGCPIPASGRSIHGITDDM 70 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + + D++ N FD + +A + +TV Sbjct: 71 VAG----QPRVEEVIAGLLDFVGPAPLVLHNAPFDLSFIAPVLDKLGRKWQAMTVF---- 122 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++ L+++++ H A+ D T F Sbjct: 123 ------DTLPLSRVAFPGLRSYSLESLSDFFEFKEGVHHRALCDCWYTQQLFTRFLE 173 >UniRef50_C5VCF0 Exonuclease family protein n=2 Tax=Corynebacterium matruchotii RepID=C5VCF0_9CORY Length = 2479 Score = 145 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 58/175 (33%), Gaps = 16/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVD+ETTG VE+ ++ +D + + + A I+G Sbjct: 2084 TYAVVDVETTGFSTA-DRIVELAIVVLDDDGENLYEWSTLINPMRDISNGA--IHGIT-- 2138 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 ++ +V L G F N FD ++ + + + L G + Sbjct: 2139 --AKDVAVAPTFDQVADDVAALLEGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHI- 2195 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 D A L P LD+ +G+ HSA+ DA AT Sbjct: 2196 -----DTLRLAQNSL---PISSRSLDSCLAFMGITNEQAHSALSDARATGRLLTR 2242 >UniRef50_C4GLS9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLS9_9NEIS Length = 464 Score = 145 bits (367), Expect = 8e-34, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++++DLETTG + E+ L+ G+ + + ++ G + Sbjct: 23 PVVILDLETTGGHFYADRITELAFLHFWQGKITAVQQLVQPNMPIS--GFVRDLTGISDE 80 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A +V LRG+ N FD T + + F+ Sbjct: 81 MLQG----QPTFAQFAPQVLPLLRGSLLIAHNSRFDYTFLRHECRRNGFAFATAG----- 131 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + LD++ ER G+ V +RH A+ D A A + Sbjct: 132 ------LCSVQLSRKLYPEFFKHNLDSIIERHGLAVASRHRAMSDVLAVAEYLQLALREK 185 Query: 184 AAHL 187 A L Sbjct: 186 GAPL 189 >UniRef50_A5CE47 DNA polymerase III epsilon chain n=2 Tax=Orientia tsutsugamushi RepID=A5CE47_ORITB Length = 222 Score = 145 bits (366), Expect = 8e-34, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 18/189 (9%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTG-ESLYFVPHITVEQLAAADPKAMEINGY 60 ++ IV+D ET+GLD+ +E+G + +D+ + H + +A +++G Sbjct: 2 QRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDISKEAYKVHGL 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + E ++ N FD + + + Sbjct: 62 SRDFLSDK----PKFREIVDEFLQFIDRAQLIMHNANFDMQFLNSELFR-------IRKS 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + + D A + P E LDA+ + + +R H A+ DA A + Sbjct: 111 AIPNTCVIDTLTLARKRF---PKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGR 167 Query: 179 LRHTAAAHL 187 + H L Sbjct: 168 MMHGMQVVL 176 >UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTS6_BACTU Length = 286 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 18/183 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ETT E+G + G+ + + + ++ G Sbjct: 19 FVVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDKYSQL-INPEMKIPANITKLTGITND 77 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDS-TIVARQRVTYSMPFSPLTVGRV 122 + + Q ++ G N FD + + Sbjct: 78 MVQGK----PVYGQVLPVFQQFIDGFLVVAHNAKFDWNRFLLFYFEKVGI---------- 123 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 H + L + A + LD G NRH A DA AT +C L+ Sbjct: 124 -HPKNEVLDSVAVFQHFCPNKGKYKLDDFCTTFGYLNKNRHRAYEDAEATGYCLLELKRR 182 Query: 183 AAA 185 A+ Sbjct: 183 FAS 185 >UniRef50_A8ES54 DNA polymerase III, epsilon subunit n=4 Tax=Epsilonproteobacteria RepID=A8ES54_ARCB4 Length = 203 Score = 144 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 75/183 (40%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 + + +D ETTGL+ + +G + + + L I ++ + ++++++ + Sbjct: 30 EYVSLDCETTGLNPKKDEILSIGAVLIKDNKILMRKTFNIFLKPSKDINIESIKVHHLRQ 89 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 L E + ++ D++ G FD I+++ Y +P +P+ V Sbjct: 90 IDLNDAL--EPEIG--IYQLLDFIGSRPIVGYYIEFDMAIISKYTKKYLGIKLPNTPIEV 145 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +++ + Y L D + + L +PV+ +H A+ DA T+ F L Sbjct: 146 SSIYYDSRKSTSNYGFIDL--------KFDTIMKNLNIPVLGKHDALNDAIMTSMIFLKL 197 Query: 180 RHT 182 + Sbjct: 198 KQF 200 >UniRef50_A7HHL1 Exonuclease RNase T and DNA polymerase III n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HHL1_ANADF Length = 238 Score = 144 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 17/191 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAA--DPKAMEING 59 V+D E TGLD + +G + + G + V + A + + I+G Sbjct: 44 TMTFTVLDCEMTGLDPARDEILSIGAVRIRNGRIVMAERFYQVFKPTEAVSPKEVILIHG 103 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + R A + ++ + G + D + + Sbjct: 104 LGPDEVSRGL----PLGDALERLLAFIGDSVVIGHFTSVDLSFLNAALA-------SRKE 152 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + L YA + P L+ + +G+P H A DA T Sbjct: 153 RSLKNPALDTRLLYAWWRRRTSPAGQAAADANLEDIVIEMGLPRYPAHHAFYDALTTGMV 212 Query: 176 FDMLRHTAAAH 186 F L A Sbjct: 213 FLKLLGDFEAS 223 >UniRef50_B3RU88 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RU88_TRIAD Length = 289 Score = 144 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 18/184 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ETTGL +E+G L + + + +A E++ + Sbjct: 16 VVLDTETTGLSVRTGHRIIEIGCLELIDHQPTSRTFQCYINPKFPVSERAFEVHHLSNKF 75 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + +D+++ +T N FD + + ++P + Sbjct: 76 LEG----FPTFDGIVQDFRDFIQEDTLIIHNGHFDIKFINNEFQKLNIP-------EISF 124 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR---HSAIGDAAATAFCFDMLRH 181 R+ D A + P + LD++ +R + +R H A+ D + L Sbjct: 125 ERVIDTMLMA---RKLYPRQPASLDSLCDRFNIDKSSRSLGHGALTDVKLLQLVYAKLLK 181 Query: 182 TAAA 185 A Sbjct: 182 DQDA 185 >UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidobacterium longum RepID=B3DQ35_BIFLD Length = 235 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 55/193 (28%), Gaps = 28/193 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +DLETTG ++ E+G + V G + + V L + + G + Sbjct: 33 DYVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQL-VNPLRPIPRQITTLTGITDA 91 Query: 64 GLYREALTEQQTAVAWGEVQDWLRG-------NTFAGSNPAFDSTIVA---RQRVTYSMP 113 + WL G N +FD + R Sbjct: 92 MVAD----LDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFA 147 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 AD + L + R G+ H A+ DA T Sbjct: 148 -------------CADYDTMQISRALFPAQRHHRLADLIVRFGIADNEEHRALSDAIQTQ 194 Query: 174 FCFDMLRHTAAAH 186 CF+ +RH H Sbjct: 195 QCFEWMRHYVTEH 207 >UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) n=2 Tax=Rhodocyclaceae RepID=Q5P3L6_AZOSE Length = 469 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 19/177 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 L+++D+ETTG + + E+ +L ++ GE + + + E+ A + G + Sbjct: 7 LVLIDVETTGANPVSDRVTEIAVLRIERGEIVGRWESLVNPERPIPAL--IQRLVGITDE 64 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A V+ L G F N FD + + F Sbjct: 65 MVAGA----PTFAELADSVRGHLDGAVFVAHNARFDYGFIRNEFSRLGQQFEASV----- 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + GLDA+ ER G RH A+GD F L Sbjct: 116 ------LCTVKLSRALYPEHHRHGLDALIERHGFTCGARHRAMGDTDVLWQ-FARLV 165 >UniRef50_C5EZ00 DNA polymerase III subunit epsilon n=2 Tax=Helicobacter RepID=C5EZ00_9HELI Length = 247 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 51/177 (28%), Gaps = 19/177 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGY 60 ++ +VD+ET G + P+E+G + G F + E+ +I Sbjct: 68 EQKFCIVDIETNGHNPFLHQPIEIGAILYQNGMVQKEFQSFVFCEE---IPEYITKITNI 124 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + +L F N FD ++ Y G Sbjct: 125 TTEMLRNA----PPIHQVLESFRIFLGDCVFVAHNVGFDYGFLSNSLHHYGF-------G 173 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 +++ L + L+ + L + H A+ DA F Sbjct: 174 YLYNPSLCTIKLAQKT----FQAPRYSLEFLNGFLNINHSPLHRALEDAKVALEVFK 226 >UniRef50_D2PY06 Exonuclease RNase T and DNA polymerase III n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PY06_9ACTO Length = 415 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 55/173 (31%), Gaps = 16/173 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+D ETTGL +E+ ++ +D + P+ I+G Sbjct: 2 YAVIDTETTGLLPGHRHRVIEIAVVLLDQHGRFEHEWVTLLNPQRDLGPQ--HIHGI--- 56 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + L + + L G G N FD + + V + Sbjct: 57 -LTADVLAAPEFVDVARHLGALLAGRMVVGHNVEFDLGFLRAEFARLGH------VVPLI 109 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 R A A + P L A G+ + HSA+ D ATA F Sbjct: 110 TERSMCTMALAGY---LYPGSKRTLGACCAAAGISLQGWHSALADTRATAELF 159 >UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2F3_PELTS Length = 937 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 19/164 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K+++V DLETTGLD + +E+GL+ + + + H V K + G Sbjct: 1 MIKEIVVCDLETTGLDPLSDRIIEIGLVRLKDLKIVDIY-HTMVNPGRPLPLKIKNLTGL 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + +V ++ AG N FD +A S Sbjct: 60 DDSDLA----SAPAFSGVREKVLGFIGDAPIAGHNIRFDMGFLAAA-GGISFKNPAYDTV 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + +L + L+++ ERL V RH Sbjct: 115 EL-------------ARLAVPGLPTYRLESLCERLNVEAAARHR 145 >UniRef50_C6RD51 Mature parasite-infected erythrocyte surface antigen n=2 Tax=Campylobacter RepID=C6RD51_9PROT Length = 311 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 24/186 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAM-EINGY 60 + VVD+ET+G ++ +E+G L + GE + F + A P+ + E+ G Sbjct: 71 QIFCVVDIETSGG-INSGQIIEIGALKLQNGEIIGKFETFVY----APYVPENISELTGI 125 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A + + +L + F N FD ++ G Sbjct: 126 TAEHLKNA----PSLAFVMEQFKVFLGQSVFVAHNVRFDYGFISATLEALGY-------G 174 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-L 179 + + +L + + GL + E LG+ H A+ DA A A F L Sbjct: 175 ELLNRKLCTIDL----ARRTIASPKYGLGTLKEILGIDNT-HHRALSDAIAAAEIFKYSL 229 Query: 180 RHTAAA 185 + + Sbjct: 230 QKLPSE 235 >UniRef50_B9L0P4 DNA polymerase III epsilon subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0P4_THERP Length = 228 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 56/184 (30%), Gaps = 12/184 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAAD-PKAMEINGYYER 63 V+D E TGLD + + +G + + L + + +++ ++G Sbjct: 33 YTVLDAEMTGLDPERDELLALGAVRMVGTRLLLGASFYQLIRPQRQGWGQSVTVHGIRP- 91 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP---LTVG 120 + + E + + G D + R + + + G Sbjct: 92 ---VDVVGAPPLEQVLPEFVRFCASSILVGHGVEIDRKFLQRAAARCGLSWPRTYWVDTG 148 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-L 179 RV + A + L+ + + RH A+ DA TA + L Sbjct: 149 RVARWLTSHHGALPEAAADR---GRFSLEDLLAAYEIEPPARHHALADAFVTALVWQRQL 205 Query: 180 RHTA 183 A Sbjct: 206 TELA 209 >UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 family protein n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BET5_9FIRM Length = 295 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 56/181 (30%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K I++DLETTGLD +E+G + + G+ + Q K I G Sbjct: 126 TKAYIIIDLETTGLDPINDRIIEIGAIKI--GKE-NKEYSSIIWQDIKLSEKISNITGIS 182 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + A E D++ +T G N FD + P Sbjct: 183 DEDIKKGK----DEKNAINEFIDFIGEDTLVGYNINFDIKFINESLKRQEKPKIKNMTYD 238 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 V + D + L+ V + G+ H A+ D L Sbjct: 239 VMQYVKNDKLFL----------KNYKLETVIKEYGINKNVPHRALEDVKIIQKLIAKLNK 288 Query: 182 T 182 Sbjct: 289 L 289 >UniRef50_C3XF27 DNA polymerase III subunit epsilon n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XF27_9HELI Length = 268 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 17/178 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L VD+ETT +E+G + GE L + +++ G Sbjct: 79 KLCFVDIETTSASVKNGQIIEIGAIIAQNGEILDTFDTLVYSPFVP--EDIIDLTGIDSY 136 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + +L + F N +FD +A Y MP ++ Sbjct: 137 MLEDA----PRLEQVLKQFRAFLGDSVFVAHNVSFDYNFIAESLHEYDMP-------PLF 185 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + RL L + ++ L + + LG+ H A DA +++ Sbjct: 186 NPRLCTLDLSRRTIV----SKKYALAYLNDMLGINTAQAHRAYADALTAFRLYEICMQ 239 >UniRef50_D1NTJ1 DNA polymerase III PolC-type n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NTJ1_9BIFI Length = 214 Score = 143 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 18/199 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M I +D+ETTGL E+G + V G + + + + G Sbjct: 14 MPLDYISLDIETTGLAPRQETITEIGAVRVRDGRIADRFS-MLINPGKHIPSRITALTGI 72 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A DW+ G+ G N FD + + ++ + + Sbjct: 73 SDAMVEDA----PMIDEAIPAFVDWVDGDRLIGHNIRFDLSFLLKEAMLLDAALATPFNA 128 Query: 121 RVWHHRLADLAAYAAGKLNID-------------PTELEGLDAVAERLGVPVVNRHSAIG 167 + + A + P+E L + R GV H A+ Sbjct: 129 KAVNPAAMTTTAEITRAMLGPDPLDTMMIDRWLFPSERHRLSDLIVRYGVADTEAHRALS 188 Query: 168 DAAATAFCFDMLRHTAAAH 186 DA T CF+ R AA Sbjct: 189 DATQTYQCFEWQRRYVAAS 207 >UniRef50_A8ET44 DNA polymerase III n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ET44_ARCB4 Length = 272 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 18/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + VD+ET G +E+G + GE L ++ P E+ Sbjct: 80 EQTFCFVDIETNGGTPKKGFQIIELGAVKYKNGEVLDS--FNSLVFAKEIPPYIQEVTKI 137 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L T + + +++L + F + FD ++ YS+ G Sbjct: 138 TPAMLE----TAPRIEKVLKDFKEFLGDDVFIAHDIKFDYNFISDSFEKYSL-------G 186 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ + +L + +E GL ++ E L + + N H A DA T F+ Sbjct: 187 KLLNRKLCTIDLAKRT----IKSEKYGLSSLKELLNIDIENHHRAYYDALTTQIVFEKCL 242 Query: 181 H 181 Sbjct: 243 K 243 >UniRef50_C8X5R2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5R2_DESRD Length = 233 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 6/178 (3%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D E TGL + +G + ++ T A I+ + Sbjct: 36 FCVLDTELTGLR-RRHEIISIGAVRIEHLALKPLDRFYTEVCPKAWTKTGTLIHRISPQQ 94 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTVGRVW 123 + E+ +L + G N A D + + + P + + Sbjct: 95 CQDA----PKIGKVLPELIAYLGTSLLIGHNIALDLQFLQKACKKHLGHPLVHPCIDTLR 150 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 R+ + + + + L +A+ G+P H+A DA TA+ F L H Sbjct: 151 LARVYEESRWESYYDRFTLRVSYQLQELAQAYGLPCFPAHNAASDALQTAYLFVYLVH 208 >UniRef50_Q7VGH4 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7VGH4_HELHP Length = 266 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 19/175 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 L+ VD+ET G +E+G L V GE + F ++ ++ ++ G + Sbjct: 73 LVFVDIETNGAKPQQCQIIEIGALKVKGGEIIDKFESYVYADE---VPENITQLTGICQA 129 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + GE + +L + F N FD V + + Sbjct: 130 DIAYA----PSIKEVLGEFRAFLGTDVFVAHNVNFDYGFVDYHLRQCGL-------FGLL 178 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + +L + L + L + E LG+ H A DA + F++ Sbjct: 179 NPKLCTIELAKKTIL----SPRYALGFLNEFLGIRTAVTHRAYADALTSFRVFEI 229 >UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive type) n=5 Tax=Leuconostocaceae RepID=Q04F80_OENOB Length = 1437 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + D+ETTGL +++ + + G L + + + + G + Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKMKNGVVLDTFDQF-INPGFPLSEQTINLTGITDDL 468 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A Q + AG N FD V + +P V Sbjct: 469 VKNSK----PEAEVLKMFQQFYARTILAGHNVIKFDYGFVNHALAVHKLPKINTLV---- 520 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + + LD ++++ V + + H AI D+ AT + A Sbjct: 521 ------IDTLNLARWLYPNFGRYTLDFLSKKFSVNLEHHHRAIDDSTATGMLLHIFLKEA 574 Query: 184 AAH 186 + Sbjct: 575 EEN 577 >UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2 Tax=Desulfitobacterium hafniense RepID=B8FZZ1_DESHD Length = 929 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 22/177 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 +++V+D+ETTG D +E L ++ GE + P+ + + G Sbjct: 5 KIVVIDIETTGFDIYNDEIIEFAALCIEEGE--EAEAFSVLISPRRQVPERILRLTGISP 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + ++ D + G N FD + + Sbjct: 63 EELKQAG----SLQAYRDKILDLFQDAIIVGHNVEFDLGFLEQAL-----------TIHF 107 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDM 178 + L ++ L + + LG+ P+ H A+ DA A Sbjct: 108 ENTLWDTLE---IARILYPNMPKYKLGDLTKSLGLTPLEKAHRALFDARAAWELLQA 161 >UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXK4_MYCAP Length = 1459 Score = 143 bits (361), Expect = 4e-33, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 16/186 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + D+ETTGL +E G ++++ + V ++ A E+ G ++ Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQAKIGAFTTELTGITQQM 484 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E L+ + D L G N FD + Q ++PF +TV Sbjct: 485 LDSEGLS---IKDGLQRIYDCLDGKVAIAHNAKFDFNFLKEQFRLNNVPFPNVTV----- 536 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFD-MLRH 181 + A ++ + L+ V RLGV H DA A + ++ Sbjct: 537 -----IDTLIASRIGFPNYKRHKLEDVTSRLGVVYDPNVAHRGDYDAKVLANVWVNIISE 591 Query: 182 TAAAHL 187 + ++ Sbjct: 592 LNSKNI 597 >UniRef50_B8R965 Putative DNA polymerase III epsilon subunit (Fragment) n=1 Tax=uncultured bacterium 1114 RepID=B8R965_9BACT Length = 312 Score = 142 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 16/178 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYE 62 + +D ETTGLD V +G + + T+ + + A I+G + Sbjct: 27 PVTALDTETTGLDPGRDRIVAIGAVRLHGRRLYPSRTFETLVRPGISIPASASAIHGIGD 86 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A W + WL G G + FD ++ + ++ Sbjct: 87 AMVAGA----PGMAEIWPRLSPWLAGRVVLGHHVDFDLAMIGAAARRHGFSWTE------ 136 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D A A +D + LD A+R GV + RHSA+GD+ A + L Sbjct: 137 --PFALDTARLVAA---LDGSSPVDLDEAAQRHGVTLEGRHSALGDSLIAARVYLRLV 189 >UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WPW0_EGGLE Length = 966 Score = 142 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 18/181 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++V+D ETTG ++ ++ ++ GE + + V + ++R Sbjct: 10 VVVLDTETTGFSFNHDELTQIAAARMEQGEIVEWFITF-VNPGKPIPEDVAHLTDIHDRD 68 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + L A A ++ +++ N FD T R Y + + Sbjct: 69 VADAPLP----ADALAKLVEFIGDAKVVAHNAEFDRTFTTRHPSGYPLLENTW------- 117 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + + ++ + + L + G P+ H A D AT F +L A Sbjct: 118 -----IDSLDLARIALPRMKSHRLLDLVRAFGAPLST-HRADADVEATCAIFRILLAGVA 171 Query: 185 A 185 A Sbjct: 172 A 172 >UniRef50_Q2B6U9 Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6U9_9BACI Length = 243 Score = 142 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 16/173 (9%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYYER 63 IV+D+ETTG D + +G + ++ G ++ + P+ ++ G Sbjct: 60 IVMDIETTGFFPDQGDEIISIGAVKIENGTINEDKKFYSLIRYEKTLSPQIEQLTGLRGS 119 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E + T + + + + + + Sbjct: 120 QLKEA----PPLPEVLIEFFKFCEARTIIAHHARHEKSFLQNASWKHF-------KAPLK 168 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 H + Y ++ L+ L+ + G+PV+ RH A+ DA A + Sbjct: 169 HRIIDTSFLY---RIAEPELNLQRLEDLCSHNGIPVMERHHALEDARLAAELW 218 >UniRef50_B2A7J4 DNA polymerase III, epsilon subunit n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7J4_NATTJ Length = 864 Score = 142 bits (360), Expect = 5e-33, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 15/178 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L+V D+ETTGLD +E+ L G+ + + ++ +++G ++ Sbjct: 499 KLVVFDVETTGLDTTKDEIIELAALK--AGKDGVVDEFHEYLRNSKPVGESFQVHGISDQ 556 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + +++ +++ G N +D T+V Q L + Sbjct: 557 VLLEQGKPPEKS---LASFTNFIDDCDLVGHNVNYDITMVENQCK-------KLLNQDLE 606 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 H + + E L+++ E L + H A+ D AT +L Sbjct: 607 LHGYDTVD---ISRRYFPRLEKYNLESLCEDLQISSKPTHRAMDDVEATFELLQILLE 661 >UniRef50_A8LH88 Exonuclease RNase T and DNA polymerase III n=2 Tax=Actinomycetales RepID=A8LH88_FRASN Length = 389 Score = 142 bits (359), Expect = 6e-33, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 54/182 (29%), Gaps = 16/182 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + VVD+ETTGL + V ++ ++ ++ P + I+G Sbjct: 75 RPYAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTLLDPGCDPGP--VHIHGLTR 132 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A EV L G N AFD ++A + + Sbjct: 133 QRLAG----SPTFAAVADEVAGLLAGRVLVAHNAAFDWRMLAGEAMRIG----------T 178 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L L ++A GV H A DA A + Sbjct: 179 TIPVEWRLCTLTLASRLGLELPSLRLASLAAYWGVVQRRAHDAQDDAEVLAALLPRILQR 238 Query: 183 AA 184 AA Sbjct: 239 AA 240 >UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_LACRG Length = 933 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 52/183 (28%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVDLETTG ++ G V G+ + + + + + + G Sbjct: 6 TFAVVDLETTGTSVKDGDRMIQFGCALVRHGKIIQTISQM-INPDRSVPQTIQRLTGISP 64 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + L F N FD + + +P L Sbjct: 65 ERL----VAAPYFDEVAPALHQVLTKTVFVAHNVNFDYPFLNAEFERIGLPKLQLEA--- 117 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + ++ + L + + N H A DA +TA L+ Sbjct: 118 -------IDTVELAQVLLPEISSFRLSDLTTHFAIQHDNPHQADSDATSTAKLLLQLKAR 170 Query: 183 AAA 185 A Sbjct: 171 FQA 173 >UniRef50_A4X9Y0 DNA polymerase III, epsilon subunit n=6 Tax=Actinomycetales RepID=A4X9Y0_SALTO Length = 607 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 56/186 (30%), Gaps = 14/186 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A +VVDLETTG D E+G + V GE L + V P + G Sbjct: 51 ATTFVVVDLETTGGTPDGGGITEIGAVKVRGGEQLGVLA-TLVNPGTPVPPFVTVLTGIT 109 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L L ++L N +D + + + Sbjct: 110 QSML----LPAPPITEVLPSFLEFLPPDAVLVAHNAPYDVGFLKAACAAHGYRWPS---- 161 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+ D AA A L D L +A H A+ DA AT L Sbjct: 162 ----PRVLDTAALARRVLTRDEVPNRRLGTLAAYFRTATRPTHRALDDALATVDVLHGLI 217 Query: 181 HTAAAH 186 H Sbjct: 218 SRLGGH 223 >UniRef50_Q8EUK5 DNA polymerase III subunit alpha n=1 Tax=Mycoplasma penetrans RepID=Q8EUK5_MYCPE Length = 1458 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 51/181 (28%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D+ETTGL +E G + G + + + K I Sbjct: 420 TYVIFDIETTGLSPYYDKIIEFGAIKYHKGVQVESIQMF-INPEEKISDKIFAITKISNE 478 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A +++D++ + N FD + + M + Sbjct: 479 DVKDAL----KIKEALVKIKDFIGDSVLIAHNGIKFDLPFLNCKLEENKMDI-------I 527 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDMLR 180 + + + + L +A + + H A DA + + Sbjct: 528 KNPLIDT---LQISRAINEQIHGHSLGVIARKYKIDYDETQAHRADKDAEYLLNIWKRML 584 Query: 181 H 181 Sbjct: 585 E 585 >UniRef50_Q03C57 3'-5' exonuclease and CRISPR-associated protein cas2 n=3 Tax=Lactobacillus RepID=Q03C57_LACC3 Length = 301 Score = 142 bits (358), Expect = 8e-33, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYYE 62 + +D+ETTGLD + + +G + T+ P + ++ G Sbjct: 129 PFVALDIETTGLDAERDAIIAIGAVK--GPSVNETEKFTTLVNPRRPLPSTVAKLTGLSA 186 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L ++ + A ++D+ G N FD ++ + + Sbjct: 187 EELVANGIS---LSEAVQALRDFTGSLPLVGYNLRFDMGFLSAAGRETGLTSFGNQTFDL 243 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 K + + L V + H A+ DA AT D L Sbjct: 244 ----------LPLVKKSSRFLDNYKLSTVLAHYQIDNEQPHHALSDATATMALADKLIK 292 >UniRef50_A4ASW0 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4ASW0_9FLAO Length = 222 Score = 141 bits (357), Expect = 9e-33, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 11/177 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + IV D ETTGLD + +G ++V +G+ + +++EI+G Sbjct: 33 RFIVFDTETTGLDIVNDRILSIGAISVFSGKLDIGDSLEIYLKQKIFKAESVEIHGI--- 89 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ + A ++ + AFD ++ +P ++ Sbjct: 90 -LKEGSIEKHTEEEAIISFLKYIENGILVAHHAAFDIAMINAGLRRMGLP-------KLK 141 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L + L D ++ LD ++ +RH++ GDA T + Sbjct: 142 NKVLDTGVLFKKTTLCEDKNKIYSLDYLSGIFKFRNHDRHTSSGDAFLTGMILLKIL 198 >UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8GAH5_CHLAD Length = 233 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 8/179 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL---YFVPHITVEQLAAADPKAMEINGY 60 V+D+ETTGLD + +G +NV+ G L + I +++ ++ Sbjct: 37 PYTVIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHL 96 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A E+ + G D + + + Sbjct: 97 TPEELRDA----PPPAEVLAELLRLIAGRVLVVHVAEIDVRFINAALKPFGGRLRRPILD 152 Query: 121 RVWHHRLADLAAYAAGKLNID-PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L A G+L D P L + LG+P+ +H+A+ DA TA F Sbjct: 153 TARLAMTLHLNAQWLGELPRDMPAPAVELRGLTGALGLPIYAQHNALNDAVTTAQLFIA 211 >UniRef50_B1I645 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I645_DESAP Length = 247 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 16/173 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYY 61 + +V+D ETTG + + +G + V G + + P + G Sbjct: 54 RFVVLDTETTGFEPAGGDEVIALGAVVVKNGRPRPEQVFHRLVNPGRSIPPLVTALTGIS 113 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E ++L + AG + FD + + + Sbjct: 114 DE----AVAGEDDLVAVLPCFLEFLGNDCLAGHHLGFDLEFLN-------LRLREFSGAA 162 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + L + + LDA+ G+ RH+A+GDA TA Sbjct: 163 IRNPALDTAVI---ARALYPALKYFSLDAMLSFHGIEPAGRHTALGDAWLTAR 212 >UniRef50_C9RIR1 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIR1_FIBSS Length = 215 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 30/199 (15%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLN----VDTGESLY--FVPHITVEQLAAADP-K 53 + + + DLETTGL +E+G + V G + T+ + P + Sbjct: 4 LPPKFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPNMLIPAE 63 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSM 112 A +N ++ + A + + G+ N FD++ + Sbjct: 64 ATNVNHITDKMVENA----PPVGEALKQFTAFCGPGSILLAHNANFDASFLRTAYEQN-- 117 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---G-----VPVVNRHS 164 + + + A K + L +A G + H Sbjct: 118 --------PQFTPGNPVVDSLAISKTIMPELANHKLGFMANMFMKRGEISMTIDEEKMHR 169 Query: 165 AIGDAAATAFCFDMLRHTA 183 ++ D F L Sbjct: 170 SVYDCEMLMEVFVALLRRR 188 >UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K987_THASP Length = 482 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 52/171 (30%), Gaps = 16/171 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L +D+E+TG E+ +L V+ GE + V P E+ G + Sbjct: 6 RLAFIDVESTGAHPVRDRITEIAILRVEDGEVVAR-WESLVAPGQPIPPLIEEVTGISDA 64 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + V V L G F + FD + F Sbjct: 65 MVAEA----PAFEVLADTVAALLEGCVFVAHSARFDYGFIRNAFTRIGREFEA------- 113 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 L + GLDA+ ER G+ RH A+GD Sbjct: 114 ----PVLCTVKLSRALYPEHHRHGLDALIERHGLVCAARHRAMGDVEVLWQ 160 >UniRef50_A4T616 DNA polymerase III, epsilon subunit n=11 Tax=Mycobacterium RepID=A4T616_MYCGI Length = 345 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 16/173 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+G A V V L + ++ + ++ P ++G Sbjct: 32 WAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPGVDPGP--THVHGLTAEM 89 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + G++ + LRG T N FD + ++ + TV Sbjct: 90 LEG----QPTFGDVVGDLCEVLRGRTLVAHNVGFDYSFLSAEAELVGAELPIDTV----- 140 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + E L+ +A GV + H A+ DA A Sbjct: 141 -----MCTVELARRLDLGLENLRLETLAAHWGVTQMRPHDALDDAMVLAQILK 188 >UniRef50_UPI0001AEDE41 DNA polymerase III n=2 Tax=Streptomyces RepID=UPI0001AEDE41 Length = 641 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 54/181 (29%), Gaps = 16/181 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VD+ET+GL + V ++ + ++ P +E++G Sbjct: 19 DWALVDVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTLLDPGCDPGP--VEVHGLTAE 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L G + L+ N FD +A + R+W Sbjct: 77 RLRGA----PTFDQVAGRIGAMLQDRVLVAHNAQFDYDFLAHEFARA----------RMW 122 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L A + PT+ L +A VP H A+ D A A Sbjct: 123 LPVSQRLCTLALNRQVDPPTDDMKLGTLATHYDVPQQRAHDALDDTRVLAGILRASLREA 182 Query: 184 A 184 A Sbjct: 183 A 183 >UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bacteria RepID=Q0HVL5_SHESR Length = 239 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 18/181 (9%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A L+V+D ET+GL + A +E+G + ++ G+ + + + G Sbjct: 37 ANTLVVLDFETSGLSPNQGARAIEIGAVLIEQGQITARFSELM-NPGFRINSFIEDYTGI 95 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L A A ++ + N AFD + + + Sbjct: 96 SNQMLAHAA----PCAEVMARFAAFIGKHHLVAHNAAFDQRFLDAEFAQIGHQYPGQFG- 150 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDML 179 + + L + +P H A+ DA T + + Sbjct: 151 ----------CSLLLARRLYPEAINHQLATLVRHKQLPTDGTFHRALADAEMTGHLWLRM 200 Query: 180 R 180 Sbjct: 201 L 201 >UniRef50_C9XLH5 Putative DNA polymerase III, epsilon chain n=5 Tax=Clostridium RepID=C9XLH5_CLODC Length = 168 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 26/184 (14%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVD------TGESLYFVPHITVEQLAAADPKAME 56 K+ +VVDLETTGLD G ++ E + ++ E Sbjct: 2 KEYVVVDLETTGLDPYK------GCEIIEIGITEIKNEQIVKNYSRLIKPKGIISSFITE 55 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 + + E + + + ++ T N FD + + Sbjct: 56 LTHISNEMVENE----EPLELVLPRFRKYIGDRTIIAHNAKFDLKFLNYYLRMLDLEPI- 110 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 ++ + + K + + L+ + +N H A D ATA F Sbjct: 111 -------NNYICTVELLKKCK--SYKGKNKKLETACAYYNIENINAHRADSDTLATAKLF 161 Query: 177 DMLR 180 ++ Sbjct: 162 LKIK 165 >UniRef50_Q3B459 DNA polymerase III, epsilon subunit n=8 Tax=Chlorobiaceae RepID=Q3B459_PELLD Length = 236 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 13/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAAD-PKAMEINGYYE 62 +++V D ETTG D T + +G + ++ + + +A+ ++G + Sbjct: 48 RMVVFDTETTGFDLKTDGVISIGAVAINGLSINVADSFEVLVRQDRVGRSEAVAVHGLLK 107 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVAR---QRVTYSMPFSPLTV 119 + + A A +++ + + +FD ++ R + + + Sbjct: 108 KDIAGGAGE----VEAAEAFLEYIGSSILVAQHASFDVAMLNRILSETFRIRLFNGVVDT 163 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + LD + +R G+ + +RH+A GDA TA L Sbjct: 164 ASLAKR-----LEKGPYYNLAHKAGEYRLDHLCQRYGIRLYDRHTAAGDAFLTAQLLQRL 218 Query: 180 R 180 Sbjct: 219 L 219 >UniRef50_Q3SKJ9 DNA polymerase III, epsilon subunit n=4 Tax=Proteobacteria RepID=Q3SKJ9_THIDA Length = 470 Score = 140 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 59/185 (31%), Gaps = 20/185 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYY 61 ++L VDLETTG + E+ V + T+ A P+ ++ + G Sbjct: 8 QRLAFVDLETTGANAARDRVTEI---GVVVVDGDRVETWSTLVNPERAIPQFIQQLTGIS 64 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A E+ + L G F N FD + + F Sbjct: 65 NEMVADA----PTFARVADELAERLDGRLFIAHNARFDYGFLKHEYQRLGRRF------- 113 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDMLR 180 R L + LD++ R G+ +RH A+ DA + L+ Sbjct: 114 ----RADVLCTVRLSRRLFPEHYRHNLDSLIARHGLATEGDRHRALADADLIWQFWRTLQ 169 Query: 181 HTAAA 185 A Sbjct: 170 REHEA 174 >UniRef50_D2QAZ6 DnaQ DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium RepID=D2QAZ6_9BIFI Length = 317 Score = 140 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 63/180 (35%), Gaps = 18/180 (10%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +K VVD ETTGL+ +E+GL++V L + A I+ Sbjct: 3 SKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVHRDI--GAQWIHHI 60 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + + E++D L G F N AFDS + + + Sbjct: 61 S----AVELIHAPEFEGIARELRDLLAGRVFVAHNVAFDSKFLLSEYRRLG-----TDIP 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 H L + KL+ + L G+ + HSA+ DA ATA L Sbjct: 112 VNSHTMLCTM------KLSRSLIGVGSLADCCREFGIDNEDAHSALSDAHATALLLGRLM 165 >UniRef50_C6IVA0 DNA polymerase III n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVA0_9BACL Length = 247 Score = 140 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 54/179 (30%), Gaps = 14/179 (7%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V DLETTG Y + G + V+ V + + + +E+ G Sbjct: 64 AVFDLETTGFHYHYGDEILSFGAIKVEGERITDEVYYSLAKPACQIPERIIELTGITPEM 123 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 A + A E ++ A D + T Sbjct: 124 ----AQSAPSLLEALREFMAFVDDRVLVAHGSAHDKAFLDVALWK--------TTKAHLG 171 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 HR+ D A KL D LD +PV RH A+ D+ TA + L Sbjct: 172 HRVLDTMMIAR-KLEPDRRISGSLDEWLAVYEIPVTKRHHALEDSKMTAQLWTALIQRL 229 >UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N494_SLAHD Length = 986 Score = 140 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 59/185 (31%), Gaps = 18/185 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + L+V+D ETTGL Y+ ++ ++ GE + V + + + Sbjct: 2 LDRNLVVLDTETTGLSYNHDELTQIAAARMECGEITDWFVTF-VNPGKPIPDEIVRLTNI 60 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + + A + +++ N FD + + + Sbjct: 61 HDE----DVVDAPTPDEARALLAEFIGDAYVVAHNADFDKHFCTKSESGECLNRN----- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + A ++ + + L + P+ H A D A + +L Sbjct: 112 -------IWVDSLALARIALPRMKSHRLIDLVHAFDAPIST-HRADADVEALCAVYRILL 163 Query: 181 HTAAA 185 A Sbjct: 164 SAVAT 168 >UniRef50_A4U2R7 DNA polymerase III, epsilon subunit n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U2R7_9PROT Length = 459 Score = 140 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 15/178 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 ++V+D ETTGLD V VG + + P A I+G E Sbjct: 256 PVVVLDTETTGLDAARDAIVSVGAVRCHGSRIYRAAMLDLLVNPGRRIPARATAIHGIDE 315 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + E+ + G FD ++ + ++P Sbjct: 316 SMVAGK----PDLAASLPEIAAIMDKAVVVGHQIGFDLALLRHGTERLGLDWTPP----- 366 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L +D A R+GV + RH+A+GDA TA + L Sbjct: 367 -----PRLDILLLSAALAPDESGHEIDDQAARMGVNISGRHTALGDALVTAELWVRLI 419 >UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WWQ3_ALIAD Length = 240 Score = 140 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 26/180 (14%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +VVD ETTGL + VE+ L+ V V V+ P+A ++ Sbjct: 4 QEARFVVVDTETTGLPPEG-RVVELALVEVGLECEPQIVYSALVDPGCPIPPEASAVHHI 62 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 +R + + + + W +V ++ N FD ++ G Sbjct: 63 TDRDVAGK----PRLSQVWPKVLGYIGDAILVAHNAEFDRGML-------------PETG 105 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCFDM 178 R W + + + + LG+ V H A+GDA TA F Sbjct: 106 RPW------ICSKRLAQHLWRDAPKHSNQVLRYWLGIDVEVGQPHRALGDAIVTAHVFQR 159 >UniRef50_Q482N7 DNA polymerase III, epsilon subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q482N7_COLP3 Length = 256 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 16/193 (8%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAA------ADPKAM 55 K+LI++D ETTG++ + VE+G + + + H ++ L + + + Sbjct: 14 KRLIILDTETTGINPREGHRIVEIGCVEMINRQLTGRTYHAYIKPLDQRGQVFQMEQEVI 73 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 I+G L + + E D++RG N FD + + ++ Sbjct: 74 NIHGLTNEFLADK----PIFSQVVHEFIDFIRGAELVIHNSKFDVGFMDHEFSLFNSMGR 129 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-VVNR--HSAIGDAAAT 172 + K + + LD +A V +V+R H A+ DA Sbjct: 130 SQDKVPMTEDICTITDTLKVSKDELGSPK--TLDYLARFYRVDKLVDRTYHGALIDAQLL 187 Query: 173 AFCFDMLRHTAAA 185 A+ + + ++ Sbjct: 188 AYVYIEMTRKQSS 200 >UniRef50_C7RR73 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RR73_9PROT Length = 484 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 62/176 (35%), Gaps = 18/176 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + L+ VDLET+G ++ + +EVGL+ VD + + E + P + G + Sbjct: 10 EPLVFVDLETSGANFASDRVIEVGLVEVDADGVREWSVLVNPEAPIS--PFITRLTGIDD 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + D LRG N FD + + + F Sbjct: 68 AMVG----SAPTFRQLAPTLLDRLRGRLLVAHNARFDYGFLQCEFKRLGVEF-------- 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFD 177 R L + LDA+ R G+ V NRH A+ DA + Sbjct: 116 ---RTPTLCTVKLSRKLFPEHHRHNLDALVTRHGLKVAGNRHRALADARILWELWQ 168 >UniRef50_C8NPX3 DNA polymerase III epsilon subunit n=5 Tax=Corynebacterium RepID=C8NPX3_COREF Length = 494 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI--TVEQLAAADPKAMEINGYY 61 + D+ET + D ++GL+ + G + E L +P + I+G Sbjct: 125 DFVAFDVET--ANDDWGSICQIGLVRYENGVEVDSTSWFCTPPEPLNFFEPANIAIHGIT 182 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E A ++ D++ N FD T ++R + G Sbjct: 183 AEQVAGE----PAFAEVLPKMVDFVGDLPLVAHNAQFDFTAISRACAAAGIEAPVFNFG- 237 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + A + + L VA+ LGV + H A DA A A L Sbjct: 238 ---------CSLALSRSSRLKFHNHRLPTVAQALGVELRKHHDATEDARACAGITIELAR 288 Query: 182 T 182 Sbjct: 289 R 289 >UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacteria RepID=A1K1I0_AZOSB Length = 231 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 57/182 (31%), Gaps = 18/182 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V+D ETTG+ + A P E+ ++ V G + + + + G Sbjct: 30 TYAVIDFETTGMAPEHGARPTEIAVVLVRNGCVIDRYQSLM-NAGVHVPYEIQALTGITN 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + D++ + N AFD + Sbjct: 89 AMVRAA----PPLAQVMAQAADFVGSHALVAHNAAFDRKFWDAELDRLGR---------- 134 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLRH 181 + + + + L + LG+P R H A+ DA ATA F + H Sbjct: 135 -RREADFVCSLLLSRRVFPDSPNHKLGTLVRTLGLPASGRFHRALADAEATAQLFARIAH 193 Query: 182 TA 183 T Sbjct: 194 TL 195 >UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase III n=3 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F5B Length = 203 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 66/186 (35%), Gaps = 22/186 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEING 59 M + V DLETTGLD E+ + D IT P+ + + G Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDIRITKNSGTKLTPEIVNLTG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E + R + E A + ++ G + FD +AR + P S + Sbjct: 61 ISESMM-RGGVPEPV---AIMLLSCFMSGTIVVAHHAPFDLAFLARYQFE---PDSFVCT 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + +D E L +VAER G+ + H A+ D AT F + Sbjct: 114 RALSKLVESD--------------ESASLASVAERRGIELTGHHRAMNDVEATVKVFQQM 159 Query: 180 RHTAAA 185 + A A Sbjct: 160 KAEADA 165 >UniRef50_Q854A2 Gp164 n=1 Tax=Mycobacterium phage Omega RepID=Q854A2_9CAUD Length = 178 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 78/187 (41%), Positives = 112/187 (59%), Gaps = 13/187 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M++Q+IVVD ET GL + A +E+ +NV+TGE VP +T QL++ +P+A+ IN + Sbjct: 1 MSRQIIVVDTETGGLGPN-APVLEIAAVNVETGEEFRVVPFVTAAQLSSCEPEALAINRF 59 Query: 61 YERGLYREALTEQQT-AVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 YER ++ + L + + A+ ++ L GN FAGSNPAFD+ ++A+ Sbjct: 60 YERRVFADMLEDAEGNKNAFDWLRSMLDGNVFAGSNPAFDAPLIAKLL-----------N 108 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 G WHHR L +YAAG L + EL GL+ V E LGV + HSA+GDA ATA CF +L Sbjct: 109 GEPWHHRKLALESYAAGVLGLPLDELPGLNKVCEILGVENEDPHSALGDARATAECFRIL 168 Query: 180 RHTAAAH 186 R A + Sbjct: 169 RGMAEQN 175 >UniRef50_C1XKD8 DNA polymerase III, alpha subunit (Gram-positive type) n=2 Tax=Meiothermus RepID=C1XKD8_MEIRU Length = 261 Score = 139 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 18/186 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++V+D+ETTGL +E+ L+ ++ G F + L P + G Sbjct: 79 QGEAVVVLDIETTGLSPTDHEIIELALIRLENGRRTVFERLVNPGVLIP--PFISRLTGI 136 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A E L T N +FD + + Sbjct: 137 RSQDVRDAA----DIYTVLEEAWPLLDNATLIIQNASFDLGFLQPRFKRLGY-------- 184 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDML 179 R+ + + + + + GLD++A + P+ RH A+GD T + Sbjct: 185 RLDNPVVDTIH---WARKALPGLTKRGLDSLAWAFDLGPIPARHRAMGDVETTLQVAHEM 241 Query: 180 RHTAAA 185 + A Sbjct: 242 YYMLTA 247 >UniRef50_D0RQR6 DNA polymerase III PolC-type (PolIII) n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQR6_9RICK Length = 223 Score = 139 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 16/186 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYY 61 V D ETTGL+Y+ + V + V + + + P+ +I+ Sbjct: 26 TFSVFDTETTGLNYNSGDKIISVSGVKVQNFQIDTEGKLDEFCDPMVEITPENEQIHHIS 85 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + + + + + + + N FD + + + Sbjct: 86 NRMVKGK----PNIYDLESKFRGFFKRSVLVAHNVKFDCNFLISNLSHTKLESRIREAVK 141 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDML 179 + D Y+AG + L A+ + L + + RHS++GD+ TA F L Sbjct: 142 L------DTVLYSAG--VYPDLKSYELSALCDELNITHHDQLRHSSLGDSIITARLFIHL 193 Query: 180 RHTAAA 185 + A Sbjct: 194 LKKSKA 199 >UniRef50_O29290 DNA polymerase III, subunit epsilon (DnaQ) n=1 Tax=Archaeoglobus fulgidus RepID=O29290_ARCFU Length = 205 Score = 139 bits (351), Expect = 5e-32, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 10/173 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +DLETTGL+ + +G + + L + + + ++M+ +G Sbjct: 10 FLSIDLETTGLNQKKDEIIAIGAVPIIGTRILAGESYYRLLRPEKFKHESMKFHGLDPAR 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L T + EV D LRG G D + R + Sbjct: 70 L----KTAHDFSEIAEEVADLLRGKVLVGYAIELDYGFLKRALKREGYKVENKRID---- 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + D L P LD +A++ V V RH+A+ DA TA F Sbjct: 122 --VIDFEKAVCYILGERPVGEMTLDNLAKKYRVEVSYRHNALADAFITAQIFQ 172 >UniRef50_C8P2F2 Gram-positive family DNA polymerase III, alpha chain n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P2F2_ERYRH Length = 200 Score = 139 bits (351), Expect = 5e-32, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 19/178 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 V+DLETTG E+ + + + F + + + P +E+ G E Sbjct: 15 FTVIDLETTGRSNKFEDITELSAIKYRNYKQVDAFSTLVKPDN--SILPFVVELTGITEE 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV-ARQRVTYSMPFSPLTVGRV 122 + + + D++ + G N FD +V T + Sbjct: 73 MVSDA----PKIDQVIKQFVDFIGTDVILGHNVMFDYGLVYDAYLATVGLRMHN------ 122 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +L ++ L+ + V + H D TA + ++ Sbjct: 123 -----DYVDTLRVSRLLNKDSKNHKLETLCAYFDVERLVGHRGSEDCLQTAEVYIKMK 175 >UniRef50_C0Z5S3 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5S3_BREBN Length = 235 Score = 139 bits (350), Expect = 7e-32, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 16/177 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYY 61 +++VVDLETTG D + +G + + L T+ A P + + G Sbjct: 52 EVVVVDLETTGFYPDHGDAIISMGAVAMRGEHLLLGDSFYTLVNPGRAIPPHIRSLTGIT 111 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A ++ + + + T R Sbjct: 112 DDMVADA----PPLLEALSRFFQYVGDRPLVAHHSRHEREFLRSGLWK--------TSRR 159 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + HR+ D +L +P LDA+ +P+ RH A DA A + Sbjct: 160 PFTHRMLDTMLL--IRLLNNPIGNGSLDALCAAHDIPISRRHHAYCDALAAGTLWAK 214 >UniRef50_A7K086 DNA polymerase III epsilon subunit n=22 Tax=Vibrionaceae RepID=A7K086_VIBSE Length = 248 Score = 138 bits (349), Expect = 8e-32, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 57/179 (31%), Gaps = 8/179 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 + VD ETTGL+ + + +GL+ H V + +++ I+G + Sbjct: 57 PFVSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWVVNPNRELNEESVVIHGITD 116 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLTV 119 + Q GE+ D L G + + + F + Sbjct: 117 SEVKNA----PQLTHILGEILDALSGKVVLVHYKNIERQFFNNALLNSIGEGIHFPVVDT 172 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H + KL L ER +P H A+ DA ATA F Sbjct: 173 LDIEHAIQRRECSGLFNKLKGKKPGSVRLGHARERYRLPAYQPHHALTDALATAELFQA 231 >UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NF23_9LACT Length = 875 Score = 138 bits (349), Expect = 8e-32, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 18/183 (9%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ V+DLETTG Y+ + G + + + + + + + + G Sbjct: 1 MHRKYAVIDLETTGPKYEQGDRIFQFGCTLITDHKIVE-HITLNINPEQSIPFEIQLLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYSMPFSPLT 118 + + + + L G T N FD + + Sbjct: 60 VTNADVEKA----PYFDEVAMNIYNLLEGRTLVAHNVGFDGPFIITALKEALGIELE--- 112 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + ++ L + L +P H+A DA ATA F + Sbjct: 113 --------VPFIDTVQLAQICYPSAISYRLSDLTNMLKIPHTQVHTAGSDARATAQLFLI 164 Query: 179 LRH 181 L+ Sbjct: 165 LQE 167 >UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Burkholderia cepacia complex RepID=A0K8A7_BURCH Length = 212 Score = 138 bits (349), Expect = 8e-32, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 18/181 (9%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + V+D ETTGL + E+ ++ + G+ + + + + G Sbjct: 9 QTVAVLDFETTGLSPNLGDRATEIAVILLRNGQVVDRFQSLM-NAGRRIPSDVVALTGIT 67 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + T + E ++ + N FD + M Sbjct: 68 NDMIA----TAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSADHAFA-- 121 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 + L ++AE L +P R H A+ DA + L+ Sbjct: 122 ---------CTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMVDAEMAGHLWCRLQ 172 Query: 181 H 181 Sbjct: 173 Q 173 >UniRef50_Q31RN6 Exonuclease n=2 Tax=Synechococcus elongatus RepID=Q31RN6_SYNE7 Length = 256 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 48/171 (28%), Gaps = 12/171 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A VVD+ETTG A +E+G+L E + F + + G Sbjct: 19 AATFTVVDVETTGFKPPQARVIELGILQATLAEGIQFQQAELLNPGIPIPEAIAQFTGIT 78 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E + L+ N FD + + + F + Sbjct: 79 TDLIATADPPE----SVLPPLLPRLQTGILVAHNLPFDYRFLTAEYQQLGLDFERSPTEQ 134 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + + + L + + G PV H A D A Sbjct: 135 L--------CTVQMSRQLLADLPSRSLPQLVQHFGFPVGQSHRAAADVEAC 177 >UniRef50_B7V8D9 Probable nuclease n=6 Tax=Pseudomonas aeruginosa RepID=B7V8D9_PSEA8 Length = 208 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 16/187 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGY 60 A+++I +DLETT LD A + +G + V G+ + + VE + D +++ I+ Sbjct: 29 AEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKL 88 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPL 117 L + Q A +V ++ G +FD ++ R + + Sbjct: 89 RRADLEGQL----QLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSI 144 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + ++H ++ + D D +A L VPV RH+A+GDA A A F Sbjct: 145 EISSLYHRKV--------SRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFM 196 Query: 178 MLRHTAA 184 L A Sbjct: 197 RLLKGPA 203 >UniRef50_Q11G58 DNA polymerase III, epsilon subunit n=1 Tax=Chelativorans sp. BNC1 RepID=Q11G58_MESSB Length = 498 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 15/181 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYERG 64 + D ETTGLD TA V+V + + G ++ + P ++ I+G + Sbjct: 16 VAFDTETTGLDTRTARVVQVAGVAISRGAVRQDESFESLVHPGMSIPPDSIRIHGITDGM 75 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L A W + + G FD I+ R+ + Sbjct: 76 LREA----PAFAAVWRSFEMFRGVRPLIGYAVGFDLAIIEREAARAGIR----------R 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 R L ++ L+A+A LG ++ RH A+ DA A A F L Sbjct: 122 KRPRTLCVRTLSRIVNRDLRGHSLEALAAWLGFEIIGRHQALDDAMAAAKVFTGLLPRLQ 181 Query: 185 A 185 A Sbjct: 182 A 182 >UniRef50_D1BFD5 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BFD5_SANKS Length = 611 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 57/182 (31%), Gaps = 19/182 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+GL ++V + V+ +L ++ P + ++G Sbjct: 22 YAVVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPGVDPGP--VHVHGLTRER 79 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L Q G + + +R N FD +A + P S Sbjct: 80 LAGA----PQYQDVAGTLDELVRDRVLVAHNARFDWGFLAAESDRARAPLSVDR------ 129 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L A + P L VA GV H A D LRH+ A Sbjct: 130 ----RLCTLALSRRLDLPVSDLRLATVAAHWGVQQRRAHDAEDDVRVLVEV---LRHSLA 182 Query: 185 AH 186 A Sbjct: 183 AA 184 >UniRef50_A1VJH5 Exonuclease, RNase T and DNA polymerase III n=8 Tax=Proteobacteria RepID=A1VJH5_POLNA Length = 220 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 69/187 (36%), Gaps = 12/187 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 + + +D ETTGL+ T + +G + + + + + +++ ++ Sbjct: 41 EWVALDCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRLSAESVRVHRLR 100 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR---VTYSMPFSPLT 118 E+ + + A ++ ++ G FD ++ R + +P + Sbjct: 101 EQDVAQGI----SADEAMMKLMYFIGSRPLVGYYLEFDLAMINRVLFPMLGMGLPQPKIE 156 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 V +++ + A + +++ + L +P+ + H A+ DA A F Sbjct: 157 VSSMYYDYKFHQLPHHARD---SGSIDLRFESLMKDLNLPLWSAHDALNDAIMAALAFLK 213 Query: 179 LRHTAAA 185 LR A Sbjct: 214 LRQLRAG 220 >UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5I0_9CHLA Length = 231 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 46/174 (26%), Gaps = 20/174 (11%) Query: 9 DLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYRE 68 D ETTG+ D +E+ + + + + P+A I+ + + Sbjct: 7 DTETTGIKADRDYVIELAVYDPVGNRTFER----LINPGVPIPPEATAIHHITDEMVANA 62 Query: 69 ALTEQQTAVAWGEVQDWL-RGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 E +++ N FD + + + P Sbjct: 63 ----PSFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKF------- 111 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + L + G+ N H A+ D F + Sbjct: 112 ---LDTLKWARRYRNDLPRHTLQFLRGIYGIAENNAHRALDDVIVLHQVFSAML 162 >UniRef50_B9XHY8 DNA-directed DNA polymerase n=1 Tax=bacterium Ellin514 RepID=B9XHY8_9BACT Length = 199 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 57/187 (30%), Gaps = 17/187 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEING 59 M + ++ DLETTGL +++ + + G V + G Sbjct: 1 MHQDYVIFDLETTGLSSYQDEIIQIAAVRMSNGVVCSSDSFFSYVNPGRSISSFITSYTG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLT 118 + + + + + T N FD + ++P Sbjct: 61 ITNQDVGDA----PRVGTVLKDFSRYAGKATLIAHNGHRFDMKFLHAGCSRNALP----- 111 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCF 176 V +H L+ GK GLD+V RL + RH A GD A Sbjct: 112 TRAVNYHDSIYLSRLVWGKCP----GGHGLDSVLNRLQISNHGVRRHDARGDVELLAEAV 167 Query: 177 DMLRHTA 183 + + H Sbjct: 168 EKMWHLL 174 >UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD Length = 1043 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + K ++V+D ETTG+ + ++ + G+ + + V + + Sbjct: 33 LDKDIVVIDTETTGISFVRDELTQIAAARMVEGKIVDWFVTF-VNPGRPIPEEISHLTSI 91 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 YE + A ++ D++ + N AFD + P T Sbjct: 92 YESDVADA----PSPEEAVFQLVDFVGESCLVAHNAAFDKHFCTK----------PATGE 137 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + H+ D + ++ + + L + P+ H A D A F +L Sbjct: 138 SLTHNIWID--SLDLARIALPRLKSHRLLDLVRAFDAPLST-HRADADVEALCAVFRILL 194 >UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Campylobacter RepID=B9KCR0_CAMLR Length = 254 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 22/181 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 VVD+E+TG + +E+G + + + + F + VE + E+ G Sbjct: 72 FCVVDIESTGG-IKSGQILEIGAVKIQNYKEIDRFESFVKVE---SIPENITELTGISLD 127 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + +L+ + F N FD +++ G + Sbjct: 128 MVENA----PSLKTVLNNFKLFLKDSIFVAHNVRFDYHFISKAM-------YENDFGVLL 176 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LRHT 182 + RL + + GLDA+ E L + H A+ DA A + L+ Sbjct: 177 NRRLCTIDLAKKC----IESPKYGLDALKEFLCIE-SKHHRALSDALAASEILKYCLKKI 231 Query: 183 A 183 Sbjct: 232 P 232 >UniRef50_Q1N3V9 Exonuclease n=1 Tax=Bermanella marisrubri RepID=Q1N3V9_9GAMM Length = 224 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 58/178 (32%), Gaps = 14/178 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+D ETTGL + +G + +++G+ ++ ++ I+ + Sbjct: 42 RYLVIDTETTGLSPKDNTLLSIGWVAIESGKVKLNSARHRYIKVKEGVGQSATIHQIRDC 101 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A EV ++ + + D + + + Sbjct: 102 ELQDGV----TINQAMAEVLTAMKDSVLVFHHAPMDMAFLNKYCRQLY-------NAPLL 150 Query: 124 HHRLADLAAYAAGKLNIDPTELE---GLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L + ++ D L +R G+ H+A+ DA ATA Sbjct: 151 MPLVDTLNIEKSRHMHNDQARKNGFFRLAHCRQRYGLSAHQGHNALTDAIATAELLLA 208 >UniRef50_UPI000196B395 hypothetical protein CATMIT_00376 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B395 Length = 212 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 26/191 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQL------------AAA 50 IVVD+E TGL+ +T +EV + + + F I + Sbjct: 14 TYIVVDIEATGLNPETERLIEVAAIKYINHKEVARFSELINPLRDQLPVDLLDKDKTIYI 73 Query: 51 DPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY 110 + G R L+ + E ++ + G N FD + + Sbjct: 74 SDFIENLTGISNRMLHDARGEK----DVLREYIKFIGNDVIIGHNVRFDIRFIYDALLR- 128 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 G ++ + D A KL + + L +A+ + + H A+ D Sbjct: 129 -------DYGVLFQNDYIDTLKIAR-KLLHEDLKRYRLKDLADHYHIDYSHAHRAVNDCE 180 Query: 171 ATAFCFDMLRH 181 T ++M+ Sbjct: 181 ITHDVYEMMME 191 >UniRef50_A6D4K1 DNA polymerase III subunit epsilon n=1 Tax=Vibrio shilonii AK1 RepID=A6D4K1_9VIBR Length = 176 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 16/177 (9%) Query: 9 DLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYERGLYR 67 D ETT LD A V + + + P + + + +++I+ L Sbjct: 2 DCETTSLDPSVAEIVTIAATKIIDNRIITSDPFEVRLSAPKSLGEDSVKIHHITHDELKH 61 Query: 68 EALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTVGRVWH 124 A + +++ G + +D I+ R + +P + V ++++ Sbjct: 62 GI----SEKQAMSALLNFIGNRPLVGYHIRYDKKILDRAAKKHLGFPLPNELIEVSQIYN 117 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 +L L L L+A+ L +P ++H A+ DA A A + L Sbjct: 118 DKLLKLLPNGYFDL--------SLEAICRHLQIPNYHKHDALEDAKAAAMVYLKLTR 166 >UniRef50_C4XRC4 DNA polymerase III epsilon subunit n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XRC4_DESMR Length = 242 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 55/184 (29%), Gaps = 6/184 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 + +V+D E TG D V V + + + + + P ++ ++G Sbjct: 45 EFVVLDTELTGFDPKRDAIVSVAAVRLRGLSIMAGETFAALTRPQRDVPRQSSLVHGLTA 104 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTVGR 121 L + A + D++ G + D + Y + + Sbjct: 105 STLSQAA----DLEAVLLRLLDFIGPAVIVGHHVDLDMGFLNAASRRYFGDELAAPCIDT 160 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + L ++ R G+P H A DA A A+ F L Sbjct: 161 LRLAMAYEEKRLSLEGGAGLEHAAFDLPSLCRRYGLPEFAAHDARHDALAAAYLFVYLAK 220 Query: 182 TAAA 185 Sbjct: 221 KLGQ 224 >UniRef50_B8HW82 UvrD/REP helicase n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HW82_CYAP4 Length = 829 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 16/177 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L+V D+ETTG +E+ + ++ G+ + + +++GY + Sbjct: 460 RLVVFDVETTGFSGAADEVIELAAIALEHGQIR--EEFNRYIRNTVPVGETQQVHGYSDD 517 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L Q A + E ++ +G G N FD +V + F Sbjct: 518 FLATHG---QPAATVFREFCEFSQGAVLVGHNLGFDIKMVTAHARRVGIEFPS------- 567 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R D A +E L +A L + H A D T + + Sbjct: 568 -PRWEDTLNLAHR---FIQSENYKLATLASSLNLSATPTHRASDDTRTTVALLEAIL 620 >UniRef50_C6UMV7 Putative DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UMV7_HODCD Length = 182 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 16/177 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYYERG 64 I++D ETTGL T +E+ + ++ G H A ++G Sbjct: 9 IILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYFNPQPVKVSRSAFNVHGISNEF 68 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E +++ G+ N FD I+ R+ R Sbjct: 69 LSDK----PAFKSCAREFLEFVAGHELIAHNARFDLQIINRELQMAGADPIDAGCWR--- 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDMLR 180 + + K + A+ +R + HSA D A ++++ Sbjct: 122 ------DSLSIAKQLFP-NRSNSMAALCKRFNLECETETHSAARDCELLARVYELIL 171 >UniRef50_Q6NGF2 Putative DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium diphtheriae RepID=Q6NGF2_CORDI Length = 448 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 20/187 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI--TVEQLAAADPKAMEINGYY 61 + VD+ETT + D ++G V G + + L + D + I+G Sbjct: 104 DFVAVDVETT--NSDWGSICQIGAAKVRDGHVVETKEWLCTPPGDLNSFDEANIAIHGIT 161 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDS-TIVARQRVTYSMPFSPLTVG 120 + T A + + D+ A N FD + R + G Sbjct: 162 ADMVA----TAPSFAECYDQFADFAGDLPLAAHNAQFDMTAFL-RATQAADIRLRTTNFG 216 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + AA + P L V++ L V + N H+A DA A A L Sbjct: 217 ----------CSLAAARAAHLPIANHKLPTVSQHLHVELRNHHNACADAEACAGILIALT 266 Query: 181 HTAAAHL 187 + Sbjct: 267 QRLNTEI 273 >UniRef50_B6JP45 DNA polymerase III epsilon subunit n=17 Tax=Helicobacter RepID=B6JP45_HELP2 Length = 323 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 17/174 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +DLETTG +E+G + V GE + T+ ++ + E+ G Sbjct: 109 FSFIDLETTGSCPIKHEILEIGAVQVKGGEII--NRFETLVKVKSVPDYIAELTGI---- 162 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 Y + L A E++ +L + F N FD + F + + Sbjct: 163 AYEDTLNAPSVHEALQELRLFLGNSVFVAHNANFDYNFL-------GRYFVEKLHCPLLN 215 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 +L L L++ L + E LG + H A DA A+ F++ Sbjct: 216 LKLCTLDLSKRAILSM----RYSLSFLKELLGFGIEVSHRAYADALASYKLFEI 265 >UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface antigen n=1 Tax=Campylobacter rectus RM3267 RepID=B9D3Q4_WOLRE Length = 289 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 24/186 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAM-EINGY 60 + VVD+ET+G ++ +E+G L + GE + F + A P+ + E+ G Sbjct: 71 QIFCVVDIETSGG-INSGQIIEIGALKLQNGEIIGKFETFVH----APYVPENISELTGI 125 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A + + +L + F N FD + G Sbjct: 126 TAEHLKNA----PNLAFVMEKFKVFLGQSVFVAHNVRFDYGFIGATLEALGY-------G 174 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-L 179 + +HRL + + GL + E LG+ H A+ DA A A F L Sbjct: 175 ELLNHRLCTIDL----ARRTIASPKYGLGTLKEILGINN-AHHRALSDAIAAAEIFKYSL 229 Query: 180 RHTAAA 185 + + Sbjct: 230 QKLPSE 235 >UniRef50_Q04EX4 3'-5' exonuclease domain and Rad3-related DNA helicase n=2 Tax=Oenococcus oeni RepID=Q04EX4_OENOB Length = 489 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 19/190 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VDLETT + +++G+ V + + V + +++ G Sbjct: 4 NSTFSIVDLETTAPFKEGGHIIQIGISFVKNWKIIN-NFQTMVNPGVKIPEQIVDLTGIK 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + D L G F N +D + + M Sbjct: 63 NEDVENA----PYFEDLARMIHDQLSGTVFVAHNVRYDFPYLNGEFARIKMRRL------ 112 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM--- 178 RL + ++ LD + +LG+ + H A DA+ATA F Sbjct: 113 ----RLEYVDTVQLAQIVFPTMNSYKLDELVSKLGINLPRHHRADQDASATAQLFLKIHE 168 Query: 179 -LRHTAAAHL 187 L+ L Sbjct: 169 HLQEFPQNTL 178 >UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6P2_9FIRM Length = 228 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 54/186 (29%), Gaps = 13/186 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNV-DTGESLYFVPHITVEQLAAADPKAMEING 59 K+++ D ETTGLD + +E+ V + G L + + K +E+ Sbjct: 3 QFKKIVFFDTETTGLDPEKDQIIELAAALVTENGIELKIDAFCKLPEGEKIPEKIVELTH 62 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + + ++ + + N FD + M + Sbjct: 63 ITDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPKAPKL 122 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFD 177 R D + L E G+ V N H AI D A Sbjct: 123 ------RALDSLTVYKDRAAYP----HKLANAIEHYGLADKVQNSHRAIDDVLALYEVTK 172 Query: 178 MLRHTA 183 + Sbjct: 173 AMSEER 178 >UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA Length = 970 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 52/176 (29%), Gaps = 17/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYYER 63 VVDLETT ++ +++ + V + + T+ + P+ + ++ G Sbjct: 34 YAVVDLETTRTTSESGRIIQIAIAFVQNKKII--NQFSTLINPHESIPRNVVQLTGINAE 91 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + L G F N FD + + M Sbjct: 92 MVAGA----PSFEEVAESIHTMLTGTIFVAHNVNFDLPFLNAEFQRIGMNTLN------- 140 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L + ++ L + L + H A DA ATA + Sbjct: 141 ---LVAIDTVTLSQIVWPTAPGFRLVDLTSYLALVHGRPHQADSDALATAELLIQI 193 >UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHF7_9ACTN Length = 1045 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 58/180 (32%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + ++V+D ETTG + ++ + G + + V + + Sbjct: 53 LDEDVVVLDTETTGFSQNHDELTQIAAARMKQGRIVEWFVTF-VNPGKPIPEEVARLTDI 111 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + A ++ ++ + N AFD + + + + Sbjct: 112 HDEDVADA----PSPDDARIQLAAFVGDSCIVAHNAAFDKGFCTKSQGGAPLSDN----- 162 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +W + + ++ + + L + + PV H A D A + ++ Sbjct: 163 -LW------IDSLDLARIALPRLKSHRLIDIVKAFDAPVST-HRADADVEALCAAYRIML 214 >UniRef50_Q6MIB4 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIB4_BDEBA Length = 276 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 50/180 (27%), Gaps = 19/180 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + D ET+G VE G + GE + + + + + I+G Sbjct: 11 TYVAFDTETSGAYPVGHDVVEFGAVKWYKGEEVGRLQFL-FKPREPMTDFIIGIHGITNE 69 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E+ ++ +G + FD +A +P P Sbjct: 70 MVADA----PLITEKIREIHEFFKGAIVMAHHAPFDLGFMAIDFEKNQLPLLPE------ 119 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC----FDML 179 L + I E L + L + H A DA A F + Sbjct: 120 ----PALCTSLLSRKWIHGVENHKLQTLVRHLNIDGGQAHRAYDDAKACLHVGLACFAKM 175 >UniRef50_A9BFB1 DNA polymerase III, epsilon subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BFB1_PETMO Length = 187 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 56/180 (31%), Gaps = 17/180 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 + +D ETTGL+ + +E+ + + + + H V + + + Sbjct: 8 FLALDFETTGLNPELGDRIIEIAAIPIYDKKINFKYAFHTLVNPNIFIPGEVSKFHKLNN 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + ++++ + N D + M + Sbjct: 68 QDISNA----PSLSEVFPRFKEYIDDSIIVSHNVKMDLRFLDIAAKESGM-------FSI 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ + L L+ ++++ + + H A DA +TA F Sbjct: 117 DNYYIDTLEISKY----YFDKGPYNLEFLSKKFNLGIKQFHRAWDDALSTAKLFQKYIKL 172 >UniRef50_A3ZH56 DNA polymerase III n=1 Tax=Campylobacter jejuni subsp. jejuni 84-25 RepID=A3ZH56_CAMJE Length = 326 Score = 136 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 17/182 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K +V+DLETTG D +E+ L + E + + +++ E G E Sbjct: 32 KSYVVIDLETTGFDPKCNEILEIVALRYENNEKI--AEFSKLIKVSFLPSFITEFTGINE 89 Query: 63 RGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E D+L+ G+ N FD + + Y Sbjct: 90 DMIKN----CNDISQTLKEFDDFLKSGDILVAHNAHFDINFLYDNFMCYLNKPFSFDFV- 144 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 KL L + + + N H D T C L+ Sbjct: 145 ---------DTMRLSKLINQELAHHRLKDLCNQYNICYENAHRGEKDCELTHLCLMELKK 195 Query: 182 TA 183 TA Sbjct: 196 TA 197 >UniRef50_C3RPR6 3'-5' exonuclease n=2 Tax=Bacteria RepID=C3RPR6_9MOLU Length = 443 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 17/183 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + VD+ET +Y +G++NVD + + V+ A D +E+ G Sbjct: 1 MEQSITFVDVET--PNYQNNSISSIGVINVDGDGVVTTKYFL-VDPEAHFDRFNIELTGI 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W E++ + + N FD +++ Y +P P+ Sbjct: 58 TPEMVAD----QPNFKEVWSEIEPYFTNSLVVAHNAVFDLGVISACLQRYDLPIFPIFY- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 Y + P+ L+ ++ V + N H+A+ D+ A F L Sbjct: 113 ---------TCTYRISRALKIPSNSYKLNDLSSYYHVTLDNHHNALADSKACMEIFYYLL 163 Query: 181 HTA 183 Sbjct: 164 KEP 166 >UniRef50_C4DV08 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DV08_9ACTO Length = 410 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 56/175 (32%), Gaps = 16/175 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V D ETTG+ +E+ ++ D S+ + P+ I+G Sbjct: 2 YAVFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTLLNPDRDLGPQ--HIHGIK-- 57 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 R+ + + G++ L G T N FD ++ + ++ Sbjct: 58 --ARQVIDAPKFGDIAGQLIQMLSGRTLVAHNLPFDLRFLSAEFERLGH--------QLT 107 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 ++ + L + GV + HSA+ DA ATA Sbjct: 108 YNHHLGVCTMNWST-TFLEGASRSLPECCKAAGVQLTGWHSALSDAEATAALLKH 161 >UniRef50_Q15SW9 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15SW9_PSEA6 Length = 251 Score = 136 bits (343), Expect = 5e-31, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 8/179 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 L+ +D ETTGL+ T V +GL+ + H ++ K++ I+G Sbjct: 59 PLVALDFETTGLNPKTDSIVSIGLVAMTVKRIRCQEAQHWIIKPDTELKTKSVVIHGITH 118 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 + E+ L+G + + + Y + F + Sbjct: 119 SDVADA----PSFNRVLDELLQHLQGKVVVAHHKDIEVRFLNSALKHYIGEEIVFPCIDT 174 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + L T L R +P +H+A+ DA A A Sbjct: 175 MALEARFSRTIKRTFLRSLLGQKTPSIRLTDCRSRYRLPYYRQHNALTDALACAELLQA 233 >UniRef50_C0XS38 DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XS38_9CORY Length = 472 Score = 135 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA--AADPKAMEINGYY 61 + D+ET + ++GL+ V G + V + DP + I+G Sbjct: 121 DFVGFDVET--ANPAWGSICQIGLVRVIDGREVERVTWLCTPPPGLDEFDPSNVAIHGIS 178 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A E+ +++ N FD+T + + Sbjct: 179 AETVEG----SPPAAQRIDELVEFVGELPVVAHNAQFDATALREACRAVGRDIPNIMFA- 233 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 A + + L +AE GV + H A DAAA A L Sbjct: 234 ---------CTLAQSRAAKLKVQNHRLPTLAEHFGVQLEKHHDAGEDAAACAGILVGLAR 284 Query: 182 TAA 184 A Sbjct: 285 DAG 287 >UniRef50_C6NVW4 DNA polymerase III epsilon subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVW4_9GAMM Length = 475 Score = 135 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 60/188 (31%), Gaps = 18/188 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEING 59 + L +DLE TG + +EVG++ V GE + I E P + G Sbjct: 5 LDTTLAFIDLENTGGHLERDRIIEVGIILVAPAGEPEVWSTLINPE--IRLSPAISTLTG 62 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L A +++ L G + D + ++ F+ Sbjct: 63 IDPADLAHA----PTFAQVAEPLREKLAGRLLIAHDARTDLAFLRQEWRRLGQVFTA--- 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L + + GLDA+ ERL + RH A+ DA A L Sbjct: 116 --------DVLCTLRLSRSLFPDEKRHGLDAIIERLQLHSAGRHRALTDARTVAIFLARL 167 Query: 180 RHTAAAHL 187 A L Sbjct: 168 YSEQPARL 175 >UniRef50_Q0SVV0 Helicase/exonuclease n=12 Tax=Clostridium RepID=Q0SVV0_CLOPS Length = 870 Score = 135 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 55/174 (31%), Gaps = 13/174 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +IV D+E+TG+D +++ + + + + + ++G+ + Sbjct: 504 IIVFDVESTGVDVTEDEIIQIAAIKL-NKNVEVVDKFEKFLKNKKSVKDSYYVHGFSDEM 562 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L R +++ E ++ + + G N +D I+ + ++ Sbjct: 563 LQRIGEEKEK---VLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTF---- 615 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L+ +++ H A+ D AT Sbjct: 616 -----YDTLDIYRRFYPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGELLVR 664 >UniRef50_A5CX11 DNA polymerase III epsilon subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A5CX11_VESOH Length = 223 Score = 135 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 15/186 (8%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++LIV+D ETTG+ + +E+G + + + + Q ++ I+G Sbjct: 2 ERLIVLDTETTGIKPSEGHRIIEIGCIEIIDRQITKNNKYHEYIQPNRNVGDSVRIHGIT 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L ++ + E +++ T N FD + + + Sbjct: 62 DKFLTKK----PKFKEVVEEFLAYIKETTLIIHNAPFDLGFLNHELKLIGINERIED--- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + D + + P L LD++ R + R H A+ D A + + Sbjct: 115 --KCTIIDSLELSKQQR---PGTLHNLDSLCRRFKIDSSARTVHGALLDVQILAQVYLAM 169 Query: 180 RHTAAA 185 + Sbjct: 170 TGGQST 175 >UniRef50_A8VVX5 DNA polymerase III alpha subunit (Gram-positive type)-like protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VVX5_9BACI Length = 242 Score = 135 bits (342), Expect = 6e-31, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 V DLETTG + + +G ++ + V + + + G Sbjct: 59 TFTVFDLETTGFFCNLGDEVLAIGATKLNRNRIDFPEQFYEVIEPVKPMSAFVSNLTGMT 118 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A+ + ++ +G+ +FD + + + Sbjct: 119 HEEVTAGLA----FPEAFSKFLEFSKGSILVAHPASFDVQFLKILADRWRLHG------- 167 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A + P + LD + + + RH A+ DA TA F L Sbjct: 168 -YDPLYIDQYQLAKS---LYPRKRNSLDELIKLYQIETSGRHHALADAYMTATVFHHLLD 223 Query: 182 TAAAH 186 A Sbjct: 224 ELDAK 228 >UniRef50_P96171 DNA for Na+/glucose symporter, n=1 Tax=Vibrio parahaemolyticus RepID=P96171_VIBPA Length = 234 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 71/187 (37%), Gaps = 14/187 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ETTG + + + +G + + L H+ + ++++++ Sbjct: 49 LVLDFETTGFNPEVDRVISIGWVEIRNSNIRLNSARHVFINHAIDICHESVKVHHIRPET 108 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L+ ++EQ A+ ++ D + G + + + M + L + +W Sbjct: 109 LHVSGISEQ---AAFTQLLDVIAGKILVAHGCIMEQRFLEQYIK---MKYQNLKLPLIW- 161 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM----LR 180 L L L ++ + L +P H+A+ DA ATA + L Sbjct: 162 --LDTLKIEQYRTQLRPTRSDWRLSSIRKELNLPTYQAHNALNDAIATAELYLAQINCLF 219 Query: 181 HTAAAHL 187 ++A L Sbjct: 220 GLSSAPL 226 >UniRef50_A1SNC5 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Nocardioides sp. JS614 RepID=A1SNC5_NOCSJ Length = 405 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 58/175 (33%), Gaps = 17/175 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++DLETTGL VE+GL+ V ++ V P I+G Sbjct: 4 YTIIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQRDVGP--THIHGIT-- 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 R+ L + L G T N FD+ + + S+ P T Sbjct: 60 --ARDVLDAPTFQEVAPYLIGSLAGRTLVAHNARFDTQFLDYEFERASVGTRPPT----- 112 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + ++ L VP + H+A+GDA A A + Sbjct: 113 -PSLCTMQLSSSYLR----GASRKLKDCCVAANVPHADEHTALGDARAVAGLLNY 162 >UniRef50_A8F6Z7 DNA polymerase III, epsilon subunit n=1 Tax=Thermotoga lettingae TMO RepID=A8F6Z7_THELT Length = 188 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 19/184 (10%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 +D ETTG+D + VEV ++ V G LY + T+ P +E I+ Sbjct: 8 FCAMDTETTGIDPMNGDRIVEVAIVPVYKGRILYRSIYHTLVNPKIRIPATIEKIHRITN 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +G+++ ++R + FD T + + + Sbjct: 68 EDIENA----PTIEQVFGQMRSFMRRSIMIFHRAEFDLTFIDISAKEIGIFPPSID---- 119 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D + E + L +AER G N H A+ DA TA F + Sbjct: 120 ----YIDTREISEIIF----GEKKALSWLAERFGFEKPN-HRALTDAITTAKLFLKMTRK 170 Query: 183 AAAH 186 A Sbjct: 171 LAGS 174 >UniRef50_C4VNH6 DNA polymerase III n=4 Tax=Lactobacillus jensenii RepID=C4VNH6_9LACO Length = 316 Score = 135 bits (341), Expect = 7e-31, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 64/176 (36%), Gaps = 14/176 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 ++D+ETTGL E+ + V G+ + + P+ ++NG E Sbjct: 34 DYTMLDIETTGLSPYRDRVTELAGIKVRNGKVVDKYSQLVKHPKNNKVPQFITKLNGIDE 93 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + A + ++++ + G N FD + +++ R+ Sbjct: 94 KLILTQGIP---VKEAITDFRNFIGEDVIVGYNVNFDLNFIYDLCEKFNLE-------RL 143 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 ++ + ++ L +RLG+ H + D+ T FD+ Sbjct: 144 SNNYID---VLHFSRVFFKKESHNRLLDCIQRLGISESEAHRGLKDSLDTKAVFDI 196 >UniRef50_A6GRM1 DNA polymerase III subunit epsilon n=1 Tax=Limnobacter sp. MED105 RepID=A6GRM1_9BURK Length = 248 Score = 135 bits (341), Expect = 8e-31, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 58/186 (31%), Gaps = 9/186 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +D ETTGL+ + + +G + + + L + ++ A + I+G Sbjct: 54 PMLAIDFETTGLNPEYDDIISIGAVPLMSNRIMLGQSRYWILKPAAKLRSDTIPIHGITH 113 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLTV 119 + E+ + G A ++ + + F + Sbjct: 114 SDIANA----PDLIDVLPELLKMMSGKLAVAHCAAIETRFLDTALQYRVGEGIVFPVIDT 169 Query: 120 GRVWHHRLADLAAYAAGKLNID-PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H + ++ L + +R +P H+A+ DA A A Sbjct: 170 MGIERHFSDHQNSGLFERMFRKSQGASLRLPDIRKRYKLPFYRPHNALVDALACAELLQA 229 Query: 179 LRHTAA 184 A Sbjct: 230 QIQHHA 235 >UniRef50_B8EEZ7 DNA polymerase III, epsilon subunit n=2 Tax=Shewanella RepID=B8EEZ7_SHEB2 Length = 300 Score = 135 bits (340), Expect = 8e-31, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 16/173 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I +D ETTGL D +E+ + D + + V + K I G Sbjct: 19 FIALDAETTGLSADVDKIIEIAAIKFDLLSNDHPVFEALINPNVKVSRKITSITGITNAM 78 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L ++ +++ ++ N FD + + + + + Sbjct: 79 LAD----QETFTDIAQDLKQFIGDLPIVAYNAKFDKGFLDTEFANVGI---------ILN 125 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + A N+ L VAE +P+ H A DA A F Sbjct: 126 NHYHCALNLAKAAFNLP---NYKLATVAEHCSIPLNEAHRAKADAVAAGRVFM 175 >UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lactobacillus salivarius RepID=Q1WU39_LACS1 Length = 929 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 22/187 (11%) Query: 1 MAKQ--LIVVDLETTGLDYDTA---LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM 55 M K+ VVDLETTG ++ V + + + + + Sbjct: 1 MIKERIYAVVDLETTG--PKQDGSDKIIQFSCDFVQSNKIVN-HFSTLINPGMPIPVEVK 57 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 ++ G + ++ G + L+ TF N FD + ++ + P Sbjct: 58 KLTGIKD----KDVRYAPYFDEVAGTIYAMLQNTTFVAHNVNFDYSFLSSELERAGYPEL 113 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 L + ++ L +++ L + ++ H A D ATA Sbjct: 114 E----------LPMMDTVQLTQIIYPTLVSYRLIDISKYLQLSHIHPHKADSDTKATAEL 163 Query: 176 FDMLRHT 182 L+ Sbjct: 164 LINLKKR 170 >UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8I6_9BACT Length = 197 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 22/185 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 L++ DLETTG +++ + + G V E+ G + Sbjct: 3 LVIFDLETTGFSPRWNDIIQIAAVRLVDGRISDETFSTYVSPRRPVPDHITELTGITDAD 62 Query: 65 LYREALTEQQTAVAWGEVQDWLRG---NTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVG 120 + +T+ A ++ T N FD +A + +P P+ Sbjct: 63 VADA----PETSDALRAFARFVGDVGPTTLVAHNGHRFDMRFIAESCTLHGLPMRPIRF- 117 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV----VNRHSAIGDAAATAFCF 176 + + K L LD + ERLG+ RH A D A Sbjct: 118 ---------IDSIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARADVHLLANAV 168 Query: 177 DMLRH 181 + Sbjct: 169 RRMIQ 173 >UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q2F7_CATAD Length = 204 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 16/172 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+G A +EV +++VD + + A ++G Sbjct: 12 YAVVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQGGV--GATRVHGITREM 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + E+ L N AFD+ + Q + + G Sbjct: 70 VE----PAPRFEDVGMELHGLLVDRVVVAHNLAFDAKFLVTQFARLGVHSPEIAGGA--- 122 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + L E +GV + + HSA+GDA ATA Sbjct: 123 ------CTLRTSQAMLP-GPSYKLLDCCEAVGVELTDAHSALGDALATARLL 167 >UniRef50_Q9K697 BH3832 protein n=4 Tax=Bacillus RepID=Q9K697_BACHD Length = 265 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 19/176 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 ++V DLET+G D + +G + V +V P+ + E+ G Sbjct: 79 PVVVFDLETSGFYPDQGDRILSIGAVKVVGLTIQEEETFYSVVHTDTVPPENILELTGLS 138 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVAR-QRVTYSMPFSPLTVG 120 L ++R +T + + + ++ T +PF Sbjct: 139 VEELEAA----PPLTSVLESFYAFIRHSTLVAHHASHEKAFMSHVTWQTMKLPFE----- 189 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 HR+ D + + P EL LD +PV NRH A D+ TA + Sbjct: 190 ----HRVIDTSFLTK---IVAPQELVTLDDCCAYYSIPVQNRHHAFEDSLMTAKLW 238 >UniRef50_B1GYV2 DNA polymerase III epsilon subunit n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYV2_UNCTG Length = 198 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 18/168 (10%) Query: 5 LIVVDLETTGLDYDTAL-PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ +D+ETTGLD + VE+ +L V G + + + +I+ Y+ Sbjct: 18 LVFLDIETTGLDPEKGANIVEIAMLKVCGGIEERYESLVNP--GLPIPSECSKIHAIYDD 75 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + G V ++ + N FD V R+ +P V Sbjct: 76 MIKN----SPSFDEIAGNVFSFIGHSVVVCHNAPFDLLFVYRELYLAGVP--------VK 123 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 + R D A + D L +A+ +G+ RH A+ D Sbjct: 124 NIRYIDTLKLARQYFSFD---SNKLGNIADAIGIEAELRHRAMADVLT 168 >UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales RepID=Q252U5_CHLFF Length = 249 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 18/176 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGYYER 63 + +D E TGLD +E + I +++ +A ++ I+ + Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAKRFTFDNVIDSMETLINPDRVISA--ESQRIHRISDA 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + + + ++Q +L+ G+ G + FD ++ ++ F + Sbjct: 67 ML----KDQPRISEVFPKIQAFLKEGDYIVGHSVGFDLQVLTQEAERIGETF-------L 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + D A + L+A+A VP H A+ D F Sbjct: 116 SKYCIIDTLRLAK---EYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEININIFKH 168 >UniRef50_Q1QZ77 Exonuclease n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QZ77_CHRSD Length = 205 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 16/187 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 ++I +D ETT LD A V + + V G L + +++ + ++ I+G Sbjct: 30 EVIALDCETTDLDPRQADLVAIAAVKVRDGRVLTSESLDLRLQRPDSLSSDSIRIHGLR- 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLTV 119 + L + A + D++ G +D ++ R + +P + V Sbjct: 89 ---GVDLLGGEALGDALNTLLDFIGNRPLVGWCIDYDVAVINRHLRPRTGFDLPNRTIDV 145 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R++ + D +A++E LGVPV+ RH+A+GDA TA + L Sbjct: 146 CRLYAR--------ERRRAQPDVEPDLRFEAMSEALGVPVMGRHTALGDAVTTALMYLRL 197 Query: 180 RHTAAAH 186 AA Sbjct: 198 CRGQAAS 204 >UniRef50_A8TQX4 DNA polymerase III, epsilon subunit n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQX4_9PROT Length = 458 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 15/182 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYERG 64 I +D+ETTGLD A V+ G + + G + ++ I+G + Sbjct: 15 IAIDIETTGLDASRAHAVQFGAIPIAKGVLKPDDACEQMLNPGIPIPSSSIAIHGITDAM 74 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + W + + G + FD T++A + + + Sbjct: 75 VRNA----PTLSDVWPNLVGQWKNRVVIGHSIGFDLTVLAAEAKRKKLDWQKPRA----- 125 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + LDA+A L + NRH A+GDA A F L Sbjct: 126 -----LCVRMLATIAAPTLASHSLDALATWLNLETRNRHRALGDAEAAGLIFLALIPHLQ 180 Query: 185 AH 186 A Sbjct: 181 AR 182 >UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG63_THET1 Length = 960 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 20/175 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +DLE TG D + +++G + L V + + G Sbjct: 4 ERIFVALDLEMTGHDPEQDEIIQIGAVKFTQTRVLGRWG-TLVRPKVKLPFRIARLTGIN 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + +++ ++ + G + D + +A+Q Sbjct: 63 PNDLNKA----PVFDAVKDKLRSFVGDHPIVGHSIGNDLSFLAKQ------------GLA 106 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + L + L + L VA LGV V N H A+ DA T F Sbjct: 107 LDNPSLDT---WELAMLLMPSLNAYSLQGVASALGVSVDNHHDALADAEITRQVF 158 >UniRef50_B1I518 DNA-directed DNA polymerase n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I518_DESAP Length = 236 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 14/171 (8%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+D ETTGL D + V + V + + + V+ A I G Sbjct: 49 YSVIDTETTGLRPDAGDEVISVACVRVVSAKIQNDYFYTLVDPEREVPELAATITGITTE 108 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + G G N FD + + Sbjct: 109 RVQG----QPVLEKVLPRMLREMAGGVITGFNIQFDLVFLNNGLKR-------KCGTTLN 157 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + D+ + ++ GL A+A + V +RH+A+GDA TA Sbjct: 158 PPMVLDVLSL--CRILKPRARTFGLGAMAREYQISVKDRHNALGDALITAR 206 >UniRef50_C5VD41 DNA polymerase III epsilon subunit n=2 Tax=Corynebacterium matruchotii RepID=C5VD41_9CORY Length = 444 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 18/177 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYYE 62 + VD+ET + D ++G++ V G + + + D + I+G Sbjct: 101 FVGVDVET--ANADWGSICQIGVVRVTDGMQVDSHEWLCRPPAGIDHFDEGNIRIHGITP 158 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + EV ++ N FD T +R P Sbjct: 159 DMVTDA----PDFAAVFPEVVAYVADQVLVAHNAQFDLTAFSRACHATGTPVPHWKFA-- 212 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + AA + L VA+ LGV + N H A+ DA A A F L Sbjct: 213 --------CSLAASRAAKLGITSHRLPVVAQHLGVELDNHHDAVADARACAGIFVQL 261 >UniRef50_A3Y5Y0 Exonuclease n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5Y0_9GAMM Length = 230 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 15/187 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V+D+ETTGLD + +G + + G + D K + I+ Sbjct: 35 NHEYLVLDMETTGLDATKDRVISLGWVLIKNGAIKLSSARHILLDNGPVDEKTVAIHMIT 94 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + +VA ++ L + + + + + + Sbjct: 95 DQDISELGRNP---SVAMRYLRQLLLDKVLVVHHAPIEQAFLEKLWQAHKLNPLT----- 146 Query: 122 VWHHRLADLAAYAA----GKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + D A K + ++ L +R G+P H A+GDA ATA Sbjct: 147 ---QVMLDTLAMERDTQMRKQYMLTSDAFRLGECRKRYGLPDYQGHDALGDAQATAELLL 203 Query: 178 MLRHTAA 184 + A Sbjct: 204 AQLNHAG 210 >UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class) RepID=B9KXZ3_THERP Length = 982 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 22/186 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-ING 59 M + + +D+E TG+D + +EV + E L T+ Q P A+ + G Sbjct: 1 MPRIYVALDIEATGMDPERDEIIEVAAIKFREEEVL--ERFETLVQPRRPVPLAVASLTG 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 R L R ++ ++R G +P +D +++ + Sbjct: 59 LTMRDLRRA----PSFQQIAPRLRQFVRNYPIVGQSPDYDLQMLSAH--GLELRNPVYDT 112 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ L DL A L +A RLG+ V +H A+ D T F L Sbjct: 113 FRLATILLPDLPA-------------YSLAGIAARLGISVAQQHRAMADVETTMAVFLGL 159 Query: 180 RHTAAA 185 A Sbjct: 160 CDLLRA 165 >UniRef50_A6WGD9 DNA polymerase III, epsilon subunit n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WGD9_KINRD Length = 224 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 57/186 (30%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + V+D+ETTGL + V++ + +D ++ V+ P ++G Sbjct: 25 RYAVLDVETTGLRPETGDRVVQIAVTLLDARGTVERSWSSLVDPHRDPGP--THVHGITA 82 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L A V L G F N FD V+ + + Sbjct: 83 ERLAGA----PTFAQLAPTVAGLLDGRVFVAHNARFDWKFVSAEMRAAGVHL-------- 130 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF-DMLRH 181 L + + P E L +AE GV + H A D + L Sbjct: 131 --PVRQRLCTWELAQRLDLPVENLKLATLAEHWGVRQLRPHDAEDDTRVLVEVLREELLD 188 Query: 182 TAAAHL 187 A L Sbjct: 189 AAGQRL 194 >UniRef50_C6SPJ4 DNA polymerase III alpha subunit n=1 Tax=Streptococcus mutans NN2025 RepID=C6SPJ4_STRMN Length = 300 Score = 133 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 66/182 (36%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ET GLD + +E+G + +D + F + +++ + ++ G + Sbjct: 130 PYVVIDIETDGLDENENSIIEIGAVKIDPSQLEEFNYLVKYDKI--LPKQISKLTGISQE 187 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L R+ V E +++ + G FD + ++ + P + Sbjct: 188 LLDRDGKD---LQVVLQEFLNFIGNHDLVGYGINFDIKFINKKLKELNQP--------LL 236 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +R+ DL YA + + L V + + H A+ D+ + Sbjct: 237 KNRVYDLMQYAKKEKLF--LDNYKLQTVLKAYEIEDEVPHRALHDSKLIYDLSTKMNKFL 294 Query: 184 AA 185 Sbjct: 295 KG 296 >UniRef50_B9ZJP8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJP8_9GAMM Length = 246 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 58/179 (32%), Gaps = 11/179 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 + + VDLETTGLD + + +G + +D + + P+ + I+ + Sbjct: 55 RFLAVDLETTGLDPEHDAILSIGWVAMDGVRIDLSTADQRLVRADCPVPEQSAVIHRITD 114 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R A + + L+G + A + + PL V Sbjct: 115 REAAGGT----TVDSALDALFEVLQGRVLVAHHAALELGFLEEACYRLYGVRPPLPVVD- 169 Query: 123 WHHRLADLAAYAAGKLNID-PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 LA + P + L + R +P H A+ DA A F L Sbjct: 170 ----TLRLAERQLRRAGRPIPADGMRLHTLRGRYNLPQYRAHDALFDALAAGELFVALV 224 >UniRef50_B9L5N4 DNA polymerase III PolC-type n=1 Tax=Nautilia profundicola AmH RepID=B9L5N4_NAUPA Length = 255 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVD+E + +E+G + + + + + + + G + Sbjct: 65 EYCVVDIEVNNSKPNIGQVIEIGAVKIKNLKIVDTFEFLIYAK--DVPKYVERVTGINQE 122 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L EA + + +L + F FD +A Q ++ G + Sbjct: 123 MLKNEA----SQKEILRKFRLFLGESVFVAHAADFDYNFLAHQFEKENL-------GEIL 171 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L L E GL + E L +P H A+GDA TA F M Sbjct: 172 NRFLCTLTLSQKTL----EAERYGLKYLMEELKLPEETHHRALGDAKTTARIFLMCLENL 227 Query: 184 AAHL 187 ++ Sbjct: 228 PDNI 231 >UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseudomonas syringae group RepID=Q4ZNE2_PSEU2 Length = 204 Score = 133 bits (335), Expect = 4e-30, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 51/189 (26%), Gaps = 19/189 (10%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M +++ V+D ETTG+ E+ ++ ++ G + + + G Sbjct: 1 MLERIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVERFQSLM-NAGVRIPAFIEGLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + T G+V D++ N +FD + Sbjct: 60 ISNNMI----RTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRTREQSFA 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDM 178 + + + L + +P H A+ DA A Sbjct: 116 -----------CSLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAH 164 Query: 179 LR-HTAAAH 186 L H Sbjct: 165 LTNELRQTH 173 >UniRef50_A7GZ66 Nickel transport permease component NikD n=5 Tax=Campylobacter RepID=A7GZ66_CAMC5 Length = 273 Score = 132 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 23/178 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTG-ESLYFVPHITVEQLAAADPK-AMEINGY 60 ++ +VD+ET+G + +E+G L + G E F + A P+ ++ G Sbjct: 74 QEFCIVDIETSGG-ITSGQIIEIGALKIKNGVEIGRFESFVD----APFVPENITQLTGI 128 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + +L + F N FD +++ + G Sbjct: 129 SQSDLTGA----PSLKSVLERFKIFLGTSVFVAHNVNFDYGFISQSLSNIGL-------G 177 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + +L + ++ GL ++ E LG+ H A+ DA A + Sbjct: 178 MLLNRKLCTIDLSRRT----IASQKYGLGSLKELLGINNT-HHRALNDAIAATEILKI 230 >UniRef50_C9KN36 Helicase, UvrD/REP/exonuclease family protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN36_9FIRM Length = 874 Score = 132 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 60/180 (33%), Gaps = 13/180 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A+ ++V D+E TG+D +++ L + + + + + ++ Sbjct: 510 AENIVVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAE-FKRLLRARRSVGDSYRVHKIS 568 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L +E ++ E + G G N +D +I+ + +P Sbjct: 569 DAILQQEG---EEPEAVLREFCAFAEGAVIVGHNVTYDLSILGSELARLGLP-------P 618 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + R D + L+ + E V + H A+ D ATA Sbjct: 619 LSYQRYYDT--LDIFRRFYPNLPNHKLEYLGEFCKVSHRSTHDAMDDVCATAEILTYAIE 676 >UniRef50_C4XFQ7 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFQ7_MYCFE Length = 1467 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 61/184 (33%), Gaps = 15/184 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ + D+ETTGL A+ +E G L + + ++ P + G Sbjct: 430 QEYVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEPIKPFTENLTGITN 489 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + L + A ++ + L G N FD + + + F +TV Sbjct: 490 AMIEKSGL---ELKEALQKIYNDLNGKIALAHNARFDFNFLKEKFRQAKIEFPNVTV--- 543 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLR 180 + ++ + L+ VA R+GV H DA A + L Sbjct: 544 -------IDTLIVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALM 596 Query: 181 HTAA 184 Sbjct: 597 DELG 600 >UniRef50_Q3SMK3 Exonuclease n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SMK3_THIDA Length = 233 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 65/185 (35%), Gaps = 15/185 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 + +VVD+ET+GLD + +G + V G+ V Q K + I+G Sbjct: 41 RCVVVDVETSGLDPRRDRLIAIGAVAVSRGKVQLGDSLEIVLQQDTVSEKGNILIHGIGG 100 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMPFSPLTVGR 121 A A ++L + + AFD+ ++ R + FS Sbjct: 101 TAQRAGVPP----ADALLAFLEYLGKDPLVAFHVAFDAPMIRRAMKAFLGLDFS------ 150 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 H ADLA A LD + RH+A+ DA +TA LR Sbjct: 151 ---HAWADLAYVAPALYPRLARRRRSLDDWMSEFKIGNYARHNALADALSTAQLLLALRK 207 Query: 182 TAAAH 186 A Sbjct: 208 ALDAR 212 >UniRef50_B2KEE3 DNA polymerase III, epsilon subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEE3_ELUMP Length = 201 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 52/175 (29%), Gaps = 19/175 (10%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYY 61 + +D ETTGL D A E+ + + G + + T+ + + I+G Sbjct: 12 KFAFLDTETTGLSPYDGARLCEIAV--ITNGALIAKSEYGTIINPRCVISQEVINIHGIT 69 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + L + N FD +A + + + Sbjct: 70 NEMAAQA----PYFEDIAPLLIGLLTDSVIVCHNADFDIPFLAAEFARCGLRMPQTVI-- 123 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L + N + L + LG+ H A+ DA T F Sbjct: 124 --------LDTLKFARKN-GNFKKNNLGFIVSELGLSNEGWHRAMADAKMTEKVF 169 >UniRef50_C2BJB2 DNA polymerase III subunit epsilon n=1 Tax=Corynebacterium pseudogenitalium ATCC 33035 RepID=C2BJB2_9CORY Length = 232 Score = 132 bits (333), Expect = 6e-30, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 59/183 (32%), Gaps = 14/183 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG + +E+ + D L H + K I+G Sbjct: 34 FAVIDTETTGFNKRYDRIIELAVARFDESFRLVDQWHTLINPDGKQI-KNSHIHGITNAD 92 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + E + G N FDS ++ + V+ Sbjct: 93 VAHA----PTFPEVYTEFAARVDGMVLMAHNAPFDSKMILAEAERI-----TPDGEDVYF 143 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 D A A +++ L A+ + +G+ H+AI DA AT + L A Sbjct: 144 P-FVDTIALAKQMVSL---RSYKLSALLDHVGLHNPQSHAAIADATATGQMLNKLFGKEA 199 Query: 185 AHL 187 + Sbjct: 200 TKI 202 >UniRef50_Q1JYJ5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JYJ5_DESAC Length = 193 Score = 132 bits (333), Expect = 6e-30, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 14/180 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VDLETTGLD T + + + G V+ + P++++ +G + Sbjct: 6 FCIVDLETTGLDLTTDTIINAAAVKIKKGRITKIYE-TYVKPPTSIPPESIQFHGITDDM 64 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + E ++ + G + FD ++ R Sbjct: 65 L----VDKPSIGEVLPEFMTFIGDSMITGHHINFDLKMLDRHLR------ENYDCNLEGA 114 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + + KL ++ LD + + RH A+GD+ ATA F + H + Sbjct: 115 PWLDTMLLH---KLVMENNTSTQLDDLLNVYCIDCEQRHRALGDSIATAKVFLRILHELS 171 >UniRef50_A7I1F1 DNA polymerase III subunit epsilon n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I1F1_CAMHC Length = 262 Score = 132 bits (333), Expect = 6e-30, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 56/175 (32%), Gaps = 21/175 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 VD+ET G D +E+G + V E L F + + +E+ G + Sbjct: 74 DFCFVDIETNGG-IDKGQIIEIGAIKVRAKEILNTFKTFVYA---SNIPENIVELTGIHT 129 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + +L + F N FD ++ G + Sbjct: 130 NDLKNA----PHLSNVLENFRLFLGDSVFVAHNVKFDYGFISESLQKIGF-------GGL 178 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + R+ + + GL ++ E LG+ H A DA + F Sbjct: 179 LNRRIDTIDLAKRT----IAAQKYGLSSLKELLGIENE-HHRAFSDALSCYEIFK 228 >UniRef50_O67875 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O67875_AQUAE Length = 210 Score = 132 bits (333), Expect = 6e-30, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 17/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D E T LD A + +G + V E + L + + KA EI+G Sbjct: 36 RFVVFDCEATELDVKKAKLLSIGAVEVKNLEIDLSKSFYEI--LKSDEIKAAEIHGITRE 93 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + +++G+ G FD ++V + + Y + Sbjct: 94 DVEKYGK---EPKEVIYDFLKYIKGSVLVGYYVKFDVSLVEKYSIKY------------F 138 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + + + LD + + LGV + RH+A+ DA TA F Sbjct: 139 QYPIINYKLDLFSFVKREYQSGRSLDDLMKELGVEIRARHNALEDAYITALLFLK 193 >UniRef50_C2H7V1 Possible DNA polymerase III subunit epsilon n=5 Tax=Enterococcus faecium RepID=C2H7V1_ENTFC Length = 297 Score = 132 bits (332), Expect = 7e-30, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 61/179 (34%), Gaps = 17/179 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYYE 62 +V+D ETTGL + +++G + ++ E + + ++ + + +I G Sbjct: 125 DYVVIDFETTGLSPLDSEILQIGAIKYESNEEIDR-IYQNIKPFRSNISKRITKITGLEL 183 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + ++ ++ T N FD + Q ++ + Sbjct: 184 EDVVNM----PTFEDFSPQLMSFISCYTLVAHNAPFDLKFLLHQLNENNIELNQ------ 233 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 R+ D A T L + + L + N H A+ D T + ++H Sbjct: 234 -RIRVIDTLPLARRHF---ETPNHKLITLKDYLNLDN-NSHDALEDCLVTNKVYQYIKH 287 >UniRef50_C6P477 DNA polymerase III, epsilon subunit n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P477_9PROT Length = 235 Score = 132 bits (332), Expect = 7e-30, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 15/177 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +++VVD+ETTGL+ T + +G + V G + ++Q ++D + + ++G Sbjct: 42 RVVVVDVETTGLNLITDTLISIGAVAVVNGRIALGDSFSVVLKQQESSDKENILVHGISS 101 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 A ++L + + AFD T++ R Y +G Sbjct: 102 TAQRDGVDP----VEALLTFLEYLGKSRLIAFHVAFDETMIRRAMRQY--------LGLS 149 Query: 123 WHHRLADLAAYAAGKLNIDPTELEG-LDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H DL AY LN E LD R + + RH+A+ DA ATA F + Sbjct: 150 FKHEWLDL-AYVMPALNRSLMENHRVLDDWIGRFNIHIEARHNALADALATAQLFQI 205 >UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB51_MYXXD Length = 219 Score = 132 bits (332), Expect = 7e-30, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 67/180 (37%), Gaps = 13/180 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTG---ESLYFVPHITVEQLAAADPKAMEING 59 + L VDLETTGLD +EV +L VD + + +LA A P+A+ + G Sbjct: 29 RTLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVKPTRLADAHPEALAVCG 88 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 Y + V L G AG N +FD + + + Sbjct: 89 YSDEEWRDAL----PLQEVLATVTPLLAGTLVAGHNTSFDWGFLVESYRRSELALPSVDY 144 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ D A+ A L E L+A+A+R G+ H A+ DA L Sbjct: 145 HRL------DTASLAWPLLATGEVESLSLNALAKRFGLHRPTPHRAMADARCALEVARCL 198 >UniRef50_B5YGW1 DNA polymerase III PolC-type, putative n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGW1_THEYD Length = 225 Score = 132 bits (332), Expect = 8e-30, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 14/181 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGY 60 K+ +V+D E TGLD + +G + + L + KA+ I+ Sbjct: 17 NKEFVVIDTELTGLDEKNDSIISIGAITMRERSILIGDIFYRILNPQCKPKDKAVLIHKL 76 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPL 117 L + + E D+++ G D + ++ + + Sbjct: 77 TSTELEQ----CPDIKLILKEFIDFIKNRPIVGHFIEIDIKFLRKETSKWLNTGFTPEAI 132 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 +++ + K + L +AE + V H A+ DA TA F Sbjct: 133 DTYIIFNWLIEREIISKKFK------GAKSLPEIAEAFDIKVDMLHDALYDAFITAQIFQ 186 Query: 178 M 178 Sbjct: 187 R 187 >UniRef50_C2D7T6 3'-5' exonuclease and CRISPR-associated Cas2 family protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7T6_9ACTN Length = 337 Score = 132 bits (332), Expect = 8e-30, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 66/176 (37%), Gaps = 14/176 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ +++D+ET+GL+ +E+G + + + + I + L P ++ G + Sbjct: 168 KKFVILDIETSGLNETDDKIIEIGAIRICDKQVDDYQCLIKRDSL-NLSPAITQLTGLTD 226 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + A ++ ++ G N AFD + + + + + Sbjct: 227 IELANRGVNPNL---ALNGLKQFIGHLPVLGYNIAFDMRFINNELRSMNEEL-------L 276 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + K+ + E LD V + G+ H A+GDA A Sbjct: 277 DNREIDVMRFIKKEKMFL---ESYALDNVLKVYGISATVPHRALGDAKLIAKLALK 329 >UniRef50_Q9K6I8 BH3741 protein n=1 Tax=Bacillus halodurans RepID=Q9K6I8_BACHD Length = 219 Score = 132 bits (332), Expect = 8e-30, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 12/183 (6%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V D ETTG +EV ++V+ E F V + E+ G E Sbjct: 27 FTVFDTETTGFAVGAGDRLIEVAAVHVEGLEVTDFTFQTYVNPERNIPAEIEELTGISED 86 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ + + G +FD T++ ++ Y + + Sbjct: 87 KVKNAPASLPAI-ESFFRFVEQSGSAAWVGHYASFDVTVLKKELQRYQFSLNVPLLFD-- 143 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 DL Y + ++ E+ A++ G + RH A+GDA TA F L Sbjct: 144 ---TLDLIGYISPSKDMRDLEVY-----AKQFGTYIYERHQALGDALTTAHLFCELLRHL 195 Query: 184 AAH 186 A Sbjct: 196 EAR 198 >UniRef50_C9Z7X4 Putative exonuclease n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z7X4_STRSW Length = 215 Score = 132 bits (332), Expect = 8e-30, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 67/187 (35%), Gaps = 17/187 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGY 60 + + V+DLETTGLD + VG + V G ++ + A +++++G Sbjct: 20 SAEYCVIDLETTGLDLRRDEIISVGAVPVREGRIDLGDSFYSLVRPRCAVSVASIKVHGL 79 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A + L G + ++R + T Sbjct: 80 RP----GDLDSAPDPATVGQALSPRLSGRVVVAHAAWIERAFLSRTQSTVGWSQVRA--- 132 Query: 121 RVWHHRLADLAAYAAG---KLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + D AA A D L+ +A RLG+PV H A+GDA TA F Sbjct: 133 ------VVDTAALARATGCWAGHDSGREPPLELLARRLGLPVCTPHHALGDALTTATVFL 186 Query: 178 MLRHTAA 184 L A Sbjct: 187 ALAARAE 193 >UniRef50_D0WQJ6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQJ6_9ACTO Length = 206 Score = 132 bits (332), Expect = 9e-30, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 57/174 (32%), Gaps = 15/174 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL VE+G++ +D V L A+ ++G + Sbjct: 3 YAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSLVNPLRGM--GAVFVHGLTDAD 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A +++ G N FD + Sbjct: 61 VADA----PTLADLLPQIRGLFSGRALVAHNATFDVGFLNASFARAGYGMHV-------- 108 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R A + K+ + P GL A AER GV RH A+ DA A Sbjct: 109 PREATVCTMELSKIYLPP-GRHGLAAAAERAGVATAKRHRALADAHTAAGLLRH 161 >UniRef50_B0UN90 Exonuclease RNase T and DNA polymerase III n=3 Tax=Rhizobiales RepID=B0UN90_METS4 Length = 223 Score = 131 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 63/183 (34%), Gaps = 15/183 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYERG 64 + +D ETTGLD V V + + L TV + P+A++++ Sbjct: 32 VALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESLRATVRSDRPSSPEAIKVHRL---- 87 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLTVGR 121 L E + + ++ G G FD ++ + +P + V Sbjct: 88 LNAEIREAEPLDAVLPALLRFIGGRPIVGYYTEFDVRMLDKSVRRQFGIRLPNPRIDVSS 147 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++H A + E LG+P + +H A DA TA + LR Sbjct: 148 LYH-------AAKYRDAPDYVKIDLSFARILEDLGLPALPQHDAFNDALMTAMIYLQLRD 200 Query: 182 TAA 184 A Sbjct: 201 LLA 203 >UniRef50_A3HVK4 DNA polymerase III, epsilon subunit n=1 Tax=Algoriphagus sp. PR1 RepID=A3HVK4_9SPHI Length = 223 Score = 131 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 9/166 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ETTGL+ + G + ++ + + D K + ++G Sbjct: 39 FVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWYLKSSKKDFKTIPVHGLIGNE 98 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF-SPLTVGRVW 123 EA+ +Q A V ++ N G + FD ++ + + + + + Sbjct: 99 ---EAVPLEQFA---KRVLEYFENNILVGHHLGFDLEMLEKALKPFGLDKIQNKCIDTMS 152 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 D A N + LD++ +R + +RH+A GDA Sbjct: 153 LAIRLDHGLMA--DRNYIDFKDYSLDSLCQRYDIKTDDRHTAGGDA 196 >UniRef50_A5UUT9 DNA polymerase III, epsilon subunit n=4 Tax=Chloroflexaceae RepID=A5UUT9_ROSS1 Length = 233 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 14/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL---AAADPKAMEINGY 60 V+D+ETTGL+ + +GL+++D G T+ + A +P+A+ ++G Sbjct: 37 PYSVIDVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGL 96 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPL 117 + + + + L G D + + + Sbjct: 97 LPQDVEQA----PPPGDVLPVLLRRLTGRVLVVHVADIDIGFLRQALRRLYQVDPRGPAI 152 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 R+ H + D L A+AE G+PV H+A+ DA TA F Sbjct: 153 DTARLAWHFQRNQRLIDGA----DQEPALQLRALAESAGLPVYAEHNALNDALTTAQVFL 208 Query: 178 M 178 Sbjct: 209 A 209 >UniRef50_B5YGV6 DNA polymerase III alpha subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGV6_THEYD Length = 230 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 53/187 (28%), Gaps = 15/187 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 +VVD E TGL+ + +G + + +++ I+ Sbjct: 23 DFVVVDTELTGLNEFRDNIIAIGAIKMKGRTIKIGDIFYRTVSPSTKKFRKESIMIHEIT 82 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLT 118 L + Q E + + G D T + ++ + Sbjct: 83 PSELEK----CPQIEPILREFIKFSKNCLVVGHCVDIDLTFLKKEIRNNLREIFEPFSID 138 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 ++ + L D + L+ +A L + H A+ DA TA F Sbjct: 139 TLLIYKWLI------KKEILPSDFSNKNSLEDIALSLDIEPKELHDALSDAFITAQIFQR 192 Query: 179 LRHTAAA 185 L Sbjct: 193 LLAYLGE 199 >UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2L6_SALRD Length = 538 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 15/161 (9%) Query: 24 EVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQ 83 E+G + V G + + V + + ++ G ++ + + Sbjct: 2 EIGAVKVRDGSVVDRFQQL-VNPQQSVPGRITKMTGITTGMVFEA----PPADEVLPDYR 56 Query: 84 DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPT 143 +L N +FD + + + P L + + Sbjct: 57 AFLGDGILVAHNVSFDGSFLDAELQRMGDETLPNE----------TLCTVRLARRLLPGL 106 Query: 144 ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + +GL +A+ + V RH A+GDA AT+ A Sbjct: 107 DSKGLSRLAQFYDIDVEGRHRALGDAEATSVVLRRFVSQLA 147 >UniRef50_B7GKX3 Exonuclease n=2 Tax=Bacillaceae RepID=B7GKX3_ANOFW Length = 222 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 58/182 (31%), Gaps = 19/182 (10%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHIT-VEQLAAADPKAMEINGYYE 62 V D ETTG T +E+G + V + T V P +E+ E Sbjct: 29 FTVFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPNRDLPPVIVELTNITE 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGN---TFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + A + ++ F G +FD ++ + M F Sbjct: 89 E----KVKHAPTAIEALQQFFQFVEQKQSVCFVGHYISFDLFVLKHELRREKMKFR---- 140 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 D ++ L+ A+ G + RHSAIGDA TA+ F L Sbjct: 141 ----KPTFIDTLDLIG--FIAPSYDMRDLERYAQAFGTRMYERHSAIGDALTTAYLFVEL 194 Query: 180 RH 181 Sbjct: 195 LQ 196 >UniRef50_B8G6F9 DNA polymerase III, epsilon subunit n=3 Tax=Chloroflexus RepID=B8G6F9_CHLAD Length = 280 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 17/182 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 L+ D+ETTGLD + E+ +L + + + DP+A ++NG Sbjct: 14 PLVFFDVETTGLDLQNGHRICELAMLR-REHRQITGQINTLINPERELDPQASQVNGIRA 72 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + A +V + N FD + + + P Sbjct: 73 EDLQ----SAPRFAELTVQVVQLSQQAVRVAHNLPFDESFLNMELARAGYPPLTG----- 123 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + L A+A G+P H A+ D FD L Sbjct: 124 -----PALDTLELARRLGIRRGSLSLGALATSFGLPTPT-HRAMDDVLTLHALFDRLVAK 177 Query: 183 AA 184 A Sbjct: 178 LA 179 >UniRef50_D0IFC0 DNA polymerase III epsilon subunit n=1 Tax=Vibrio sp. RC586 RepID=D0IFC0_9VIBR Length = 233 Score = 130 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 9/179 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 L+ +D ETTGL+ + +GL+ +T L + V+ + ++ I+G Sbjct: 43 PLVALDFETTGLNAQQDDILSIGLVPFNTQRIALKQARYWLVKPSRPLEEDSVVIHGITH 102 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVAR---QRVTYSMPFSPLTV 119 L Q+ V + E+ D LRG + + + + ++ F + Sbjct: 103 TELKHA----QEPEVVFSELFDALRGKIVVAHFRHIEREFLRQTTLKLWEEAVEFPIIDT 158 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + +L P L R G+P + H A+ DA ATA F Sbjct: 159 LEIELSVQNTQRSL-WQRLLRSPIPSVRLGQSRLRYGLPAYSPHQALTDAIATAELFQA 216 >UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Corynebacterium RepID=C2BLZ4_9CORY Length = 221 Score = 130 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 12/183 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG + +E+ + D+ + H + A K I+G Sbjct: 21 FAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTLLNPDGKAI-KNSHIHGITNDM 79 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + +T + +G+ ++ G N FDS ++ + + + Sbjct: 80 V----VTAPTFSEVYGDFTSYIDGMQLFAHNAPFDSKMIVAEVDRMTGGDNDGDEFFP-- 133 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 D A L+ P L A+ +RLG+ + H+A+ DA +T L Sbjct: 134 --FIDTIDLAKQMLDCGP---YNLPALLDRLGLDNPDAHAAVADATSTVNMLHALFGFKR 188 Query: 185 AHL 187 + Sbjct: 189 GEI 191 >UniRef50_B6FWT9 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FWT9_9CLOT Length = 276 Score = 130 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 55/188 (29%), Gaps = 19/188 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV DLETTGL+ E+ + D E + + H V K ++ G Sbjct: 96 YIVFDLETTGLEAHKEAITEIAAIKFDYDEPVEY-FHTYVNPKKKIREKITDLTGITNEM 154 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP---FSPLTVGR 121 + + ++ T N +FD + + + Sbjct: 155 VA----SAPPIEYVLPNFLKFIDKYTLISHNVSFDMSFILDPMYNLGYKKPGNKAIDTLA 210 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV----NRHSAIGDAAATAFCFD 177 + + D L+ + +LG+P+ H+A+ D F + Sbjct: 211 LARRFMKDEDTGKR-------LSSYKLEDLKYQLGLPLDVYDIKSHNALYDTKVAYFLYK 263 Query: 178 MLRHTAAA 185 R Sbjct: 264 NCRELKEE 271 >UniRef50_D2EP63 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG (Fragment) n=4 Tax=Streptococcus RepID=D2EP63_9STRE Length = 157 Score = 130 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 17/170 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVDLE T A ++VG++ ++ GE + V D E+ G Sbjct: 5 NDRYVVVDLEATSTG-SKAKIIQVGIVVIENGEIINQYA-TDVNPHEPLDSHIKELTGLT 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 +R L + + G++ + ++ F N FD+ ++A Sbjct: 63 DRRLAAA----PEFSQVAGKIFELVKDGIFVAHNVQFDANLLAEFLFFEGYEL------- 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 R + ++ E L + + LG+ + + H+A+ DA A Sbjct: 112 ----RTPRVDTVELAQVLYPQFEKYNLGILCQELGIELEHAHTALSDAQA 157 >UniRef50_A9AZA6 DNA polymerase III, epsilon subunit n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AZA6_HERA2 Length = 282 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 53/181 (29%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ D+E+TGLD E+ + + E + + V DP A +NG Sbjct: 25 PFVLFDMESTGLDVQIGHRICEMAAMRIQGREIIDRCEFL-VNPQREIDPAAFAVNGISA 83 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + W +V N FD + + +P + Sbjct: 84 EMVANA----PSFGEIWPKVNKLFHEAVLVAHNAYFDIGFLTSELSRIDLP-------PL 132 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + LA L ++A LG H A+ D A F+ L Sbjct: 133 ETPVIDTLAL----ARRYITARRYNLTSLATNLG-EKAPSHRAMSDVVALRPVFEHLLDI 187 Query: 183 A 183 Sbjct: 188 L 188 >UniRef50_A9FIM8 Exonuclease n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIM8_SORC5 Length = 298 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 48/183 (26%), Gaps = 17/183 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + L+ +DLE TGL ++ +EV + ++ + ++G Sbjct: 30 SAPLVFLDLEMTGLRPESDRVIEVCAERTRGDACEDAIT--SLVRPEPGVFGNAHVHGID 87 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R L A + G A+D + + Sbjct: 88 PRELAGA----PTFAELCDRIDQVTEGAVLVAHAAAWDVAFLEAELARAGRARRL----- 138 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D + + L ++ LGV H A D A F + Sbjct: 139 ---PHYLDTLVLSRRAFALP---SHSLASLCRELGVHRERAHRAEDDVHALRAVFRKIVE 192 Query: 182 TAA 184 A Sbjct: 193 VLA 195 >UniRef50_P47729 DNA polymerase III polC-type n=1 Tax=Mycoplasma pulmonis RepID=DPO3_MYCPU Length = 1435 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 18/190 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++ +V D+ETTGL ++ G + G + ++ + D ++ G Sbjct: 400 LDQEYVVYDIETTGLSPMLNELIQFGASVIKNGRIIETHHFF-IKPKSKLDSFTTKLTGI 458 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + A ++ + N AFD + ++ + ++ F Sbjct: 459 TQEHLEKGY----ELQEALEKISSIFKARIMVAHNAAFDHNFLKQKFIDNNIEFEE---- 510 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCF-D 177 + + K+ L VA +L V H A D++ F Sbjct: 511 ------MISIDTLNLAKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFIL 564 Query: 178 MLRHTAAAHL 187 + H + Sbjct: 565 QMSHLKEKGI 574 >UniRef50_C9RIV2 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIV2_FIBSS Length = 188 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 16/163 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLETTG + +E+G+ +D E + H V+ P E+ G + Sbjct: 3 KFAVVDLETTGGHGEDNRIMEIGIALMDGSEIVE-TYHALVDPGKPITPFVRELTGITDE 61 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + Q V V L+ F N FD + + + F+P Sbjct: 62 MVSG----QPQFGVIAEHVAALLQDRIFVAHNVQFDCKYMTAELKRCCIKFNP------- 110 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAI 166 A L + L + E LG+P N H A+ Sbjct: 111 ----ARLCTVKLSRRVFPGQPSYSLHKLTESLGLPDFNHHRAL 149 >UniRef50_Q30Q47 Exonuclease n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30Q47_SULDN Length = 266 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 19/179 (10%) Query: 1 MAK-QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M++ +VD+ET G + +E+ L V G + ++ + +P EI G Sbjct: 66 MSESTFCIVDIETNGSKIEKHQIIEIAALKVKNGLVV--ERFESLVECHEINPHITEITG 123 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E + + + +L F + FD ++ +P Sbjct: 124 IST----NETIDAPNLKKVMYDFRTFLGDAVFIAHDVKFDYKFISLSMQKIGLP------ 173 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFD 177 + + L + + + I + L + + P H A+ D T F Sbjct: 174 -PLLNRSL---CSLSLAERTI-ESYRYALSYLNTIFNLHPEATHHRAMSDVITTYELFK 227 >UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4FB13_9ACTN Length = 977 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 +IV+D ETTGL + + +E+ + E + F + L + ++ Sbjct: 46 DVIVLDTETTGLSHRDSELIEIAAARLRGREIVDRFDTFVKPSGLIP--EEITKLTSITN 103 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + +++ G N AFD + + V + Sbjct: 104 VDVAHA----PSAVDAVASLAEFVGGCPVVAHNAAFDRGFIEQ-------VPGGADVSDI 152 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 W + + A ++ + L +AE G H A D A + +L Sbjct: 153 W------IDSLALSRIALPRLASHKLAVMAELFGCE-SVSHRANADVEALCGVWRILLCG 205 Query: 183 AA 184 A Sbjct: 206 LA 207 >UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4L7K7_STAHJ Length = 219 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 19/183 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M I +D ET + VG++ V E + + V +E++G Sbjct: 37 MGNAFIALDFET--ANGKRTSICSVGMVKVVNNEIVE-SFYTLVNPFDYFSQTNIEVHGI 93 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + ++ N AFD ++ + ++ Sbjct: 94 TPE----DVIDAPSFEYVFPYMMQFIDKLPVVAHNAAFDMNVLHQSLKQLNIE------- 142 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC-FDML 179 + +Y K ID GL + + + H A+ DA A A F +L Sbjct: 143 ---TPSMIYFCSYQLAKRTIDAY-RYGLKHLMKHYKLDFHGHHDALNDAKACAMITFRLL 198 Query: 180 RHT 182 +H Sbjct: 199 KHY 201 >UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 Tax=Haliangium ochraceum DSM 14365 RepID=D0LN23_HALO1 Length = 180 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 66/181 (36%), Gaps = 13/181 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDT---GESLYFVPHITVEQLAAADPKAMEING 59 + L+ +D ETTGLD + +E+ + V E V + E+L ADP+A+E+NG Sbjct: 2 QPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNG 61 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 Y R A E+ L G AG N AFD + L Sbjct: 62 YRRRAWADAV----SLGDAMAELAPMLEGAVLAGHNVAFDRRFLEAAWDCVGHRPENLD- 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 H D AA A L + L V LGV H A D A+ L Sbjct: 117 -----HHALDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDVRASLGVAQRL 171 Query: 180 R 180 Sbjct: 172 L 172 >UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium RepID=C8W8J2_ATOPD Length = 978 Score = 129 bits (326), Expect = 4e-29, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 19/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++V+D ETTGL + +E+ + E + V+ + + Sbjct: 15 LEDDIVVLDTETTGLSFKKCSLIEISAAKLSGREIIERFQTF-VDPGCPIPEEITTLTSI 73 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A + +++ G N FD T + R +V Sbjct: 74 TDE----DVKGAPSAKEAVAALAEFVGGLPVLAHNATFDRTFIER-------VPGGTSVS 122 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 W + + ++ + L ++AE G + H A D A + +L Sbjct: 123 DTW------IDTLSLSRIALPRLSSHKLSSMAEAFG-TMKVTHRASDDVDALCGMWRILL 175 >UniRef50_C9R9F3 DNA-directed DNA polymerase n=1 Tax=Ammonifex degensii KC4 RepID=C9R9F3_AMMDK Length = 233 Score = 129 bits (326), Expect = 4e-29, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 60/181 (33%), Gaps = 16/181 (8%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + DLETTGL + +G + + E LY V P ++ G Sbjct: 46 EFVAFDLETTGLKPGAGDEIIALGAVRLRGNELLYPAFDQLVRPGRRVPPLVEKLTGIS- 104 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 A +L G N AFD + + + R+ Sbjct: 105 ---SGLLRYAPPLASVLPFFLGYLSRGFPLGFNVAFDLAFLNQALKPHG---------RL 152 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D+ + + E +D +A L V + RH+A+GDA A + LR Sbjct: 153 SEQAVLDV--WTVARALDARCEHATMDEIASFLKVNLEGRHTALGDALIHARMWLKLRER 210 Query: 183 A 183 Sbjct: 211 L 211 >UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales RepID=A8VXY5_9BACI Length = 935 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 22/190 (11%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYY 61 + +++DLETTG+ YD +++ ++ E L F +I ++ A ++ + G Sbjct: 3 RYVILDLETTGVAYDKGDRIIQIAYQVLEDQEVLKRFSTYINYDKPVPAFIQS--LTGIS 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L E+ L F N FD + V Sbjct: 61 GEHLKNA----PLFEEVAPEILSDLEEAYFVAHNVEFDLKFLNESLEDAGYASFQGPV-- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA----FCFD 177 + ++ + + L +A+ + H A D AT FD Sbjct: 115 --------IDTVELARICLPSEDSYRLSDLAKTVQATHTAPHQADSDVEATRALFNELFD 166 Query: 178 MLRHTAAAHL 187 + + L Sbjct: 167 KISGLPSETL 176 >UniRef50_Q2BJ82 DNA polymerase III subunit epsilon n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ82_9GAMM Length = 209 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 73/181 (40%), Gaps = 16/181 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +++ +D ETT LD V +G + + + L I ++ + +++I+ E Sbjct: 32 EVVSLDCETTSLDVKQGEIVSIGAVKIKGRKVLSSDRLDIKLKPPKSLTGDSIKIHKIRE 91 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLTV 119 L A +V +++ G +D ++ + + +P + + Sbjct: 92 SDLAGGI----DIEDALEQVLEFVGNRPILGYYVNYDIRMLDKFIRPQFGFGLPNKAIEL 147 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 V+H + ++ D ++++L +P++ RH+AIGDA A + L Sbjct: 148 SHVYHDII--------KWKSVGGNVDLRFDTISKQLDIPMLERHTAIGDALTVALMYVRL 199 Query: 180 R 180 + Sbjct: 200 K 200 >UniRef50_A9HX18 Putative exonuclease n=1 Tax=Bordetella petrii DSM 12804 RepID=A9HX18_BORPD Length = 177 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 52/182 (28%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V DLETTGL + +E ++V ++ V P + G + Sbjct: 7 PFAVADLETTGLSTASCEILEFAAVHVGPDGAIEREFSQVVRTRGTVPPFITRLTGITQA 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + A A+ +L N +FD + +PF+ Sbjct: 67 EVDGHGIP---VAEAFSAFLAFLADAPVFFHNASFDCRFLQAAAEHTGLPFAN------- 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 A + L +A +G H A+ D +T R Sbjct: 117 ----ATHCTLQLARQAWPELPSHKLQVLARHVG-AADPTHRALADVRSTVAVALAARRKL 171 Query: 184 AA 185 A Sbjct: 172 AG 173 >UniRef50_A8VW12 S-adenosylmethionine decarboxylase related n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VW12_9BACI Length = 233 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 49/173 (28%), Gaps = 15/173 (8%) Query: 7 VVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 V DLETTG + +G + + E + V + G E Sbjct: 53 VFDLETTGFFPQKQDRILSIGGVKIKNNEITDDTFYSFVYYDQPISETIRHLTGIQEE-- 110 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + L A + + F + A + + + + Sbjct: 111 --DVLNAPAEADVLTRFFAFAEDDLFIAHHAAHEKGFMQDALWR--------SFRATFQR 160 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 RL D KL D + L+A + RH A+ DA A + Sbjct: 161 RLIDTIFLT--KLQPDLRDTAELEACCRYFNIEPAGRHHALHDAKLAAELWIH 211 >UniRef50_D0Z0S6 DNA polymerase III epsilon subunit n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z0S6_LISDA Length = 237 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 12/180 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 + +V+D ETTG D + + VG + + + + P+ IN Sbjct: 51 EYLVLDFETTGFDPEQDDILSVGFVTISQQRIDLSTATELLIKDSQQKVKPETAIINHIT 110 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYSMPFSPLTVG 120 L + A + + ++G + + Y +P P+ Sbjct: 111 TEKLAHGV----ELDCAMAALFNAMKGKIMVAHGAMIEQRFLNHYLATRYQLPPLPI--- 163 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +W L + + + + L + +R G+P H A+ DA ATA +L+ Sbjct: 164 -IWLDTLTIEKSLSIHRQQL-KANDYRLAQIRQRHGLPAYPAHGAVIDAIATAELLLVLQ 221 >UniRef50_B4WXR6 Exonuclease superfamily n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXR6_9GAMM Length = 215 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 16/181 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 ++ +D ETTGLD TA V + + + G L + + + + I+ Sbjct: 45 VVAIDCETTGLDSRTAELVSIAAVVIKDGRVLSSQGLDVKLMPPDSLKEDTIRIHRLRPV 104 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLTVG 120 L + A + + G AFD ++ R + +P + + Sbjct: 105 DLEGG----ESVRDALDALLALVGNRPLVGWCVAFDVAMINRYLRPLMGFDLPNDIIELS 160 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ ++ D T DA+A L VPV+ RH+A GDA +A + L+ Sbjct: 161 ALYQKKM--------RYWQPDVTPDLRFDAMASALQVPVMERHTARGDAVTSALMYLQLQ 212 Query: 181 H 181 Sbjct: 213 K 213 >UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactobacillus RepID=D0R432_LACJF Length = 938 Score = 129 bits (325), Expect = 6e-29, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 18/170 (10%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 VVDLETTG + ++ G + + + + P+A+E + Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVVKTYSF--LINPHREIPQAVENLTHISN 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + +++ L F N FD + + V + + Sbjct: 68 EDVAKA----HDFSYYAPKIRKILENTIFVAHNVNFDLPFLNYELVNAGLE-------PL 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + + ++ L + RL + +N H A DA T Sbjct: 117 TGKAVDTVE---LAQIVFPTFPSYKLRDLTARLRIKHLNPHRADSDALVT 163 >UniRef50_C5F3P4 DNA polymerase III n=1 Tax=Lactobacillus paracasei subsp. paracasei 8700:2 RepID=C5F3P4_LACPA Length = 309 Score = 129 bits (324), Expect = 6e-29, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 21/179 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 IV+D+ETTGL + +++ L V + + + + + + P+ + I G Sbjct: 44 DYIVLDIETTGLSSVSDDIIQLSALKVKEDKVID--TFDSYVKPSTSIPENVVYITGITN 101 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + G G N FD + + + Sbjct: 102 STVENA----PEIFEIMPKFVSFTEGMPLVGHNIIRFDIPFIVNN----GFYYEDIEALD 153 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 W A K +P + L + E G+ H+A+ D T + LR Sbjct: 154 TWR--------LAKNKDFPEPLKNLKLPTLKEYFGISGS-SHNALDDCKTTITVYRHLR 203 >UniRef50_A6DK72 DNA polymerase III n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK72_9BACT Length = 210 Score = 129 bits (324), Expect = 6e-29, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 20/179 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV--EQLAAADPKAMEINGYY 61 +V+D E TGL + + + + G V ++ + + I+ Sbjct: 29 DYVVIDCEMTGLKPKQDKLLSIAAVKISQGRIQSQESFYRVIFQEKQKLRDETILIHRLN 88 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + Q A E D+ + G D + + P+ Sbjct: 89 HEQIS---TGSDQIA-VLKEFSDFCQNCIPVGHFFDIDLSFLN-----------PVMPLP 133 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L K L+ + + +P H+A+GDA +TA F + Sbjct: 134 FLYPHLDTRLLV---KTLQPCPSSIQLNELCDFYNLPSFEAHNALGDATSTACLFLKIL 189 >UniRef50_B3XRZ2 DNA polymerase III, epsilon subunit n=1 Tax=Lactobacillus reuteri 100-23 RepID=B3XRZ2_LACRE Length = 283 Score = 129 bits (324), Expect = 6e-29, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 22/184 (11%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VD ETTGL +++ + + + T+ ++ A +N E Sbjct: 15 YVSVDTETTGLYPMYGDKIIQLSAIKYIDDKLVD--TFDTLINPDGSNNNAKSVNNISES 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA-RQRVTYSMPFSPLTVGRV 122 L + G+ +++ + G N +FD + + + S + + ++ Sbjct: 73 SLKN----QPTFDEVIGDFVNFVEDLPWVGHNLSFDFSFLKSEELKIASFKKNSVDTLQI 128 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 +I + L +A++ + N H+++ DA A + LR Sbjct: 129 --------------ARSIYGNKGNKLQQLAKKFNIDYKNLHNSLYDAQIAASLYQHLRSV 174 Query: 183 AAAH 186 + Sbjct: 175 FQTN 178 >UniRef50_C9PT90 Putative uncharacterized protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PT90_9BACT Length = 900 Score = 129 bits (324), Expect = 7e-29, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 11/186 (5%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++++V D ETTGL+ V++ + + + + P + G Sbjct: 514 TEEIVVFDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFIKTERPIPAML---GDI 570 Query: 62 ERGLYREAL--TEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + E T A A + ++ + N FD I+ Y Sbjct: 571 PNPIVAELQRNTCLPAAQALQDFMQYVGDSVLLAHNADFDYNILRFNLQRYCPSIDLHAT 630 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + +L + L A+ E L + N H A D AT Sbjct: 631 HPTY------FDSLKIIRLLQPGLKQYKLKALLEVLHLEGTNSHLADEDVQATVSLVGYC 684 Query: 180 RHTAAA 185 R AA Sbjct: 685 RQKAAE 690 >UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma RepID=DPO3_MYCGE Length = 1451 Score = 128 bits (323), Expect = 8e-29, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 22/191 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D+ETTGL +E + + ++ EI + Sbjct: 415 TFVIFDIETTGLHGRYDDVIEFSARKIKNNSEIDHQQFF-LKIDKPIPKTITEITKITDE 473 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + +++++L N FD + Q Y++ + Sbjct: 474 MLEGGIDQQ----QGLEKIRNYLDDCVMVAHNGINFDLPFLQTQFEKYNIK-------PL 522 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCF---- 176 + + L L + +L + + H A D A F Sbjct: 523 TNPLIDTLC---LSWALNPLFSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVFFYFK 579 Query: 177 DMLRHTAAAHL 187 L+ L Sbjct: 580 KQLKEMGINTL 590 >UniRef50_B6BKX7 Exonuclease n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BKX7_9PROT Length = 272 Score = 128 bits (323), Expect = 9e-29, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 18/175 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VD+ET G D +E+G + V G + ++ + EI G Sbjct: 68 EFCIVDIETNGSKIDKHQIIEIGAVKVRDGVIID--KFESLVYCREINKHITEITGISVE 125 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 E + +L F + FD ++ + + + + Sbjct: 126 DTKNA----PNLKKVLYEFKSFLGNAIFVAHDVKFDYKFIS-------LSMQKIGLEPLL 174 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFD 177 + + + A + I + L + + L + P H A+ D T F Sbjct: 175 NRSI---CSLALAERTI-ESYRYALSYLNDSLHLNPNATHHRAMSDVITTYGLFM 225 >UniRef50_Q05FQ3 DNA polymerase III epsilon subunit n=1 Tax=Candidatus Carsonella ruddii PV RepID=Q05FQ3_CARRP Length = 181 Score = 128 bits (323), Expect = 9e-29, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 14/179 (7%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K++I +D+ETTGL + +E+G + V G V H A ++G Sbjct: 2 KRIIFLDVETTGLFVEHGDRIIEIGCVEVINGHLTGRVFHSYFNPEVKITQGAFNVHGIK 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L L + E ++ +T N FD + ++ + + Sbjct: 62 DDFL----LLKPMFYEKINEFIGFINNSTIIAHNAKFDINFINKEIYLTNFKIKKI---- 113 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG-VPVVNR-HSAIGDAAATAFCFDM 178 + L + + + L+ + + + R H A+ DA A Sbjct: 114 --QNYANILDSLLLFRKLYPR-KKNNLNDLCLKFNLIKNKKRIHGALNDAFLLAVLIIK 169 >UniRef50_A3QFI6 Exonuclease, RNase T and DNA polymerase III n=5 Tax=Shewanella RepID=A3QFI6_SHELP Length = 226 Score = 128 bits (323), Expect = 9e-29, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L+ +DLE TGL+ + +G++ + G+ + + Q+ + ++ I+G + Sbjct: 42 ELLAIDLEMTGLNASFDQILSIGVVPIRQGQLILSEAQHKLVQIEGSVGQSATIHGILDT 101 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E A G + D + +G Sbjct: 102 HLDAALTPE----QAMAWFLSVSEGMVLVAHHAPLDLAFLQSGLQ--------ACLGEKP 149 Query: 124 HHRLADLAAYAAGKLNIDPTEL----EGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 D +L L L R G+PV H+A+ DA A Sbjct: 150 RLLAIDTLLLEKQRLLRQQEHLQEGCLRLGRSRARYGLPVYAAHNALIDALACGELLLA 208 >UniRef50_C8P6J0 Putative uncharacterized protein n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P6J0_9LACO Length = 224 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 13/184 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +DLET+GL+ TA + +G + G + F + ++ + G + Sbjct: 54 DFVSLDLETSGLNPTTAQIISIGAVKRIAGHTTTFYRLVKLQSGKKLAGDIARLTGLNSQ 113 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E + A ++Q + + G N FD + + + + Sbjct: 114 QLATEGVA---VKEALIDLQSFAKKLPIVGYNLLFDERFLQTAVIRAGIVQ--------F 162 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 ++++ D+ Y + L + R G+ H+++ DA AT D L Sbjct: 163 NNKMVDVLPYVKTVDKF--CDNYHLATILTRYGIKNEQAHNSLADATATMKLVDKLIKIH 220 Query: 184 AAHL 187 + Sbjct: 221 GFRI 224 >UniRef50_C9ZG17 Putative DNA polymerase III, epsilon chain (EC 2.7.7.7) n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZG17_STRSW Length = 613 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 20/176 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVD--TGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VD+ET+GL + + +L +D ++ F + + DP + ++G Sbjct: 18 DWALVDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTLLNPD----CDPGPVHVHGLT 73 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L +V L N FD +A + R Sbjct: 74 ADRLAGA----PAFEEIAPQVGALLSSRVLVAHNAQFDYDFLAHEFAQ----------VR 119 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 W L A +L T L +A GV H A D + Sbjct: 120 SWAPVSRRLCTLALNRLVGPATPDLKLGTLAAHYGVRQEKAHDAQDDVRVLSGILR 175 >UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8CUQ0_OCEIH Length = 195 Score = 128 bits (322), Expect = 1e-28, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 18/175 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ET + VG++ ++ E + + + LA+ + I+G E Sbjct: 3 KFAAIDFET--ANEKRNSACSVGVVIMNDTEIID-EFYTLINPLASFRSGNVFIHGITEE 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A W + +L N +FD +++ + Y +P T Sbjct: 60 QVQEA----PTFAELWPTLSAYLEDTILIAHNASFDMSVLRQSLNKYDIPCPNYTS---- 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L +L E L VA G+ + N H A+ DA A+A F Sbjct: 112 ------LCTVKISRLIWPQLENHKLHTVANHHGIAL-NHHHAMDDARASAKIFLA 159 >UniRef50_A0L6G9 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G9_MAGSM Length = 230 Score = 127 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 14/179 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGYYE 62 + + +DLETTGLD + + + VG + V G + H V+ A + ++G + Sbjct: 43 KFLALDLETTGLDPNKSEILSVGFVPVYNGRVVLSGCAHYLVQPEGAISHASAVVHGITD 102 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL---TV 119 + +V V L+G+ + + + + + Sbjct: 103 DHAEAYG---EPLSVVLPRVLKALKGHVLLAHHCPIELNFIRKACQRLYGEMPLIPAVDT 159 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + L R +P H A+ DA A F Sbjct: 160 LVIERQIMDR-------RSGTYEPGALRLFTARTRYNLPRYAAHDALMDAIACGELFLA 211 >UniRef50_B2Q2X9 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q2X9_PROST Length = 234 Score = 127 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 14/178 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGY 60 +Q++ +DLETTGLD + + +G++ + + L H V + IN Sbjct: 49 TQQILSIDLETTGLDPEKDRILSIGMVTIADSKILLKSAQHYYVNDNEPVKAETAVINHI 108 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A +G A + +++ +P Sbjct: 109 TPEQLSDGV----SLPHAIASFLHEAKGKCILAHGSAIEHAFLSKALNIKELPLLWFDTL 164 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L ++ N L A+ R +P + H+A+ DA ATA F Sbjct: 165 NIEK----TLLSHKNINRN-----DFSLSALRSRYQLPDYDAHNALSDAIATAELFLA 213 >UniRef50_Q4A745 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A745_MYCS5 Length = 1451 Score = 127 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 20/187 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D+ETT L +E ++ + I ++ + Sbjct: 410 RYVVFDIETTSLSAYHGEIIEFAATIIENKAVVD-KVDIFIKSKEKLSHFTTRLTSITNE 468 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ + + A ++ D L N N FD + + +M T Sbjct: 469 MLDQKGI---ELKEALQKIYDVLNNNVAVAHNANFDYNFLIEKFDQNNMQAPKCTF---- 521 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCF----D 177 + + ++ + + L+ L V H A+ D A + Sbjct: 522 ------IDSLVVSRILFEHRDKHNLNEFCRNLSVNYDTEKAHRALYDTEVLADAWIEATL 575 Query: 178 MLRHTAA 184 L+ Sbjct: 576 KLKDIKQ 582 >UniRef50_Q89MS5 Blr4117 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89MS5_BRAJA Length = 223 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 15/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 + +V+D ETTGL+ T V + + + L V + + +A++I+ Sbjct: 31 EFVVIDCETTGLNVRTDNVVAIAAIKIRGNRILTSARFEAIVHPDSELEAEAIKIHRLRR 90 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPLTV 119 + ++ G FD ++ + V +P + V Sbjct: 91 SDVEA----SPIVWKVLPGFLHFIGPRPLIGYYVDFDIAMLDKYILPLVGIELPNERIEV 146 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+++ R G + A+ L +P + +H A DA TA F L Sbjct: 147 SRLYYER-------KYGNAPPNTEVDLSFAAILHDLCIPPLGQHDAFNDALMTAMMFLQL 199 Query: 180 RHT 182 R Sbjct: 200 RDL 202 >UniRef50_A9NGM6 DNA polymerase III, epsilon subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGM6_ACHLI Length = 227 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 57/180 (31%), Gaps = 15/180 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLL---NVDTGESLYFVPHITVEQLAAADPKAMEING 59 K+++V D ETTGL +EVG + + + ++Q + G Sbjct: 6 KKILVFDFETTGLTPKRDKVIEVGAVLLEKIGDTYEIVQEIDYLIKQQTPITDFISNLTG 65 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L R+ + E+ + D N AFD ++ TY + Sbjct: 66 ITNEMLARDGVEEEYAFRQLDNLID--EDTLLVAYNLAFDIGFLSALYQTYVAHNYKI-- 121 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + D A + L+ R + H A DA AT D L Sbjct: 122 ----QNDILDCMAVYKDRYPYP----HKLENAVARFELSNNQAHRASEDAKATFKVLDCL 173 >UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Streptococcus pneumoniae RepID=A5LFK6_STRPN Length = 307 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 60/180 (33%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M+ + +D+ET + +GL+ G + + + D + I+G Sbjct: 1 MSYSYVALDVET--ANDFRGSVCSIGLVKFKDGNIVD-TFYTLINPEEEFDDFNIFIHGI 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + D++ + FD + Y + F + Sbjct: 58 TPE----DVLDSPTFPEVRKSIVDFIGLDIVVAHFAQFDMGALKDVYQKYELDFDNIEY- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +Y K+ + L +A+ L + + + H+A+ DA A+ + L Sbjct: 113 ---------ICSYRLAKVALPGQLNYKLKRLAKNLNIEL-DHHNALSDARASGLILEYLL 162 >UniRef50_D0B757 DNA polymerase III n=38 Tax=Brucellaceae RepID=D0B757_BRUME Length = 224 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 66/182 (36%), Gaps = 16/182 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K++IV D ETTG+ + +G + ++ GE L ++ + + P+A ++G+ Sbjct: 14 KRVIVFDTETTGILP-YDRIITLGAVKIEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDN 72 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + A W N FD + R+ V + Sbjct: 73 WMTRYQDLFHELAAPIRKWF-SWADE--VVAHNAQFDMHYIQREFRKA-------EVDML 122 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDMLRH 181 + G + + LD ++G+ +RH A+ DA TA + + Sbjct: 123 DQPVYCTMD----GARRLWRGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQG 178 Query: 182 TA 183 A Sbjct: 179 VA 180 >UniRef50_Q2KXB5 Putative exonuclease n=4 Tax=Bordetella RepID=Q2KXB5_BORA1 Length = 193 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 47/164 (28%), Gaps = 15/164 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V DLETTGL +E + VDT + V + G ++ Sbjct: 28 FVVADLETTGLSAHACEILEFAAVRVDTEGQIASEYSQLVRINGRVPSFIARLTGISQQE 87 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + R+ A+ D++ N +FD+ + F Sbjct: 88 VIRDGKP---IDEAFRAFCDFVGTAPVFFHNASFDTRFLRATASRCGQAFDN-------- 136 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + L +AE LG H A+ D Sbjct: 137 ---DTHCTLLLARRAWPELRSHKLGMLAEHLG-AATPTHRALAD 176 >UniRef50_C5SA67 Exonuclease RNase T and DNA polymerase III n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SA67_CHRVI Length = 225 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 + + +DLETTGLD L + VG + + E + ++ + P+A I+ + Sbjct: 40 EYLAIDLETTGLDQRQDLILSVGYVVLHGPEIDLSTARHHLVRIDRSIPEASAVIHQITD 99 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 +A T ++ GEV L G + + +++ +P + Sbjct: 100 ----DQAATGRELEDVLGEVLAALTGRVMIAHHAGIEQGFLSQACQRCWGRGLPLRLVDT 155 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H L + L A+ R +P H+A+ DA + A F Sbjct: 156 QTLAHRTLER-------RQIPFKASDLRLHALTSRYNLPRHGAHNALSDALSAAELFLA 207 >UniRef50_A1S5S6 DNA polymerase III epsilon subunit-related 3'-5' exonuclease-like protein n=6 Tax=Shewanella RepID=A1S5S6_SHEAM Length = 228 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 14/174 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + ++ +DLE TGLD + +G++ +D G + ++ + ++ I+G Sbjct: 40 SAPMLALDLEMTGLDPGRDQILAIGVVPIDGGIIQLQGAESVLVEIQGSVGQSAVIHGIT 99 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLT 118 +R L+ A A + + G + D + SMP + Sbjct: 100 DRELHNAL----PLADAMNWLMQKMNGRILVAHHAPLDLAFIRANMSRSLGISMPMLAID 155 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + RL + + L A +R G+PV + H+A+ DA + Sbjct: 156 TLALERQRLLRI-------HDAIQEGSLRLGASRQRYGLPVYDAHNALTDALSC 202 >UniRef50_A6DBG1 DNA polymerase III subunit epsilon n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBG1_9PROT Length = 248 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 17/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + ++DLE +E+G + + + + + ++ G + Sbjct: 65 EYTILDLEVNNSKPKEGQIIEIGAVKLKNLVPIDEFSFLIYAK--DIPRYVTKVTGINNQ 122 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E + + +L + FD +A+Q +G + Sbjct: 123 MLKNEK----SQKEILEKFRLFLGDSVIVAHAADFDFNFLAKQFEKE-------DLGYLL 171 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L + GL + E L +P H A+GDA T F Sbjct: 172 NPHLCTITLAKKTLKA----NRYGLKYLKEELNLPEEIDHRALGDARTTTRVFLK 222 >UniRef50_Q041D1 DNA polymerase III, alpha subunit (Gram-positive type) n=20 Tax=Lactobacillus RepID=Q041D1_LACGA Length = 320 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 54/175 (30%), Gaps = 14/175 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 ++D+ETTGL E+G L V GE + F + ++NG E Sbjct: 33 YTLIDVETTGLSPYRDRITEMGGLKVRHGEVVATFSELVKFPDSNKVPTFITKLNGIDEA 92 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + L A + ++++ + G N FD V Y + V Sbjct: 93 AIEEKGLP---VQEAIKKYREFIGSDPIVGYNVNFDLNFVYDLAEKYHLTVLNNDYVDV- 148 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 Y + L R+ + H + D T FD Sbjct: 149 ---------YRLARSFYPQERHNRLLDCMHRMNIAENQEHRGLDDCLDTKKVFDE 194 >UniRef50_A1TZ29 DNA polymerase III, epsilon subunit n=3 Tax=Marinobacter RepID=A1TZ29_MARAV Length = 235 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 15/174 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +LIV+DLETTGL+ + +G + ++ G + + + + + I+G Sbjct: 40 RLIVLDLETTGLNASKDEVIAIGAVAIEGGVIHLNDQFDLILRRPELDIRETVLIHGIGP 99 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYSMPFSPLTVGR 121 L + T+ A + +W+ G+ + AFD + + Sbjct: 100 EALTQGYETQ----DALLYLLEWMNGDPILAYHSAFDQKFLEKTLKSQLGYTLP------ 149 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 H D+A + GLD A+ G+ + RH A DA TA Sbjct: 150 ---HVWMDVAELMPAFFPKATIKGRGLDDWADVFGLEISERHHAAADALVTAEL 200 >UniRef50_A0Y5B9 DNA polymerase III subunit epsilon n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y5B9_9GAMM Length = 234 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 55/183 (30%), Gaps = 10/183 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 + +D ETTGL+ V VGL+ H V+ ++ I+G Sbjct: 44 PFVALDFETTGLNSKADDIVSVGLVPFTLARIYCKQSKHWVVQPRRNLSESSIVIHGITH 103 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR---VTYSMPFSPLTV 119 + + D LR A + + + F + Sbjct: 104 NDVDNA----PDFDNIIAPLLDALRSKVIVVHYAAIERGFFNSALLLRLKEHIEFMVVDT 159 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM- 178 + L G++ L+ +R +P H A+ DA ATA Sbjct: 160 MELERRALKAKQGL-IGQIFNTKLGSLRLNDCRKRYSLPSYEGHHALTDALATAELLQAQ 218 Query: 179 LRH 181 LRH Sbjct: 219 LRH 221 >UniRef50_B6XU67 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XU67_9BIFI Length = 196 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 53/183 (28%), Gaps = 14/183 (7%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 IV+D ETTGL A +E+G + + E + + + + G + Sbjct: 21 DFIVIDTETTGLSVRKGARLIEIGAVKIHNDELVD-EFDQLINPFEHIPSRITGLTGIDD 79 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L L + E W N +FD + + R Sbjct: 80 GML----LGKPDVREVMDEFARWCSDTAVVMAHNASFDMSFLDNAVQLAYADRD----AR 131 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 HH + L + + + + + H A+ DA + +R Sbjct: 132 FAHHFVDTLD---LSRRLHPEKRTHKVSTLIVDYHIADMEEHRALSDAKQEWMLYRAMRD 188 Query: 182 TAA 184 A Sbjct: 189 EAE 191 >UniRef50_B6IRC5 3'-5' exonuclease n=2 Tax=Alphaproteobacteria RepID=B6IRC5_RHOCS Length = 212 Score = 126 bits (318), Expect = 3e-28, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 58/176 (32%), Gaps = 17/176 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 L+ +D ET + A +GL V+ G + ++ P + I+G Sbjct: 5 PPLLAIDFET--ANEQRASACSIGLCRVENGRVVRTAEYLIRPPELRFTPFTIAIHGIRP 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + W ++ L G N +FD +++ TY + Sbjct: 63 E----DVVDAPEFPDIWDAMRPELEGAVLLAHNASFDMSVLRAMLGTYGLAVPDHGY--- 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L A + E L+ +A + G+ + H A DA A A Sbjct: 116 -------LCTLVAARRAWPDLEKHRLNHLARQFGIELE-HHRAGSDARACAAIALR 163 >UniRef50_B7A7M2 DNA-directed DNA polymerase n=3 Tax=Thermus RepID=B7A7M2_THEAQ Length = 247 Score = 126 bits (318), Expect = 3e-28, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 21/187 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++V+DLETTGL +EV L+ ++ + F + P + G Sbjct: 73 VVVLDLETTGLAPGLNEIIEVALVRLEGERRVAFQSLARPRRP--PSPFIQRLTGITLEE 130 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + L G T N +FD + + + + Sbjct: 131 LEKA----PPLEEVLFRAYPLLEGATLVIQNASFDLGFLRPALGELGL--------ELEN 178 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA----FCFDMLR 180 + + K + GLDA++E L + H A+ D T + ML Sbjct: 179 PVVD---SIRLSKRAMRGLRRYGLDALSEVLELAPRAEHRALLDVERTLAVVYEVYYMLT 235 Query: 181 HTAAAHL 187 + L Sbjct: 236 SGSPRPL 242 >UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECT2_9ACTN Length = 964 Score = 126 bits (318), Expect = 3e-28, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 21/180 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 + +IV+D ETTGL +E+ + E + F + +QL A + E+ Sbjct: 35 EEDVIVLDTETTGLSVQDNELIEISAARLSGREVVDRFDTFVHPKQLIPA--EITELTSI 92 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + A + D++ G N FD + + + V Sbjct: 93 TNADVADA----PSAVEAVAALADFVGGCPVIAHNATFDRSFIES-------VKGGVNVS 141 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +W + + A ++ + L +A+ G H A D A + +L Sbjct: 142 DIW------IDSLALSRIALPRLASHKLSFMADLFGCD-SVSHRANADVDALCGVWRVLL 194 >UniRef50_B0ADG9 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ADG9_9CLOT Length = 174 Score = 126 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 52/185 (28%), Gaps = 30/185 (16%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNV-------DTGESLYFVPHITVEQLAAADPK-AM 55 + IVVDLETTGLD + G + + + + + P Sbjct: 8 KYIVVDLETTGLDPFS------GCEIIEIGITEIVNNKIGRN--YSRLVKPKGIIPSHIT 59 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 I + + + ++ T N FD + + Sbjct: 60 NITSITNDMVEDA----ESLETVLPNFRKYVGDTTIIAHNAKFDLKFLNYYLDLLGLEKI 115 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 ++ + L K + + L+ + + H A D ATA Sbjct: 116 --------NNHICTLEMLKRCK--SYKGKNKKLETACNYYNIVNEHAHRANSDTLATAKL 165 Query: 176 FDMLR 180 F ++ Sbjct: 166 FLTIK 170 >UniRef50_D1J1T2 Whole genome shotgun sequence of line PN40024, scaffold_60.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1J1T2_VITVI Length = 332 Score = 126 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 61/189 (32%), Gaps = 25/189 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +IV D ETTGL +E+GL ++ GE+ F + E++ ++G Sbjct: 127 TVIVFDTETTGLSRANDRIIEIGLQDLGGGENSTFQTLVNPERIVPNP----HVHGITTY 182 Query: 64 GLYREALTEQQTAVAWGEVQDWL------RGNTF-AGSNPA-FDSTIVARQRVTYSMPFS 115 + R + + ++ G N FD + + + Sbjct: 183 MVNR--PDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVP 240 Query: 116 PLTVGRVWHHRLADLAAYAAGKL---NIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAA 171 P + R D A + D L A+ E +P+V H + D Sbjct: 241 P-------NWRFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYT 293 Query: 172 TAFCFDMLR 180 + ML Sbjct: 294 LSQVLQMLT 302 >UniRef50_B5XKK7 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=33 Tax=Streptococcus RepID=B5XKK7_STRPZ Length = 833 Score = 126 bits (317), Expect = 4e-28, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 41/191 (21%) Query: 3 KQLIVVDLETTGLDYD------------TALPVEVGLLNVDTGESLYFVPHITVEQLAAA 50 ++ VVDLE TG + + + + + + Sbjct: 21 RKYAVVDLEATGAGPNASIIQVGIVIIQGNKII------------DSYETDVNPHE--SL 66 Query: 51 DPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY 110 D + + G ++ L + + + F N FD+ ++A Sbjct: 67 DEHIVHLTGITDKQLAKA----PDFGQVAHHIYQLIEDCIFVAHNVKFDANLLAEALFLE 122 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 + + + +L E L ++ +L + + H+AI DA Sbjct: 123 GYELT-----------IPRVDTVELAQLFFPRFEKYNLGHLSRQLNIDLAEAHTAIADAR 171 Query: 171 ATAFCFDMLRH 181 ATA F L Sbjct: 172 ATAILFLRLLQ 182 >UniRef50_C2JRY7 DNA polymerase III, epsilon subunit n=3 Tax=Enterococcus faecalis RepID=C2JRY7_ENTFA Length = 289 Score = 126 bits (317), Expect = 4e-28, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 21/181 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ I D+ETTGLD+ +++ G + + T+ + ++ G Sbjct: 6 KEFIAFDIETTGLDFHQDAVIQISAARYVDGIEVDY--FDTLVNSDYIPDEITKLTGITN 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 + + D+L G N +FD + Y++ Sbjct: 64 DQVLNA----PTLDEVMPYLFDYLGDTILVGHNIKSFDFPFLKA--KGYNIAEG------ 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 H + D +AA + L + G+ + H+A+ D +A F L Sbjct: 112 ---HEIYDTRYFAATRK--HGAVNNQLTTLKLLFGIDAI-SHNALNDVRISAIVFMELLK 165 Query: 182 T 182 Sbjct: 166 I 166 >UniRef50_Q2SPW2 Putative exonuclease n=2 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPW2_HAHCH Length = 192 Score = 126 bits (317), Expect = 5e-28, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 14/175 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +++V+D ETTGLD D A +E+ ++++ + F + P+A EI+G Sbjct: 14 SSRVVVLDTETTGLD-DQAEVIEISVMDMRGN--VLFDQLVRPLNPVP--PEAAEIHGVT 68 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + + G T N FD ++ + Y +P + Sbjct: 69 NEKLANK----PNFPDVYISLWRAIGGRTVVAYNADFDRRLLKQTCAAYRLPM----IEA 120 Query: 122 VWHHRLADLAAYAA-GKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 W + A Y + L A ++G+ V H A+ D T Sbjct: 121 NWQCAMNAYARYRKEPDAKRGGYRRQSLAKAAAQMGIEVYGAHRAVADCFTTVEV 175 >UniRef50_C1YLW5 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YLW5_NOCDA Length = 360 Score = 126 bits (317), Expect = 5e-28, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 20/186 (10%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + V+D+ETTGL+ + A VE+ ++ V ++ A E +G E Sbjct: 43 EYAVLDMETTGLEPREGARIVEIAVVRVRGDGKFVEEFSTLIDP--RAPVGGREFHGIGE 100 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + + L G G N F+ +A + V +P + + Sbjct: 101 ----GDTVGAPTAAQVVPRLTELLSGAVVVGHNLDFEQRFLASELVPAGLPTGQAGLCTL 156 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLRH 181 + E L + RL G +H+A+GDA A A + Sbjct: 157 ------------RALRSQVELERYSLPKASHRLSGDWPTGQHTALGDARACAKLLAEMLT 204 Query: 182 TAAAHL 187 A L Sbjct: 205 NAPGEL 210 >UniRef50_D0L8D9 Exonuclease RNase T and DNA polymerase III n=2 Tax=Corynebacterineae RepID=D0L8D9_GORB4 Length = 590 Score = 125 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 49/181 (27%), Gaps = 16/181 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++VD+ETTG + + + + +D + + P + I+ Sbjct: 10 WVLVDVETTGTNARRDRVLSLATMTLDYDGRVEDEYATLLNPGCDPGP--VHIHNLTRDR 67 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L+ V +Q L G T N FD + + + H Sbjct: 68 LHGA----PTFDVTMSPLQQMLAGRTMVAHNATFDHGFLVEEARRLG------ATLPIDH 117 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + L +A G+ H A D A F A Sbjct: 118 R----LCTVTLARRLQLDVPNVKLGTLATYWGIRQRAAHDARDDVRTLAEVFRRSLDLAE 173 Query: 185 A 185 Sbjct: 174 T 174 >UniRef50_C8NL81 DNA polymerase III, epsilon subunit n=7 Tax=Corynebacterium RepID=C8NL81_COREF Length = 227 Score = 125 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 17/190 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA--ADPKAMEINGYY 61 L+ VD+ETTGL D V +G + V V + + I+ Sbjct: 44 PLLAVDVETTGLKPDEHQIVSIGWVPVTGRVIELGGAGYRVIRGTEGFTVGSSAVIHRLT 103 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLT 118 + L A E+ L+G + ++ + Y + + Sbjct: 104 DDELAAGV----DLEDALVELLAALKGRVLLAHFAPMEQNFLSAACLKYFDAPLQLPVVD 159 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + ++ Y E L V R G+P + H A+ DA A A + Sbjct: 160 TFAIERRHMEKMSTY-------PRGEDLRLARVRTRYGLPQYSNHQALTDALACAELYLA 212 Query: 179 -LRHTAAAHL 187 +R A+ L Sbjct: 213 QIREVNASAL 222 >UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9J0_9ACTN Length = 1011 Score = 125 bits (316), Expect = 6e-28, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 21/178 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +D ETTGL + ++ + ++ G F + + + + ++ Y Sbjct: 52 DIVALDTETTGLSHKNDQLTQIAAVKLEEGSVADEFTTFVNPSRPIPHNIE--KLTNIY- 108 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + D++ + N +FD + + V Sbjct: 109 ---SVDVEHAPTPQTAVARLADFVELDPILAHNASFDRAFIEAA-------QNDTCVSDT 158 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 W + A ++ L +A G V H A D A A + + Sbjct: 159 W------IDTLALSRIAFPALTSHKLQDLAYIFGCESVT-HRANDDCTALAGVWHYIL 209 >UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BJL1_9LACT Length = 873 Score = 125 bits (315), Expect = 7e-28, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 62/193 (32%), Gaps = 22/193 (11%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M VVDLETTG ++ + G ++ GE + + + + ++ G Sbjct: 1 MKTSYAVVDLETTGPKFEEGGRIFQFGCSIIEQGEIVT-QVDLYINPETTIPYEIQQLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLT 118 +E + L G TF N +FD + + + +S Sbjct: 60 VD----KKEVKQAPYFDEVASTIFQLLEGKTFVAHNISFDYSYLVESFRELAGIEWSAPC 115 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD- 177 V ++ E L + + L +P HSA DA ATA F Sbjct: 116 V-----------DTVQLAQICYPTIESYRLQDLTQLLEIPHQQIHSAGSDAYATAQLFLN 164 Query: 178 ---MLRHTAAAHL 187 L A L Sbjct: 165 CLEELEQLPAPTL 177 >UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0X6_DEIDV Length = 1683 Score = 125 bits (315), Expect = 8e-28, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 13/183 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETT +D A +EV + V+ G + + E+ G + Sbjct: 9 YVILDTETTSVDRAEARLLEVAAVRVEDGRICD--TLQLLVSGERIPREVAELTGIRQEE 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRVW 123 L R+ +V ++ G N FD ++ R S+ F V Sbjct: 67 LDRDGQPLP---DVLKQVLAFMGDLPVVGHNAQGFDVPLLKRLCREQSLKFQVPFVFDTL 123 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLRHT 182 A A + P E GL+ + R G + H + D AAT+ + Sbjct: 124 L------LAPLAFAAVVPPVEGYGLEGLHARFCGDVHDDAHRTLADCAATSRLLAYMVER 177 Query: 183 AAA 185 A Sbjct: 178 LRA 180 >UniRef50_D0RQQ0 DNA polymerase III, epsilon subunit n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQQ0_9RICK Length = 223 Score = 125 bits (315), Expect = 8e-28, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 59/184 (32%), Gaps = 16/184 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTGL +E+ + ++ H+ + A + +G + L Sbjct: 4 VLLDTETTGLSSVNDKIIEIACIEIEDHIPTGEKFHVFLNPEMEISQGAYDTHGISKEFL 63 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + ++ G N FD + ++ ++ Sbjct: 64 KNK----PKFNDVAKDFTKFIDGKKLVIHNAEFDLAFLNKELKEVGEK-------QISKD 112 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHTA 183 + D A K P LDA+ +R + R HSA+ D A + L Sbjct: 113 NIVDTLNIAREKF---PGAQNSLDALCKRFKIDNSRRQKHSALLDCELLAKVYIELFEKK 169 Query: 184 AAHL 187 Sbjct: 170 EPTF 173 >UniRef50_B0G161 DNA polymerase III, epsilon subunit n=1 Tax=Dictyostelium discoideum RepID=B0G161_DICDI Length = 483 Score = 125 bits (314), Expect = 9e-28, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 72/180 (40%), Gaps = 18/180 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++I DLET+G+ + +E+G + + G + + A P + +I+ Sbjct: 300 RVICFDLETSGVT-SSDTIIEIGAVELIDGCRTGVIFQSYAQPKAQIHPVSEQIHQLTSL 358 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ + DW+ + N AFD I+ ++ + Y++PF+ + Sbjct: 359 QL----MSAPPIEIILASFMDWVGNSPLVAHNLAFDKRILIQELIRYNIPFN------ID 408 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP---VVNRHSAIGDAAATAFCFDMLR 180 H + + I LD+++++L + + H A+ D+ A + L Sbjct: 409 HICFCTMKYFKK----IYNGLNYSLDSISQKLKINKLLLRKTHGALIDSEILAIIYTHLL 464 >UniRef50_D2ATQ8 DNA polymerase III epsilon subunit and related 3'-5' exonuclease-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ATQ8_STRRD Length = 407 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 51/160 (31%), Gaps = 16/160 (10%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+DLETTGL +E+G++++D + V P+ I+G Sbjct: 10 YAVIDLETTGLRPSWNDRVIEIGIVHLDLSGEVTGEWATLVNPGRDLGPQ--HIHGIT-- 65 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + G V + L G A N FD+ ++ + + Sbjct: 66 --AADIRHAPAFGEIAGAVAERLDGRVVAAHNLPFDAGFLSHEFGRLGLDTPLDHT---- 119 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 A + A + L A R GV + H Sbjct: 120 ----AGVCTMAWSAQFLPGAPR-SLAACCARAGVSLNGHH 154 >UniRef50_A5FFY1 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FFY1_FLAJ1 Length = 198 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 13/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+ ET+GL+ + + + +G +V + V NG Sbjct: 29 KFVVLSTETSGLNPNKDVILSLGAFSVIDDSIIIKENFEAVLLQYKFLED----NGLSNE 84 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +T+ A A ++L G + FD ++ L GR+ Sbjct: 85 FIIESKMTKMPEAEALEAFINFLGNAVLVGHHINFDIEMLNAALER-------LDCGRLK 137 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L Y KL + L+ + E +P +R+S+ DA F L+ Sbjct: 138 NEALDIDVMYR--KLTDINDKQFSLNDLCEIYKIPKSDRNSSAEDAYKIGLLFLKLKSRL 195 Query: 184 A 184 Sbjct: 196 G 196 >UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRZ3_METLZ Length = 228 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 13/176 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++VD ETTGL+ E+ + D G +I++ E+ G Sbjct: 2 LIVDTETTGLNPKIDRITELAAIKFDKYGNKSVMDEYISLPNDICYPENVQEMTGITPEI 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E++ A + + N FD + + F Sbjct: 62 LELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRHRYVFPNG------- 114 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-VVNRHSAIGDAAATAFCFDML 179 + D + L G+ V N H AI D A FD + Sbjct: 115 WGVIDTLTVFRDRKPQP----HRLSDAISYYGLDGVKNSHRAIDDVVALCAVFDAM 166 >UniRef50_B4WSD0 Exonuclease family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSD0_9SYNE Length = 273 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 51/175 (29%), Gaps = 13/175 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A L VVD+ETTG A +EV +L+ + L + I G Sbjct: 28 ASPLTVVDVETTGALGHNARVIEVSVLHASLADGLEHQESYLINPQVKIPEYITRITGIT 87 Query: 62 ERGLYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W + Q L F N FD + + + + F Sbjct: 88 PEMV----YSSPPPEEIWPKCQPLLEGDRVFTAHNLDFDYSFLRTEYKRLGIRF------ 137 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + L L ++ + L + + + H A D A Sbjct: 138 --YKPPLQKLCTVILSRMLLADLPSRSLPNLIKHFNFDIDTSHRAEADTKACWLL 190 >UniRef50_Q47ME2 Exonuclease n=1 Tax=Thermobifida fusca YX RepID=Q47ME2_THEFY Length = 313 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 20/186 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + VVD+ETTGL + A E+ ++ + ++ V+ + E +G Sbjct: 30 EYAVVDVETTGLRPEGGARVCEIAVVRMRGDGTVLREFTTLVDPRIKVTGQ--EFHGI-- 85 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + A E+ G G N F++ + + V +P Sbjct: 86 --AQGDVVGAPRAAELVAELCALFSGAVVVGHNLDFENAFLTSEFVPAGLPDG------- 136 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-VVNRHSAIGDAAATAFCFDMLRH 181 L L + + E L + LG +H+A+GDA A A L H Sbjct: 137 ----LPGLCTLRTLRSQVH-LERYSLARASHALGGDWPTGQHTALGDARACAQLLAELLH 191 Query: 182 TAAAHL 187 A L Sbjct: 192 NAPGPL 197 >UniRef50_A3Q8X5 Exonuclease, RNase T and DNA polymerase III n=6 Tax=Gammaproteobacteria RepID=A3Q8X5_SHELP Length = 239 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 8/179 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 +L+ +D ETTGL+ D V +G + L H TV +++ I+G Sbjct: 48 ELLAMDFETTGLNVDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPREQLAEESVIIHGITH 107 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLTV 119 + L + + +V + + G A + + R + + F + Sbjct: 108 SDI----LDAPDLSAIFEQVLEQMAGKIMVVHYQAIERLFLERALIRRIHQGIEFPLIDT 163 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + +L D L R G+P H+A+ DA ATA Sbjct: 164 MALESEIQKRQHGGLLQRLKGDKPGSVRLGQSRSRYGLPSYPPHNALTDAIATAELLQA 222 >UniRef50_A4U4S6 DNA polymerase III epsilon chain-like protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U4S6_9PROT Length = 619 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 64/179 (35%), Gaps = 18/179 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGYY 61 + D ETTGL D ++VG + + G L + + ++M +G Sbjct: 429 TFVAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDPGIPIPAQSMAYHGIS 488 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + AV + + + AG N AFD + + + Sbjct: 489 NDMVKGK----PPLAVVLPQFAAFAGASALAGHNVAFDLKFLHAAQGETGIALR------ 538 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + A +DP L+AVA RLGVP + SA+ DA TA L Sbjct: 539 --QPVLDTMILAAL----LDPGYDLSLEAVAGRLGVPPLPHRSALSDALVTAEILARLI 591 >UniRef50_B0PH29 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH29_9FIRM Length = 866 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 17/167 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVD--TGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++V D+E+TG D T V++ + + GE++ F + + A ++G+ Sbjct: 511 RVVVFDVESTGADVYTDDIVQIAAVRLSPGGGEAVRFERFLCPSRPVGASE---RVHGFS 567 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L A + D+ +G G N FD TI ++ +V Sbjct: 568 DAFLAENGGAP---CAALEDFLDFSKGCVLVGHNVMFDLTITSQNLARAG------SVQT 618 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + + L + + L V+ LG H+A+ D Sbjct: 619 LSNVWYDTLDI---SRRYMKDLPNHKLSTVSAALGAAHDPSHNAMDD 662 >UniRef50_Q4K5K3 Exonuclease n=3 Tax=Gammaproteobacteria RepID=Q4K5K3_PSEF5 Length = 203 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 18/181 (9%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++ V+D ETTG+ + E+ ++ ++ G + + ++ G Sbjct: 2 ERIAVIDFETTGISPSSSCRATEIAVVILEQGRIVERYQSLM-NAGVRVPAFIEQLTGIS 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + EV +++ N AFD + Sbjct: 61 NAML----RSAPPAEQVMNEVNEFVGITPLLAHNAAFDQKFWDFELGRIKRTRLQNFA-- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDMLR 180 + + + L + G+P H A+ DA A L Sbjct: 115 ---------CSLLLARRLMPAAPNHKLGTLTSFAGLPHTGQAHRAMADAEMAANLVAHLA 165 Query: 181 H 181 Sbjct: 166 G 166 >UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Streptococcus pneumoniae SP23-BS72 RepID=A5MUE3_STRPN Length = 308 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 61/186 (32%), Gaps = 18/186 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M I +D+ET + +GL+ G+ + + + + ++I+ Sbjct: 1 MTYSFIALDVET--ANSFRGSLCSIGLVKFIDGQEVD-SFYTLINPEEKFSSRNIKIHAI 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + E+ +++ N FD+ + + Y +PF + Sbjct: 58 KPE----DVIGAPTFPEVQKEIINFIDNLPIVAHNARFDAYALQDVYLKYEIPFDNIQYF 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +Y K+ + L +AE + + + H+A+ DA A + Sbjct: 114 ----------CSYQVCKIILTDLPNHKLHTLAEHFKISL-DHHNALSDARACGLILLEIL 162 Query: 181 HTAAAH 186 + Sbjct: 163 KLSKQT 168 >UniRef50_Q31GK8 Exonuclease n=8 Tax=Bacteria RepID=Q31GK8_THICR Length = 207 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 69/183 (37%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +++ D ETTGL+ V + + + E L +T Q AA ++++I+ Sbjct: 30 EVVCFDCETTGLNPRKDRIVSLSAIKIRGNEVLTSEALNLTFVQEAAISEESIKIHWIRN 89 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLTV 119 + L+EQ ++ G FD +V + ++P + + V Sbjct: 90 ED-TKAGLSEQ---EGIEAFLHFIGSRPLVGYYLEFDVAMVNQIIKPWLGITLPNAQIEV 145 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ ++ L DA+ + L +P + +H A DA T+ + L Sbjct: 146 SSRYYDYKEEIIPKKIIDL--------TFDAILKDLELPNLGQHDAFSDAFMTSLIYIKL 197 Query: 180 RHT 182 + Sbjct: 198 KSL 200 >UniRef50_D0I9Y6 DNA polymerase III epsilon subunit n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I9Y6_VIBHO Length = 239 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 10/179 (5%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ET+GLD + + +G + + + L HI V Q ++ I+ Sbjct: 54 LVLDFETSGLDPEQDKVLSMGWVEIRQSQIRLSSARHILVNQPVLNGYESARIHHLRPET 113 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L ++E A+ ++ D ++G + +AR + + + + VW Sbjct: 114 LRNCGVSEHH---AFSQLFDVMKGKVIVAHGSVIEKRFLARYLT---LHYGQINLPLVW- 166 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L L + L +V G+P H+A+ DA ATA + H Sbjct: 167 --LDTLKIEQYREQLRQVCRDWRLSSVRAAHGLPDYQAHNALNDAIATAELYLAQVHRL 223 >UniRef50_Q1QDN3 Exonuclease n=3 Tax=Psychrobacter RepID=Q1QDN3_PSYCK Length = 203 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 64/182 (35%), Gaps = 15/182 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYY 61 +Q + +D E TGL+ + V ++++ + H+ + + I+G Sbjct: 33 EQWVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVMPEGDTIVIHGLR 92 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA---RQRVTYSMPFSPLT 118 + G + ++ G P D + + + +P + Sbjct: 93 TADVEHAM----SYDEMLGLLLPFISNRPLVGFCPQIDVGFLNPLVKHYMGTHLPNEIID 148 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + ++ R+ G+ ++ + L+++ +P + H A DA TA F Sbjct: 149 IRPLYSRRMM-------GRSQGLSSQAQHLNSILAHYNIPELGTHDAYNDAIMTAMAFLH 201 Query: 179 LR 180 +R Sbjct: 202 MR 203 >UniRef50_B5JQE7 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQE7_9BACT Length = 220 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 16/185 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYY 61 ++L+ DLETTGL Y ++ + + T P+ ++ + Sbjct: 5 RELVAFDLETTGLRYKQEEITQIAGVRLGGVIMNVEDSFCTYVNPGKPIPENIQKLTRVR 64 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVG 120 + + + A DW+ T G + FD + + + + Sbjct: 65 DEDVKDA----PKPLEALQAFSDWVGDATLFGHDIYRFDFNFIRKYARQEGVETRTV--- 117 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVVNRHSAIGDAAATAFCFDM 178 R D LD +AERL G+ + RH A DA A + Sbjct: 118 -----RFIDTMDIFEVMWPDFSRLRNSLDDIAERLSAGLSSMRRHDAQSDAILLAHIYQR 172 Query: 179 LRHTA 183 ++ Sbjct: 173 IQDHP 177 >UniRef50_D1W6A9 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1W6A9_9BACT Length = 904 Score = 123 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 9/174 (5%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 + ++V D ETTGL+ V++ + + G+ + + + P+ + EI Sbjct: 520 QDIVVFDTETTGLNVFEDDIVQIAAVRMRQGKVVPGSSFVVFMETDRDIPQQLGEIENPL 579 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + R L A D++ + G N +D I+ Y S Sbjct: 580 IAEMQRHVLH--SHAEGLQMFMDYVGDSMLLGHNADYDYHILDFNLQRYLPAISLKEQCP 637 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + L + +L L + L + N H A D AT Sbjct: 638 RY------LDSLKLVRLLEPNLREYKLKHLLSVLHLEGENAHLADADVDATCNV 685 >UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus thermophilus RepID=Q746C7_THET2 Length = 1649 Score = 123 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 63/186 (33%), Gaps = 18/186 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +DLE T D A +EV + GE F ++ ++ D + ++ G Sbjct: 9 VALDLEATSTDPSEAEVLEVAAV---DGEGRVFHRYLATQRPLPPDHEVFQLTGIPYEEY 65 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A E+ +L G G N +D ++ R +P W Sbjct: 66 EAKKVAP---KEALEELLAFLGGRPLLGHNLLRYDLPLLQRHLEEAGLPR--------WQ 114 Query: 125 HRLADLAAYAAGKLNIDP--TELEGLDAV-AERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D A P E L + A LG P+ H A+ DA AT F L Sbjct: 115 GEALDTLRLAHLLFPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQATLAVFHRLLD 174 Query: 182 TAAAHL 187 L Sbjct: 175 RGRRAL 180 >UniRef50_Q1MYK1 DNA polymerase III subunit epsilon n=2 Tax=Gammaproteobacteria RepID=Q1MYK1_9GAMM Length = 238 Score = 123 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 58/178 (32%), Gaps = 9/178 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 + +D ETTGL+ + + +G++ + V +++ I+ Sbjct: 46 FMALDFETTGLNPNDDSIISIGMVPFSLQRIYCNNAVYWVVRPNTPLSEESILIHHIKHS 105 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTVG 120 + + + + + L + + + + ++ F + Sbjct: 106 EIQ----SAPRIERLLEPLLEKLSEHILVVHFQRIERLFLNNTLKEHLGETLQFPLIDTM 161 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L G++ P L+ ER +P H+A+ DA ATA F Sbjct: 162 EIEKKALKARQGLT-GRILNKPVGGIRLNNCRERYSLPQYQSHNALIDAQATAELFIA 218 >UniRef50_Q6Q234 Putative uncharacterized protein n=1 Tax=uncultured soil bacterium RepID=Q6Q234_9BACT Length = 195 Score = 123 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 19/189 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +V+D ETTGL T V++G+ +D+ + + + I+G Sbjct: 22 MHGDFVVLDTETTGLGP-TDEVVQIGI--IDSKGRTVLNTMVRPTRPVPSV--VTRIHGL 76 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + + + L G T N FD ++ + Y +P Sbjct: 77 TNEKLAEAS----PFSDLYVSLSSILAGVTVIAYNMDFDWRMLVQSAGLYGLPAFRTG-- 130 Query: 121 RVWHHRLADLAAYAAGKLNIDPTEL----EGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 R + AYA G D L +PVV H A+ DA T Sbjct: 131 ----DRQCAMKAYAQGHGMFDLKRRTYAYHKLGEACRHQKIPVVQAHDALSDARMTLALV 186 Query: 177 DMLRHTAAA 185 + +A Sbjct: 187 RKMAEFHSA 195 >UniRef50_C0N4N3 Exonuclease superfamily n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N4N3_9GAMM Length = 240 Score = 123 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 48/179 (26%), Gaps = 8/179 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYE 62 + +D ETTGLD V GL+ H V + +++ + Sbjct: 49 PFVALDFETTGLDPRYNEIVSFGLVPFTLRGIRPSDGHYQVVKPNCVLSEESIAFHRITH 108 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 + T E+ L G + + F + Sbjct: 109 SQVD----TAPPLEKVLDELLGRLSGCIVVVHYQQIERPFLDLACRKLWGEHCLFPLIDT 164 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + K LD R G+P + H A DA ATA F Sbjct: 165 MAIEARWQRSGWKHRLKKTLGLQPVSIRLDDSRRRYGLPSYSAHHAKVDAMATAELFLA 223 >UniRef50_Q47S15 Exonuclease n=3 Tax=Nocardiopsaceae RepID=Q47S15_THEFY Length = 516 Score = 123 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 19/186 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V+DLETTGL+ A E+ ++ + ++ V ++ A +G + Sbjct: 20 TYAVLDLETTGLNPKRGARVCEIAVVRMRGDGTVLDEYSTLVNPGSSIRNSAF--HGITD 77 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + T G++ +L G G F+ +A + +P + Sbjct: 78 TWV----KTAPSFDQVAGDLLAYLDGAIVVGHKLDFEEKFLAAEFARLGVPLTG------ 127 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLRH 181 + L A + +D L + L G HSA+GDA + A L + Sbjct: 128 ----IPGLCTLVAARYQLDRYG-YRLAHLHHLLTGRWPTAEHSALGDARSLAAVLTELIN 182 Query: 182 TAAAHL 187 A L Sbjct: 183 AAPQPL 188 >UniRef50_C6HVS0 DNA polymerase III, epsilon subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVS0_9BACT Length = 288 Score = 123 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 16/176 (9%) Query: 2 AKQLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L+ VD+ETTGL ++ VE+G ++V L + + P I+G Sbjct: 28 EEDLLFVDVETTGLLFENDARIVEIG-ISVWDSFGLKERMTSLINPGSPIPPMYTRIHGI 86 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W E +G N +FD ++ R+ + + Sbjct: 87 DDVMVEH----SPTFLEFWMENGIRFQGKVVIAHNLSFDMGMINRELMR-------RDMA 135 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + + + K + + L +A+ LGV +RH A D AA Sbjct: 136 PLGNPGIDTVPIL---KSLLPREKNHKLSHLAKSLGVRHDSRHRAEDDVAALEQVL 188 >UniRef50_A1SRL7 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRL7_PSYIN Length = 228 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 14/168 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ +D+E TGLD V +G++ + + + ++ + ++ I+G ++ Sbjct: 42 TLLALDIEMTGLDPKKDQMVSIGIIPIINAKIQPEFAQHKLIKIQGSVGQSAVIHGVLDK 101 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPLTVG 120 L A + + + + D + + + Sbjct: 102 DLADAL----PLEEALQWLFEQCKDKVLVAHHAQLDLQFLQQSLSKSGAHSFSMLAIDTL 157 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + R K + T L+A +R +P+ N H+A+ D Sbjct: 158 IIEKER-------ELRKHQVLKTGSLRLNACRDRYNLPIYNAHNALTD 198 >UniRef50_A3UR50 DNA polymerase III, epsilon chain n=6 Tax=Vibrionales RepID=A3UR50_VIBSP Length = 238 Score = 123 bits (309), Expect = 4e-27, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 9/176 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 IV+DLETTGLD + L + +G ++V G L HI ++ + + + IN Sbjct: 50 DYIVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQINAETAVINHITP 109 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A A + +G + +++ + + + + Sbjct: 110 QMLEEGA----SIHDAMLTFFEAAKGKIIVAHACMVEERFISQYLLRC---YGLRAIPLL 162 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 W L + ++ L ER G+P N H+A+ DA +TA F Sbjct: 163 WLDTLCIEKSMEKA-ISNHEEVDLTLAGTRERYGLPEYNNHNALADAVSTAELFLA 217 >UniRef50_UPI000185C08E DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C08E Length = 195 Score = 122 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 11/177 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEINGYY 61 + VD+ETTGLD + +G + V+ + + + + + ++ ++G Sbjct: 21 WLAVDVETTGLDPSKDQLLSIGWVAVEGRDIVLEESGHLIIRPEREEVSVGESATVHGLT 80 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + VA G++ + LRG + + Y + V Sbjct: 81 DDMVATGV----EAEVAVGKLLEALRGRKLLAHYARMEVGFLDPLCRKYFDARFDVPVAD 136 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + L ++ ++ G+P H A DA A A + Sbjct: 137 TMTREYDAILRANR----EPVRDELRLWSLCDKYGIPRFKAHHAFNDALACALVWLA 189 >UniRef50_Q47TJ3 DNA polymerase III, epsilon subunit n=10 Tax=Actinomycetales RepID=Q47TJ3_THEFY Length = 250 Score = 122 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 11/165 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ D+ETTG++ + V ++ S V P+A+ I+G Sbjct: 15 PLVGFDIETTGINLEQDRVVTAAIIETAADGSQRTRRTWLVNPGVEIPPEAVAIHGISTE 74 Query: 64 GLYREALTEQQTAVAWGEVQDWL--RGNTFAGSNPAFDSTIVARQRVTYS---MPFSPLT 118 + + ++ + + G N FD TI+ R+ Y + T Sbjct: 75 LAVADGIPAPVAVAEITDLLEQVLQSGTPLVIMNAPFDLTILDRECRRYGVVPLSERLDT 134 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 V V + D ++ L+A+ GVP H Sbjct: 135 VAPVIDPLILD------RHIDRYRRGKRTLEALCAHYGVPYDGSH 173 >UniRef50_A1TXA3 Exonuclease, RNase T and DNA polymerase III n=8 Tax=Gammaproteobacteria RepID=A1TXA3_MARAV Length = 240 Score = 122 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 8/179 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYE 62 L+ +D ETTGL+ D V +GL+ V + ++ I+G Sbjct: 49 PLVALDFETTGLEADQHSIVSIGLVPFTLTGIQLGQCWHQVVRPRLPLHKTSVTIHGITH 108 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYS--MPFSPLTV 119 + + + L G + + + + F + Sbjct: 109 SEIENA----PDLEDVLDPLFEHLNGRIPVVHYRNIERPFLNTALQWRLNEQLRFPVIDT 164 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H + +L L R G+P H+A+ DA ATA Sbjct: 165 MAIEAHLHPNRNPSRWQQLMGKKPISIRLADSRLRYGLPHYASHNALIDAIATAELLQA 223 >UniRef50_A0KJY7 DNA polymerase III, epsilon subunit n=2 Tax=Aeromonas RepID=A0KJY7_AERHH Length = 208 Score = 122 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGY 60 A + + +D ETT LD A V +G + + L Q A+ ++ I+G Sbjct: 28 ADEWVALDFETTSLDPAQAEIVAIGAVRIQGNRVLTGEALSIRVQAPASLSEHSVVIHGL 87 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPL 117 + L + E + ++ G + A+D I+ ++ + Sbjct: 88 RHQDLQQGMTLEAALRLLLA----FIGPRELVGYHIAYDLRILNLACQRCWGLTLAQRGI 143 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 V R++H L + D L A++ +G+P + H A+ DA A F Sbjct: 144 EVSRLYHDHL--------YRRYPDAAIDLHLAAISSHIGLPTLPAHDALSDAITAALIFL 195 Query: 178 MLRH 181 L Sbjct: 196 RLTR 199 >UniRef50_Q8NQY3 DNA polymerase III epsilon subunit and related 3'-5' exonucleases n=4 Tax=Corynebacterium RepID=Q8NQY3_CORGL Length = 218 Score = 122 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 66/190 (34%), Gaps = 17/190 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA--ADPKAMEINGYY 61 +L+ VD+ETTGL V +G + ++ V + + + + I+ Sbjct: 35 KLLAVDVETTGLKPHRHQIVSIGWVPINGDVIDLSGAGYVVIRGSEGFSVGSSAVIHQLT 94 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPLT 118 + + A G++ L+G + ++ + + + + Sbjct: 95 DDEIAAGI----DIKEALGQLLQALQGRAMLAHFSPIERDFISAACLKHFGTLLDVPLVD 150 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD- 177 + + ++ Y E L + +R G+P + H A+ DA A A + Sbjct: 151 TFAMERRHMERMSTY-------PRGEDLRLARIRQRYGLPNYSNHQALTDALACAEVYLV 203 Query: 178 MLRHTAAAHL 187 + H A L Sbjct: 204 QITHLRANTL 213 >UniRef50_A3EQH5 DNA polymerase III, epsilon subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3EQH5_9BACT Length = 265 Score = 122 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 18/167 (10%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 ++ +D+ETTGL D A +E+G + + G+ L T+ + A P + +ING Sbjct: 2 KVTFLDVETTGLLRDSRARIIELGFSSWENGKLLRKTS--TLIKGADIVPDNISKINGIT 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + W ++ ++G+ N AFD +V R+ + Sbjct: 60 TEMLKDA----PRFEEVWKSIKGDIQGSLLVAHNLAFDVGMVNRELILA-------DRIP 108 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + + + L + + L +A+ +G+ N H A+GD Sbjct: 109 LGNMGIDTLP---LSRKMLPELSSYRLGEIAKHMGILNENPHRAMGD 152 >UniRef50_A4A420 Exonuclease family n=3 Tax=unclassified Gammaproteobacteria RepID=A4A420_9GAMM Length = 221 Score = 122 bits (307), Expect = 6e-27, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 51/179 (28%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D E +GLD A + +G + V E + + + ++ I+ + Sbjct: 40 DFLVCDAEMSGLDPRQAELLSLGWVRVSGLEIALGSARHLLIRNRESVGQSATIHQLRDC 99 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + G N A D+ + L Sbjct: 100 ELRDAG----DVKEGLEALLAAAGGRVLVFHNAALDTAFLDYAAKAVFGAPLLLPT---- 151 Query: 124 HHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 D L L A ER G+ N H+A+GDA ATA Sbjct: 152 ----IDTLLLEKRLLQRQERPIGQGDLRLGACRERYGLTTHNAHNALGDAMATAELLLA 206 >UniRef50_Q057S0 DNA polymerase III, e subunit n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057S0_BUCCC Length = 231 Score = 122 bits (307), Expect = 7e-27, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 32/191 (16%) Query: 6 IVVDLETTGLDYDTALPVEVGLL------------NVDTGESLYFVPHITVEQLAAADPK 53 + +D+ETTG++ G + + H + + + Sbjct: 9 VFLDIETTGMNKY-------GCIYLNHKIIEIGIIETINRKYTGRYIHYYLYPQRSIESS 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 A +I+G E L + + E+ ++++ + N FD + + + ++ Sbjct: 62 AYKIHGISESFLSNK----PTFKDIYKEIFNFIKNSEIIVHNSNFDISFLDYEFFLLNIG 117 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAA 171 + + + + LDA+ R + +NR HSA+ DA Sbjct: 118 INKIKTFSTI------TDTLFIARKLFP-GKKNNLDALCARYKITNINRNFHSALLDAKI 170 Query: 172 TAFCFDMLRHT 182 + + Sbjct: 171 LMKLYMYMTSI 181 >UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria RepID=C2L049_9FIRM Length = 178 Score = 122 bits (306), Expect = 7e-27, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 18/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + IV D+ET + +G+ V+ G+ + V D +++ G Sbjct: 3 RFIVFDVET--PNRKNNRISAIGITVVEEGKISK-EFYSLVNPETNFDYFNVKLTGIS-- 57 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 W +++ N +FD ++ + Y + W Sbjct: 58 --KASVKDAPTFPELWQQIEPLFSDGMLVAHNASFDMNVLKNCLLDYEID---------W 106 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L G+ L+ V E G+ + H A D+ A A Sbjct: 107 KPYARYLCTVKMGRSLFPD-RSHKLNMVCEDFGISL-QHHRADSDSHACAEILLRYLEAG 164 Query: 184 AA 185 A Sbjct: 165 AE 166 >UniRef50_Q8EDA7 Exonuclease n=1 Tax=Shewanella oneidensis RepID=Q8EDA7_SHEON Length = 181 Score = 122 bits (306), Expect = 8e-27, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 24/168 (14%) Query: 9 DLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYRE 68 DLE TGLD + +GL+ ++ G + Q+ + ++ I+G + L + Sbjct: 2 DLEMTGLDPFKDQILSIGLVPIENGAIPLSHAQQKLVQIRGSVGQSAIIHGILDNHLTQA 61 Query: 69 ALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRL- 127 A + RG + D + + + ++H + Sbjct: 62 V----SIEEAMAWFMEQTRGRVLVAHHSPLDCRFLQQ------------DILTIYHQAVL 105 Query: 128 ---ADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGD 168 D +L + L A ER G+P+ HSA+ D Sbjct: 106 LPAIDTLVLEKQRLLREHSVLKEGSLRLGACRERYGLPIYGAHSALTD 153 >UniRef50_A8L7F0 Exonuclease RNase T and DNA polymerase III n=1 Tax=Frankia sp. EAN1pec RepID=A8L7F0_FRASN Length = 237 Score = 122 bits (306), Expect = 8e-27, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 62/183 (33%), Gaps = 9/183 (4%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + V+D ETTG D +T V+V LL V L + I ++ A I+G Sbjct: 6 RPMAVLDFETTGTDVETDRAVQVALLKVGPTGVLNQLCQI-IDPGVDVPEAAARIHGITT 64 Query: 63 RGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 RE + G+ + W G N +FD T++ R+ + Sbjct: 65 ERARREGRDPAEVLGRVGQALEGVWRDGIPVVIMNSSFDLTLLDRELRRHHGRSLAEADM 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V + D L+ L A+A V H A+ D TA L Sbjct: 125 LVLDPMVIDRE------LDPRRPGKRTLTALATHYRVRQEGAHDALADCLTTARIAWRLP 178 Query: 181 HTA 183 Sbjct: 179 RMH 181 >UniRef50_A5IU60 Exonuclease, RNase T and DNA polymerase III n=64 Tax=Staphylococcaceae RepID=A5IU60_STAA9 Length = 184 Score = 122 bits (306), Expect = 8e-27, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 19/182 (10%) Query: 1 MAKQ-LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + + +D ET + VG++ V + H V + ++++G Sbjct: 1 MIQDAFVALDFET--ANGKRTSICSVGMVKVIDSQITE-TFHTLVNPQDYFSQQNIKVHG 57 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + ++ N AFD ++ + +P LT Sbjct: 58 IQPEDVENA----PTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTY 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + +Y GL + E + H A+ DA A A L Sbjct: 114 FCSYQLAKRTVDSY-----------RYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRL 162 Query: 180 RH 181 Sbjct: 163 LK 164 >UniRef50_Q5E1T7 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) n=50 Tax=Proteobacteria RepID=Q5E1T7_VIBF1 Length = 238 Score = 122 bits (306), Expect = 8e-27, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 56/184 (30%), Gaps = 8/184 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 + + +D ETTGLD + + +GL+ H V+ + + ++ I+G Sbjct: 47 EFVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQDSLEENSVVIHGITH 106 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLTV 119 L +V D L G + + F + Sbjct: 107 SDLQGA----PDLRRILEQVLDALAGKVVVVHYRRIERDFFDANLRSLIGEGIVFPVVDT 162 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ + A L E L R G+P H A+ DA ATA F Sbjct: 163 MQIEGDYQQEQAKGFINWLKGKRPESIRLANTRLRYGLPSYPPHHALTDAIATAELFQAQ 222 Query: 180 RHTA 183 Sbjct: 223 VRYH 226 >UniRef50_C7M082 Exonuclease RNase T and DNA polymerase III n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M082_ACIFD Length = 475 Score = 122 bits (306), Expect = 9e-27, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 51/182 (28%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + ++D+ETTG EV ++ V G +L V P + + G Sbjct: 17 RFAILDVETTGAASGADELTEVAMMVVQEGRAL-AHLQSLVHTDRPIPPAIVALTGISNE 75 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + L G G N FD + + + + Sbjct: 76 LVADA----PSARTVIERTARLLEGTVMVGHNVRFDRSFLGAAADAAGITLPEVP----- 126 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D + L L +A L +P H A+ D T L A Sbjct: 127 ---VLDTLTLSR-VLLDGEVPNHRLATLAHYLQLP-PPSHRAMADVVTTVALLHRLIERA 181 Query: 184 AA 185 A Sbjct: 182 GA 183 >UniRef50_C8WHL0 Exonuclease RNase T and DNA polymerase III n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WHL0_EGGLE Length = 367 Score = 122 bits (306), Expect = 9e-27, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 D+ET + +G + D ++ V ++ D + I+G Sbjct: 3 YTFFDVET--PNRRNDRICSIGAVVTDQDGTVVEKKSYLVNPESSFDDINVRIHGIAPVD 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + N FD +++ + V+Y +P ++ Sbjct: 61 VRNAKTFPELWYDSLSAFFPVDG---VVAHNARFDLSVLTKTLVSYDIPSPKMSYA---- 113 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L L V E LG+ + H A DA A F L A Sbjct: 114 ---CTLDMSKKIDFIGGG----KLPHVCEALGIELERHHQAESDATACMRVFWTLVGMAG 166 >UniRef50_D2Q9U9 DNA polymerase III, epsilon subunit n=2 Tax=Bifidobacterium dentium RepID=D2Q9U9_9BIFI Length = 212 Score = 121 bits (305), Expect = 9e-27, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 52/190 (27%), Gaps = 21/190 (11%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 +++D ETTGL + A +E+G L V G + P+ + + G Sbjct: 24 TYVMLDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDPQRPLPEFISRLTGIS 83 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGN-------TFAGSNPAFDSTIVARQRVTYSMPF 114 + L + A WL T N FD + + Sbjct: 84 DGMLRDK----PTADAAMLRFHQWLDDVWPTGKPLTIIAHNAEFDIGFLDAAERAHDPDA 139 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + R + + + + V H A+ DA Sbjct: 140 NEFD------CRWLCTKEMSWE--LNPRKRHHRVSDLIVDYRIGDVEEHRALSDAIQEQM 191 Query: 175 CFDMLRHTAA 184 + L A+ Sbjct: 192 IYRALCREAS 201 >UniRef50_A7A5A0 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5A0_BIFAD Length = 261 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 17/162 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VD+ETTGL A +E+G + + G + + V K +I G +R Sbjct: 98 DYVAVDIETTGLG-RDARIIELGAVRIRHGRKVASYSQL-VNPQIPIPAKVTQITGITDR 155 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + + +T+ G N FD ++AR+ ++ Sbjct: 156 NVKGK----PTIDKALPKFYAFCGRDTWIGHNIRRFDIPVIAREAQRVGAGMPDVSF--- 208 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + + + + + G+ RH Sbjct: 209 -------YDTMELSQALLPQLDHHRVVDLIRYFGIAKTERHR 243 >UniRef50_C8WSI6 Exonuclease RNase T and DNA polymerase III n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WSI6_ALIAD Length = 218 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 51/180 (28%), Gaps = 21/180 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ---LAAADPKAMEINGY 60 V+DLET+G + V S + + +A E+ G Sbjct: 29 PYFVLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAIVRHDDVADVPSHIWELTGL 88 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + VA + G + + D + R Sbjct: 89 TPE----AMRDGEPLEVALRRALELGAGRVWVAHHVRHDLGFLQRA------------TD 132 Query: 121 RVWHHRL--ADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 +W RL + ++ LD E LG+PVV RH A D TA + Sbjct: 133 ALWRLRLRPLAMDTAVVAQVLARAARPLTLDEACEWLGIPVVGRHRADADVRMTAAVWRK 192 >UniRef50_C5BKW5 Putative exonuclease n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BKW5_TERTT Length = 235 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 18/187 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VVD E +GLD + + + +G + ++ + + + I+G ++ Sbjct: 42 RFLVVDCEMSGLDANRSQLLSIGWVVIENARITHASGKHLLIHADRGAGDSTRIHGLHDA 101 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVAR---QRVTYSMPFSPLTVG 120 + + + G+ + D + + + + F + Sbjct: 102 TIAGAKSAAAAI----TLLAKQVPGSVLVFHHAPLDLRFLQQTAYENFRCPLLFGYVDTM 157 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDML 179 + RL L ER G+ P+ H+A+ DA ATA Sbjct: 158 LIEQRRL----------QLQGAESGLRLAQCRERYGLPPISGHHNAMTDARATAELLLAQ 207 Query: 180 RHTAAAH 186 Sbjct: 208 TSYLGGA 214 >UniRef50_A4B904 DNA polymerase III subunit epsilon n=1 Tax=Reinekea blandensis MED297 RepID=A4B904_9GAMM Length = 236 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + VD+ETTGL+ + + +GL+ + + +++ ++ Sbjct: 47 EFVAVDIETTGLNAEQDDIISIGLVPFTAQRITLAKARHWLVRTRNLTSESVVVHRITHS 106 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMP-----FS 115 + + EV L+G + R+ + F Sbjct: 107 DIAQA----PPLRAVLSEVIPCLQGRQVVVH-----YRYMEREFFRQSVAGLHESTWLFP 157 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + L + +L L V ER +P H+A+ DA ATA Sbjct: 158 VIDTLELEAAHLRQKQSI-VSRLFKQTLPSLRLPNVRERYNLPAYENHNALTDALATAEL 216 Query: 176 FDM 178 Sbjct: 217 LQA 219 >UniRef50_A5U937 DNA polymerase III subunit epsilon DnaQ n=20 Tax=Mycobacterium RepID=A5U937_MYCTA Length = 329 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 60/187 (32%), Gaps = 23/187 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + V+D+ET+G A + + +L +D L + DP ++G Sbjct: 12 QDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP--KVDPGPTHVHGL 69 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + Q A GEV D LRG T N AFD +A + V Sbjct: 70 TAAMLDG----QPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFV- 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + L+ +A GVP H A D L Sbjct: 125 ---------MCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRV-------LT 168 Query: 181 HTAAAHL 187 AA L Sbjct: 169 GILAAAL 175 >UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine microorganism HF4000_001N02 RepID=B3T077_9ZZZZ Length = 299 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 59/186 (31%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++ DLETTGLD V+ L+ D G + + + A I+G E Sbjct: 38 RVLGFDLETTGLDARKDRIVQYALIGSDVDGSHINLASLVDPRRGIPT--AASRIHGISE 95 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 + G + + + G N FD + + + + Sbjct: 96 EDVRGVG----SFETHVGAISELIEDAVIVGHNISNFDWRFLELECMRAGVETPIPRAI- 150 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + Y+ + P L + R + + HSA DA A+ + H Sbjct: 151 --------VDTYSLARKLRIPGRR-TLGVLCARYDISIGRAHSADADAGASLLLLWSMMH 201 Query: 182 TAAAHL 187 + A Sbjct: 202 SHPAEF 207 >UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIP6_9BACT Length = 261 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 19/177 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ DLETTGL+ +E+ + V V +A EI G + Sbjct: 7 RPIVFFDLETTGLNPTEDRIIEICCIKVHPDGKRDIKTR-RVNPEKPISSEASEITGITD 65 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 + E + + G +G N FD ++ + + F Sbjct: 66 E----DVKDEPTFKQMAKGIYKFFEGCDISGYNIMRFDLRVLTEEFKRAGISFDASAHDL 121 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFD 177 V R+ E L+A + H+A D AT + Sbjct: 122 VDVQRI------------FHKKEPRTLEAALRFYCKKDLEGAHAAENDVIATIDVLE 166 >UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2_9FIRM Length = 202 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 19/174 (10%) Query: 5 LIVVDLET-TGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D ET TG V + V G+ + D + I+G + Sbjct: 20 YIAIDFETATG---SMNSACSVATVEVRDGQLKEGWTTLIQPPGLRFDSFNIGIHGISPK 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A W E+++ L G N +FD ++ + R+ Sbjct: 77 DVTDA----PTFAEVWEELKERLAGKIVVAHNASFDMGVLKASLLAN----------RLQ 122 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L+ V L + H A+ DA A Sbjct: 123 APYFRTCCTVRIARKVWPALDDHKLNTVGAHLNI-NFRHHRALDDARTCAAILL 175 >UniRef50_Q682U6 Putative uncharacterized protein At5g26940 n=3 Tax=Arabidopsis thaliana RepID=Q682U6_ARATH Length = 316 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 24/189 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +IV DLETTGL +E+ ++ G + T+ I+G Sbjct: 110 TVIVSDLETTGLHRKNERIIEIAAQDIAGGG---YSTFQTLVNPGVVPITNAHIHGIRND 166 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN-------TFAGSNP-AFDSTIVARQRVTYSMPFS 115 + R + ++ N +FD + + S Sbjct: 167 MVCR--PEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIP 224 Query: 116 PLTVGRVWHHRLADLAAYAAG--KLNIDPTE-LEGLDAVAERLGVPVV-NRHSAIGDAAA 171 + L D A K + L+A+A+ + + H A+ D Sbjct: 225 H-------NWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLL 277 Query: 172 TAFCFDMLR 180 + F L Sbjct: 278 LSKVFQKLT 286 >UniRef50_D1XX28 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1XX28_9BACT Length = 894 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 13/174 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY--FVPHITVEQLA--AADPKAMEIN 58 ++++V D ETTGLD T +E+ + + G+ + +I ++ K + Sbjct: 510 QEIVVFDTETTGLDVFTDDIIEISAIKIKEGKIVGEPLDLYIYTDKPILQKLGTKENPLY 569 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 Y + L L + A + +++ +T G N +D I+ Y Sbjct: 570 EIYHKKLASGELL--KANDALNKFIEFVDNSTLIGHNINYDYHILDNCLKRY-------A 620 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + +H + +L L+ + ER + +N H +I D AT Sbjct: 621 NDCMDNHSYKYFDSLKLIRLLEPSLRSYKLEYLLERFQLEGINSHQSIDDVKAT 674 >UniRef50_B6WSP3 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSP3_9DELT Length = 173 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 21/180 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + +D ET+G Y VGL ++ G ++ + ++ ++G Sbjct: 2 MTGRYVALDFETSG--YAAHSACAVGLCRIEDGAVTDS--FYSLIRPPSSRVLFTHVHGL 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + W ++ ++ G N FD ++ Sbjct: 58 T----WPLLKDAPTFTEVWPQLAAFMEGSRAILAHNAGFDRRVLHASCQALG-------- 105 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + +L L + ++ LD+V + G+P+ + H A DA A A + L Sbjct: 106 --LVQPQLPFLCTLKGARRSLP-LASRALDSVCDYFGIPL-DHHHAGSDARACAEIYLRL 161 >UniRef50_Q084B5 Exonuclease, RNase T and DNA polymerase III n=8 Tax=Shewanella RepID=Q084B5_SHEFN Length = 229 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 64/181 (35%), Gaps = 14/181 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L+ +DLE TGLD + +GL+ + G + ++ + ++ ++G Sbjct: 39 LDAPLMAIDLEMTGLDPIHDQVISIGLVPIINGVIPLDKAQHMMISISGSVGQSATVHGI 98 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPL 117 + L+ A A +G + D + +Q + S+P + Sbjct: 99 VDNQLHMAL----TLAEAIDWFLSKTKGYILVAHHAPLDIQFIQQQLIRCFGQSIPLVFI 154 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + R + + L+A R +PV + H+A+ DA + A Sbjct: 155 DTLAIEKKRC-------LMQQPVLKEGSLRLNASRTRYRLPVYSAHNALIDALSCAELLL 207 Query: 178 M 178 Sbjct: 208 A 208 >UniRef50_C1D0R4 Putative DNA-directed DNA polymerase (DNA polymerase III, subunit) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0R4_DEIDV Length = 204 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 15/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYER 63 L+ +D E+TG++ ++VGL +D G + + I+G Sbjct: 13 LVALDFESTGMNPAHDEVIQVGLAPLDAGAVDLGGAWAQWVRPTRPFRADTVAIHGLSYE 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + E+ L+G A + + R + T+ + Sbjct: 73 LLQEA----PAISTVRLELGARLQGRVLVAHYAALELGFLKRWGLR-----PAATLDTLM 123 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D + A + + L A+A R GV V H A+ DA TA F +L H Sbjct: 124 LALALDRQSTATARRDA-----YTLSALARRFGVEVYGEHDALADALITAQVFLVLAH 176 >UniRef50_Q1QYX2 Exonuclease n=2 Tax=Gammaproteobacteria RepID=Q1QYX2_CHRSD Length = 241 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 10/177 (5%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYERGL 65 +D+ETTGLD V +GL+ D + V +++ + + Sbjct: 53 AMDMETTGLDEQRHAIVSIGLVPFDLRRIRMAQRRYWIVRPPRPLSERSITFHHITHTEI 112 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR---VTYSMPFSPLTVGRV 122 + E+ + + G+ + T + + F + + Sbjct: 113 EQA----PDLDEILDELLEAMAGHVMVVHYRHIERTFLNAAVKARRGEGIHFPVIDTMSL 168 Query: 123 WHHRLADLAAYAAGKLNIDPTE-LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 RL +A + + L R G+P H A+ DA ATA Sbjct: 169 E-ARLHRQPLWARFRRWMGRPPASIRLPDSRTRYGLPPYQAHHALIDALATAELLQA 224 >UniRef50_A3WQA1 3'-5' exonuclease n=1 Tax=Idiomarina baltica OS145 RepID=A3WQA1_9GAMM Length = 217 Score = 120 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 19/185 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV--PHITVEQLAAADPKAMEIN 58 I +D+ETTGLD + + + + L H ++ I+ Sbjct: 25 QEHTYIAIDIETTGLDPINDQILSIAWVPIKPPMILIGEAQYHEFCVDPDVDLQQSPTIH 84 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + L +++D L G + + D + + R+T ++ F PL Sbjct: 85 GLTKAQLSSGG----DVKKVLKDLEDKLYGCVMVCHHRSLDWSYLRDNRLTENLHFEPLG 140 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPT-----ELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 V D ++ K++ D L A R G+P+ H A+ DA A A Sbjct: 141 VF--------DTLSFEKNKMSFDNEFQLHNSSLTLAACRTRHGLPIYTSHHAMDDAIACA 192 Query: 174 FCFDM 178 F Sbjct: 193 ELFLA 197 >UniRef50_A4IMY1 Putative uncharacterized protein n=1 Tax=Geobacillus thermodenitrificans NG80-2 RepID=A4IMY1_GEOTN Length = 242 Score = 120 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 18/179 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++D+ETTG + + G + V+ ++ G Sbjct: 61 PFVIIDMETTGFSPQQGDEILAMAAAKTVNG-LVTGTYMTLVKPEKPIPEHISDLTGIE- 118 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 ++ + A A ++ G + D + + + Sbjct: 119 ---AKDVVFAPPLAEALRTFVPFISAGVLVGYHIGHDLSFLRHVLWRHYRQK-------- 167 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 W R D+ +++ LD G+ RH+A GD A + +L Sbjct: 168 WSWRFVDMQPI----VSLVRHPCPTLDDALACYGIDCPRRHTADGDVEAMVKLWAILLG 222 >UniRef50_Q0VMJ4 Nuclease, putative n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VMJ4_ALCBS Length = 173 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 16/180 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYERG 64 + +D ETTGLD TA V + + + G L + + + ++ I+ Sbjct: 2 VAIDCETTGLDSRTAELVSIAAVVIKEGRVLSSQSLNVKLAAPDSLREDSICIHRLRPVD 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLTVGR 121 L A A + + G AFD ++ R + +P L + Sbjct: 62 LEGGA----SIREALEALLALIDNRPLVGWCVAFDVAMINRYLRPLMGFDLPNDTLELSA 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++ ++ D T DA+A L VPV+ RH+A GDA +A + L+ Sbjct: 118 LYQRKM--------RYWQPDITPDLRFDAMASALQVPVIERHTARGDAVTSALMYLQLQK 169 >UniRef50_C2MC99 Exonuclease n=3 Tax=Bacteroidales RepID=C2MC99_9PORP Length = 189 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 21/178 (11%) Query: 4 QLIVVDLET-TGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 I +D ET TG EVG+ V GE + + M+ +G Sbjct: 5 DFIAIDFETATG---QRTSICEVGICLVRNGEIAETRSWLVQPEGNRYSYWNMQCHGIRP 61 Query: 63 RGLYREALTEQQTAVAWGEVQD-WLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R A W E+ + ++ G N FD + + + Y + L Sbjct: 62 EDTKRA----PSFAEVWQEIAEQYIGEGALLVAHNVPFDRSCLEQAAQLYELTLPELQWD 117 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + D L + E+L +P H A DA A + Sbjct: 118 ----------CSLRRARQIYD-YGCHTLAYLCEQLSIPEGRHHRAGDDAEMCARLYLR 164 >UniRef50_C5WML0 Putative uncharacterized protein Sb01g037840 n=1 Tax=Sorghum bicolor RepID=C5WML0_SORBI Length = 583 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 24/188 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++V D+ETTG +E + ++ G++ F I E+ ++G Sbjct: 382 TILVFDIETTGFSRREDRIIEFAVRDLMGGKNSTFQTLINPEKEVR----NAYVHGISNS 437 Query: 64 GLYREALTEQQTAVAWGEVQDWL-----RGNTF--AGSNPA-FDSTIVARQRVTYSMPFS 115 L R + + ++ G N FD + + + Sbjct: 438 MLCR--PDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFRRCKLEMP 495 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTE--LEGLDAVAERLGVPVVN-RHSAIGDAAAT 172 D A ++ D ++ L + ER +P+ H A+ D Sbjct: 496 G-------DWLFVDTLPIARQLVDSDGSKLSSVSLKNLRERYNIPLTGSAHRAMQDVTTL 548 Query: 173 AFCFDMLR 180 + L Sbjct: 549 CYVLQKLT 556 >UniRef50_C8PWB9 DNA polymerase III subunit epsilon n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWB9_9GAMM Length = 215 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 19/188 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVE--QLAAADPKAME 56 A + + +DLE TGL+ + VG + V G + +++ + Sbjct: 38 ANEWVSLDLEMTGLNAKQDYILSVGAVQVRKESNGFVIDTDSALSLVCRPPVMPTHDTIV 97 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMP 113 I+G + ++ L+ G D + + + Sbjct: 98 IHGLRPIDVDNGL----SYDEMLTQLLPMLKNRPIIGFCVDMDMAFLNAIAKPFLGVELA 153 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + V R++ G+L L+ + E +P + H+A+ DA TA Sbjct: 154 NKLVDVSRLYQQNQHRHDPSQVGQLPH-------LNQLLEEYQIPRLPAHNALNDAIMTA 206 Query: 174 FCFDMLRH 181 F L Sbjct: 207 MLFTHLMQ 214 >UniRef50_A6W3F5 Exonuclease RNase T and DNA polymerase III n=2 Tax=Marinomonas RepID=A6W3F5_MARMS Length = 236 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 11/181 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY--FVPHITVEQLAAADPKAMEIN 58 L+ +DLETTGLD + +GL+ + + + + + + + +++ I+ Sbjct: 47 QDTPLLALDLETTGLDPSQDEIISLGLIPL-NHKIIRCQGAKYWMAKPECSLNAESVTIH 105 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV-ARQRVTYSMPFSPL 117 L + E+ L A + + Y P Sbjct: 106 EITHSELEEA----PRLHAILDEILLALTHQVIVVHCVAIERQFLLKASMKIYGYPLYFP 161 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + R + LDA +R +P H A+ DA ++A Sbjct: 162 VLDTMDIERQVTFKPWWKR---FGRRPSLRLDACRQRYKLPRYKAHHALTDALSSAELLQ 218 Query: 178 M 178 Sbjct: 219 A 219 >UniRef50_Q2Q0H1 Putative DNA polymerase type III, exonuclease domain n=1 Tax=uncultured organism HF70_19B12 RepID=Q2Q0H1_9ZZZZ Length = 270 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 22/184 (11%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV---EQLAAADPKAMEINGYYERG 64 D ETTGL+ ++ + G + V + +M ++G Sbjct: 12 FDTETTGLNPRKDRILQYAFI----GRDVDGSSVCQVELIDPGIKIPEASMNVHGISNED 67 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ + + G G N FD + + + Sbjct: 68 VTGRG----SFGMHSNDIAELIDGAIIVGHNINAFDWRFIEFEFMRVGEAVP-------S 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L D A G L + +R G+ + HSA DAAAT + Sbjct: 117 PYALVDTLELARGLRI---PGRHTLGHLCKRYGIGLDRAHSADADAAATLILLWKMIEGN 173 Query: 184 AAHL 187 + L Sbjct: 174 QSIL 177 >UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostridiales RepID=C7H6D8_9FIRM Length = 244 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 55/181 (30%), Gaps = 21/181 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF------VPHITVEQLAAADPKAMEIN 58 ++ D ETTGL+ ++ +E+ + V+ E + + + K +E+ Sbjct: 14 VVFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKIVELT 73 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWL-RGNT-FAGSNPAFDSTIVARQRVTYSMPFSP 116 G + L E +TE A A + + G N FD A + Sbjct: 74 GITDEQLENEGITE---AEAAARFTELISGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPE 130 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATAF 174 + D + L + V N H AI D AA Sbjct: 131 A----LKAADYLDSLTVYKDRRAYP----HKLANAILTYKLEGKVQNSHRAIDDVAALFE 182 Query: 175 C 175 Sbjct: 183 V 183 >UniRef50_C6W9X5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W9X5_ACTMD Length = 262 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 58/186 (31%), Gaps = 13/186 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG----ESLYFVPHITVEQLAAADPKAMEING 59 L+ +DLETT ++ V ++ + G + V + A I+G Sbjct: 14 PLLALDLETTDVEPRRDRIVTASVVVITPGAEGAKPDVRVRTWLADPGVPIPASATAIHG 73 Query: 60 YYERGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 E + + W N FD T++ + + + + Sbjct: 74 ISTEQARAEGRPVGEVVAEVEALLAELWTASTPLCAFNAPFDLTMLDAELLRHHGRSLRV 133 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + G V D L+ L AV E GV + H++ GDA A A Sbjct: 134 S-GPVVDPLCVD------RALDPRRVGKRTLGAVCEHHGVRLEGAHTSAGDALAAARLAW 186 Query: 178 MLRHTA 183 L Sbjct: 187 KLARVH 192 >UniRef50_C9S192 Exonuclease RNase T and DNA polymerase III n=6 Tax=Geobacillus RepID=C9S192_GEOSY Length = 242 Score = 119 bits (300), Expect = 4e-26, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 20/179 (11%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 +++D+ETTG + + + G ++T+ + P+ + + G Sbjct: 61 PFVIIDMETTGFSPEQGDEILAMAAAKTVGGVVTD--AYMTLVKPEKPIPEHISALTGIE 118 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + A A ++ G + D + + Sbjct: 119 ----AKDVVFAPPLAEALRTFVPFIAAGVLIGYHIGHDLAFLRHALWRHYRQK------- 167 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 W R DL + + D G+ RH+A GD A A + +L Sbjct: 168 -WSGRFVDLQPM----MTLIGHSCPTFDDALACYGIRCPRRHTADGDVEAMAKLWAILL 221 >UniRef50_C1SJH8 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJH8_9BACT Length = 179 Score = 119 bits (299), Expect = 5e-26, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 47/164 (28%), Gaps = 18/164 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPK-AMEINGY 60 V D ETTG+ D A +E+G + V G L T+ A P A ++G Sbjct: 10 TFTVFDTETTGMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLINPKAPIPYNAYSVHGI 69 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + A N FD + V+ Sbjct: 70 STAMVADK----PEIKDVLPGFFSFTENTIIAAHNARFDCSFVSHHSAEC---------- 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RH 163 + + + K + L + + + RH Sbjct: 116 CIVNPMTKIVDTVKLAKSAHSGLKSYSLGNLIHYFSMDIPPSRH 159 >UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKT0_9SPHI Length = 245 Score = 119 bits (299), Expect = 5e-26, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 27/181 (14%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNV-DTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K ++ DLETTG D V++ ++ + G + I P+ +++G Sbjct: 5 KPIVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEKERLINPT--IPIPPEVTKVHGVS 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 + + + +++RG AG N FD ++ + + F V Sbjct: 63 DEMVKDA----PTFHQVAKSLFEFIRGCDLAGYNHLNFDMPLLIEEFARAGVVFPEPDVQ 118 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV----PVVNRHSAIGDAAATAFCF 176 + ++ + + N H+A+ D AT F Sbjct: 119 YI--------DVMKVYYHFHPR-------TLSAAYQLYCHKELENAHNAMADTQATLEIF 163 Query: 177 D 177 + Sbjct: 164 E 164 >UniRef50_D1VY91 UvrD/REP helicase n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1VY91_9BACT Length = 905 Score = 118 bits (298), Expect = 7e-26, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 57/188 (30%), Gaps = 13/188 (6%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++V D ETTGL+ V++ + + G + + + P+ ++ Sbjct: 520 EDIVVFDTETTGLNVFEDDIVQIAAVRMRQGCVVPGSEFVVFMRTNREIPR--KLGNIDN 577 Query: 63 ---RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L +++ + G N +D I+ Y + + Sbjct: 578 PLIEEIQHHQLYSPS--EGLKMFLEYVGNSRLLGHNADYDYHILNFNLQRY---LPDIQL 632 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + +L + L + L + N H A D AT Sbjct: 633 EERCNMYFD---SLKLIRLLEPNLKEYKLKYLLSVLHLEGQNSHLADADVHATCSVVRHC 689 Query: 180 RHTAAAHL 187 A H+ Sbjct: 690 YEKAKLHI 697 >UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D091_MYXXD Length = 988 Score = 118 bits (298), Expect = 7e-26, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 25/177 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYERG 64 + +DLETTGLD +E+G + + G + F + + + G + Sbjct: 12 VFLDLETTGLDPRVDEVIELGCIFFENGREVERFARLYSASRPLPL--TIRRLTGLTDAD 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E+++ L G T N F+ + + H Sbjct: 70 LEG----HPRFGTDIAELREKLSGWTVVAHNAPFEKGFL-------------PDLLGPIH 112 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D L+++ G+ + H A+ D A + +L H Sbjct: 113 APVLDSCELMHY--LHPELPSHSLESLLRWGGLALRQPHRAVSDCEA---VYSVLVH 164 >UniRef50_A4HKS0 Exonuclease-like protein (Dna polymerase iii epsilon subunit-like exonuclease) n=1 Tax=Leishmania braziliensis RepID=A4HKS0_LEIBR Length = 292 Score = 118 bits (297), Expect = 9e-26, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 55/239 (23%), Gaps = 76/239 (31%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD---------------------------------- 31 +VVDLETTG +EVG + + Sbjct: 53 VVVDLETTGFSPTADEILEVGCVELRWTPSSRTTLTGPKDADPCAPPLEKQGSCGVLEGL 112 Query: 32 ---TGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRG 88 G F ++ A ++G + A A +R Sbjct: 113 WTRGGRV--FHRYVRPSHPRRITAAATAVHGITWEKVQHCA-PWPVVASELVAYMTLIRA 169 Query: 89 N-----------------------TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + N FD+ +A WH Sbjct: 170 DALFTKSVQVEAAQHGGHSAVHLPPLVAHNALFDARFLAHHLQRCGYQI-------FWHP 222 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-----VVNRHSAIGDAAATAFCFDML 179 + ++ LD + L + N H A+ DA TA F + Sbjct: 223 QYPLTCTRQWAQVAYPHLAN-NLDTLCAFLSIDGAADRATNGHGALTDATLTALLFLRM 280 >UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S7Q3_PROA2 Length = 189 Score = 118 bits (297), Expect = 9e-26, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 21/193 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEING 59 K+++ D+ETTG + +++G + G + + A P A+ I+G Sbjct: 3 QHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDGVVVEECNLKCAPHEGAEISPDALAISG 62 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNT----------FAGSNPAFDSTIVARQRVT 109 L + A+ + + +L + AG N FD + Sbjct: 63 TERSELESRMTSH----EAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRH 118 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDP--TELEGLDAVAERLGVPVVNRHSAIG 167 + +G + R+ D K L+ V G+ + + H A+ Sbjct: 119 HG---DKYGIGSFINWRMLDPLPLLFIKDFTRQITLPDYRLETVCRHFGIAL-HAHDAMS 174 Query: 168 DAAATAFCFDMLR 180 D AT L Sbjct: 175 DIRATRELLLKLL 187 >UniRef50_UPI0001C41BCD exonuclease n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41BCD Length = 261 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 10/172 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++I D ET+GL+ + +E+G+L ++ G+ + + D I G Sbjct: 45 RIIFFDTETSGLNPNYCKIIELGMLVIEDGKIIE-EYDKLINIGERIDSTITRITGITND 103 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E ++E A E + G N FD + + + Sbjct: 104 MLIDEGVSEGDVAQDLKE--KLISGTLMIAYNCQFDLSF---AYGLLKRHYPHEAEAIIE 158 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + D + E + VN H AIGDA Sbjct: 159 DVKWLDPMTVFKDRKAYP----HKFSDAVEHYDIRNVNFHRAIGDAKGLYEV 206 >UniRef50_Q3ILF6 Putative DNA polymerase, exonuclease activity n=2 Tax=Alteromonadales RepID=Q3ILF6_PSEHT Length = 207 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 16/180 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +V+DLE TGLD V + + ++ + + ++ +G Sbjct: 23 QRYLVIDLELTGLDAKQHEIVSLAWVVIENQCIKMSQSQHLINKEVKNLAQSPVYHGINN 82 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + Q + + N D + ++ P Sbjct: 83 DNVAAG----QSLHSILEHLSEHFNDCILVFHNAMLDWGFLKPALKNANITTRP------ 132 Query: 123 WHHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + +L E L+ R +P + H A+ DA ATA F Sbjct: 133 --KLILCTLQIEKKRLQHQGVEIKQDDLTLNECRNRYELPSYHCHHALTDAQATAELFLA 190 >UniRef50_Q0J9Z9 Os04g0623400 protein n=4 Tax=Oryza sativa RepID=Q0J9Z9_ORYSJ Length = 282 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 19/188 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A ++V DLETTG + VE L ++ G++ F + E+ P +E + Sbjct: 59 AATILVFDLETTGYFHKDHRIVEFALCDLSGGKNSTFETLVNPER---TVPDYVE-HLIK 114 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGN------TF-AGSNP-AFDSTIVARQRVTYSMP 113 + + + ++R N FD+ +A++ S P Sbjct: 115 IGTDLVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAP 174 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAAT 172 + L L+A+ E G+ + H A+ D Sbjct: 175 LPADWLF------FDTLLLAKKMVKAEGKKRRTSLEALREHYGIVSHDDAHRAMRDVMIL 228 Query: 173 AFCFDMLR 180 + F + Sbjct: 229 SQVFQKMT 236 >UniRef50_Q7UJ56 Probable DNA polymerase III polC-type n=1 Tax=Rhodopirellula baltica RepID=Q7UJ56_RHOBA Length = 355 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 19/168 (11%) Query: 4 QLIVVDLET-TGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +D ET T + ++ + V GE + + + P ++I+G Sbjct: 2 DFTAIDFETAT---RRSDSACQLAAVRVRGGEIVDSACWLIRPRPFVFSPANIQIHGITP 58 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 E + W E+Q L + N +FD ++ ++ P + Sbjct: 59 ----GMVREEPEFGELWPEIQSTLGDDCLIAHNASFDLGVLMACLESHDHPVPDMQYS-- 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 A + GL +++ LG+ H A+ D+ Sbjct: 113 --------CTRAIARRTWPQQPRFGLKPLSDWLGI-RFRHHDALEDSI 151 >UniRef50_D0WP21 Putative DNA polymerase III epsilon subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WP21_9ACTO Length = 240 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 7/183 (3%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +I D ETTG+D V L+ V E + + +A ++G Sbjct: 10 SSPVIGFDTETTGIDPKRDRLVTCSLVAVT--EEGVSKRYWLADPGVEIPERAGAVHGIT 67 Query: 62 ERGLYREALT-EQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E ++ + + + G+ N +D T++ + + +P + Sbjct: 68 TERARAEGRPSKEVLEEVAALLAEHMGRGHPAVAFNATYDFTLLESELDRHGLPTLAERL 127 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDM 178 G + + L+ + GV + H+A D AT Sbjct: 128 GGEVFPVVDPYLLDRSADRYRK--GKRRLEDLCRHYGVHAEDDFHNAEADVLATLRLLAA 185 Query: 179 LRH 181 + Sbjct: 186 IVR 188 >UniRef50_Q5QUI3 3'-5' exonuclease n=1 Tax=Idiomarina loihiensis RepID=Q5QUI3_IDILO Length = 215 Score = 117 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 27/189 (14%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVD------TGESLYFVPHITVEQLAAADPKA 54 + + + +D+E+TGLD + + +++ + H +L + Sbjct: 23 QSLRYVALDIESTGLDPKKHQILSIAWMSIHPPVMHLGNAQYHVFAHGQELELGQSP--- 79 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 I+G + + +Q A + L + D + Y +PF Sbjct: 80 -TIHGLTRQDFLHSSEPKQTFA----MLSRALNDAVLVCHHKGMDWRFLKHIEAQYGIPF 134 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDP-----TELEGLDAVAERLGVPVVNRHSAIGDA 169 PL + D A+ KL +P L A +R +P + H A+ D Sbjct: 135 KPLAIF--------DTLAFEKHKLERNPHQPIYGGQLALSACRKRYNLPDYHAHHALTDT 186 Query: 170 AATAFCFDM 178 A A F Sbjct: 187 VACAELFLA 195 >UniRef50_UPI0001B4C718 DNA polymerase III subunit epsilon n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C718 Length = 241 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 46/160 (28%), Gaps = 4/160 (2%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L D ETTG+D + V L+ SL V V A EI+G + Sbjct: 8 PLAAFDTETTGIDVEHDRIVSAALVVQRGAGSLPEVRRWLVSPGIPVPQAATEIHGLTDT 67 Query: 64 GLYREAL-TEQQTAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + RG N FD T++ R+ + + Sbjct: 68 HLQQHGRWPAPVMDEVARALAEQTARGTPVVVMNAPFDLTLLDRELKRHRNATLATYLSL 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 L L+ L + GV + Sbjct: 128 RSLSVLDPRVLDKH--LDRYRKGRRTLTDLCAHYGVELTG 165 >UniRef50_C9PB04 DNA polymerase III epsilon subunit n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PB04_VIBFU Length = 222 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 59/177 (33%), Gaps = 6/177 (3%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYY 61 + L+ +D+ET+GLD + V +G + + + + DP+ + ++ Sbjct: 30 QPLLSLDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQNDPQQVVLHHIM 89 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A A + L+G + + + P P+ Sbjct: 90 PQMQRQGI----PLAQAIELLFTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDLPIVWLD 145 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 A YA + L V +R +P H A+ DA ATA + Sbjct: 146 TL-KIEQAYAQYAPYNMPHSNANDWRLSTVRKRYHLPAYQAHHALSDAIATAELYLA 201 >UniRef50_D1C533 Exonuclease RNase T and DNA polymerase III n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C533_SPHTD Length = 197 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 67/183 (36%), Gaps = 14/183 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ +D ETTGLD A VE+ ++ + V L P+ I+G + Sbjct: 22 RDVLFLDTETTGLD-GQAEIVEIAVV----DAQGTVLLDTLVRPLRPIPPEVQAIHGITD 76 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R + + A ++ R N AFD ++A+ + +P Sbjct: 77 RMVAGAPRWPEVHAELVRLFRERPRA---VVYNAAFDRRVIAQTAQQHCLPPPTAE---- 129 Query: 123 WHHRLADLAAYAAGKLNI-DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 WH + AAYA + + LD A LG+P H A+GDA + Sbjct: 130 WHCAMLRYAAYAGERHPVTGKYRWHRLDRAAAALGIPRPT-HRALGDALVCRGVVAAMAG 188 Query: 182 TAA 184 Sbjct: 189 LGG 191 >UniRef50_UPI0001AEF4FD exonuclease RNase T and DNA polymerase III n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AEF4FD Length = 204 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 77/202 (38%), Gaps = 26/202 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L VD ETTGLD E+ ++ GE+ L ADPKA+EIN Y Sbjct: 9 QSPPLAFVDTETTGLDPFQHDAWEIAVILRKPGETDQESVFYLEPDLINADPKALEINRY 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + E T + ++ L G GSNP FD+ ++A Y P Sbjct: 69 H-ERVKTEDWTWGKPQDVARDLYRLLDGTVLIGSNPPFDADMIANIFGRYYWHPKP---- 123 Query: 121 RVWHHRLADLAAYAAGKL----------------NIDPTELEGLDAVAERLGVPVVN--- 161 WH+R D+A AAG + P ++ +GV Sbjct: 124 --WHYRTIDIAILAAGYRHGQAASGAYGGDFLFPDDYPQLPYSSYGLSRAVGVEPPAKDV 181 Query: 162 RHSAIGDAAATAFCFDMLRHTA 183 H+A+GDA FD + A Sbjct: 182 AHTALGDARWARDVFDAVTGGA 203 >UniRef50_A4C923 Putative DNA polymerase, exonuclease activity n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C923_9GAMM Length = 210 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 57/188 (30%), Gaps = 17/188 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+DLE TGLD V + L ++ + + ++ +G Sbjct: 27 KYLVIDLELTGLDPKVDEIVSLAWLPIEEQRIIVGRSEHFINCEVNELKQSPIFHGIDRF 86 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A E+Q L + N D + ++ + Sbjct: 87 AVKGGV----PLRQALLELQPLLDDHVLVFHNAELDWAFLKAAFQNANL--------LLS 134 Query: 124 HHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM- 178 + D +L E L R +P H+A+ DA ATA F Sbjct: 135 SSVMLDTMKIEYKRLMNQGHEIASDDLNLARCRSRYQLPEYLTHNALTDALATAELFLAQ 194 Query: 179 LRHTAAAH 186 L A A Sbjct: 195 LNQIAGAK 202 >UniRef50_D1W3Q1 DNA polymerase III subunit epsilon domain protein n=36 Tax=Bacteroidetes RepID=D1W3Q1_9BACT Length = 194 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 14/170 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K +D ET + + VG++ V+ G+ H+ P+ + ++G Sbjct: 31 KDFAAIDFET--ANSCRSSVCSVGVVIVENGKITDSYYHLIRPYPNYYHPRNIAVHGILP 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 W ++ ++ N AFD + + TY M + Sbjct: 89 SDTQDA----PTFPEVWAQIAPLIKHLPLVAHNKAFDESCLKACFATYGMAYL------- 137 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 ++ + L VA LG +VN H A+ DA A Sbjct: 138 -NYPFYCTLIASRRVFCHHELANHQLHTVAAHLGYNLVNHHHALADAEAC 186 >UniRef50_D2VB97 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VB97_NAEGR Length = 302 Score = 116 bits (292), Expect = 3e-25, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 12/188 (6%) Query: 2 AKQL--IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 + + +V+D+E T + +EV + G S+ + + EI Sbjct: 76 SPRYNVVVLDIEGTSTNTSYCRMIEVACARIVDGTSISSFTSLVNADIDYIPEPVQEITK 135 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRG--NTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 + + + Q ++ ++L + G N FD++++ + V Y + + + Sbjct: 136 ITKAMI--DLSPPPQI--VLSQLYNFLSSQPSLVVGHNVRFDASVIYNEFVRYKIINNEV 191 Query: 118 TVGR--VWHHRLA-DLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATA 173 + H L + L + E LG+ N H A D + T Sbjct: 192 HKPDDFISHSLFTNTLCTLKLARRLFQGQPDYKLGNLVENLGLGRSINAHRAHADVSMTT 251 Query: 174 FCFDMLRH 181 + + Sbjct: 252 LLWRRIYR 259 >UniRef50_B8J155 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J155_DESDA Length = 176 Score = 116 bits (292), Expect = 4e-25, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 21/176 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ET+G Y VGL ++ G ++ + ++ EI+G L Sbjct: 10 VAIDFETSG--YAAHSACAVGLARIEDGRVT--EQFYSLVRPPSSRVLFTEIHGLTWPML 65 Query: 66 YREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 W +++ +++G N +FD ++ Sbjct: 66 KNA----PVFGDVWPQMESFMKGAGVLLAHNASFDRRVLLACCREAGAGVPEQHF----- 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + ++ + L+ V E G+ + + H A DAAA A + LR Sbjct: 117 -----LCTLKGARRSLP-LPSKKLNHVCEHFGIALEHHH-AGSDAAACAEVYLHLR 165 >UniRef50_A9KDF1 Ribonuclease T n=5 Tax=Coxiella burnetii RepID=A9KDF1_COXBN Length = 224 Score = 116 bits (292), Expect = 4e-25, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 24/196 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLY------FVPHITVEQLAAADPKAMEING 59 +VVD+ET GL+ +E+ + V+ + F H+ + AA DP ++EI Sbjct: 21 VVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEITR 80 Query: 60 YYERGLYREALTEQQTAVAWGEVQDW------LRGNTFAGSNPAFDSTIVARQRVTYSMP 113 +R A+ E++ + R G N FD T + + Sbjct: 81 IDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKLK 140 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAA 171 SP + D A AA L +P HSAI DA Sbjct: 141 KSPFHAFTCF-----DTATLAAIVF-----GKTVLAKALRAANLPFDKKEAHSAIYDAKC 190 Query: 172 TAFCFDMLRHTAAAHL 187 A F + + HL Sbjct: 191 AAELFCKITNQIDGHL 206 >UniRef50_C1XFI0 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XFI0_MEIRU Length = 200 Score = 116 bits (292), Expect = 4e-25, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 21/189 (11%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESL---YFVPHITVEQLAAADPKAMEINGYYER 63 +DLET+GL+ + VG++ + G ++ + + A + ++ + Sbjct: 18 ALDLETSGLEPS-DQILSVGMVPIRGGVIEFGAHYYSLVRPVRPQALSVEGIQAHHILPS 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A E++ + + + D + + + T P+ V Sbjct: 77 ELEAA----PPLAQVLDEMEQRIGQDVLILHFSSIDLSFLRQSYKTLGRPWPKPLV---- 128 Query: 124 HHRLADLAAYAAGKLNIDPTELEG------LDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + A E L A G+P H A+ DA ATA F Sbjct: 129 ---VDTAVLLARLNERKRWLEPHSQPYPGALGAARATFGLPGHLEHHALWDALATAELFL 185 Query: 178 MLRHTAAAH 186 +LRH AH Sbjct: 186 VLRHRLQAH 194 >UniRef50_Q03AH5 DNA polymerase III, epsilon subunit related 3'-5' exonuclease n=54 Tax=Lactobacillales RepID=Q03AH5_LACC3 Length = 180 Score = 116 bits (291), Expect = 4e-25, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 18/176 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D ET + A + L+ V + + + + D + + I+G Sbjct: 2 DFIAMDFET--ANRKRASACSLALVVVQQNKVVD-SFYTLINPQMQFDAQNIHIHGITPE 58 Query: 64 GLYREALTEQQTAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + W +Q + G N FD +++ Y + V Sbjct: 59 MVQD----QPTFDQVWPHIQMFYTPGRIVTAHNAPFDVSVMRLTLDRYGIAAPRYQV--- 111 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + LD V+ L +P+ + H+A+ D+ A A Sbjct: 112 -------IDTVKTSRQFLPKLPNHRLDTVSAALHIPLEHHHNALADSYACARILIA 160 >UniRef50_Q10MN9 Os03g0301400 protein n=4 Tax=Poaceae RepID=Q10MN9_ORYSJ Length = 313 Score = 116 bits (291), Expect = 4e-25, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 53/188 (28%), Gaps = 24/188 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++V D+ETTG +E + ++ G++ I E+ ++G Sbjct: 112 TILVFDIETTGFSRRYERIIEFAVRDLMGGKNSTIQTLINPEREIK----NAYVHGISSS 167 Query: 64 GLYREALTEQQTAVAWGEVQDWL-----RGNTF--AGSNPA-FDSTIVARQRVTYSMPFS 115 + + + + ++ N FD + + + Sbjct: 168 MVCK--PDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMP 225 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDP--TELEGLDAVAERLGVPVVN-RHSAIGDAAAT 172 D A + D + LD + E +P+ H A+ D Sbjct: 226 G-------DWLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVITL 278 Query: 173 AFCFDMLR 180 + L Sbjct: 279 CYVLQKLT 286 >UniRef50_B9F7W0 Putative uncharacterized protein n=3 Tax=Poaceae RepID=B9F7W0_ORYSJ Length = 901 Score = 116 bits (291), Expect = 4e-25, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 53/188 (28%), Gaps = 24/188 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++V D+ETTG +E + ++ G++ I E+ ++G Sbjct: 700 TILVFDIETTGFSRRYERIIEFAVRDLMGGKNSTIQTLINPEREIK----NAYVHGISSS 755 Query: 64 GLYREALTEQQTAVAWGEVQDWL-----RGNTF--AGSNPA-FDSTIVARQRVTYSMPFS 115 + + + + ++ N FD + + + Sbjct: 756 MVCK--PDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMP 813 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDP--TELEGLDAVAERLGVPVVN-RHSAIGDAAAT 172 D A + D + LD + E +P+ H A+ D Sbjct: 814 G-------DWLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVITL 866 Query: 173 AFCFDMLR 180 + L Sbjct: 867 CYVLQKLT 874 >UniRef50_B9JXT6 DNA polymerase III epsilon subunit-like 3-5 exonuclease n=8 Tax=Rhizobium/Agrobacterium group RepID=B9JXT6_AGRVS Length = 207 Score = 116 bits (291), Expect = 4e-25, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 56/183 (30%), Gaps = 17/183 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++I +D ET + + VGL V+ G+ + + + + I+G Sbjct: 7 PKIIAIDFET--ANEERGSACSVGLAFVENGQVVRVEERLIRPKTMRFSSFNIAIHGIRP 64 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + E D G N AFD ++ Y P+ L+ Sbjct: 65 DHVEDAG----EFPEVMDEFADDFSGAMVVAHNAAFDLSVWRASCDLYRQPYPSLSYV-- 118 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + L+ +A L + H+A DA+ A + Sbjct: 119 --------CSVKLAQKVWPQLPSHRLNVLAAHLQLS-FRHHNAAEDASVCAQAVIAMMER 169 Query: 183 AAA 185 A Sbjct: 170 RGA 172 >UniRef50_Q7NC15 PolC n=1 Tax=Mycoplasma gallisepticum RepID=Q7NC15_MYCGA Length = 1501 Score = 115 bits (290), Expect = 5e-25, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 59/189 (31%), Gaps = 28/189 (14%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP--HITVEQLAAAD-------PKAM 55 ++ D+ETTGL+ +E+ + V ++ + + + Sbjct: 417 FVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEFVQIGKFEKLIKNKKPLSKFTT 476 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWL-RGNTFAGSN-PAFDSTIVARQRVTYSMP 113 ++ G + L Q E +++ + + N FD + + Y + Sbjct: 477 QLTGLKDSDLKDA----QDEKTVLEEFVNFIQKDDVLVAHNGIDFDFIWINTKLDKYKLK 532 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAA 171 + + L L + + L+ ++ +LG H A D Sbjct: 533 -------PLDNPMLDSL----RLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTEL 581 Query: 172 TAFCFDMLR 180 A C ++ Sbjct: 582 LAKCLMIML 590 >UniRef50_B0UJH8 Exonuclease RNase T and DNA polymerase III n=2 Tax=Methylobacterium RepID=B0UJH8_METS4 Length = 222 Score = 115 bits (290), Expect = 5e-25, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 21/186 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVD-----TGESLYFVPHITVEQLAAADPKAMEIN 58 +L+ VD+ETTGL + V G + +D G + H+ + + P+A ++ Sbjct: 21 RLLAVDVETTGLGAE-DRVVSFGAVLLDTATLLGGSPVLACHHLIFDPGRPSHPRAEAVH 79 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 GY + L + + + N AFD +AR+ P Sbjct: 80 GYDDWLLRHQDPARGHLDAVAALLA---GADLVVAHNAAFDLGFLAREFRAAGRPDPA-- 134 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFD 177 + AY LDAV R+ + RH A+ DA + Sbjct: 135 -----RPTYCTMEAYRR----RGEPGSSALDAVCRRVKLARAGARHGALEDAWLALRVYL 185 Query: 178 MLRHTA 183 L+ Sbjct: 186 WLQGCP 191 >UniRef50_A1TI45 DNA-directed DNA polymerase n=4 Tax=Burkholderiales RepID=A1TI45_ACIAC Length = 221 Score = 115 bits (290), Expect = 5e-25, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 18/166 (10%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ V+D ETTG+ A EV ++ ++ G + + A P +++ G Sbjct: 1 MPSRIAVIDFETTGMTPSQGARATEVAIVLMEEGRPVDRFQSLMRT-GAWLPPFIIQLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L T E ++ N +FDS A + +P Sbjct: 60 ITPAMLD----TAPPAESVMREAARFVGDAPMVAHNASFDSRFWAAELARADLPAP---- 111 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HS 164 H A + + L + LG+P R H Sbjct: 112 -----HAFACTVLLS--RRLYPEAASHQLGRIVAHLGLPPAARAHR 150 >UniRef50_A9RDT8 Predicted protein n=6 Tax=Eukaryota RepID=A9RDT8_PHYPA Length = 1960 Score = 115 bits (290), Expect = 6e-25, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 23/190 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +IV D+ETTG + VE+ ++ G+ + Q + ++ Sbjct: 249 PTIIVFDIETTGFLKPGSKIVELACRDIAGGDCSTLETLVNPYQPVPI--ASTAVHKITS 306 Query: 63 RGLYREALTEQQTAVAWGEVQDWLR-------GNTFAGSNP-AFDSTIVARQRVTYSMPF 114 + R+ D++ N FD + ++ SM Sbjct: 307 EMVNRD--DIPSWTEVMTAFVDFVESRRIGNSDVILVAHNGRRFDVPFIMKECYECSMEI 364 Query: 115 SPLTVGRVWHHRLADLAAYAAG--KLNIDPTELEGLDAV-AERLGVP-VVNRHSAIGDAA 170 H D A K T+L L + + +P + + H A D Sbjct: 365 P-------SHWYFIDTIDLAKAMLKKRFGKTKLYNLQFLYYDCYKLPRLEDAHRAGVDVD 417 Query: 171 ATAFCFDMLR 180 A F L Sbjct: 418 MLASVFGKLL 427 >UniRef50_Q6LGI0 Putative DNA polymerase III n=1 Tax=Photobacterium profundum RepID=Q6LGI0_PHOPR Length = 236 Score = 115 bits (290), Expect = 6e-25, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 9/174 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ETTGL+ + +G++N+ T L I + ++ +IN + Sbjct: 51 FVAIDFETTGLNCQQDKILSIGVVNLTTDMIELASSEEIYIRHGEFIKAESAQINEITPK 110 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L++ A + + ++G + + L + Sbjct: 111 QLHKGV----DIDTAIDWLLERIQGKIVLAHCANIEKQFIESYLK----DTYQLNTFPCY 162 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L + + + LD + + +P HSA DA A A F Sbjct: 163 FIDTLQLEKHHSYAGKSNQHTSYQLDDLRQYHNLPAYYSHSAASDAVACAELFL 216 >UniRef50_UPI0001BC4EA4 exonuclease n=4 Tax=Fusobacterium RepID=UPI0001BC4EA4 Length = 186 Score = 115 bits (289), Expect = 7e-25, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 12/182 (6%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYERGLY 66 +D ETTGL Y + +++ + GE + + +A+ I + ++ Sbjct: 6 LDTETTGLTY-RSTIIQLAAIVEIDGEIKETINLYCAPFPDSDISEEALSITKFTREEIF 64 Query: 67 REALTE---QQTAVAWGEVQD-WLRGN--TFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + Q G+ D + + + G N FD ++ + F + Sbjct: 65 QFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERFIASYID 124 Query: 121 RVWHHRLADLAAYAAGKLN--IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + LA K+ + TE L+ + + +P+ N H+A+ D A + Sbjct: 125 --FKNEFDTLAFTKCLKILGRLPQTENNKLETLCQAFQIPLENAHNALADTIAAKDLYHY 182 Query: 179 LR 180 L+ Sbjct: 183 LQ 184 >UniRef50_B5JTW6 Exonuclease, RNase T and DNA polymerase III n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW6_9GAMM Length = 238 Score = 115 bits (289), Expect = 7e-25, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 51/178 (28%), Gaps = 8/178 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D+ETTGL+ + V +GL+ D + ++ ++G Sbjct: 49 PCLAIDIETTGLNAERDKIVSIGLVEFDASRVYLASAKHWLVNPGELSDSSVIVHGITHS 108 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTI---VARQRVTYSMPFSPLTVG 120 + R E+ + G A + + + F + Sbjct: 109 DVSRA----PTIDAVIPELLRAMAGRLSVVHYRAMEREFFRMLGFSLWSQPWLFPVIDTF 164 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L + + L R +P H A+ DA ATA Sbjct: 165 ALETTCLKQSQGW-FDRFRNKSLPSLRLPDARLRYHLPEYENHDALVDAIATAELLQA 221 >UniRef50_A1Y2U5 Transposase n=2 Tax=Bacteria RepID=A1Y2U5_9BACT Length = 275 Score = 115 bits (289), Expect = 7e-25, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 12/177 (6%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IV+D ETTGL D A E+ +L+V L + + +A I+ + + Sbjct: 87 IVLDTETTGLG-DDAEICEITILDVTGAPILD--TLVRPTRPIPV--EATAIHKITDAMV 141 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + G T N AFD+ ++ + + + LT Sbjct: 142 A----SAPSWPEVAEQYAAAVAGRTVVAYNVAFDARLLRQTYQIHGITAPVLTTAC---A 194 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + D L A GV H A+ DA T L+ Sbjct: 195 MLMYAEWHGEYDRSRDRWRWLKLIEAATDCGVAEDGAHRALADARMTLGVLRYLQRR 251 >UniRef50_C6XW17 Exonuclease RNase T and DNA polymerase III n=74 Tax=cellular organisms RepID=C6XW17_PEDHD Length = 328 Score = 115 bits (288), Expect = 9e-25, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 61/183 (33%), Gaps = 21/183 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLN-VDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + L DLETTG++ VE+ +L + G L I E A I+G Y Sbjct: 7 RPLAFFDLETTGVNVGADRIVEIAILKAMPDGSELIKTMRINPEMPIPL--YASLIHGIY 64 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVG 120 + + E E+ D++ AG N FD ++ + + + F Sbjct: 65 DEHIANE----PIFKEVATELADFIGDADLAGYNSNRFDIPVLLEEFLRAGVDF------ 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDML 179 + + D+ E L A + ++N HSA D AT Sbjct: 115 DMSDRKFVDVQNI------FHQMEQRTLRAAYKFYCNKDIINAHSAEADITATYQVLLAQ 168 Query: 180 RHT 182 Sbjct: 169 IER 171 >UniRef50_C2S1I6 DnaQ family exonuclease/DinG family helicase n=3 Tax=Bacillales RepID=C2S1I6_BACCE Length = 99 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 9/105 (8%) Query: 1 MAKQLIVVDLETTGLDYD--TALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEI 57 M+K+ +VVDLETTG + ++ + V+ GE L F I ++ P E+ Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKR--EIPPFITEL 58 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTI 102 G E + + V + L+G F N FD Sbjct: 59 TGIDESMVKQA----PLFEDVAPMVVELLQGAAFVAHNVHFDWNF 99 >UniRef50_Q1PZU3 Strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZU3_9BACT Length = 204 Score = 114 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 17/173 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ET + + +GL ++ + + DP + I+G Sbjct: 4 VAIDFET--ANAKRSSVCSLGLAIIEEQTIVKRTSWLIRPPELYFDPFSTYIHGIS---- 57 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 ++ + + W E+ +L G+ N +FD +++ L V ++ + Sbjct: 58 AKDVEDKPEFYQLWDEIFPFLEGSYLVAHNASFDMSVL----------CCILDVYKIPYP 107 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L A K L+ ++ L + H A DA A A Sbjct: 108 PLNYFCTLAIAKRVWPGLLGYALNKISRYLEIE-FKHHDAEEDAVACAKILLH 159 >UniRef50_A9VZJ3 Exonuclease RNase T and DNA polymerase III n=7 Tax=Alphaproteobacteria RepID=A9VZJ3_METEP Length = 297 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 17/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ +D ET + VGL ++ G + + P + ++G Sbjct: 2 KVVAIDFET--ANERRDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGILP- 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E L G N FD ++A + P Sbjct: 59 ---ADVRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPV--------- 106 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +A + GL VA RLG+ H A DA A A H Sbjct: 107 -PDMAGHCTLQIARRVFPDPAGHGLAKVAGRLGI-RFEHHDAGEDAFACAEIALAALHET 164 Query: 184 AAH 186 A Sbjct: 165 GAA 167 >UniRef50_Q2RWQ8 Exonuclease n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RWQ8_RHORT Length = 209 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 13/185 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYE 62 +++ VD ETTGLD + + + V L V + A+ I+ E Sbjct: 30 EVVSVDCETTGLDRHNDDIITLAAVRVRGNRVLTSQKLDLVVKPSRPIRRDAVCIHHLRE 89 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLTV 119 + + R A + G FD ++ R +P + V Sbjct: 90 QDVERGLAPR----EAVARFLRFAGSRPLIGYYLEFDVALIDRLVRPWLGIGLPNPRIEV 145 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +++ + T + E L +P ++ H A DA T+ + L Sbjct: 146 SEMFYDW-----RTRGREELYTGTVDLRFATILEALDIPPLHNHDAFEDAVMTSLAYLKL 200 Query: 180 RHTAA 184 R A Sbjct: 201 RARAG 205 >UniRef50_Q7MCI1 DNA polymerase III, epsilon subunit n=6 Tax=Vibrio RepID=Q7MCI1_VIBVY Length = 239 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 13/176 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ETTGLD + +G++++ G +L I + A ++ ING + Sbjct: 53 FLALDFETTGLDAKHDKILSIGMVDLTLEGINLSSAEEILLNHGAYIKAESARINGLTPQ 112 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + +G + + + + + ++ Sbjct: 113 ALEQGC----SLEQGMMRLFERAQGKVLLAHSAIIEQGFLQAFAQQH------FQLAKLP 162 Query: 124 HHRLADLAAYAA--GKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 H + L LD + +P + HSA DA A A F Sbjct: 163 CHFVDTLQIEKRFSYAGKSGQRSSFQLDDLRRCYHLPDYHSHSAASDALACAELFI 218 >UniRef50_D2B9E4 DNA-directed DNA polymerase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B9E4_STRRD Length = 189 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 22/155 (14%) Query: 8 VDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 VD+ETTG E+ L+++D + H V+ A+ ++G E + Sbjct: 2 VDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSLVDP--RRGTGAVHVHGITEAMVE 59 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 EV + G N +FD + V H Sbjct: 60 GA----PVIEEVLDEVWQRIAGRVLVAHNVSFDLRFLK--------------VLPGSHWL 101 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 L ++ P L A +R G+P N Sbjct: 102 TEALCTQQLA-PDLIPGGKWTLGACCQRAGIPFSN 135 >UniRef50_A0JYL8 DNA polymerase III, epsilon subunit n=8 Tax=Micrococcaceae RepID=A0JYL8_ARTS2 Length = 254 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 62/182 (34%), Gaps = 12/182 (6%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + DLETTG + A V + VD S+ + +A E++G Sbjct: 25 RPRAAFDLETTGRNSRAARIVTASVTVVDADGSVITEHEWLADPGIEIPAEASEVHGVTT 84 Query: 63 RGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + V + G N ++D T++A + Y +P Sbjct: 85 ERARLEGRPAAEVTRELASVLQGLFDDGIPVIAFNASYDFTVLAAESARYGIPQL----- 139 Query: 121 RVWHHRLADLAAYAAGK-LNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +R L Y K ++ L A+ E V + N H++ DA AT D + Sbjct: 140 ----NRFPVLDPYIMNKQVDRFRKGKRTLTALCEEYKVNLDNAHTSAADALATLRMLDAM 195 Query: 180 RH 181 Sbjct: 196 AG 197 >UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group RepID=Q3B5G9_PELLD Length = 197 Score = 113 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 67/190 (35%), Gaps = 17/190 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 K+++ DLETTG+D D ++ L G F + + A + +A+ ++G+ Sbjct: 2 KKVLWFDLETTGIDPDRHGIIQFAGLAEIEGVVAESFEIKMQPHEGAMIEDEALAVSGFS 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNT----------FAGSNPAFDSTIVARQRVTYS 111 + + A A+ + +L + AG N FD ++R Y Sbjct: 62 REQIA----SFTPHAEAYKAIDGFLARHVSRFERNDKFYPAGYNVRFDLDFLSRMFRRYD 117 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 L W + L V E LGV + N H A+ D A Sbjct: 118 Q--YGLGSFINWRSLDPQPILNIMEYMGRLSLPNHKLQTVCEHLGVRLENAHDALSDIKA 175 Query: 172 TAFCFDMLRH 181 T ++L Sbjct: 176 TRELMELLME 185 >UniRef50_Q04A97 DNA polymerase III, epsilon subunit related 3'-5' exonuclease n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q04A97_LACDB Length = 261 Score = 113 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 59/178 (33%), Gaps = 21/178 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V DLETTG +++G L V +++ V L + + G Sbjct: 7 DYTVFDLETTG-----KKIIQIGALKVRDDQTV-AKFSTYVNPLEKINDYVSHLTGISNY 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRV 122 + D++ +T G N +FD ++A Y + L + Sbjct: 61 QTDAA----PLIDEVMPDFLDFVGDDTLVGHNILSFDCNVLADN--GYPVANPKLDTLLL 114 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +Y L DP L + E G+ + N H AI D + LR Sbjct: 115 AN-------SYKKRGLFADPIPNVRLSTMKEYYGINI-NSHIAISDCITNNIVYQKLR 164 >UniRef50_C1DKH9 DNA polymerase III, epsilon subunit n=17 Tax=Pseudomonadaceae RepID=C1DKH9_AZOVD Length = 240 Score = 113 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 13/164 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGY 60 A++ +V+DLETTGL+ + + + +G + ++ T+ + + +++ I+G Sbjct: 41 AQRFVVLDLETTGLNVERDVVLSIGAVLIENDAIDLSRQFECTLRRRLKSVTESVLIHGI 100 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A A ++ F + FD ++ R +G Sbjct: 101 APSALAVGTAP----AEALLRFMEYAGDCVFLAFHAPFDQRMLGRALK--------DELG 148 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 H D+A A GLD + G+ + RH Sbjct: 149 YRLRHPFLDVADLAPMLFPEALVHPGGLDQWIQYFGLDMSRRHH 192 >UniRef50_A1WUZ8 Ribonuclease T n=10 Tax=Gammaproteobacteria RepID=A1WUZ8_HALHL Length = 226 Score = 113 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 68/196 (34%), Gaps = 25/196 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESL-------YFVPHITVEQLAAADPKAMEIN 58 +VVD+ET GL +T +++ + + E H+ + A DPKA+E+N Sbjct: 34 VVVDVETGGLQAETDALLQIAAVILRAEEGTGRLYPAETHTCHVQPFEGARIDPKALELN 93 Query: 59 GYYERGLYREALTEQQ-----TAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSM 112 G R A+ E+ E+++ G N FD + Sbjct: 94 GIDPEHPLRMAVPERDALGKMFNPVRQELRNTGCNRAVLVGHNAFFDLAFLNAAVTRTGF 153 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAA 170 +P H + G L T L + G+ HSAI DA Sbjct: 154 KRNPF-------HPFSSFDTATLGGLAYGQTV---LAKAVKAAGIEWDAKEAHSAIYDAE 203 Query: 171 ATAFCFDMLRHTAAAH 186 TA F + + AH Sbjct: 204 KTAELFCAIVNCWDAH 219 >UniRef50_C2KP37 DNA polymerase III epsilon subunit n=3 Tax=Mobiluncus RepID=C2KP37_9ACTO Length = 258 Score = 113 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 56/182 (30%), Gaps = 7/182 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + D ETTG+ L+ GE + + KA E+NG + Sbjct: 33 EWLGFDTETTGVWVRRDRIATASLIRRVGGE--DTAYNWVINPGVPMPVKASEVNGLTDE 90 Query: 64 GLYREAL-TEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + A E+ + G G N AFD I+ + Y +P +G Sbjct: 91 YLEKHGEQPAVALAEIASELAAAMSSGVPVVGFNVAFDFEILEAELARYELPTLRARLGG 150 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 + L L+ L V E G+ H A D AT + Sbjct: 151 RIAPVIDPLVLDRT--LDRYRRGKRKLATVCEAYGLDGNRAFHQADSDVTATLDLLGAMI 208 Query: 181 HT 182 Sbjct: 209 ER 210 >UniRef50_C5YG62 Putative uncharacterized protein Sb06g028980 n=1 Tax=Sorghum bicolor RepID=C5YG62_SORBI Length = 283 Score = 113 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 57/190 (30%), Gaps = 21/190 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +V DLETTG + VE L ++ G+ F I E+ A E+N Sbjct: 81 QPGTFLVFDLETTGFFHVDNRIVEFALRDLSGGKDCTFQTLINPERDVPI--YASELNNI 138 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGN------TF-AGSNP-AFDSTIVARQRVTYSM 112 + R + + + ++R N FD + ++ S Sbjct: 139 TTELVCR--PDVPRFSDVLPILLAYVRSRQAPGKPVLWIAHNAKGFDVPFLNQEFDRCSA 196 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELE-GLDAVAERLGVPVVNR-HSAIGDAA 170 D A ID + L A+ ER G+ H A+ D Sbjct: 197 QVP-------SDWLFVDSLRLARKLKKIDGKKNLVNLVALGERYGLSSEGPSHRAMPDVE 249 Query: 171 ATAFCFDMLR 180 A + Sbjct: 250 ALCNILPKIT 259 >UniRef50_A4B9Q7 Putative DNA polymerase, exonuclease activity n=1 Tax=Reinekea blandensis MED297 RepID=A4B9Q7_9GAMM Length = 192 Score = 113 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 26/188 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL----AAADPKAMEING 59 +++V+DLE TGL+ + G + ++ G + Q A+ + I+ Sbjct: 16 RVLVLDLEMTGLNAQEDSIISAGWVVIEQGRIELSLAGHQYFQPTAMMASDVSASAHIHM 75 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTF----AGSNPAFDSTIVARQRVTYSMPFS 115 + L ++ G L G+ + D + + Sbjct: 76 ITDHLLEQQGQP-------LGHWLQRLNGDLLADRWVFHHAPIDMAFLKMFSQRLDIVLP 128 Query: 116 PL---TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + + R +DL + +L L A R +P +H A+ DA AT Sbjct: 129 SVTIEDTVLLEQKRFSDLTLESQQQL--------SLTACRARHRLPAYRQHHALSDALAT 180 Query: 173 AFCFDMLR 180 A + L Sbjct: 181 AELYLALM 188 >UniRef50_UPI000185C325 putative DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C325 Length = 545 Score = 113 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 54/185 (29%), Gaps = 18/185 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYY 61 D+ET + DT +++G+ V G+ + L D + I+G Sbjct: 165 PFAAFDVET--ANEDTGSIIQLGVAVVRGGKVTERYSWMCRPPKGLEYFDEANVAIHGIT 222 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E + D + N FD T ++R +P L Sbjct: 223 ----AADVAGEPSFPEQLAKFVDVVGDLDVVAHNARFDFTALSRACRAEGIPAPKLNFA- 277 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 Y + L +AE G + N H A DA A A L Sbjct: 278 ---------CTYMWARQMQLGLPNLKLPTLAEAAGASLENHHDATADAVACAEVALWLME 328 Query: 182 TAAAH 186 A Sbjct: 329 QQRAT 333 >UniRef50_C0GGY8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGY8_9FIRM Length = 198 Score = 113 bits (284), Expect = 3e-24, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 49/177 (27%), Gaps = 26/177 (14%) Query: 6 IVVDLETTGLDYDTALPVEVG----LLNVDTGESLYFVPHI--TVEQLAAADPKAMEING 59 VD+ETTGL VE+ D+GE V E P A ++G Sbjct: 13 CFVDVETTGLSPRKEEIVELAICLFAYRRDSGEITRIVDRYVGQREPGVPVSPGAARVHG 72 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + L + +++ N +FD VAR Sbjct: 73 LRMADLRGKQLDTARIEAILHS-AEFI-----VAHNASFDRGFVARLFPVSG-------- 118 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 R L + + GL + + H A D AT Sbjct: 119 ------RKQWLCSMSGIDWKGKGFPSRGLQNLLRAHRIDAGRAHRAEDDVLATLKLL 169 >UniRef50_C4LI81 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI81_CORK4 Length = 555 Score = 113 bits (283), Expect = 4e-24, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 46/182 (25%), Gaps = 20/182 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA--AADPKAMEINGYYE 62 I D+ET + + G++ G+ + A P I+G Sbjct: 223 FIAFDVET--ANEANGSICQFGVVVYHEGKEAESHTWLCQPPSAWPDFTPATTAIHGITP 280 Query: 63 RGLYREALTEQQTAVAWGEVQDWLR--GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + E ++ LR N FD + + +T Sbjct: 281 DKVANE----PSCHDRLEQLAALLRKENLPIVAHNAKFDMVALRDAARAEKVDIPHITFA 336 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 Y + L VA+ G + H A+ DA A L Sbjct: 337 ----------CTYLLARALHPELPNYKLTTVAQSAGSEAFHHHDALADARACGEIMLSLC 386 Query: 181 HT 182 Sbjct: 387 GI 388 >UniRef50_Q4ZCJ2 ORF013 n=5 Tax=root RepID=Q4ZCJ2_9CAUD Length = 306 Score = 113 bits (283), Expect = 4e-24, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 20/185 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 + +D+ET + + + LL + HI E ++ + I+G E Sbjct: 2 DFVAIDVET--ANEQRSSICSIALLKFQDNKMRDAIYTHINPETYFSSINTS--IHGISE 57 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + +L + N +FD + Y++P Sbjct: 58 E----DVMDSPKMYQMHEAIIRFLDNHIIVAHNTSFDMYALCDSFKKYNLPLP------- 106 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + Y K ++ L +AE + H+A DA A + Sbjct: 107 SNQYFCT---YRLSK-DLYNLPSYRLQDLAEHFDIKNEEYHNAFYDAKVCAKIAYNILKD 162 Query: 183 AAAHL 187 A+L Sbjct: 163 QDANL 167 >UniRef50_UPI0001C31300 Exonuclease RNase T and DNA polymerase III n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31300 Length = 259 Score = 112 bits (282), Expect = 5e-24, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 49/164 (29%), Gaps = 4/164 (2%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++L D+ETTG+D + V +++ V+ A ++G Sbjct: 2 RRLAAFDIETTGIDPQSDRIVT-AAVSLAGDARPTVDHDWLVDPGVEIPAGATAVHGITT 60 Query: 63 RGLYREALTEQQTAVAWGEVQ--DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + V L N FD T + R+ + + VG Sbjct: 61 DHARAEGRASAEAVEEITAVLAAQLLDHVPVIAFNARFDLTCLDREARRHGVVPLVDRVG 120 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + D + + L AV E V + H+ Sbjct: 121 GPDGLIVVDPFVLDK-QFDRYRRGKRTLGAVCEHYRVRLDAAHT 163 >UniRef50_B4VF18 DNA polymerase III subunit epsilon n=9 Tax=Streptomyces RepID=B4VF18_9ACTO Length = 246 Score = 112 bits (282), Expect = 5e-24, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 4/157 (2%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 L+ DLETTG + + V ++ V GE + +A I+G Sbjct: 9 LVGFDLETTGTEPGESRIVTAAVVEVRGGEVRERRG-WLADPGIPIPEQASAIHGISTAR 67 Query: 65 LYREALTEQQTA-VAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 E ++ A + + W RG N AFD T+++ + + +P +G Sbjct: 68 AVAEGRPVREVAQEVAAALVEHWRRGAVVVAYNAAFDLTLLSAELARHGLPSLSDRLGGA 127 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV 159 + D ++ L+AV GV + Sbjct: 128 PTGPVVDPLTIDRA-VDRYRRGKRTLEAVCGVYGVTL 163 >UniRef50_Q6MC14 Putative DNA polymerase III, epsilon chain, mutD n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MC14_PARUW Length = 216 Score = 112 bits (282), Expect = 5e-24, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 41/161 (25%), Gaps = 21/161 (13%) Query: 23 VEVGLL-NVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGE 81 +E+ V F + P++ I+ + + A E Sbjct: 2 IEIAAYDPVQNRR---FEKFV--HPGFPIPPESTAIHHITDEMVANAG----SFADVGAE 52 Query: 82 VQDWLRG-NTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLN 139 ++ G N FD + + + H + D + + Sbjct: 53 FVEFCAGEVVLIAHNNDNFDLHFLRHEFERNQLILPT-------HWKFLD--SLKWARRY 103 Query: 140 IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + E G+ N H A+ D F + Sbjct: 104 RSDLPRHTLQFLREIYGITANNAHRALDDVIVLERVFRSMV 144 >UniRef50_A6GP03 Exonuclease n=1 Tax=Limnobacter sp. MED105 RepID=A6GP03_9BURK Length = 244 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 65/191 (34%), Gaps = 29/191 (15%) Query: 4 QLIVVDLETTGLDYDTALPVEVGL--LNVDTGESLYFVPHITVEQLAAADPKA------- 54 + +V+D+E++GL+ + V + D T E + P+ Sbjct: 36 RWVVLDVESSGLNPKKDRLISVAATAIVFDAQRRPRISLTDTFEVVIKQPPEIVDMIEFE 95 Query: 55 ------MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV 108 + I+G G ++ + + VA E ++ + + FD ++ + Sbjct: 96 AIDKNNILIHGIGI-GAQQKGV---KAEVALSEFLRYVGHSPLIAFHSWFDEILINKALR 151 Query: 109 TYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 +GR H DL AA + LD +R G+ RH A D Sbjct: 152 KV--------LGRTTHRHWLDLEHLAA--VLHKENHQLPLDVWMQRYGIECEQRHQAAAD 201 Query: 169 AAATAFCFDML 179 ATA L Sbjct: 202 VLATAQLLMKL 212 >UniRef50_A6VT55 Exonuclease RNase T and DNA polymerase III n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VT55_MARMS Length = 220 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 18/170 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 +V+D+ET+GLD V G + + G L HI ++ +A ++ I+ + Sbjct: 27 DYLVLDIETSGLDPKQDHIVSFGWVCIHKGVIELDTARHIVLD--SAQIGDSVGIHMITD 84 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + ++ ++ ++ LR + + + T ++P ++ Sbjct: 85 SDVQQQGKKQES---VLRYLRHLLRERVLVMHHAPMELGFLKHAWQTEALPSFSVS---- 137 Query: 123 WHHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGD 168 D A K N L A ER G+P H A+ D Sbjct: 138 ----WLDTLAIERTKANRSQQPIQDGGFRLGACRERYGLPDYQGHDALTD 183 >UniRef50_UPI0001AF0A70 hypothetical protein AbauAB_10367 n=1 Tax=Acinetobacter baumannii AB900 RepID=UPI0001AF0A70 Length = 179 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 59/186 (31%), Gaps = 18/186 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ VD ETTGL+ + +E+ L+ D + ++ DPKA ++G Sbjct: 1 MIPYILGVDTETTGLEVENGDKIIEIALIKYDLDGAKLEEFVQRIDPERNIDPKAQAVHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 L + + EV + N AFD +A + M ++ Sbjct: 61 ISYSDL----IGCPKFVDIAEEVASIVNHASLLVAHNFAFDGPFIATELKRAGMTPKKVS 116 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCF 176 G+ + L + LGV H+A D CF Sbjct: 117 SF----------CTMEYGRWATFDGKYPKLADLCFSLGVEYDASAAHAASYDVDVMMQCF 166 Query: 177 DMLRHT 182 R Sbjct: 167 FKARER 172 >UniRef50_C7RVE9 Exonuclease RNase T and DNA polymerase III n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RVE9_9PROT Length = 469 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 17/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L + LETTG + ++G+L + + + ++ ++NG + Sbjct: 5 RLAFIGLETTGANPLRDRITKIGVLEAEGDRVSTWSTLVNPQRPIP--EFIQQLNGSRDA 62 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A E+ D L G F + F+ V R+ F Sbjct: 63 TVADA----PTFAQVAAELADRLHGRLFIAHHARFNYAFVKREFQRLGKSF--------- 109 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 R L + + L+++ R + A+ A + +L+ Sbjct: 110 --RADVLCTVRLSRKLFPEHQKHHLESLMVRHDLTTGVHSGALAAAHLLGQFWCVLKRER 167 Query: 184 AA 185 Sbjct: 168 GE 169 >UniRef50_UPI0001B53E3D DNA polymerase III subunit epsilon n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B53E3D Length = 282 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 13/182 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L DLET+G+D + V + GE + ++ A ++G Sbjct: 20 RLCAFDLETSGVDVEADRIVTAAAYGLGGGEPVEPHD-WMLDPGVEIPAGATAVHGITTD 78 Query: 64 GLYREALTEQ----QTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E G G N +D T++ R+ Y +P + Sbjct: 79 EARAKGEPAPGGIDHISDVLAEYAR--AGVAVVGHNVPYDFTLLDRECRRYELPTLHDRL 136 Query: 120 GRVWHHRLADLAAYAAG----KLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATA 173 G + + + L +A+ +P H A DA A Sbjct: 137 GETPLYVIDTRVLDQHADPYRRRPSKDQGARQLVTLAQVYELPWDDEGAHGAAYDAVLAA 196 Query: 174 FC 175 Sbjct: 197 RV 198 >UniRef50_C5V7D5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7D5_9PROT Length = 303 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 31/181 (17%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV-------DTGESLYFVPHITVEQLAAADPKAMEIN 58 +VVD ETTG++ +E+G++ + G L + + A P++ E++ Sbjct: 43 VVVDTETTGINSAQDAIIELGMVLFEYDPDTGEAGRVLGSFDQLE-DPGMAIPPESTEVH 101 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + + + + + V +L G + N FD + ++ Sbjct: 102 GITDEMVQGKRIDD-------AAVAAFLDGVSVVIAHNSKFDRVFLEKRLS--------- 145 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L + A + LD ++ + G H A GD A Sbjct: 146 -----VFETLPWGCSLAQVDWRAEGIGSAKLDYISYQYGF-FYEAHRAEGDCYALLEILQ 199 Query: 178 M 178 Sbjct: 200 Q 200 >UniRef50_Q2NHS5 Predicted 3'-5' exonuclease n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NHS5_METST Length = 445 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 23/181 (12%) Query: 3 KQLIVVDLETTGLDY--DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V+DLE + +G++ + + + + D ++I Sbjct: 2 RDYVVMDLE----NPNFRQNSICAIGVMLIRNNNVVERK-YSLINPEDTFDNINIQITKI 56 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W E+ WL N G N +D ++ + Y + Sbjct: 57 APHMIKQ----SPTLPEYWSEISSWLSNNVIVGHNITYDLRVLTKSLQRYDLEVPEFNYC 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + N+D L+ +A++L + + N H+AI DA A F+ + Sbjct: 113 ----------CTLTQSRKNLD-LPSYKLENIAKKLHI-IYNPHNAIEDARAAYELFEYIN 160 Query: 181 H 181 Sbjct: 161 R 161 >UniRef50_UPI000196AD91 hypothetical protein CATMIT_00292 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AD91 Length = 297 Score = 112 bits (280), Expect = 7e-24, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 59/181 (32%), Gaps = 16/181 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M++++ + D+E D + +G++ ++ + + DP +++ Sbjct: 1 MSEKITIFDIEELNNDPVS--VCSIGIVVLEDMKVKETFYSLIRPPKLTFDPYRYKVHKI 58 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + W ++ + + + D + + + + Sbjct: 59 RPQDLKK----QPTFPEIWPKISKYFENSIVISHDIQSDLNHLLAVFRRFRIRKPTCYLS 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 KL + GL ++ + V + N H+A+ D+ A A + Sbjct: 115 ----------CTLVLAKLFHPELQKYGLGSLCDFYSVDLENAHNALADSLACAELLKKMM 164 Query: 181 H 181 Sbjct: 165 E 165 >UniRef50_B9CLN3 Putative exonuclease, RNase T and DNA polymerase III n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLN3_9ACTN Length = 251 Score = 112 bits (280), Expect = 9e-24, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 67/180 (37%), Gaps = 16/180 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A++++ +D ETTGLD +++ + +D F I P A EING Sbjct: 20 AEKILCIDTETTGLDPRKDEIIQLSM--IDGHGKSIFESLICP-PTRKRWPNAQEINGIT 76 Query: 62 ERGLYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + +VQ+ + + G N FD +++ + FS Sbjct: 77 PKMVKGK----PELEEVADQVQEAINAADLIVGYNLPFDISMMEAE----GFDFSDKEQY 128 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +++ K + T L A+ G+ H A DA AT F + Sbjct: 129 DLMEDYAQVFGRWSSAKDDYLWT---KLTTAAKHYGIK-FAAHDAGEDARATIKLFYAML 184 >UniRef50_B9ZRI9 Ribonuclease T n=3 Tax=Gammaproteobacteria RepID=B9ZRI9_9GAMM Length = 228 Score = 111 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 71/201 (35%), Gaps = 25/201 (12%) Query: 1 MAKQL-----IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP------HITVEQLAA 49 MA + +VVD+ET G D ++V + + E+ + V H+ + + Sbjct: 14 MANRFRGFLPVVVDVETGGFDCRRHALLQVAAVFLRRDENDHLVRDRTVSLHVRPYEGSE 73 Query: 50 ADPKAMEINGYYERGLYREALTEQQ-----TAVAWGEV-QDWLRGNTFAGSNPAFDSTIV 103 DPK++E+NG R A E Q + EV + + G N FD V Sbjct: 74 MDPKSLEVNGIDPYHPLRAAYPEDQAMGRLFSEVRREVKINHCKRAILVGHNAHFDLGFV 133 Query: 104 ARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 + +P H + L + L T L A LG H Sbjct: 134 HTAAERCGIKRNPF-------HPFSSLDTVSLAALAFGQTVLARAADAAG-LGWDAEAAH 185 Query: 164 SAIGDAAATAFCFDMLRHTAA 184 SA DA TA F + + Sbjct: 186 SAAFDAEKTADIFCQIANRWQ 206 >UniRef50_A7HF37 Exonuclease RNase T and DNA polymerase III n=10 Tax=Bacteria RepID=A7HF37_ANADF Length = 213 Score = 111 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 55/187 (29%), Gaps = 17/187 (9%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL---AAADPKAMEINGYYER 63 +D+ET GLD + +G++ V G + T+ + ++ + Sbjct: 31 AIDVETGGLDAKRDPLLAIGMVPVRAGRIRLGECYRTLVRPHAGTRITSASVTAHQL--- 87 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + EV+ R + A D + R + + V Sbjct: 88 -VSNDFEAAPPLGDVLPEVERRAREGALLFHHAAIDVAFLRRDFARTGLTWPSCPVVDTA 146 Query: 124 HHRLADLAAYAAGKLNIDPTEL----EGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +L L LG+P H A+ DA ATA F L Sbjct: 147 R------LLVRHAQLRDPTRPRDHIALNLSVARAELGLPEYQAHDALSDAIATAELFLAL 200 Query: 180 RHTAAAH 186 R A Sbjct: 201 RMALGAR 207 >UniRef50_Q4E271 Exonuclease, putative n=1 Tax=Trypanosoma cruzi RepID=Q4E271_TRYCR Length = 223 Score = 111 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 54/226 (23%), Gaps = 62/226 (27%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD-TGESLY------FVPHITVEQLAAADPKAMEIN 58 I VDLETTG V +G + + G +L TV + +A ++ Sbjct: 4 ICVDLETTGFSAQRDDVVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAEAVH 63 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWL-------------------------------- 86 G L + +L Sbjct: 64 GLSFEMLRDA----PPLEDVISDFAAFLIQLDGNLPQSGQTEENYRAKPGDLSAKKRCTA 119 Query: 87 ---RGNTF-----AGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKL 138 G N FD++ + R VW + + Sbjct: 120 ATTAGCVLTLPPVIAHNANFDASFLQRAVSRAGWR-------VVWDEYAPLTCTQSMFR- 171 Query: 139 NIDPTELEGLDAVAERLGVPVVN---RHSAIGDAAATAFCFDMLRH 181 + + L + GV RH A+ DA F L Sbjct: 172 ALYSHQAADLSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRLAE 217 >UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit n=9 Tax=Prevotella RepID=D1PV56_9BACT Length = 287 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 58/183 (31%), Gaps = 24/183 (13%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEING 59 + K LI+ DLETTGLD T +++ + VD G + E+ P E+ Sbjct: 5 LTKPLIIFDLETTGLDLATDRIIQISYIKVDPQGNEERKSLFVNPEKPIP--PFVQELTH 62 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLT 118 + + +Q+ G FAG N FD ++A + + + F Sbjct: 63 ITDDMVKDA----PTFKQIAKSLQETFAGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFQ- 117 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV----PVVNRHSAIGDAAATAF 174 RL D + E L A H A D AT Sbjct: 118 -----RCRLID------AQNIFHKMEPRNLAAAYRFYTGNKMEDDFQAHRADEDTEATYR 166 Query: 175 CFD 177 Sbjct: 167 VLQ 169 >UniRef50_D1BPK1 UvrD/REP helicase n=3 Tax=Veillonella RepID=D1BPK1_VEIPT Length = 862 Score = 110 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 61/175 (34%), Gaps = 13/175 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++V D+E+TG D +++ + +D + ++ E++G+ + Sbjct: 493 EVVVYDVESTGTDTAQDRIIQIAAIRIDEDGQV-LETFERFINPGVPVGQSEEVHGFSDA 551 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ A+ +++ + G N +D TI + +++ Sbjct: 552 YLQEHG---EEPAIVLQAFKEFSKNAIIVGHNVNYDVTIFTNELARHNLGNPEF------ 602 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L Y + L +A + + H+A+ D ATA Sbjct: 603 KAIYDTLDIY---RRFYPNLPNHKLGFLASKFPIHHEPTHNAMDDILATAQLLIY 654 >UniRef50_A0JY37 Exonuclease, RNase T and DNA polymerase III n=4 Tax=Micrococcaceae RepID=A0JY37_ARTS2 Length = 337 Score = 110 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 57/188 (30%), Gaps = 21/188 (11%) Query: 1 MAKQLIVVDLET-TGLDYDTALPVEVGLLNVDTGESLYFVPHIT--VEQLAAADPKAMEI 57 M +D ET G P VGL V G + + E D + I Sbjct: 1 MGLDFTAIDFETANGF---RGSPCAVGLSKVRGGVVVEEASWLMRPPEDHDRFDYHNVRI 57 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + + E+ ++ G+ A N AFD ++ +P Sbjct: 58 HGIRPEDVAG----LPRFGELFPEIGAFIGGDVLAAHNAAFDLGVIRSALEVSGLPG--- 110 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L AE GVP+VN H A DA A A Sbjct: 111 -------PAYDYVCTVMLSRRCYSLV-SNSLPYAAEEAGVPLVNHHDAAEDARACAGILI 162 Query: 178 MLRHTAAA 185 + A Sbjct: 163 DIARRNGA 170 >UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L7M7_NAUPA Length = 293 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 71/181 (39%), Gaps = 14/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++++D ETTG + + +++ L ++ + + V+ +AM ++ Sbjct: 2 KIVILDTETTG-NKEEDRIIQLSYLVLNENLEIEEIHDELVKPPLPISFEAMAVHHITNE 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT---FAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + L + ++ +++ + N FD ++ ++ ++ F + Sbjct: 61 MVEDKPLIKHT--ESYKRLKEL--NSPENLLVIHNAKFDLDMLKKE--GFNSFFKLIDTF 114 Query: 121 RVWHHRLA-DLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 RV H + + + + + E + E+ + + N H A+GD F+ L Sbjct: 115 RVLKHLIPEGKFSLQYNRYALGLYKKEK--DICEKYNIQI-NAHDALGDVIVLGLLFEYL 171 Query: 180 R 180 Sbjct: 172 V 172 >UniRef50_C2PKV5 DNA polymerase III subunit epsilon n=1 Tax=Bacillus cereus MM3 RepID=C2PKV5_BACCE Length = 280 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 15/154 (9%) Query: 28 LNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLR 87 + V+ GE + + + D + I+G + ++ALT + A+ + Sbjct: 2 VFVENGEIID-TLYELINPEEDFDYYNIAIHGITPSDV-KDALTFPEFYEAYKK---RFE 56 Query: 88 GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEG 147 FD + Y +P V+++ L Y K I + Sbjct: 57 NKLLVAHYLPFDGYALRDSLRRYELP-------SVYNNLLCT---YQLSKKLITGEKSYT 106 Query: 148 LDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + + + N H+A+ DA A A L H Sbjct: 107 LKYLCKHFSIELNNHHNALEDARACAQLMLQLSH 140 >UniRef50_Q6VY79 Putative uncharacterized protein n=1 Tax=Streptomyces phage VWB RepID=Q6VY79_9CAUD Length = 263 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 10/180 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ DLETTG+D + V +D G + A ++G Sbjct: 6 RMVAFDLETTGVDVEQDRIVTAAA--IDLGAEKPLTLEWLADPGIEIPEGATAVHGITTE 63 Query: 64 GLYREA-LTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + +R G N +D T++ R+ Y +P + Sbjct: 64 HAREHGERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYELPLLQDRLDG 123 Query: 122 VWHHRLADLAA----YAAGKLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATAFC 175 H + K + L +A+ +P H DA A Sbjct: 124 TPLHVIDTRVLDQHCLPYRKRVSETQGARQLITLAQVYSLPWDAEAAHGCSYDALMAARI 183 >UniRef50_Q2W5M2 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease n=3 Tax=Magnetospirillum RepID=Q2W5M2_MAGSA Length = 216 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 29/198 (14%) Query: 4 QLIVVDLETTGLD-YDTALP-------------VEVGLLNV---DTGESLYFVPHITVEQ 46 +LI +D ETTG A +E+G + + + G H ++ Sbjct: 13 RLIAIDAETTGFRVPTAAEIKKMPKGLRLPGVMIEIGCVELLRGEDGWKTGESWHRRIQP 72 Query: 47 LAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ 106 ++ ++G L Q E + ++ + + + + + Sbjct: 73 GGPIAKASIAVHGITPAELKDA----PQFRDVLDEFETFIGQDMLLAHSAENEIEFLNFE 128 Query: 107 RVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR---H 163 + + P LD + +RL + +R H Sbjct: 129 YARVG--RCGFDDVIFSDNDFVCTQELSRQFFPGVPG---SLDVLCDRLWIDRSDRFEHH 183 Query: 164 SAIGDAAATAFCFDMLRH 181 A+ DA TA F + Sbjct: 184 GALLDAILTAEAFMKMAG 201 >UniRef50_A9VVI2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Bacillus weihenstephanensis KBAB4 RepID=A9VVI2_BACWK Length = 271 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 53/174 (30%), Gaps = 22/174 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 V DLETTGLDY VE+ + D + L + + + ++ + Sbjct: 14 FTVFDLETTGLDYKNEQVVEIAAIRTDLEQELGRMHILVKLNEGKKLPDFLVDNTDLRDY 73 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + ++ + FD + + + P L + Sbjct: 74 MLVNGMVEH----QALINLMAFMGNSIVVAHYAPFDFAYLFKALIA---PELFLCTRSIE 126 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 D + L AER GV + H A+ D AT Sbjct: 127 RLLTPD--------------KSASLAPTAERRGVKLEGAHRAMNDIEATIGVLK 166 >UniRef50_C6X498 DNA polymerase III subunit epsilon n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X498_FLAB3 Length = 185 Score = 109 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 24/183 (13%) Query: 4 QLIVVDLET-TGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 +D ET T ++ E+G+ V+ G+ + I P+ ++++G Sbjct: 3 DFCAIDFETAT---HERNSACEMGICVVEDGQIVKTQTWLIKPPNYPYFHPRNIDVHGIT 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + W E ++ + GN N FD+ ++ Y Sbjct: 60 PRDVQD----SPTFDEIWHEAENLMYGNLMVAHNAGFDAGVLRSCLDYYGF--------- 106 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC----FD 177 + +L L + + K + GL ++AE+ + H A DA A F+ Sbjct: 107 -YKPKLNYLCSISIAKKSWKNLPKYGLKSLAEQHQIS-FKHHRAGDDAEVCAKISLLAFE 164 Query: 178 MLR 180 L Sbjct: 165 KLM 167 >UniRef50_D1C750 Exonuclease RNase T and DNA polymerase III n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C750_SPHTD Length = 335 Score = 109 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 15/185 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ +D ETTGL D A V++ ++ D + + A +A ++G + Sbjct: 23 DVVYLDTETTGLGPD-AEIVDIAVV--DQAGRVLLNSLVQPRNPIPA--EATRVHGITNK 77 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + E+ ++ N A+D ++++ Y + Sbjct: 78 MVMNA----PEWPEVYQELARIIQDYPTLIIYNAAYDRRLISQTCRRYGISVPRAD---- 129 Query: 123 WHHRLADLAAYAAGKLNIDPTEL-EGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 W + + AAY L+ A G P+ H A+ DA A + Sbjct: 130 WQCAMLNYAAYRGEWNARYGNHRWHTLEKAAIETGAPMPPTHRALDDAQACRHVVLSMAG 189 Query: 182 TAAAH 186 A A Sbjct: 190 VATAR 194 >UniRef50_Q4UJH2 DNA polymerase III, epsilon subunit-like protein n=5 Tax=spotted fever group RepID=Q4UJH2_RICFE Length = 377 Score = 109 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 26/171 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV---DTGES--LYFVPHITVEQLAAADPKAMEINGY 60 I +D ETTGL ++ +E+G++ + G + + + + E+ G Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQQPIPLRITELTGI 185 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + +A+ + A + + + N +FD + + Sbjct: 186 TDEMVQGKAIDQ----EAVTQFLENVD--IIIAHNASFDRPFFDKMFLHLP--------P 231 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 + W AD+ A + E L+ +A + H A+ D A Sbjct: 232 KAWGCSRADIDWKA------EKIESHKLEYLAYKYNF-FYEGHRAVTDCLA 275 >UniRef50_C0W0V1 DNA polymerase III subunit epsilon n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0V1_9ACTO Length = 232 Score = 109 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 7/178 (3%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYR 67 DLETTG+D V V G + + A++++G Sbjct: 11 FDLETTGVDTARDRIVT-ASYEVRCGSEVLEQVTLLFNPGVEIPQSAIDVHGITNERAQA 69 Query: 68 EALTEQQ-TAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 E L + ++ +L G G N FD T++ + Y +P +G + Sbjct: 70 EGLDPRVGLEQLAAKLVSYLSEGAPLVGFNVQFDVTLLENELRRYGLPTVAERLGGRFAP 129 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDMLRH 181 + L L+ L + E G+ H + D + T + Sbjct: 130 IVDPLVLDRE--LDRWRKGKRKLVDLLEVYGIAVDPDELHQSDVDVSMTLSLLQAMVR 185 >UniRef50_C5V7N5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7N5_9PROT Length = 234 Score = 109 bits (274), Expect = 5e-23, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 13/177 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGY 60 A + +VVD+ET+GL+ + +G + V G+ L +I ++Q ++ + + ++G Sbjct: 39 ATRCVVVDVETSGLNLWEDRLISIGAVAVVNGKIELGDSFYIVLQQEIVSEKENILLHGI 98 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 G +A + + + FD T++ R Y + FS Sbjct: 99 ---GGAAQAEGVPAADALLAFLAFLQKD-PLIAFHVTFDQTMIVRAISKY-LGFSFKQPW 153 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L A + LD + RH+A+ DA TA F Sbjct: 154 SDMAYVMPALNPELAARF-------RSLDDWIAHFDIRNDARHNALADALVTAQLFQ 203 >UniRef50_B5GC70 DNA polymerase III n=1 Tax=Streptomyces sp. SPB74 RepID=B5GC70_9ACTO Length = 243 Score = 109 bits (273), Expect = 5e-23, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 5/161 (3%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ D+E+TG+D +TA V + G +L + +A ++G Sbjct: 6 QRYCAFDIESTGVDVETARIVT-ACVAQVRGGALPETRSWLADPSIEIPDEATAVHGITT 64 Query: 63 RGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + + L G N +D T++ R+ + P +G Sbjct: 65 DRARAEGRPAGEVVEEITTLLHSCLLAGAPVVAMNARYDLTLLDRECRRHERPTLADRLG 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 L L +++ L A+AE VP+ Sbjct: 125 GDVRPVLDPLVLDR--QVDRYRRGKRTLTALAEHYRVPLDG 163 >UniRef50_Q8KQK8 DNA polymerase III epsilon subunit (Fragment) n=3 Tax=Candidatus Tremblaya princeps RepID=Q8KQK8_TREPR Length = 212 Score = 109 bits (273), Expect = 6e-23, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 55/171 (32%), Gaps = 14/171 (8%) Query: 15 LDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQ 74 L EVG + + G H + A ++G + L T+ Sbjct: 1 LSPRYHRLAEVGCVEIACGRITGNYFHAYINPRQRMTRGAQAVHGLRDEFLA----TQPA 56 Query: 75 TAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYA 134 + + +L +T G N +FD + T + R H + + A Sbjct: 57 FSAIAQRLLFFLCQSTLVGHNLSFDLNFLDAGLATAGFMPA----ARYCHGVIDTMCHLA 112 Query: 135 AGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRHTA 183 LDA + LGV + RH A+ DA A F + + T Sbjct: 113 Q----RGSRRRFSLDACCDMLGVRRGDRARHGALVDAVLLAEAFVVAKRTR 159 >UniRef50_Q4D4F6 Exonuclease, putative n=1 Tax=Trypanosoma cruzi RepID=Q4D4F6_TRYCR Length = 316 Score = 109 bits (273), Expect = 6e-23, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 54/226 (23%), Gaps = 62/226 (27%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD-TGESLY------FVPHITVEQLAAADPKAMEIN 58 I VDLETTG V +G + + G +L TV + +A ++ Sbjct: 97 ICVDLETTGFSAQRDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAEAVH 156 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWL-------------------------------- 86 G L + +L Sbjct: 157 GLSFEMLRDA----PLLEDVISDFAAFLIQLDGNLPQSGQTEENHRAKPGDLSAKKRCTA 212 Query: 87 ---RGNTF-----AGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKL 138 G N FD++ + R VW + + Sbjct: 213 ATTAGCVLTLPPVIAHNANFDASFLQRAVSGAGWR-------VVWDEYAPLTCTQSMFR- 264 Query: 139 NIDPTELEGLDAVAERLGVPVVN---RHSAIGDAAATAFCFDMLRH 181 + + L + GV RH A+ DA F L Sbjct: 265 ALYSHQAADLSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRLAE 310 >UniRef50_D1BL33 Exonuclease RNase T and DNA polymerase III n=3 Tax=Veillonella RepID=D1BL33_VEIPT Length = 209 Score = 109 bits (273), Expect = 6e-23, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 18/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ET + + ++ V G+ + + D + +EI+G Sbjct: 3 DFVALDFET--ANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQP- 59 Query: 64 GLYREALTEQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 ++ L E+ W + + L+GN N FD ++ Y +P+ L Sbjct: 60 ---KDVLHEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYA-- 114 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L+ +A +GV H A+ DA A Sbjct: 115 --------CTVKLSRAVWPDLVNHKLNTMAAYIGVE-FKHHYALDDAETCAKVVLEAAKL 165 Query: 183 AAAH 186 + Sbjct: 166 KGVN 169 >UniRef50_Q1QRC1 Exonuclease n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QRC1_NITHX Length = 334 Score = 108 bits (272), Expect = 8e-23, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 17/177 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 IV+D+ET + D A ++GL+ V GE + I V D I+G Sbjct: 3 NSDFIVLDVET--ANADYASICQIGLVEVVAGEVVSQEA-ILVNPDDYFDGFNTSIHGIT 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L G+ + FD ++R + V Sbjct: 60 ----ADHVCGAPLFHEVHAALSQRLSGSIIV-HHGPFDRVSISRACERCGIE--SFDVQW 112 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + R+ K L ++A G+ H A+ DA AT F Sbjct: 113 LDNQRVVRRVWEQFSK------SGYALKSLAAFFGIE-FQHHDALQDAIATNEIFRR 162 >UniRef50_C9LN05 DNA polymerase III PolC-type n=1 Tax=Dialister invisus DSM 15470 RepID=C9LN05_9FIRM Length = 196 Score = 108 bits (271), Expect = 9e-23, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 57/181 (31%), Gaps = 22/181 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+D+ETTG+ D E+ L V +GE H V+ + + + G Sbjct: 30 TYTVMDIETTGMYSD---ITEIAALCVVSGEIRD-TFHTLVKAKGPIEKRVERLTGITSD 85 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ G G D ++ R P Sbjct: 86 MLEE----QPPIDDVLPIFMTFIEGFPLVGHGLDSDLIVIDRNLKAVGKPLVTNDY---- 137 Query: 124 HHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + ++ KL + E + A+AE +P H A+ D A F+ L Sbjct: 138 ------IDTHSLAKLLLPEREGEHRKYSVKALAEYYELPCSTFHRAMDDCMAEKMLFERL 191 Query: 180 R 180 Sbjct: 192 L 192 >UniRef50_A6CY65 DNA polymerase III, epsilon subunit n=1 Tax=Vibrio shilonii AK1 RepID=A6CY65_9VIBR Length = 197 Score = 108 bits (271), Expect = 1e-22, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 60/176 (34%), Gaps = 9/176 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+D ETTGLD +T + +G + + + + +E + IN Sbjct: 9 EYLVLDFETTGLDANTNTILSLGWVEIANFTVNVASAKQLFIESPNEVKAETAVINHIMP 68 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L A ++ + ++ V + + + Sbjct: 69 EMLQDGI----SLDSAMTQLFQAAKNKILIAHGSMIEAAFVDEYLTQ---KYGVSDLPVM 121 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 W LA + A +N D L +R G+P N H A+ DA ATA F Sbjct: 122 WLDTLAIEKSMALA-VNKDAEIDVRLSETRKRYGLPEYNGHEALIDAIATAELFLA 176 >UniRef50_UPI000038277F COG0847: DNA polymerase III, epsilon subunit and related 3''''-5'''' exonucleases n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038277F Length = 187 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 55/169 (32%), Gaps = 7/169 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ +D ETTGLD D V L+ + G V ++ +A I+G Sbjct: 10 PLLGLDTETTGLDVDVDRVVTAALVLREPGA--THVRTWLLDPGVEIPAEATGIHGITNA 67 Query: 64 GLYREALTEQQTAVAWGEVQ--DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + G N AFD I+ + V + +P +GR Sbjct: 68 HATAHGSAPAVALDEIATLVVDAQRDGVPLVAYNAAFDLAILDTELVRHGLPTLAARLGR 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDA 169 L L A D L + R V V R H+A GD Sbjct: 128 PVRPVLDPLVLDRAWDPARD--GKRRLVDLCARYEVLDVGRLHTADGDV 174 >UniRef50_D0U233 Putative exonuclease n=1 Tax=Clavibacter phage CMP1 RepID=D0U233_9CAUD Length = 236 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 60/191 (31%), Gaps = 21/191 (10%) Query: 7 VVDLETTGLDYDTALPVE--VGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V D ET+G+D + V +GL +D ++ ++ A +I+G Sbjct: 9 VFDTETSGVDVENDRIVTAFIGL--MDPDGTMTEFHEWLIDPGIPIPEGASDIHGITTEK 66 Query: 65 LYREALTEQQTAVAWGEVQDWLR-----GNTFAGSNPAFDSTIVARQRVTY-SMPFSPLT 118 + E A E+ L N +D TI+ R+ + + Sbjct: 67 AHAEGRK--DIDKALMEIATKLDYASRWNYPVVIMNAPYDLTILDRELRRHVGIKNFRAP 124 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGDAAATAFC-F 176 + + KL L +A GVPV N H A D Sbjct: 125 NVVLDTFVID-------KKLYTFRKGSRKLVDLARIYGVPVEENAHDAQADCRMAGRVTL 177 Query: 177 DMLRHTAAAHL 187 L+H A L Sbjct: 178 KQLQHEWLAPL 188 >UniRef50_Q1WDI5 DNA polymerase III n=5 Tax=root RepID=Q1WDI5_9CAUD Length = 238 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 6/156 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L D ETTG+D ++ V + + G + A ++G Sbjct: 7 RLCAFDTETTGVDVESDRIVT-AAVLLVGGGQPTETHTWLADPGIDIPEAASAVHGVTSE 65 Query: 64 GLYREALTEQ-QTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E + + D + G N FD TI+ R+ + +P G Sbjct: 66 RARAEGRPAPMVVSEVAALLADQIVTGVPVVAMNARFDVTILDRELARHGLPSLAEQAG- 124 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV 157 + D + L +A GV Sbjct: 125 -AEPLVLDPLVMDK-RAEKYRRGGRKLVDLARHYGV 158 >UniRef50_B5ETC4 DNA polymerase III, epsilon chain n=2 Tax=Vibrio fischeri RepID=B5ETC4_VIBFM Length = 259 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 21/184 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPK---------A 54 VVD ET+GL+ T V +G +++ G L H + + + + + A Sbjct: 66 FTVVDFETSGLNPKTDHIVSIGWVHIINGVIKLNSAQHHIINEPISINAEDEGEERDHTA 125 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 ++ + ++ ++ A L N + + + ++ +P Sbjct: 126 RSLHHILPEQ-QKMGISLEK---AMECFFSNLPSNILVVHGATIEQRFLEQFFLSLQLPN 181 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 P+ + + L ++ + +P H A+ DA +TA Sbjct: 182 LPMIWLDTLRIEQNTIQQNRYQR-------DFRLFSLRRQYKLPDYPAHHALVDAISTAE 234 Query: 175 CFDM 178 F Sbjct: 235 LFLA 238 >UniRef50_Q9HIG3 Putative uncharacterized protein Ta1376 n=1 Tax=Thermoplasma acidophilum RepID=Q9HIG3_THEAC Length = 188 Score = 107 bits (269), Expect = 2e-22, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 64/183 (34%), Gaps = 17/183 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I +D ETTGLD + VG + + S F + A D A+ +NG+ + L Sbjct: 2 IFIDTETTGLDPTKCSVISVGAVVYEDP-SSRFYMEARPDPDAMIDDGALAVNGFTKEYL 60 Query: 66 YREALTEQQTAVAWGEVQDWLR----GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 +W T AG N FD + ++++ + S+ + Sbjct: 61 SS---IANAMYDMLTTFTEWYASNSSDYTVAGYNIDFDISFLSQECLMNSVRMIRIDRRI 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLR 180 + Y G+ LD + LG+ H+A+ A A A + ML Sbjct: 118 DLKNLFETSDLYKGGRK--------RLDDLLMALGLGTERKPHNALYGALAEAEAYAMLV 169 Query: 181 HTA 183 Sbjct: 170 EKR 172 >UniRef50_D0JBJ5 DNA polymerase III subunit epsilon n=1 Tax=Blattabacterium sp. (Blattella germanica) str. Bge RepID=D0JBJ5_BLASB Length = 256 Score = 107 bits (269), Expect = 2e-22, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 61/179 (34%), Gaps = 19/179 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + + D+E TG++ +E+ +L + + + P++ I+G Sbjct: 5 LHRPICFFDIEATGINIGKDRIIEISILKIFPNGNQEDKTWLVC-PGIPIPPQSTAIHGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + + + + AG N FD I+A + + + F Sbjct: 64 KNEDVEGKL----KFKDVAFSIFKMIENTDLAGYNSNRFDIPILAEEMLRAGISF----- 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFD 177 + H+ D+ ++ E L A + ++ HS+ DA AT Sbjct: 115 -DIKKHKTIDV------QVIFHKMEPRTLSAAYKYYCSKELIKAHSSKEDAFATYEILL 166 >UniRef50_B8DPI8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DPI8_DESVM Length = 267 Score = 107 bits (269), Expect = 2e-22, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 67/218 (30%), Gaps = 39/218 (17%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYER 63 + +D E TGL+ + VG + + + + A P+ + ++G Sbjct: 25 FVSLDCEMTGLNPARDDLLAVGAVVLRGMRLDLSATFRGLLRPACPVRPEGVPVHGILP- 83 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN--------------TFAGSNPAFDSTIVARQRVT 109 EA + A + WL G G D +A R Sbjct: 84 ---GEAAHGDEAAAQLARLDAWLAGCAAVPGAGNGAEAPVVLLGWCLGLDEAFLAAGRKR 140 Query: 110 YSMPF---SPLTVGRVWHHRLADLAAYAAGKLNIDP-----------------TELEGLD 149 +P V ++ H A A +G+ + P + L Sbjct: 141 AGLPARTHPRCDVLDLFRHVRARGVAAPSGQGAMPPSGASPLPSTHAALADIPLKDADLY 200 Query: 150 AVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAAAHL 187 AVA LGV V H A+GDA A F L L Sbjct: 201 AVARALGVDVHGAHDALGDACMCAQVFQRLVPLLERGL 238 >UniRef50_B9Z8P9 Exonuclease RNase T and DNA polymerase III n=3 Tax=Neisseriaceae RepID=B9Z8P9_9NEIS Length = 202 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGY 60 + +I + TT LD A + +G + + + + V+ + + ++G Sbjct: 27 SDDVISLACNTTSLDVAEAELLTIGAVRLSGNRIVTSEALDLLVKPGRPLTREGVGLHGL 86 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPL 117 R L A + D++ G G FD ++ + +P + Sbjct: 87 RPRDLSGGL----DAEAAVRCLLDFIGGRPVLGYYLEFDIAVLDKYLRPLLGIGLPNRQV 142 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + ++ L + A+ + LGVPV+ RH A+ A A + Sbjct: 143 EISGRYYDYKLRQQPNGRVDL--------RMAALIDDLGVPVLPRHDALNKAITAAMLYL 194 Query: 178 MLRHT 182 L+ Sbjct: 195 ALKRR 199 >UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=cellular organisms RepID=B7AB83_THEAQ Length = 1684 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 18/185 (9%) Query: 1 MAKQ--LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M + +DLE T D + A +E+ + F ++ + + D +A I Sbjct: 1 MNAPSFFVALDLEATSPDPEEAEILELAA---QDSQGRTFHRYLATNKPLSKDHEAFRIT 57 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPL 117 RE + ++ A E D+L G + G N +D ++ R + P Sbjct: 58 QIPFEEYEREKVPPER---ALREFLDFLGGRSLLGHNLLRYDLPLLERALGEVGLNLPPE 114 Query: 118 TVGRVWHHRLADLAAYAAGKLNID--PTELEGLDAVAERL-GVPVVNRHSAIGDAAATAF 174 +R D A I L + L + H A D AT Sbjct: 115 A------YRALDTLRLAHLVFPIPKDGLAGYRLGDLYHYLTQEELEGAHRAATDVGATWR 168 Query: 175 CFDML 179 + L Sbjct: 169 ILEAL 173 >UniRef50_Q12PE3 Ribonuclease T n=157 Tax=Gammaproteobacteria RepID=RNT_SHEDO Length = 226 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 24/194 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGL--LNVDTGESL----YFVPHITVEQLAAADPKAMEING 59 +V+D+ET G + +T +E+ + L ++ L HI + A +P+A+ NG Sbjct: 20 VVIDVETAGFNANTDALLEIAVTLLKMNDDGILVLDKTVHFHIEPFEGANLEPEALAFNG 79 Query: 60 YYERG-LYREALTEQQTAVAWGEV-----QDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 L ++ + V + N AFD + V + + Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKTVKKGQKASDCHRSIIVAHNAAFDLSFVNKAIERNDLK 139 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAA 171 SP + D A A + L + G+ N HSA+ D Sbjct: 140 RSPFHPFASF-----DTATLAGLSIGHTV-----LAKACKMAGIDFDNKEAHSALYDTER 189 Query: 172 TAFCFDMLRHTAAA 185 TA F + + A Sbjct: 190 TAELFCHIVNRWKA 203 >UniRef50_A7SLH3 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SLH3_NEMVE Length = 275 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 60/207 (28%), Gaps = 41/207 (19%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITV--EQLAAADPKAMEIN 58 V+D+ETTGL V++ + V G+ ++ +I ++ +++ Sbjct: 24 NATYCVLDVETTGLSKLNDRIVQIACVKVKPTGDKESWMSYINPCMDREKQL-AGGYKVH 82 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPL 117 L L + + + + +L G N +D ++ ++ S Sbjct: 83 HLSPDML----LKKPKFSEIVESLWRFLCGAEYLVAYNCLYDWDMLCQEFRRIDRTESGY 138 Query: 118 T-VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP------------------ 158 T + + + + + L+ VA+ L + Sbjct: 139 TKLEEEFVKKFTWIDVLRLSISSFPSLSNHKLETVAKHLKIEYMSRTTYTYKSSFNSGEV 198 Query: 159 -------------VVNRHSAIGDAAAT 172 H A+ D T Sbjct: 199 EAVSVTEQSCDPWQGGAHDAMCDVLTT 225 >UniRef50_UPI0001B52926 exonuclease, RNase T and DNA polymerase III n=3 Tax=Fusobacterium RepID=UPI0001B52926 Length = 191 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 16/193 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEV-GLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M K +I +D ET G++ + + +++ G++ +D + F +I + + + KA+E+ G Sbjct: 1 MNK-IIFIDTETGGVNPEKSALIQLSGIIRIDKKDVEKFNFYIKPFENSEVNEKALEVQG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLR---------GNTFAG-SNPAFDSTIVARQRVT 109 L E E++ + + + L N FD I+ Sbjct: 60 RTLDELKAEKYIEEK--EVYKQFINLLDKYIDKYDKTDKFIVAGYNVRFDVDILKALFQR 117 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 + F + L + + + E L+ + G+ + H ++ D Sbjct: 118 HGNNFLFSYLDSSMLDPLYSIRLLQIAGI-LPVLENNKLETWCKHFGIEL-KAHDSLEDI 175 Query: 170 AATAFCFDMLRHT 182 AT L Sbjct: 176 VATKKLIGKLISL 188 >UniRef50_A7GA16 Exonuclease, DNA polymerase III, epsilon subunit family n=28 Tax=Clostridium RepID=A7GA16_CLOBL Length = 309 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 17/177 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D ET + P +G++ V GE + V ++ + P + I+G Sbjct: 3 FVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + E + WG+++ + N N +FD +++ Y++ Sbjct: 61 VQDEL----EFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEY----- 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + K + L+ V LG H A+ DA A + + Sbjct: 112 -----ICTMKLSKNFYSNIDNARLNTVNNFLG-YKFKHHDALADAMACSNILINISK 162 >UniRef50_A7HLA2 DNA polymerase III, epsilon subunit n=3 Tax=Thermotogaceae RepID=A7HLA2_FERNB Length = 188 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 55/182 (30%), Gaps = 18/182 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYE 62 VD+ETTG+D +E+ ++ + G+ + + ++ A ++ Sbjct: 7 YCCVDIETTGIDPSMGDRIIEIAIIPIYKGKIVKEWIYTSLVNPKVNIQAYAQSVHKISN 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + V+ + + N FD T + + Sbjct: 67 SDIENA----PELDEIISVVRKYSKDTIMVFHNAKFDLTFLDYAAKEVGQ-------LPL 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + L A L+++A+ + + H A DA TA F Sbjct: 116 DVYYIDTLDISKAVY-----GRRRKLESLAQEMKISHKVTHRAYDDAFVTANVFIRFFDM 170 Query: 183 AA 184 Sbjct: 171 LG 172 >UniRef50_C0WKD3 DNA polymerase III epsilon subunit n=5 Tax=Corynebacterium RepID=C0WKD3_9CORY Length = 470 Score = 106 bits (265), Expect = 4e-22, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 52/174 (29%), Gaps = 14/174 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKA-MEINGYY 61 + VD+ET + + ++G + G + T + + I+G Sbjct: 125 DFVAVDVET--ANDNWGSICQIGAVRYRDGGETASQSWLCTPPPGLEHFAEINISIHGIT 182 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A A E+ D++ + N FDS+ + + + + Sbjct: 183 AADVEGAM----PFATAAAELFDFIGSDVIVAHNVQFDSSALRSGLLAAGADVPTVPLAC 238 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + A + + L V + LG H A DA A Sbjct: 239 SL------ALSRDASRQGVISVANHKLPTVVKHLGGASFTHHDATEDARAAGTI 286 >UniRef50_C0WBN5 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WBN5_9FIRM Length = 228 Score = 106 bits (265), Expect = 5e-22, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 16/175 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +V DLE G Y +E+ + VD V + + E+ G + Sbjct: 56 VVFDLELAG--YAEDDIIEIAAIKVDFLGRQTAVFRELIRPRTKISKRVTEMTGITRDMV 113 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAF-DSTIVARQRVTYSMPFSPLTVGRVWH 124 + Q ++ G+ G + + D + Y M + Sbjct: 114 KDK----PQLPEVLKRFFAFVEGSAVMGHDIGYNDIMAINLACRRYGMKA--------FR 161 Query: 125 HRLADLAAYAAGKLNIDPTELEG-LDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 D + L+ + + L A+ +P+ H A+ D AT ++ Sbjct: 162 PPFLDTSRLILRHLSREAVGGKTGLAALLAHFNIPIHRHHEALADCEATLLLYEA 216 >UniRef50_Q11Z63 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11Z63_CYTH3 Length = 183 Score = 105 bits (264), Expect = 5e-22, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 21/184 (11%) Query: 5 LIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +D ET +T VG+ V+ G+ + + + ++I+G Sbjct: 3 FTALDFET----ANTHKTSICAVGMAIVEDGKVVKTISKLIKPVPDFYSYWNVQIHGITP 58 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 W E++ ++ +T N AFD + T+ + F Sbjct: 59 DMTADA----PYFIDVWQELKQYIDYSTLVAHNAAFDVGALRSILTTHEVSFPKTDYF-- 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + E L V + VP+ N H A DA A Sbjct: 113 --------CSCSVSRKVFKEIENHKLSTVCRHIDVPL-NHHEAESDAIGAAQIIIKAGER 163 Query: 183 AAAH 186 A+ Sbjct: 164 LGAN 167 >UniRef50_C8PWE0 Exonuclease, Ycg4D n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWE0_9GAMM Length = 217 Score = 105 bits (264), Expect = 6e-22, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 14/176 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + D ET G +E+ D+ + I ++ + P A +++G Y L Sbjct: 50 LFFDTETIGGG-REDQIIEIAFC--DSDRHVIIDTLIYTDR--TSSPGAFKVHGIYPHEL 104 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + L+G T N FD ++ + + + + + + Sbjct: 105 ----IGKPTFIDIQPAIVQLLKGRTLYAYNANFDIRMMRQ--SGHKLRLQQVGIKCLCKQ 158 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + Y+ L G+ N H A DA A + + Sbjct: 159 FADFIGQYSPY---FKANRYFSLSKACLHFGIEHSNAHRARPDALACVTVWQGMVK 211 >UniRef50_D1U8F3 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8F3_9DELT Length = 179 Score = 105 bits (264), Expect = 6e-22, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 19/175 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D ET D VGL+ VD GE + + +P ++++G + Sbjct: 7 TTRFVAIDFET--ADAKRDSACAVGLVVVDRGEIVARDYRLIRPPRRRFNPFCVQVHGIH 64 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W ++ G N +FD +++A Sbjct: 65 WEDVAD----QPAFGELWPDLSPLFEGADFLVAHNASFDKSVLAACCRE----------S 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 R L + L V LG+ + + H A DA A A Sbjct: 111 RCLPPVQPFLCTVQLARTTW-QLPSNKLPNVCCHLGITLTHHH-AASDAEACARI 163 >UniRef50_P41060 Uncharacterized exonuclease CP81 n=12 Tax=root RepID=CP81_BP186 Length = 194 Score = 105 bits (264), Expect = 6e-22, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 14/184 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I +D ETTGL D A VE+ L +D+ + + + A +A I+G + + Sbjct: 21 IFIDTETTGLG-DDAEIVEICL--IDSAGFIMLNTLVKPTKPIPA--EATAIHGITDEMV 75 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + ++ F N +D+ ++ + Y + + Sbjct: 76 MYAPTWKDIHGAVASLFFEYG----FVIYNADYDTRLIYQTAKLYGLENDGFCYF-LNER 130 Query: 126 RLADLAAYAAGKLNIDPTEL---EGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLRH 181 + YA + + L A GV V H A+ D T D L Sbjct: 131 SACAMMLYAEYRGEPGRFKGYKWHKLVDAAAHEGVSVEGKAHRALADCRMTLGIIDALAK 190 Query: 182 TAAA 185 AA Sbjct: 191 GGAA 194 >UniRef50_A4WYE4 Transposase and inactivated derivatives-like protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WYE4_RHOS5 Length = 282 Score = 105 bits (264), Expect = 7e-22, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 17/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+D+ET + + ++GL+ + G + H+ ++ DP + I+G Sbjct: 2 KFVVLDVET--ANPRMSSICQIGLVTFEGGVEVAAESHL-IDPEDHFDPVNVAIHGIT-- 56 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E +G V D G A FD ++R +++P Sbjct: 57 --AAAVVGEPTFREVYGRVCDLTAGTVVACH-THFDRVALSRVCELHALPTLS------- 106 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D A A GL +A G+ H A+ DA A Sbjct: 107 -CSWLDTARVARRAWVEFSKSGYGLSNLARHFGI-TFQHHDALHDARAAGLILARAIEET 164 Query: 184 A 184 Sbjct: 165 G 165 >UniRef50_C1YH96 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=2 Tax=Actinomycetales RepID=C1YH96_NOCDA Length = 233 Score = 105 bits (263), Expect = 8e-22, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 44/161 (27%), Gaps = 8/161 (4%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + D E+TGLD V L +D V ++ +A +I+ Sbjct: 5 TRPMAAFDTESTGLDLANDRIVTAALWRIDPAARTKEVTTWLIDPGIDIPQEATDIHHIT 64 Query: 62 ERGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + G + G N +D +++ + + Sbjct: 65 TEHAREHGRPAAEAVPEIGAALEKAAADGVPVVVYNAPYDLGLLSAELRRHDAGARFDGT 124 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV 160 RV + D + + L V GV + Sbjct: 125 LRVLDPLVID------KRFDTFRRGSRKLVDVCAHHGVRLD 159 >UniRef50_D0B846 Exonuclease n=51 Tax=Alphaproteobacteria RepID=D0B846_BRUME Length = 332 Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 50/177 (28%), Gaps = 26/177 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFV-PHITVEQLAAADP-KAMEINGY 60 +VVD ETTGL+ +E+G + G ++Q + P + I G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + E + N FD + R L++ Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPFLER-----------LSIA 176 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + T+L L + N H A D A Sbjct: 177 FANKPWACSVKEIDWTARGFEGTKLGYLIGQSGYFH----NGHRAEDDCQALLAVLK 229 >UniRef50_C1YMP7 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YMP7_NOCDA Length = 335 Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 47/171 (27%), Gaps = 24/171 (14%) Query: 1 MAKQLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKA---M 55 M++ +D ET + VGL+ V G + + D + + Sbjct: 1 MSRTWTAIDFET----ANHDRGSACAVGLVRVRDGAVVDRYT-TLIRPPRQVDFFSRHNI 55 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 ++G + A + ++ G N AFD ++ + Sbjct: 56 AVHGIT----AADVADAPSWEQAHARIVEFADGGPLVAHNAAFDMGVLRQACGHTG---- 107 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAI 166 + H A + L V +G V + H A Sbjct: 108 ------LSHPAWEYACTLALSRRTWSGLPDHKLPTVCAHIGHRVTHHHRAD 152 >UniRef50_A9M0U8 DNA polymerase III, epsilon subunit n=9 Tax=Neisseria RepID=A9M0U8_NEIM0 Length = 187 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 38/127 (29%), Gaps = 12/127 (9%) Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G L E A ++ D+LRG N FD + + +P Sbjct: 2 HGLTIEVL--EGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLP---- 55 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFC 175 + D A A P + LDA+ R V R H A+ D Sbjct: 56 -TVEELGCTVTDTLAMAREMF---PGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEV 111 Query: 176 FDMLRHT 182 + + Sbjct: 112 YLAMTRR 118 >UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YII7_9FLAO Length = 1555 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 17/191 (8%) Query: 5 LIVVDLETTGL-----DYDTA-----LPVEVGL-LNVDTGESLYFVPHITVEQLAAADPK 53 ++ D ETTGL + V++ L+ D G + +I + Sbjct: 2 YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGNLIENQDYIIKPEGYDIPFN 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 A I+G + E Q+ + +V + + +G N FD IV + ++ Sbjct: 62 AARIHGITTKIANEEGRDLQEILEEFSKVLEKV--RVVSGHNVEFDYNIVGAEFYRKNLK 119 Query: 114 FSPLTVGRVWHHRL-ADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGDAAA 171 + + L AD G+ + L+ + E+ G H+A D A Sbjct: 120 DNLQEKPKADTMILGADFCQLGGGR--GGRFKPPKLEELYEKLYGSKFDEAHNAAADVNA 177 Query: 172 TAFCFDMLRHT 182 TA F + Sbjct: 178 TARAFFEMVRI 188 >UniRef50_B2GAN1 DNA-directed DNA polymerase III epsilon subunit n=49 Tax=Lactobacillales RepID=B2GAN1_LACF3 Length = 179 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 56/174 (32%), Gaps = 16/174 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I +D ET + + V + + + + +++G +ER Sbjct: 3 FIAMDFET--ASAKRFSACSLAITIVRNSQIQD-EFYTLINPQTPFFWRNTQVHGIHERD 59 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + ++A T + E + N FD++++ + + + Sbjct: 60 V-KDAPTFPEVWEHIQEF--FTPDKLVIAHNATFDNSVLKNTLLHFEIEP---------- 106 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + L+ + ++L + + + H+A+ DA A A Sbjct: 107 PVYQTLDTLKTSRQLFPAFPNHKLNTICDQLNIDLHHHHNALDDAHACANILLY 160 >UniRef50_Q47RH7 DNA polymerase III, epsilon subunit n=1 Tax=Thermobifida fusca YX RepID=Q47RH7_THEFY Length = 210 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 20/167 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP---KAMEI 57 M +D ET + + VGL+ V G + V A D + + Sbjct: 1 MHDTWTAIDFET--ANRNQGSVCAVGLVRVTDGRIVDRYT-TLVRPPAPVDHFEQDNIAV 57 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + ++ G+ F N FD ++ +P L Sbjct: 58 HGITPEHVADA----PAWPQVHTTILEFAAGSPFVAHNAVFDMGVIRAACAHAGLPEPSL 113 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + + L V +G + H+ Sbjct: 114 HYA----------CSLDIARRTWPALRNHRLPTVCRTIGYDLRRHHT 150 >UniRef50_B4SAW0 Exonuclease RNase T and DNA polymerase III n=2 Tax=Chlorobium/Pelodictyon group RepID=B4SAW0_PELPB Length = 190 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 23/193 (11%) Query: 5 LIVVDLETTGL-----DYDTA-----LPVEVGLLNVDTGESLYFVPHITVEQLAAADPK- 53 + D ETTGL T V++ L+ D + F ++ P Sbjct: 2 YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAIIKPEGFVIPSS 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSM 112 A++I+G + R L + + + N +FD IV + + M Sbjct: 62 AVQIHGISTQ---RALLEGKPLGQVLQSFYELVADAEVLVAHNISFDEKIVGSELIRAGM 118 Query: 113 PFSPLTVGRVWHHRLADLAAYA--AGKLNIDPTELEGLDAVA-ERLGVPVVNRHSAIGDA 169 P S ++ + + + L + + G H+A D Sbjct: 119 PNSL-----PSKRKICTMESTTDFCAIKGPYGNKWPKLSELYFQLFGTVFNEAHNAASDI 173 Query: 170 AATAFCFDMLRHT 182 ATA CF L+ Sbjct: 174 QATAKCFWELKRR 186 >UniRef50_A6DRG8 Putative exonuclease n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRG8_9BACT Length = 165 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ET V ++ V+ G + + + ++++G R Sbjct: 2 DFVAIDFET--ATAKRNSACAVAIITVEKGVIVDEYSELIQPPNNEYSWRNIDVHGIEPR 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ + E++ L G N +FD +++ R Y + ++ L V W Sbjct: 60 HT----MYKEDFEDLYPEIRKRLTGKLVVAHNESFDRSVMTRSMEYYDLDYADLGVADRW 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + Y A + L+ + + G+P+ H A+ DA A A + ++ Sbjct: 116 ---VCTVKLYKAQ-----GFKPAKLNILCDHFGIPL-KHHDALSDARACAELYKRVQEI 165 >UniRef50_UPI000169A625 DNA polymerase III, epsilon subunit n=1 Tax=Yersinia pestis FV-1 RepID=UPI000169A625 Length = 143 Score = 103 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 9/120 (7%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 I++D ETTG++ Y+ +E+G + V H+ V+ DP+A ++G Sbjct: 9 ILLDTETTGMNKLGVHYEGHRIIEIGTVAVINLPLTGRNFHVYVKPARLVDPEAYGVHGI 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + A E D++RG N AFD + Sbjct: 69 SDEFLADK----PTFADITPEFLDFIRGGELVIHNAAFDIGFKDYEFRMLQQDIPKTETL 124 >UniRef50_Q4V274 Possible exonuclease n=3 Tax=Bacillus cereus RepID=Q4V274_BACCZ Length = 287 Score = 103 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 24/176 (13%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGL +E+ ++++ TG+ L V+ +A I+G + Sbjct: 131 FVILDTETTGLTL-RDQIIEICVIDL-TGKILLNS---LVKPTINIPAEAASIHGITNKM 185 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 ++ + E+ + G T N FD ++ + ++ F + Sbjct: 186 VHDA----PSWIEIYKELCEVTAGKTLLIYNAEFDLGMIESTCIANNVEFKNFKSTCIMK 241 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L E + +H A+ D A L+ Sbjct: 242 MYADYVDSKRWI----------SLGDATE-----LTIKHRAVADCFAVLELLQQLK 282 >UniRef50_Q2FLJ5 Exonuclease n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FLJ5_METHJ Length = 215 Score = 103 bits (258), Expect = 3e-21, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 17/190 (8%) Query: 4 QLIVVDLETTGLDYDTA-----------LPVEVGLLNVDTGESLYFVPHITVEQLAAADP 52 + ++ D E+TGL V++ + D + ++ Sbjct: 2 KYLIFDTESTGL-PREEKDPFHYPEYWPRMVQLAWILTDGETIITEENYLIYPDGFVIPS 60 Query: 53 KAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYS 111 +MEI+G E + ++ G N +FD +IV + Sbjct: 61 SSMEIHGITNERAREEGKP---VLEVLSVFSESIKQADVLVGHNVSFDRSIVTSEYSRAK 117 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGDAA 170 + L + + + K + L + + P + H A D Sbjct: 118 LNAPILKLPYHCTMKTSTEVCKLPAKGGRRGYKWPSLSELHQFLFEEPFEHAHDASADVR 177 Query: 171 ATAFCFDMLR 180 A C+ L+ Sbjct: 178 ACMRCYLELK 187 >UniRef50_C0YRX4 Possible DNA-directed DNA polymerase III n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YRX4_9FLAO Length = 184 Score = 103 bits (258), Expect = 3e-21, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 28/184 (15%) Query: 4 QLIVVDLETTGLDYDTAL---PVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEING 59 +D ET T E+G+ V + + I + ++G Sbjct: 2 DFCAIDFET-----ATHEKSSACEMGICVVQDSKIVETKTWLIKPPSFPYFSKFNIAVHG 56 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + W E QD + G+ N FD++++ Y M Sbjct: 57 IQPEDVKDA----PTFDEIWYEAQDMMYGSLMIAHNAGFDASVLRGCLEHYGM------- 105 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC---- 175 + +L L + K + + GL +AE + H A DA A Sbjct: 106 ---FTPKLNYLCSIQLAKKSWNYLPKYGLKPLAEYHKIDFT-HHRAGADAEVCAKISLLA 161 Query: 176 FDML 179 F+ L Sbjct: 162 FEKL 165 >UniRef50_A1VSD3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VSD3_POLNA Length = 550 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 19/183 (10%) Query: 3 KQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +++D ETTGL VE+G + + Q P + ++GY Sbjct: 4 QAWVLIDTETTGLTVPIF--VVELGAQRMRGWLPEGSPFRRLLNQNLDIPPASSRVHGYT 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDST-IVARQRVTYSMPFSPLTVG 120 L R+ + AV + + + G N +D ++ + + Sbjct: 62 REILERDG---EPAAVVYRDFAAYAGGLPVVAFNLEYDLDEVLLPEWKRLGITP------ 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTE--LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 A A + +DP L + + +P H+A+GD A Sbjct: 113 ----MVTAGFCALRLAQRLLDPVPAGNCKLQTLRQYYRLPERGAHTALGDVETVADLLAK 168 Query: 179 LRH 181 + Sbjct: 169 VLR 171 >UniRef50_C2G0Y5 DNA polymerase III, epsilon subunit n=8 Tax=Bacteroidetes RepID=C2G0Y5_9SPHI Length = 203 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 17/186 (9%) Query: 3 KQLIVVDLE-TTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E T VG++ VD G + + ++G Sbjct: 4 QSFIAIDFELAT---AAYNSVCSVGIVRVDQGVITDEFYSLVKPPKNEYMWQTTRVHGIK 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++D L+ N FD ++++ + + L + Sbjct: 61 PKDTADA----PTFEEIYPKIKDLLQNKKMVAHNEKFDREVLSKTMKACGLDYRELHLPV 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 +W + + L+ E +G+ + N H A+ DA A AF + Sbjct: 117 MWE------CTSKIYR--DKGFKKTKLNLCCEIMGIDL-NHHEALSDAKAAAFLYLKQNE 167 Query: 182 TAAAHL 187 L Sbjct: 168 VTQELL 173 >UniRef50_Q2S3Z9 Exonuclease, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3Z9_SALRD Length = 249 Score = 102 bits (256), Expect = 5e-21, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 55/183 (30%), Gaps = 20/183 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEI 57 + + L+ DLE TG D A +++G+ G +L + V+ ++ Sbjct: 4 LERPLVFFDLEATGTDPQAARIIQIGMQRFVPSGDGAALDETIDVLVDPQEEIPAAVTDL 63 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSP 116 G + L AG N A+D ++ + + Sbjct: 64 TGLSP----DAVRQAPPLGAHLDRIAPLLADADLAGYNALAYDIPLLQAEFERHGRTLPG 119 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFC 175 V L Y ++ L A+ ER G + + H A+ D A Sbjct: 120 PDDRVV-------LDPYRLEQVLRPR----TLSALYERYTGDALDDAHDALSDVEAAGRV 168 Query: 176 FDM 178 Sbjct: 169 LQR 171 >UniRef50_C7U038 Putative uncharacterized protein n=1 Tax=Ostreococcus tauri virus 1 RepID=C7U038_9PHYC Length = 446 Score = 102 bits (256), Expect = 5e-21, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 50/199 (25%), Gaps = 27/199 (13%) Query: 5 LIVVDLETTG------------LDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAAD 51 + D ET G L V + + + + + Sbjct: 8 YVAWDTETCGIPKTRVRPTRENLSKFDDARIVSLSAVKFSS-RGREIDTFNRIIKPIGYQ 66 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN--TFAGSNPAFDSTIVARQRVT 109 A I+G + A+ E +++ N FD I+ + + Sbjct: 67 VGATHIHGITHEYAEEHGVP---FKTAFQEFIEFIGDRCNILCAHNSLFDEGIIGHELLR 123 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGD 168 + + + + + L + + G N H+++ D Sbjct: 124 IGLDPNK---DFLDKYIFNCTHEMYKKRFL----SSIKLTNLYKDIFGKEFDNAHNSLAD 176 Query: 169 AAATAFCFDMLRHTAAAHL 187 A A + L L Sbjct: 177 ARACGQVYPYLMGNTKREL 195 >UniRef50_A5UAG1 Ribonuclease T n=251 Tax=Proteobacteria RepID=RNT_HAEIE Length = 229 Score = 102 bits (255), Expect = 7e-21, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 24/189 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV------PHITVEQLAAADPKAMEING 59 +++D+ET G D +E+ + + E+ Y HI + A +P++++ NG Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 60 YYERGLYREALTEQQTAVAWGEVQDW------LRGNTFAGSNPAFDSTIVARQRVTYSMP 113 R A++E ++ + + N AFD + V + Sbjct: 83 IDIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERTGVK 142 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAA 171 +P ++ D A+ A L A +P HSA+ D Sbjct: 143 RNPFHPFGMF-----DTASLAGLMFGQTVLVKACLAA-----KIPFDGKQAHSALYDTER 192 Query: 172 TAFCFDMLR 180 TA F + Sbjct: 193 TAELFCYMV 201 >UniRef50_B3EM65 Exonuclease RNase T and DNA polymerase III n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3EM65_CHLPB Length = 159 Score = 102 bits (254), Expect = 8e-21, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 16/122 (13%) Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E ++ + N +FD + + + + Sbjct: 8 ITNEMLKDK----PCCEEVMLEFSGFIADHNIVAHNASFDRRFLDSELKRANRKYEGSCC 63 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDM 178 + + + L + G+P H A+ DA TA+ + Sbjct: 64 -----------CSLLLSRRVYQDSPNHTLQTLVSHAGIPETGTFHRALADAEMTAYLWLS 112 Query: 179 LR 180 + Sbjct: 113 MI 114 >UniRef50_C7LT45 Exonuclease RNase T and DNA polymerase III n=4 Tax=Bacteria RepID=C7LT45_DESBD Length = 177 Score = 102 bits (254), Expect = 8e-21, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 19/175 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ + +D ET D VGL V GE + + + + P + ++G + Sbjct: 4 SRAYVAIDFET--ADSCRDSACAVGLTKVQGGEIVDRLYGLIRPPRSRFSPFCVNVHGIH 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W E +L G A N +FD +++ +P L Sbjct: 62 ----WSDVKDAPAFREFWIENAGFLEGADFLAAHNASFDRSVLGACCTMAGLPAPSLP-- 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 A + N+ PT L V LG+ + N H A DA A A Sbjct: 116 ------FVCTVELARNQWNLRPT---KLPDVCRHLGLDL-NHHHAGSDAEACARI 160 >UniRef50_C4LJG9 Putative DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJG9_CORK4 Length = 256 Score = 102 bits (254), Expect = 9e-21, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 12/179 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES---LYFVPHITVEQLAAADPKAMEINGY 60 L+ VD+ETTGLD D + VG++ ++ + + + ++ I+G Sbjct: 63 PLLAVDVETTGLDADRDRLLSVGMVAINGRAIPLATADHWLVRYHEGDVSVGQSATIHGI 122 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTV 119 + L + +V + G + ++ +P+SPL V Sbjct: 123 TDSQLENG----RSLLDILTDVVNAAAGRALLAHLALIEHDFISTACERAVGVPWSPLCV 178 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L +A + G+ L G+P + H+A+ DA A A + Sbjct: 179 VDTMD--LERRSAVSFGRR--PGRGEVRLMNARYSRGLPSYHNHNALVDALACAELYLA 233 >UniRef50_Q47UC9 Exonuclase n=2 Tax=Alteromonadales RepID=Q47UC9_COLP3 Length = 228 Score = 102 bits (254), Expect = 9e-21, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 17/187 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGE-SLYFVPHITVEQLAAADPKAMEINGYYE 62 +++ VD ETTGL+ + VG L + + SL H ++ A + + I+ + Sbjct: 43 EILAVDFETTGLNAKQDKLLSVGFLTLKKQQMSLKTSYHQIIKTKAQLEESNVIIHHITD 102 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR-VTYSMP--FSPLTV 119 + Q A+ + L G + +A Y M F + Sbjct: 103 SQKEQG----QALAIVVEALLKALAGKVMLVHFARIERQFLAEACYELYGMAPIFPMIDT 158 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + RL + L + +P + H+A+ DA ATA F + Sbjct: 159 LALAKRRLD-------KRDVAYDPSELRLTNLRNNFQLPEHHAHNALNDAIATAELF--M 209 Query: 180 RHTAAAH 186 + A+ Sbjct: 210 AQMSKAN 216 >UniRef50_D1Y3R1 Putative DNA polymerase III PolC-type (PolIII) n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3R1_9BACT Length = 351 Score = 102 bits (254), Expect = 9e-21, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 62/185 (33%), Gaps = 17/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+E+ G Y P+E+ + G+ L + ++A ++ G Sbjct: 15 YVVLDVESQG--YARFCPIEISAVRFAPDGQCLDAYSSLVRPRVARVSRYVSDLTGITTD 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAF-DSTIVARQRVTYSMPFSPLTVGRV 122 + R L G ++D++ + G A D I+ Sbjct: 73 MVRRAPLPR----EVIGSLRDFIGDSVIVGHAVAENDLPIIDHFCQELYHARLE------ 122 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D +A T L A+AE + H A D TA + +L H Sbjct: 123 --NLYVDTFYWAQALFPALGTGHYNLKALAEHFVIDAQTFHRAEADCRTTARLYQIL-HD 179 Query: 183 AAAHL 187 AA L Sbjct: 180 AAQRL 184 >UniRef50_D2EFA4 Exonuclease RNase T and DNA polymerase III n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFA4_9EURY Length = 199 Score = 102 bits (254), Expect = 9e-21, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 24/188 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IVVD+ET+G + +G ++ E F +E+ +A+ +NG+ + L Sbjct: 2 IVVDIETSGTSPYNHSILSIGAVDFSNPER-QFYQECQIEKDKEYTEEALNVNGFKKEEL 60 Query: 66 YREALTEQQTAVAWGEVQDWL---RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 ++ E W+ + T G N FD+ + Y++ FS Sbjct: 61 TD--PKKKTLESVLNEFIVWIQPVKDKTIGGHNVNFDANFLNYSFKKYNINFS------- 111 Query: 123 WHHRLADLAAYA----AGKLNIDPTELEGLDAVAERL-----GVPVVN-RHSAIGDAAAT 172 + HR+ D + + PT+ E + G+P H+A+ A Sbjct: 112 FGHRVIDTHSLVYASLLSRHIDPPTKNEK-TDINSDYVFNYAGLPPEPKPHNALNGAKME 170 Query: 173 AFCFDMLR 180 A L Sbjct: 171 AEALSRLI 178 >UniRef50_C9YB77 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB77_9BURK Length = 307 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 64/173 (36%), Gaps = 27/173 (15%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF------VPHITVEQLAAADPKAME 56 K ++V+D ETTGLD +E+ LL VD + V + A P+ + Sbjct: 37 KTILVLDTETTGLDQAKEKIIELALLRVDIDTATGLPVGPVQVYDGLEDPGKAIPPEVVA 96 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 I G + + +AL E + A V + N FD V + P Sbjct: 97 ITGIQDADVQGQALDEARVAELMQGV------DVVIAHNAGFDRPFVESRL--------P 142 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 W ADL + G+ L+++A+ LG+ + H A D Sbjct: 143 AFAALPWACSFADLDWKSLGR------SSAKLESLAQELGL-FYDAHRAEMDC 188 >UniRef50_Q1J224 Exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J224_DEIGD Length = 188 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 8/185 (4%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEING 59 + + +I VD ET G D + VGL+ + + H+ V + +AM +NG Sbjct: 10 LTQPIIFVDTETGGRDPARHPLLTVGLVTLTPQGEVTRPLHLRVRHEHYEVEEEAMAVNG 69 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + A ++ A A + G N A+D + F Sbjct: 70 IDLATHHATAQAPEEVAEAVRAYARAVGRVMLGGHNLAYDLGFLRWLLPDLKSIFRR--- 126 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 GRV A +A + LD +A+ G+ H A+ DA TA+ + L Sbjct: 127 GRVDTKLTAQFLLHAG---ILPRKVGTPLDQLAKYFGL-AYQAHDALEDARVTAWVYAEL 182 Query: 180 RHTAA 184 A Sbjct: 183 LRLTA 187 >UniRef50_Q3JDE1 Exonuclease n=4 Tax=Gammaproteobacteria RepID=Q3JDE1_NITOC Length = 205 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 17/183 (9%) Query: 1 MAKQLIVVDLETTGLDYDTA---LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 + IV+D ETTGL D V +G+ V E V +A I Sbjct: 12 LPDDYIVLDTETTGL-PDENGLPDIVTLGITVVSNREIAESVEF-KTRPQKRISEEAQSI 69 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + W ++ ++L+ N +FD I+ + + + + Sbjct: 70 HGITNKQAAA----FDSFDSQWQQISEYLKHQLIVIHNASFDWPILLDHVLRHGLAMPEI 125 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-----VNRHSAIGDAAAT 172 +A LD + + LGV H A D+ Sbjct: 126 QGVFCSQKAAI---PWAQAMDLPCSHRGPSLDTLTKALGVEDLRVKEDGLHGAKIDSRQL 182 Query: 173 AFC 175 A Sbjct: 183 AQV 185 >UniRef50_B7GKP6 3'-5' exonuclease related protein n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GKP6_ANOFW Length = 240 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 39/176 (22%), Gaps = 17/176 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 I++D ETTG + L GE L + + G Sbjct: 57 TFILLDTETTGFSPQRGDEIFSLAALKTKNGEPLDLYC-SNFRPKRRIPEHVVTLTGITN 115 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + +L + G + D + Sbjct: 116 DDVAYA----PLLEEEIHHILSFLNHSILLGYHIQHDVAFLNEFLSRNYRTVLQQ----- 166 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 I LD + ++RH+A GD + + Sbjct: 167 ------TTIEMRKIMECIYHESFPTLDDALSFYHLTPIDRHTAKGDVMSLFEMWKR 216 >UniRef50_B8F0B3 Exonuclease RNase T and DNA polymerase III n=2 Tax=Thauera sp. MZ1T RepID=B8F0B3_THASP Length = 201 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 14/179 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTGL D A VE+ +++ L V +A I+G + L Sbjct: 23 LILDTETTGLG-DDAEVVELAVIDCAGAVLLD----TLVRPSGPVPAEAAAIHGITDAML 77 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + G N FD ++++ Y + + Sbjct: 78 AGA----PTWSELHARFCGLVEGRQVVIYNHEFDVRVISQTARRYGLQAPQGFDQVLDPG 133 Query: 126 RL-ADLAAYAAGK----LNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ + AYA + + L A A++ GV V N H A+GD T + Sbjct: 134 RIHCAMQAYAEFRGEWSAEKGQYRWQKLSAAAQQQGVTVENAHRALGDCLMTLGVVRAM 192 >UniRef50_Q04DG0 DNA polymerase III, epsilon subunit or related 3'-5' exonuclease n=3 Tax=Leuconostocaceae RepID=Q04DG0_OENOB Length = 177 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 18/175 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D ET + +A V +GL V + + ++ + EING Sbjct: 3 FLAMDFETASSEPWSA--VSLGLTIVRDNQIAQ-NWYSLIKPETSFSYWNTEINGLT--- 56 Query: 65 LYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + L + W ++++ G N FD+ ++ + Y + Sbjct: 57 -ADDVLDSPKFPEVWADIKNLYDDYPVVVGHNVRFDNNVLKQTLKYYG----------LK 105 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R L + + LD V LG+ + + H+A DA A+A Sbjct: 106 TPRYLSLDTVSLPRKFQPGMVNHKLDTVVSDLGLFLEHHHNASDDAQASAQILIY 160 >UniRef50_C3WAY8 Predicted protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAY8_FUSMR Length = 474 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 58/184 (31%), Gaps = 22/184 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 I+V LETTGL++ +++ + ++ G + F I + +A ING Sbjct: 7 YIIVSLETTGLNHLVDEILKIEAIRIENGNIVDTFKEFIKPK--FEIPKEASRINGITFE 64 Query: 64 GLYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + +++ +G+ N F S + Y + Sbjct: 65 DVKN----SPSIEDVLDKFKNFRKKGDILVAYNAEFVSKFIGFNFKRYK--------NSI 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + H DL + + L VA L + N+ L++ Sbjct: 113 FSHEFIDLLSLV--RYIYKNIPSYNLKYVATYLKIDSTNK----DKTIICYEILKNLKNK 166 Query: 183 AAAH 186 + Sbjct: 167 IGDN 170 >UniRef50_Q1ZEA2 DNA polymerase III, epsilon chain n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZEA2_9GAMM Length = 237 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 9/175 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 +VVD ETTGL + +G + + + + HI + + + IN + Sbjct: 50 FLVVDFETTGLIAKYNDIISIGWVEISNLQVVCASQEHIYINNDKKINHETAVINHIVPQ 109 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + +G + + Y F+ + +W Sbjct: 110 MLRQGV----SLHDAINALLIKAKGKILVVHGKVIEQCFLDFYMHQY---FALPKIPLLW 162 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + + A + + + L + R +P H+A+ D+ +TA Sbjct: 163 IDTLL-IEKWRAVQKGMTLAQDNRLGSARIRYNLPQYTAHNALIDSISTAELLLA 216 >UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsilonproteobacteria RepID=A8EU91_ARCB4 Length = 247 Score = 100 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 12/180 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D ETTG ++ G + VD G+ F + +AME++ Sbjct: 4 YVLFDTETTGA-AQEDRVIQFGAMIVDNKGKVEAFDELCSAPIPIKL--EAMEVHNITPD 60 Query: 64 GLYREALTEQQ-TAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + E+ N N FD ++ ++ + + + R Sbjct: 61 LLENKPKAVETNFYKRLEELNS--DENYLIAHNINFDLDMIKKE--GFENSYKLIDTLRC 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDA-VAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 H +DL Y + +L + A + G+ + H AIGD L Sbjct: 117 AKHLFSDL-PYHRLQYLRYALDLYKFEENEASKYGITI-KAHDAIGDVLVMKLFLSKLVG 174 >UniRef50_Q15YI0 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15YI0_PSEA6 Length = 224 Score = 100 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 11/185 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +DLE T LD + + +G + + + V A+ ++ I+G Sbjct: 28 PFLCIDLELTSLDLNDTKILSIGWVEGKGKQISLQSCYYQVISTTASLNQSPVIHGLTAD 87 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + Q +A ++ + + + D T++ ++P + Sbjct: 88 HIAQG----QPLRIALEALKQFASSHVWVFHCTHLDMTVLNGVFKKLNIPLPTVVTLD-- 141 Query: 124 HHRLADLAAYAAGKLNIDPTELEG-LDAVAERLGVPVVNRHSAIGDAAATAF-CFDMLRH 181 Y K P L R +P V H+A+ DA AT F ++ Sbjct: 142 ---TLRFGLYQLTKNLRPPPPNAVVLPVCRARYNLPAVPAHNALDDAMATLELLFAQIQK 198 Query: 182 TAAAH 186 A + Sbjct: 199 FAPKN 203 >UniRef50_B2A6Q7 Exonuclease RNase T and DNA polymerase III n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6Q7_NATTJ Length = 170 Score = 100 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 15/146 (10%) Query: 30 VDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN 89 ++ GE + + P + I+G + E + W E+ +L N Sbjct: 1 MEAGEIIEKQHWYIRPKPFYFHPYNVYIHGIKPE----DVRDEPDFSEIWREISTYLENN 56 Query: 90 TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLD 149 N +FD +++ L + + + + L + + GL Sbjct: 57 LVVAHNASFDISVLRH----------VLDLYDLDYPQFDYLCTKKLAEKQWPHLDKYGLK 106 Query: 150 AVAERLGVPVVNRHSAIGDAAATAFC 175 ++A+ L V H A+ DA A A Sbjct: 107 SIAKFLDVK-FKHHDAMEDAYACAQI 131 >UniRef50_C1AA06 Exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AA06_GEMAT Length = 323 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 55/177 (31%), Gaps = 27/177 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITV----EQLAAADPKAMEINGY 60 +VVD+ETTGLD + +E G + D GE + H + + +A I G Sbjct: 50 LVVDVETTGLDTARDVIIEFGAVPFDFDGEGRVYTVHPPLSYFEDPGRPIPAEASAITGI 109 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + + A + N FD ++ R+ P Sbjct: 110 TDDDVRGKRIDDAAVLAALDQ-------AVLVIAHNAGFDRRMLERRL-----PAFAAKH 157 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + + LD + R+ H A D AT Sbjct: 158 WACSQQEVP---------WVRFGSRSQKLDYLLYRIARAFHTGHRAADDCLATLHLL 205 >UniRef50_C6XJL2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJL2_HIRBI Length = 298 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 53/176 (30%), Gaps = 30/176 (17%) Query: 8 VDLETTGLDYDTALPVEVGLLNVD---TGESLYF----VPHITVEQLAAADPKAMEINGY 60 +D ETTGLDY A +E+ L+ + G+ + F + + + ++ G Sbjct: 45 IDTETTGLDYREAELIEIALVPFEYSTEGKLVTFGKALDQFQQPKSPIS--EEITKLTGI 102 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + E + N AFD + F Sbjct: 103 TNEMVAGQKIDIPAVEQLIKE------SDLIIAHNAAFDRPF----AERLTPAFK----A 148 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + W L D+ + E L +A G H A D AT Sbjct: 149 KPWACSLVDID------WKEEGYESPKLSFLAMEHGF-YYKAHRADIDCWATIKLL 197 >UniRef50_B9YE07 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YE07_9FIRM Length = 187 Score = 100 bits (250), Expect = 3e-20, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 19/174 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 + +D ET +A VGL D GE ++ + A P ++I+G Sbjct: 2 KWAAIDFETANPSPMSA--CAVGLTVFDEGEMVFSDSWLIRPHPYYDAFYPSFIDIHGIT 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++ WL G N FD ++A Y R Sbjct: 60 PDQVADA----PFFPKVYEQLKPWLDGGVLCAHNAGFDMKVLASCCSLY----------R 105 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + + L+ V + +G+ + + H A DA A Sbjct: 106 LELPDAPYFCTVKLSRKVYPYLKHHRLNDVCDYMGIQL-DHHDAGSDARGCALI 158 >UniRef50_A1RGY9 Exonuclease, RNase T and DNA polymerase III n=20 Tax=root RepID=A1RGY9_SHESW Length = 301 Score = 100 bits (250), Expect = 3e-20, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 29/190 (15%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNV----DTGESLYFVPHITV--EQLAAADPKAM 55 + ++++D ETTGL D +E+G++ V + V I++ + Sbjct: 49 ERPMVLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELIT 108 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPF 114 E+ G + + + + + V WL + N FD ++ Sbjct: 109 ELTGITDDMVQGQHIDD-------SLVASWLSDDPLVVAHNAQFDRPFFEKRFAALG--- 158 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 L+ + + E L+ + RLG H A D A A+ Sbjct: 159 -----------HLSWACSASGIDWKALGFESRKLEYLLLRLGW-FYEGHRAATDCFAMAW 206 Query: 175 CFDMLRHTAA 184 F +L + A Sbjct: 207 LFHLLPESVA 216 >UniRef50_Q6UAU3 Gp39 n=1 Tax=Klebsiella phage phiKO2 RepID=Q6UAU3_9CAUD Length = 202 Score = 100 bits (250), Expect = 3e-20, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 19/189 (10%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTGL D +E+ ++N+ + + V+ P+A +IN + Sbjct: 22 VIIDTETTGL-MDFDEIIEITIINMRG----EILLNSLVKPSRPIPPEATKINHITNEMV 76 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT------YSMPFSPLTV 119 + + V + + N +FD+ ++ + + + Sbjct: 77 ADA----PTWSDVFPAVLKIIWKYKWLAWNSSFDARLMVQSCLKTWFFDDLKPHRITSII 132 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELE----GLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + A Y D L A R GV H A+ D Sbjct: 133 MAIETRHIDAKAVYDQWYGEFDEKRKNFKRQSLATAAARHGVSTAGAHRALADCLMILGV 192 Query: 176 FDMLRHTAA 184 + + T A Sbjct: 193 LNQICQTEA 201 >UniRef50_Q2QCR8 Putative uncharacterized protein n=1 Tax=Pseudomonas sp. CT14 RepID=Q2QCR8_9PSED Length = 197 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 51/172 (29%), Gaps = 9/172 (5%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYR 67 +D ETTG+ D E+ +D + I Q A +A I+ + Sbjct: 16 LDTETTGVG-DGDEVCEI--TILDASGTPLLNTLIRPTQPIPA--EATGIHRITNDMVA- 69 Query: 68 EALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRL 127 T + + G T N +FD ++++ + + L Sbjct: 70 ---TAPAWPEIAEQYASIVSGRTVVAYNASFDERLLSQTHQRHGLVAPALATACAMLLYA 126 Query: 128 ADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + G+ L A GV H ++ DA T L Sbjct: 127 EWHGEWVEGRYGAWQWRWIKLIEAARACGVLEDGAHRSLADARMTLGVLRYL 178 >UniRef50_D1N0X4 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0X4_9BACT Length = 268 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 6/128 (4%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + L+V D+E+TG+ VE+ +L + + P A I+G Sbjct: 7 LERPLVVFDIESTGVMPQRDRIVEIAVLKIFPDGHTQNTVR-RLNPEMPIPPGATAIHGI 65 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTV 119 + + + ++ ++ AG N FD ++ + F Sbjct: 66 SDADVAD----CPTFLLIAEKLFRYIEDCDLAGYNITGFDIPMLEAEFKRAGFTFKVDDR 121 Query: 120 GRVWHHRL 127 + + + Sbjct: 122 KVIDAYNI 129 >UniRef50_C5NYM3 ATP-dependent helicase DinG homolog n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYM3_9BACL Length = 616 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 53/182 (29%), Gaps = 19/182 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K VVD+E T D ++ +D + ++ E+ G Sbjct: 1 MNKLFCVVDIELT----DDKEIIQFSATKLDENFREILSINYYIQPKKQVSTFVTELTGI 56 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L+ + E+ ++++G+ D I+ ++ Sbjct: 57 SNEMLHDK----PFFEDVAHELYNYIKGDILVCHGLPSDYVILKKRFHDVG--------- 103 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDML 179 + + L +L + L ++ LG+ H+A D T + Sbjct: 104 -ILYKAKLSLDTVELSRLFLPSQTSYRLSDLSNSLGLYTGDQYHNAAIDVKVTVKLLKEI 162 Query: 180 RH 181 Sbjct: 163 AR 164 >UniRef50_A6GQ42 DNA polymerase III subunit epsilon n=1 Tax=Limnobacter sp. MED105 RepID=A6GQ42_9BURK Length = 308 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 27/179 (15%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI------TVEQLAAADPKAMEI 57 +++VVD ETTGLDY T +EVG + ++ + + + E A P+ I Sbjct: 45 KVLVVDTETTGLDYATCEVIEVGAVLIEVDQDTGAIGAVLGTFGGLEEPKVAITPENSAI 104 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + Q+ A + F N AFD + R+ P+ Sbjct: 105 HGITNEMVKG-----QRFDEAALKALC-SEAALFVAHNAAFDKPFMLRRF-----PWLEK 153 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 ++ L +G+ L H A+ D A Sbjct: 154 SIWACTFRELPWTQENYSGRKLE-----YLLSD-CGYFH----GAHRAVEDCNALVHVL 202 >UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellular organisms RepID=A5FKC9_FLAJ1 Length = 1510 Score = 99.7 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 22/194 (11%) Query: 5 LIVVDLETTGLDYDTA----------LPVEVGL-LNVDTGESLYFVPHITVEQLAAADPK 53 ++ D ETTGL +++ L+ + G+ + ++ + Sbjct: 2 YLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLIEHQDYLVKPEGFNIPYD 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQRVTYSM 112 A I+G + + A + + G N FD I+ + + Sbjct: 62 AERIHGISTELAEADGI---TLAEVLEKFNIALSKTKFIVGQNLGFDVNIMGAEFHRMGV 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAE----RLGVPVVNRHSAIGD 168 ++ + + +L L + E P H+A D Sbjct: 119 ESQMASMPVLD---TCTEVTASLLQLPGGRGGKFKLPTLTELHSYLFDQPFAEAHNATAD 175 Query: 169 AAATAFCFDMLRHT 182 AT CF L Sbjct: 176 VEATTRCFLELVRR 189 >UniRef50_UPI0001AEBC71 putative DNA polymerase, exonuclease activity n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEBC71 Length = 229 Score = 99.7 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 60/177 (33%), Gaps = 16/177 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L VDLE T LD T +G ++ G+ V +A ++ I+G Sbjct: 32 PLASVDLELTSLDPVTTQITSIGYVSGSAGKITLSSSGYHVINTSADLGQSPVIHGLTLD 91 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + A A + L+ + N D + +P + Sbjct: 92 ILQQG----EGLADAINSLLPLLKTHVLIFHNARLDLMALDSAFKRCGLPQMEV------ 141 Query: 124 HHRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 D A +LN P+ L +RL +P H+A+ DA AT F Sbjct: 142 --LYLDTLQLALYQLNKQHQVLPSNSATLTVCRQRLDLPAFPEHNALDDALATMQLF 196 >UniRef50_C7JDE1 DNA polymerase III exonuclease epsilon subunit like protein n=8 Tax=Acetobacter pasteurianus RepID=C7JDE1_ACEP3 Length = 343 Score = 99.7 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 31/181 (17%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYF------VPHITVEQLAAADPKAMEING 59 + VD+ETTGL D V + ++ + +S + + + P A I+G Sbjct: 134 LFVDVETTGLHSD-DQIVSICMILLYADKSQELQKLTYKSLYYIFDPCKKSHPIAEGIHG 192 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 Y + L + L + ++ + N FD + + + Sbjct: 193 YNDWTLRHQNL----FEEKMEHILSFIEESDVIVAHNVNFDMKFIRNSFANAKIDIGKIG 248 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFD 177 + + + L A ++RLG+ H A D + Sbjct: 249 T-------MCTMEMHGG-----------SLSACSKRLGIQRKTSIHDAAEDVLMCMCLYL 290 Query: 178 M 178 Sbjct: 291 E 291 >UniRef50_B9NP01 Exonuclease n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NP01_9RHOB Length = 334 Score = 99.7 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 56/175 (32%), Gaps = 22/175 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D+ET + D + ++G V G+ + + DP + I+G Sbjct: 45 RFVALDVET--ANSDASSICQIGFA-VSDGQGTILTFGTLIHPETSFDPFNIGIHGID-- 99 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 T + +L + +FD V Y +P W Sbjct: 100 --ADAVSTAPVFPEVLQTFRAFLERHPLVQH-SSFDKRAVNAACDRYDIPKLRSN----W 152 Query: 124 HHRLADLAAYAAGKLNIDPTE---LEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 H + + + GL + E LG+ + H AI DA A A Sbjct: 153 H------DSVVMARRAWPELKGNGGHGLANLKEVLGLE-FDHHDAIEDAKAAAHV 200 >UniRef50_D0I3G5 Putative exonuclease n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I3G5_VIBHO Length = 198 Score = 99.7 bits (248), Expect = 5e-20, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 15/178 (8%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYR 67 +D ETTGL + A E +D ++ I + A +A I+G + Sbjct: 28 IDTETTGLG-EDAEICEFAA--IDGRGNVLINTLIKPSKPIPA--EATAIHGITNDMVE- 81 Query: 68 EALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV-ARQRVTYSMPFSPLTVGRVWHHR 126 T G + L A N +D ++ +++ + + Sbjct: 82 ---TAPTWLEVEGMIAGLLVSRPVAIYNAEYDIRVIWQTSMISHGKDRAVPDELERSINA 138 Query: 127 LADLAAYAAGK----LNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDML 179 + YA + + L A A GV V N H A+ D T + Sbjct: 139 TCIMLEYAEYRGEWCDSRHQYRWHKLTAAAAHEGVTVEENAHRALADCRMTLGLIKAM 196 >UniRef50_B4TI94 Exonuclease n=2 Tax=root RepID=B4TI94_SALHS Length = 198 Score = 99.7 bits (248), Expect = 5e-20, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 14/183 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTGL D A VE+ + +D+ + + + +A+ I+G + Sbjct: 25 LFIDTETTGLG-DDAEIVEICI--IDSHGFILLNTLVKPTKPIP--DEAIAIHGITNEMV 79 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 A E+ F N +D ++ + P + H Sbjct: 80 AYA-PAWTDICGAVEELIRRFG---FVIYNADYDLRLIRQTYALNGRPSEGAPWM-LAAH 134 Query: 126 RLADLAAYAAGK---LNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLRH 181 + + YA + + L A GV + H A+ D T L Sbjct: 135 SVCAMKLYAEYRGEPGKYHGYKWHKLVDAAAHEGVVIEGKAHRALADCKMTLGVIKALAQ 194 Query: 182 TAA 184 A Sbjct: 195 GGA 197 >UniRef50_A2CAY4 Possible DNA polymerase III, epsilon subunit n=19 Tax=Cyanobacteria RepID=A2CAY4_PROM3 Length = 321 Score = 99.7 bits (248), Expect = 5e-20, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 54/180 (30%), Gaps = 21/180 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVD--TGESLYFVPHITVEQLAAADPKAMEINGYYE 62 L+++D ETTGLD +EVG + L + + A IN Sbjct: 91 LLIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPVE----TNAAESINRI-P 145 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + R +Q + + D N FD F + V Sbjct: 146 AEVTRLDQPWRQGLDYFQALLDAAD--LLVAHNAGFDRQW-----------FGKDQLPAV 192 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + A ++ + +A GVPV H A+ D A F + Sbjct: 193 SKPWLCTMEDIAWP-VDRQLRSRPSVRDLALAYGVPVWAAHRALTDCIYLAEVFARCKDL 251 >UniRef50_D1PSL1 Putative DNA polymerase III, epsilon subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSL1_9FIRM Length = 318 Score = 99.3 bits (247), Expect = 6e-20, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 16/177 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D+ETTGLD++ ++V +L++DTGE L ++ P+A +N + + Sbjct: 120 VSIDIETTGLDFNQDEILQVSILDIDTGEVL-LDSYVKPY-FTEDWPEARRVNHITKEMV 177 Query: 66 YREALTEQQTAVAWGEVQDWLRG-NTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + L T G N FD+ + Y F+ T+ Sbjct: 178 CNA----PYIYELLPRLNQVLAQVKTIVGYNFTGFDNGFL----TRYGASFNDETIVEDL 229 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATAFCFDM 178 + A + Y + + L A+ G H+++ D ATAFC+ Sbjct: 230 SNIFAAI--YGEFSPKHGDFKFKNLSTCADYFGYDWGEETAHNSLADCRATAFCYKK 284 >UniRef50_A2PLZ2 Gp39 n=2 Tax=Vibrio cholerae RepID=A2PLZ2_VIBCH Length = 185 Score = 99.0 bits (246), Expect = 6e-20, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 62/174 (35%), Gaps = 12/174 (6%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I++D ETTGLD D A +EV +++ TG LY V L + P+ I+G + Sbjct: 10 IILDTETTGLDSD-ARILEVSIIDAQTGIKLYSS---LVNPLCSISPEVTAIHGITNDMV 65 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 W +++ +L + N FD + A+ + P + L Sbjct: 66 IDM----PTFDKVWNDIKGYLSDSVIYVYNLDFDYRMFAQSLRPFGYPVANLVHFFGGGV 121 Query: 126 RLADLAAYAAGKLNIDPTELE--GLDAVAERLGVPVVN--RHSAIGDAAATAFC 175 + A G L + L + V + H A+ D T Sbjct: 122 CVMRWYANFYGSLCGNDVTPRFQRLTNACYQQDVDTSDLTAHRALADCEMTRRL 175 >UniRef50_C0W5G3 Possible DNA polymerase III subunit epsilon (Fragment) n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W5G3_9ACTO Length = 174 Score = 99.0 bits (246), Expect = 7e-20, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 36/122 (29%), Gaps = 8/122 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA----MEINGY 60 VVDLETTGL T +E+GL+ + + A D I+G Sbjct: 49 YAVVDLETTGLSPATDAILEIGLVLTAPDGTPQRTWSTLINPGAGPDGAIEVGPTFIHGL 108 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + L G N FD + + T V Sbjct: 109 LPDDLAGA----PSLDDVADLLVRDLAGRVVVAHNARFDVGFLTQALGTRGHLARGARVP 164 Query: 121 RV 122 RV Sbjct: 165 RV 166 >UniRef50_A7B9H5 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7B9H5_9ACTO Length = 250 Score = 99.0 bits (246), Expect = 7e-20, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 18/186 (9%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYF-------VPHITVEQLAAADPKAMEINGY 60 D ETTG+ V L+ G S V + +A ++G Sbjct: 11 FDTETTGVRALKDRLVTGALVLRIDGASYRSGVSAPDQVATWLTDPGVEIPEQATAVHGI 70 Query: 61 YERGLYREALTEQQTAVAWGEVQ-----DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 R+ E+ WLRG N +D T+V ++ + + Sbjct: 71 TTEQARRDGRP---IEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELRRHRLGSF 127 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG-VPVVNRHSAIGDAAATAF 174 + + L KL+ + L +A G V + H+A D A T Sbjct: 128 EERLEGAPMLIVDPLVLDR--KLDRFRKGKKTLTEMAPVYGAVASPDAHTAEVDVAMTLD 185 Query: 175 CFDMLR 180 + Sbjct: 186 VLAGMV 191 >UniRef50_C6X5Z0 DNA polymerase III alpha subunit n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X5Z0_FLAB3 Length = 1567 Score = 99.0 bits (246), Expect = 7e-20, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 52/192 (27%), Gaps = 17/192 (8%) Query: 5 LIVVDLETTGL-----DYDTA-----LPVEVGL-LNVDTGESLYFVPHITVEQLAAADPK 53 ++ D ETTGL T V++ L+ G L +I Sbjct: 18 YLIFDTETTGLPKNYNAPLTDSDNWPRMVQIAWQLHDRDGNLLENQDYIIKPDGYDIPFN 77 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAG-SNPAFDSTIVARQRVTYSM 112 A I+G + + E E + L+ N FD I + S+ Sbjct: 78 ASRIHGISTKMAHAEGRD---LREVLIEFGEVLKKAEVVAGHNIDFDYKIAGAEYHRQSL 134 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPVVNRHSAIGDAAA 171 + L G + L+ + H+A D A Sbjct: 135 DNILEKIPSADTMEL-GTDYCKLGGGKNGRYKSPKLEELYTTLFNERFDEAHNAAADVNA 193 Query: 172 TAFCFDMLRHTA 183 TA F + Sbjct: 194 TAQIFFEMMRLR 205 >UniRef50_C2UN60 Exonuclease n=4 Tax=Bacillus cereus group RepID=C2UN60_BACCE Length = 288 Score = 98.6 bits (245), Expect = 9e-20, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 24/176 (13%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGL +E+ ++++ G+ L V+ +A I+G Sbjct: 131 FVILDTETTGLTL-RDQIIEISVIDL-AGKILLNS---LVKPTIIIPAEATSIHGITNEM 185 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 ++ Q + E+ + G T N FD ++ + ++ F V Sbjct: 186 IHGA----QSWTTIYQELLEVTVGKTILIYNAEFDLGMIENTCIANNVEFKDFKSTCVMK 241 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L + + +H A D A L+ Sbjct: 242 MYADYVDSKKWI----------SLSDATK-----LTIKHRAAADCFAVLELLQQLK 282 >UniRef50_D0LL62 Exonuclease RNase T and DNA polymerase III n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LL62_HALO1 Length = 308 Score = 98.6 bits (245), Expect = 9e-20, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 24/176 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L+V D+ETTG D +E+ + G+ + A +P A E++G Sbjct: 5 ELLVFDVETTGTDRRRDQIIEL-CVQFGLGDDAP-NRVWRIRPDVAIEPAAQEVHGISMD 62 Query: 64 GLYREALTEQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPF-----SPL 117 L + E+++ + G N +FD ++ + + Sbjct: 63 DLAE----CPRFPEVADELRELFASATVLVGYNVSFDIGMLQAEYERLGQFLDLGGKDVV 118 Query: 118 TVGRVWHHRLADLAAYAAGKL------------NIDPTELEGLDAVAERLGVPVVN 161 R+W +A + L + E G+ + Sbjct: 119 DAFRLWQQCEPRSLQHAHKRFVGSDFAAAHSAAADVAATGRVLSGMLEHFGLADQD 174 >UniRef50_B4RRS4 Putative DNA polymerase, exonuclease activity n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RRS4_ALTMD Length = 226 Score = 98.6 bits (245), Expect = 9e-20, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 54/176 (30%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +DLE T L +G + V A ++ I+G + Sbjct: 33 FAAIDLELTSLQPSKTQITSLGYVEGKGMRISLASSGYHVINTRADLGQSPVIHGLTQDI 92 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L R ++ A + L+ N N D + R ++ + Sbjct: 93 LERG----EELDEALRHLLPLLKRNILIFHNAKLDLMALDRAFKQNNLQTVEV------- 141 Query: 125 HRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 D A +LN P L +RL +P H+A+ DA AT F Sbjct: 142 -IYIDTLQLALYQLNKQHQVLPNNSATLTVCRQRLDLPAFPAHNALDDALATLQLF 196 >UniRef50_Q934V3 Putative uncharacterized protein HCM2.0114c n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=Q934V3_SALTI Length = 185 Score = 98.6 bits (245), Expect = 9e-20, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 20/183 (10%) Query: 8 VDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYYERGL 65 VD+E+TGLD+ +E+ + + + DPKA ++G L Sbjct: 8 VDIESTGLDFTSGHKIIEIAITRYELETQKHIDSLEMRFNPRRSIDPKAQAVHGISLEDL 67 Query: 66 YREALTEQQTAVAWGEVQDWLRGN-TFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVW 123 TE A G++ ++ N AFD + + +Y + + + Sbjct: 68 A----TEPLLADHAGKIAAYMGACSALVAHNGEAFDLPFIRHEFGSYGVKLPDIPLV--- 120 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDMLRH 181 + G + + L+ +A LG HSA+ D CF R Sbjct: 121 -------DSMLDGLWATEDGKRPRLEELAFSLGFTYDREKAHSALYDTDLMMQCFFKARE 173 Query: 182 TAA 184 Sbjct: 174 KYG 176 >UniRef50_A2SL61 Exonuclease n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SL61_METPP Length = 233 Score = 98.6 bits (245), Expect = 9e-20, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 30/192 (15%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNV--------DTGE---SLYFVPHITVEQL----- 47 + IV D+E+ GLD + + + V G + + + Sbjct: 27 RWIVADVESGGLDPRRDPLLAIAAVGVHFAPVQGERGGRRPRIVLGDRFELLLRPSGAPS 86 Query: 48 AAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR 107 A+ D + ++G G R L A A + ++ + G + AFD T++ R Sbjct: 87 ASPDKANILVHGIGI-GAQRAGLDP---AEALQAWESYIGRSPLVGFHSAFDRTLIERA- 141 Query: 108 VTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIG 167 +GR + DL AA LD G+ + RH A Sbjct: 142 -------GRDALGRAPDNPWLDLEHLAAVLHREPRQR--SLDDWLAHHGITCLARHQASA 192 Query: 168 DAAATAFCFDML 179 DA ATA L Sbjct: 193 DALATAQLLLKL 204 >UniRef50_A9CIB7 DNA polymerase III, epsilon subunit n=4 Tax=Alphaproteobacteria RepID=A9CIB7_AGRT5 Length = 202 Score = 98.6 bits (245), Expect = 1e-19, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 17/163 (10%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I +D ET + + VGL ++ G+ + + + P + ++G R + Sbjct: 4 IAIDFET--ANEERGSACSVGLAWIEDGQIVRVEERLIRPRDMRFSPFNIAVHGIRPRDV 61 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + E D G T N AFD +++ Y R+ + Sbjct: 62 EDA----PEFPEVMEEFIDDFHGATMIAHNAAFDFSVMRASFDKY----------RLSYP 107 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 L+ L + + L+ +A L + V H+A D Sbjct: 108 DLSYLCSVKIARHVWPHLVSHKLNVIAHHLQLRFV-HHNAAED 149 >UniRef50_A0Y7J9 Putative exonuclease n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y7J9_9GAMM Length = 255 Score = 98.2 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 15/171 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTGL +TA +E+ +L+ + L V+ A E++G Sbjct: 43 VILDTETTGLS-ETAQLIEICILDFEGNILLNE----RVKPSVKVSKGAREVHGIK---- 93 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 R+ + + + + + G N FD I+ + +++ R W+ Sbjct: 94 ARDLKSCRSWPDVYRDYVEVTAGKNIVAYNAKFDRRIITQTCRAFNLTMKK----RKWYC 149 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFC 175 + + G+ + L A V P + HSA GD T Sbjct: 150 LMLAFSEL-VGRTRYGDYKWHKLSTAAWVFDVPPNDDAHSAYGDCETTLAV 199 >UniRef50_C6MU49 Exonuclease RNase T and DNA polymerase III n=1 Tax=Geobacter sp. M18 RepID=C6MU49_9DELT Length = 314 Score = 98.2 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 61/183 (33%), Gaps = 31/183 (16%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD----TGESLYFVPHIT--VEQLAAADPKAMEING 59 I +D ETTGL++ +E+G++ + +GE + + P+ EI G Sbjct: 57 ICLDTETTGLNHKEDKVIELGIVAFEFDPLSGEIYRISDRYSGFEDPGFPIPPEVREITG 116 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRG--NTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 + + +A A D L G + N AFD V + + Sbjct: 117 ISDEMVRGQA-----FDDA---FVDLLAGKADLVIAHNAAFDRKFVETRFPAF------- 161 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA-ATAFCF 176 +L + + LD + + G +N H A+ DA Sbjct: 162 -------KKLPWACTVCQIDWSAERLSSRTLDFLLFKTGSLTINAHRALDDAEGVLGLLL 214 Query: 177 DML 179 + L Sbjct: 215 ERL 217 >UniRef50_A4AJM3 DNA polymerase III subunit epsilon n=4 Tax=Actinobacteria (class) RepID=A4AJM3_9ACTN Length = 232 Score = 98.2 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 15/172 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + L DLETTG+D +T+ V + VD + + A I+G Sbjct: 4 SGTLATFDLETTGVDVETSRIVSACIALVDASGVVISRWDWLADPGVEIPEGAAAIHGIS 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLR-----GNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 E A+ E+ L+ G N +D +++ R+ YS+ Sbjct: 64 TERARAEGRDA---AIVVAEIVQTLKVTCALGIPLVVYNAPYDLSLLDRECRRYSIDGLR 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + + ++ L+ + GV + + H A D Sbjct: 121 EPYIVIDPLVID-------KAVDRYRRGKRTLEVTSGLYGVALDDAHDAGSD 165 >UniRef50_Q68BL2 DNA helicase RecG n=2 Tax=cellular organisms RepID=Q68BL2_NANBA Length = 1341 Score = 98.2 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 22/192 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IV DLETTGL + PVE+ +G F I + + KA E+ G Sbjct: 137 IVFDLETTGLSKEKDHPVEIAAEAPLSGR--TFSTLIRLADGMSISTKAEEVTGITTAQC 194 Query: 66 YREALTEQQTAVAWGEVQDWL----RGN------TFAGSNP-AFDSTIVARQRVTYSMPF 114 + A+ ++ G N FD ++ + + Sbjct: 195 KD--PSLPTFPQAYASFLRFIEAEMEDAAPGAFPLLVGHNIERFDLPLLLHCAKRFDVA- 251 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATA 173 + L L+A + E L + L + H A D T Sbjct: 252 -----APLSARILDTLSASRSLLTGSAKPEAFNLTTLYGHLTRKEAIAAHRASADVKMTV 306 Query: 174 FCFDMLRHTAAA 185 L +A Sbjct: 307 AVLHALLEHSAG 318 >UniRef50_Q2SC89 Putative exonuclease n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SC89_HAHCH Length = 230 Score = 98.2 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 60/162 (37%), Gaps = 13/162 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 + + D+ETTGL+ + + +G + ++ L + ++ + + I+G + Sbjct: 35 RWVAADVETTGLNIKKDVVIAIGAVEINDLSICLEQSFELLIDADTHLESDNILIHGLSQ 94 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + A + A + G + FD ++ ++ T+ +G Sbjct: 95 QTLSQGAHPK----EAIHSFLSYAHGAALLAFHAPFDKAMLEKEARTH--------LGVS 142 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 D+A + P+ L LD + G+ RH Sbjct: 143 SRLPFYDVAEWLKALCPEAPSHLRSLDDWSHYFGLYNDQRHH 184 >UniRef50_B8GP22 Exonuclease n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GP22_THISH Length = 236 Score = 97.8 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 14/167 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNV--DTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V+D+ETTGLD + + VGL+ V E + ++ D + ++G Sbjct: 41 RFVVIDVETTGLDLSRSELLSVGLVPVGPHGIELGGLDEIVLRREVTRIDKDNLVVHGIS 100 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 A V + + + FD I+ R +G Sbjct: 101 PTESAAGV----DIHEALSSVLERIGKTWLVAFHADFDRIILGRTLRKQ--------LGV 148 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + DLA + L+GLD +P RH A D Sbjct: 149 KLRNPFLDLAMLLPALYSEGTAGLKGLDDWLGHFAIPCPVRHRASAD 195 >UniRef50_D0KYH5 Ribonuclease T n=2 Tax=Gammaproteobacteria RepID=D0KYH5_HALNC Length = 241 Score = 97.8 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 62/202 (30%), Gaps = 50/202 (24%) Query: 6 IVVDLETTGLDYDTA----------------LPVEVGLLNVDTGESLYFVPHITVEQLAA 49 +VVD+ET GL+ T + H+ + A Sbjct: 41 VVVDVETGGLNPQTDALLELAAVLLDVDANGKII----------PVDRIQIHVQPFEGAN 90 Query: 50 ADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWL---------RGNTFAGSNPAFDS 100 +P +M+ING +R AL E A A + + R G N AFD Sbjct: 91 LNPVSMKINGIDIDHPFRCALDE---AEALKQFFQPIRQRVKLNGARRAVLVGHNAAFDL 147 Query: 101 TIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--P 158 ++ +P H + L + T L E +G+ Sbjct: 148 AVINAACERTCNKKNPF-------HPFSTFDTVTLSALAVGETV---LAKALEAIGLEWD 197 Query: 159 VVNRHSAIGDAAATAFCFDMLR 180 H A+ DA TA F + Sbjct: 198 SQQAHGALYDAEQTAELFCRII 219 >UniRef50_B0UVN4 Exonuclease RNase T and DNA polymerase III n=2 Tax=Histophilus somni RepID=B0UVN4_HAES2 Length = 236 Score = 97.8 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 15/179 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D ETTGL+ + V + +D + H V + + IN + Sbjct: 52 YLVIDFETTGLNSMMDNILSVATVPIDNLTLDISKAWHQFVAEQQEIKEDTVIINHILPQ 111 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR-VTYSMPFSPLTVGRV 122 L + ++ + ++G + + V Y++ PL Sbjct: 112 MLNGA----ETLDDTMNKLFELMQGRILIAHGSTIEKRFILHYLNVRYNLSQFPL----- 162 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D L D L + + +P H+A+ DA + F Sbjct: 163 ---FWLDTLKIERS-LCQDNENNYQLSHIRNKYNLPEYIGHNALIDAISAGELFLAQLE 217 >UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 Tax=Clostridium RepID=A6LV05_CLOB8 Length = 976 Score = 97.8 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 58/172 (33%), Gaps = 21/172 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +I +D+ETTGLD + +E+G + V G + I + P + I Sbjct: 12 VIYLDIETTGLDETCSEIIEIGAVKVKNGVITTYNTLI---RPRGRVP--ISIYSLCSDL 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + L+ + EV ++L N F+ ++ + + + Sbjct: 67 KEADLLSARSLNSIKQEVLEFLEDLPLICHNGNFERKFLS------------FYIPEIKN 114 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFC 175 + + + + L+++ + + + H + D+ T Sbjct: 115 TIMD---SMELAIILEPWRKEYNLNSLIKEITNLNKDELHRGLSDSIDTLKV 163 >UniRef50_B8HX99 Exonuclease RNase T and DNA polymerase III n=2 Tax=Chroococcales RepID=B8HX99_CYAP4 Length = 164 Score = 97.4 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 21/172 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D ET + VGL+ V+ + + ++ + I+G Sbjct: 4 FVAIDFET--ANRAKESACAVGLVRVENLQIVQKAYYLICPP--QPHFEFTHIHGIR--- 56 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAG-SNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + W E+ + G F N FD +++ +Y +P Sbjct: 57 -WTDVAAQPTFGDLWSELHPLIAGTDFIAAHNAGFDRSVLHACCNSYGIPRPA------- 108 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 A ++ PT L V LG+ + + H A+ DA A A Sbjct: 109 -QNFICTVQLARRTWSLYPT---KLPDVCRFLGLEL-DHHHALSDAEACAQI 155 >UniRef50_D2MNZ8 Exonuclease n=1 Tax=Bulleidia extructa W1219 RepID=D2MNZ8_9FIRM Length = 186 Score = 97.4 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 21/175 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK---AMEINGY 60 +++ VD+ET D+ + +GL ++ G L + ++ A A+ +++G Sbjct: 3 RVVAVDVETASSDHRS--MCAIGLSVLENG-VLEEAFYSLIKPAANANHFEYFNTKVHGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + ++ L N FD +++ + P +T Sbjct: 60 HPKDVQDA----PTLPEVYPTIKSLLESGIVVAHNAVFDVSVIKNCCLNTGCPVPKVTYF 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + LD VA L +P+ + H A DA A Sbjct: 116 ----------DSVPLSRRAFPLLVNHKLDTVARYLKIPL-DHHHAGSDAYACLAI 159 >UniRef50_C6DYG6 Exonuclease RNase T and DNA polymerase III n=3 Tax=Geobacter RepID=C6DYG6_GEOSM Length = 312 Score = 97.4 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 57/182 (31%), Gaps = 33/182 (18%) Query: 8 VDLETTGLDYDTALPVEVGLLNV----DTGESLYFVPHIT--VEQLAAADPKAMEINGYY 61 +D ETTGLDY +E+G++ +TGE + + + EI G Sbjct: 57 LDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGVPIPEEVKEITGIS 116 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +A + E + + N AFD V + + Sbjct: 117 DDMVRGQAFDDP-FINLLAE-----KSHLVIAHNAAFDRKFVEARFPAF----------- 159 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVA---ERLGVPVVNRHSAIGDAA-ATAFCFD 177 +L + + L+ + L + N H A+ DA + Sbjct: 160 ---TKLPWACTVSQIDWGAERVSSRTLEYLLFKTASLTI---NAHRALDDAEGVLGLLLE 213 Query: 178 ML 179 L Sbjct: 214 RL 215 >UniRef50_C9M2Y5 Putative uncharacterized protein (Fragment) n=1 Tax=Lactobacillus helveticus DSM 20075 RepID=C9M2Y5_LACHE Length = 249 Score = 97.0 bits (241), Expect = 3e-19, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 6/108 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLN-VDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ +D+ETTGLD + +G + + + F I + +I Sbjct: 127 IVALDIETTGLDITKDQIISIGAVKYISKSKCERFYRLIKTD--YEIPTHISKITQLTSE 184 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS 111 L + + + A +++ +L G N FD + R Y+ Sbjct: 185 KLNQSGI---ELFDALEDLKKFLADRLIVGYNLNFDINFLNRDYQKYN 229 >UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Enterobacteriaceae RepID=A4W6Y1_ENT38 Length = 223 Score = 97.0 bits (241), Expect = 3e-19, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 32/182 (17%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 V+D ETTGL+ VE+ +++ G + V+ A +AM I+ E + Sbjct: 4 VIDTETTGLEGGPETVVELASVDIVDG-VICNPMSDLVKPGVAIGFEAMAIHHITEDMVE 62 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + G +L + + N FD + ++ Sbjct: 63 GA----PLLSEVIGR---YLGADAYVAHNAKFDKS-------------------KLPQID 96 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-----RHSAIGDAAATAFCFDMLRH 181 + + + + + LG+ H A+ D TA + Sbjct: 97 APWICTAKLARSLLPEHKSHSNQYLRYSLGLKPEVPEGLYAHRALYDCYVTAELLLYMGR 156 Query: 182 TA 183 A Sbjct: 157 LA 158 >UniRef50_A3JK24 DNA polymerase III subunit epsilon n=1 Tax=Marinobacter sp. ELB17 RepID=A3JK24_9ALTE Length = 294 Score = 97.0 bits (241), Expect = 3e-19, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 49/177 (27%), Gaps = 27/177 (15%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVD----TGESLYFVPHI--TVEQLAAADPKAMEINGY 60 ++DLETTGL +E+GL+ V TG+ V + + EI G Sbjct: 51 ILDLETTGLSAANDKIIELGLVKVRVSPSTGQLTEIVSMLDQYEDPGIPIPAVITEITGI 110 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + L E A A N +FD ++ + Sbjct: 111 TDDMVAGRRLDEGALAQALA------GDGIILAHNSSFDRGFFEKRLPQH-AGRRWACSF 163 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + R + L + H A D A A+ Sbjct: 164 QGVSWRALGFESSKLEYLLLKSGYFYT--------------GHRAEVDCLAVAWLMH 206 >UniRef50_A7RWU1 Predicted protein n=2 Tax=Nematostella vectensis RepID=A7RWU1_NEMVE Length = 461 Score = 96.6 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 24/197 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D ETTGLD + +++ + + G+ L + +A +G E Sbjct: 155 TFVMFDTETTGLDTSNDVIIQLACAS-ENGDPL--HSRYMFPGGRSIGSEATNAHGISEA 211 Query: 64 GLY------REALTEQQTA---VAWGEVQDWL--------RGNTFAGSNP-AFDSTIVAR 105 + ++ A E +L + +FD ++ Sbjct: 212 FIDGSRVLLKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRLLIN 271 Query: 106 QRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDP--TELEGLDAVAER-LGVPVVNR 162 +++ ++ G V + + A + + + E L A+ GVP+ Sbjct: 272 CLKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSPFDSSFKKESLSALHGHLFGVPIDRP 331 Query: 163 HSAIGDAAATAFCFDML 179 H A DA A + + Sbjct: 332 HDAQADACALSKVLMKI 348 >UniRef50_Q6A708 Putative DNA polymerase III epsilon subunit (Exonuclease) n=1 Tax=Propionibacterium acnes RepID=Q6A708_PROAC Length = 236 Score = 96.6 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 28/189 (14%) Query: 5 LIVVDLET----TGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + VD ET G+ +V ++ V G+ + + + + ++G Sbjct: 69 FVAVDFETANRMGGVSA-----CQVAMVKVCDGQIVDRLNTLIRPPKGWDSFEFTYLHGI 123 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTI---VARQRVTYSMPFSPL 117 + V ++ G T N AFDS + + T ++P Sbjct: 124 S----AADVADAPSWTNIADTVSHFVDGVTVYAHNAAFDSRVWRQLDEHFGTTTLPAPFF 179 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 R + L Y + L N H A DA A A Sbjct: 180 CSYRTAQRLIPGLPNYKLPTVLHACAPNYQL------------NHHRADSDAEACALIVC 227 Query: 178 MLRHTAAAH 186 L+ A A Sbjct: 228 ELQRRAQAS 236 >UniRef50_C9LHX7 Exonuclease n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LHX7_9BACT Length = 256 Score = 96.6 bits (240), Expect = 4e-19, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 19/189 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +I D+E TGL VE+ + V + +A +NG Sbjct: 6 LTRPIIFFDIEATGLQIARDRIVELSYIKVFPDGREESKT-LRFNPEMHISAEATAVNGI 64 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + GE+ + AG N FD ++ + F Sbjct: 65 KDEDVAD----CPTFKEKSGELTAIFQSCDLAGFNSNVFDVPMLVEEFARAGSDF----- 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDM 178 + +L D+ E L A + + N H+A+ D AT Sbjct: 116 -DITKSKLVDVQTI------YHKLEPRNLIAAYKFYCNKDLHNAHTAMADTQATYEVLKA 168 Query: 179 LRHTAAAHL 187 L Sbjct: 169 QLDKYGKEL 177 >UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAP0_SULNB Length = 263 Score = 96.3 bits (239), Expect = 5e-19, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 65/190 (34%), Gaps = 11/190 (5%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M L VD+E+TG+D +++ L V + F + + + I+ Sbjct: 1 MTPTLYFVDVESTGVDLKNDRLIQLAFLKVQGDKIEAFNDLCYTD--IEMNDTVVAIHNI 58 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNT---FAGSNPAFDSTIVARQRVTYSMPFSPL 117 L + A+ E++ + F D ++ + + + Sbjct: 59 TNAMLEDK--YWPYETDAFIELEK--GNSPANYFIAHGNELDVAMLEHE--ELILEMQKV 112 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + L + +Y L + +A+A+++G+ ++ H A+ DA F+ Sbjct: 113 DTDKCARLLLKEAGSYKLEDLITRYKLTQKAEAIAKQIGLSNLDAHDALSDALWHYVLFE 172 Query: 178 MLRHTAAAHL 187 L + Sbjct: 173 ELLERVEGGI 182 >UniRef50_B1YF69 Exonuclease RNase T and DNA polymerase III n=2 Tax=Exiguobacterium RepID=B1YF69_EXIS2 Length = 190 Score = 96.3 bits (239), Expect = 5e-19, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 46/182 (25%), Gaps = 20/182 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + +D ET + + G + G + + + D + ++G Sbjct: 1 MPPYTLAIDFETANRNSRS--ICAFGWSVLSEGRVVTSEQ-VLINPEEDFDAGNIRVHGI 57 Query: 61 YERGLYREALTEQQTAVAWGE--VQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPL 117 ++ A + + N AFD + + Y + Sbjct: 58 RPSDVWDA----PALPEAMEAHGLFKLIEKAELVIAHNAAFDMGALQKAVQKYDLYQ--- 110 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + L+ +AE L V H A DA A Sbjct: 111 ------MPTFQYGCTVKLSRKLYPWLPNHKLNTMAEFLNVS-FKHHDAKEDAYICALLLQ 163 Query: 178 ML 179 + Sbjct: 164 DM 165 >UniRef50_B1MC17 Putative uncharacterized protein n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MC17_MYCA9 Length = 182 Score = 96.3 bits (239), Expect = 5e-19, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 19/188 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVD--TGESLYFVPHITVEQLAAADPKAMEINGYYE 62 L+ +D ETTGL + P E+ ++ L+ + LAAADP ++I+G+++ Sbjct: 3 LVFLDTETTGLHRER-EPWEIAIIRRTAAGQRQLHLCVDVQDLDLAAADPAGLQISGFHK 61 Query: 63 RGLYREALTEQ-----QTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 R Q + A A V +W G T G P FD+ +AR + + Sbjct: 62 RHPQVRLRPLQFPRVFRAAEAVSLVAEWTAGATIVGVIPQFDTECLARMFLAHG------ 115 Query: 118 TVGRVWHHRLADLAAYAAGKL-NIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATA 173 VG W+ L D+ A A +L + T ++++ GV RH+A+GDA Sbjct: 116 -VGPTWNPELVDVVATTAARLRDRGLTPDADYSNLSQQFGVKTPSAAQRHTALGDARWAM 174 Query: 174 FCFDMLRH 181 +D L Sbjct: 175 RWYDRLSE 182 >UniRef50_C9P6S7 DNA polymerase III epsilon subunit n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P6S7_VIBME Length = 237 Score = 95.9 bits (238), Expect = 6e-19, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 17/180 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ET+GL+ + VG++N+ SL H VE + + +N Sbjct: 53 VVLDFETSGLNPRQDEILSVGMINIHYPVMSLATAQHYYVESEHCIEAETAVVNHIVPET 112 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLTVGR 121 L + + L G + + + +P L R Sbjct: 113 LLGGISRH----ELIECLVESLSGKVVIAHGAEIEKQFLRQLLSLEDSLPLPLIFLDTMR 168 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + K L + E+ G+P H+A D AT F L Sbjct: 169 LER---------SLIKYRGIMYPDLRLAHIREQKGLPPYLAHNAFADVVATGELFLALVE 219 >UniRef50_A2C180 Possible DNA polymerase III, epsilon subunit n=2 Tax=Prochlorococcus marinus RepID=A2C180_PROM1 Length = 292 Score = 95.9 bits (238), Expect = 7e-19, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 23/181 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLN--VDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++++D ETTGLD + +EVG + V + L + + A +IN Sbjct: 68 ILILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSFLLPVE----INNAEKINNI-P 122 Query: 63 RGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + R Q + A + +R N N FD + +P + + Sbjct: 123 AEITR---LPQPLSEAIKYFESLVRVSNVIVAHNAEFD----KKWFGLKKLP----QIEK 171 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 W + D+ A +L P+ +A GVPV N H A+ D A F Sbjct: 172 PWICSMDDITWPADRQLKTRPSVR----DLALAYGVPVWNAHRALTDCIYLAEVFIRCTE 227 Query: 182 T 182 Sbjct: 228 L 228 >UniRef50_B1JN65 Exonuclease RNase T and DNA polymerase III n=4 Tax=Enterobacteriaceae RepID=B1JN65_YERPY Length = 217 Score = 95.5 bits (237), Expect = 8e-19, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 19/188 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYY 61 + +++D ETTGL + A +E+ +++ TG+ L T+ + A P +A I+G Sbjct: 43 RNYLILDTETTGLG-NDAEIIEISIID-CTGKIL----LDTLVKPIKAIPAEATAIHGIT 96 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + T N +FDS ++ + + P Sbjct: 97 NDIVADA----PTWRDIHWQFMVLTNDRTLLIYNASFDSRLIFQTAAANNCPVPEKKYIF 152 Query: 122 VWHHRLADLAAYAAGKLNIDPTELE----GLDAVAERLGVPVVN-RHSAIGDAAATAFCF 176 + +YA D + L AE+ GV + H A+ D T Sbjct: 153 DAECVM---ESYAKYYGQWDQKRNKFKWQRLSNAAEQQGVAIDGTPHRALADCKTTLGII 209 Query: 177 DMLRHTAA 184 + + Sbjct: 210 RAMAGVKS 217 >UniRef50_B9JNT5 Polymerase epsilon subunit protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JNT5_AGRRK Length = 340 Score = 95.5 bits (237), Expect = 8e-19, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 30/180 (16%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV------DTGESLYFVPHITVEQLAAADPKAMEING 59 +++D ETTGL++ +E+GL+ G+ + + + P+ + G Sbjct: 89 VILDTETTGLNHRNDEIIEIGLVAFTFDDFGHIGDVIGVYGGLQ-QPGTPIPPEITRLTG 147 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLT 118 + + + + +V+ + N FD FS + Sbjct: 148 ITDEMVEGQMID-------MQQVRRMVAPADLVIAHNAGFDRPFCEA--------FSNVF 192 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + W ++++ A G E L + + G H AI D A D Sbjct: 193 ATKAWACSVSEIDWNARG------FEGTKLGYLIGQAGYFHEG-HRAIDDCFALLEVLDR 245 >UniRef50_C5BZW8 Exonuclease RNase T and DNA polymerase III n=6 Tax=Actinomycetales RepID=C5BZW8_BEUC1 Length = 283 Score = 95.1 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 54/181 (29%), Gaps = 4/181 (2%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ D ETTG+D V L+ + L ++ A I+G Sbjct: 11 PLVGFDTETTGVDVAHDRIVTAALVVRHGLQGLPQERTWIIDPGVEIPEAASAIHGVTTE 70 Query: 64 GLYREALTE--QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R +A G N ++D TI+ + V + +P +GR Sbjct: 71 HARRLGRPPAEALEEIAAALAAAIADGAAVVAFNASYDLTILEHELVRHHLPTLHERLGR 130 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L L A L +A GV H+A D AT L Sbjct: 131 RPDAVLDPLVLDRALDRFRP--GKRKLVDLAALYGVSTGELHAADVDVTATLDVLRALVG 188 Query: 182 T 182 Sbjct: 189 R 189 >UniRef50_B9L7I4 Exonuclease family n=2 Tax=Nautiliaceae RepID=B9L7I4_NAUPA Length = 271 Score = 95.1 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 15/177 (8%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 V D ETT D + ++ D + + A +A E++ + + Sbjct: 106 VFDTETT--DIYG-YIISYAVVIQDMQSMDTEEIYDFLNPKAKISEEAYEVHKIKQEDIE 162 Query: 67 REALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + A E + G N +D ++ R+ + + + Sbjct: 163 HK----PTFAEKKDEFLQIFDNLDMVVGHNVLYDFGVLKRELERAEHFPNIIDIP----- 213 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D Y+A + ++ ++ L+ G N H A+ D T F+ L Sbjct: 214 -IFDTMYYSADVVVLEKKKMPRLEECVAFFFGKQNANYHDALEDVKMTLKVFNRLLQ 269 >UniRef50_A8QYU9 DNA polymerase III subunit epsilon n=3 Tax=Legionellaceae RepID=A8QYU9_9GAMM Length = 306 Score = 94.7 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 53/180 (29%), Gaps = 27/180 (15%) Query: 7 VVDLETTGLDYDTALPVEVGLLNV----DTGESLYFVPHITVE-QLAAADPKAMEINGYY 61 ++DLET G+D +E+G+L+ + G + + P+ +I G Sbjct: 47 IIDLETMGMDATQDEIIEIGMLSFSFSNEDGILGIKHTYNELNAPGKPIPPEITKITGIR 106 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + E + N FD + L + Sbjct: 107 NEDVIGKTINWNFVLQVLKE------SHLIICHNAGFDRNFLE------------LQTPQ 148 Query: 122 VWHHRLADL---AAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 ++ L E LD + +LG + H AI D AT Sbjct: 149 DIQKQIITLPFGCTIKDIDWKERDYESSKLDYLNWKLG-YFYDGHRAINDCWATLNLLLQ 207 >UniRef50_D2QID7 Exonuclease RNase T and DNA polymerase III n=2 Tax=Flexibacteraceae RepID=D2QID7_9SPHI Length = 205 Score = 94.7 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 27/204 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYY 61 +V+DLE TG + D +++G + D E ++ ++ E A + +I+ Sbjct: 2 PFLVLDLEMTGPEPDYNEIIQIGAVLFDDNWVERGQYLTNVYPENKDAFSSSSEKIHNLS 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWL-------------------RGNTFAGSNPAFDSTI 102 L E+++W+ R G + D Sbjct: 62 LAELEDA----PMIYDVLPEMEEWICTQLGLRVPKGQLDRTPYLRDLIICGQSVINDINF 117 Query: 103 VARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR 162 + ++ Y P + + H LA + L A+A G + Sbjct: 118 L-KEAYRYEKQKWPYSRVLLDLHTLAYFTFRVLKANGRKVPDRLSLTAIASYFGFAREDG 176 Query: 163 -HSAIGDAAATAFCFDMLRHTAAA 185 H+A+ DA TA C + + Sbjct: 177 FHNALEDAVLTAKCLKEVFKLSEQ 200 >UniRef50_Q06GG8 Putative exonuclease n=2 Tax=Rhodococcus RepID=Q06GG8_9NOCA Length = 238 Score = 94.3 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 36/184 (19%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +VD+ET+GLD +E+ +++ TGE L + +P A+E++G L Sbjct: 52 CIVDVETSGLD---GSIIEIAVIDAATGEVLLNT--LVDCSPVEIEPGAVEVHGLTATDL 106 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + E+ + N FD V + + L W Sbjct: 107 AGA----PRWSEVFPELAAATKNRVVLAYNAKFDRGRVLHDCRREGIDPAHLAEPARWQC 162 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR------HSAIGDAAATAFCFDML 179 +A E LG+ + R H A+ D AT ML Sbjct: 163 VMARR---------------------CEALGLGLDGRLRLGGGHRALADVRATRVVLRML 201 Query: 180 RHTA 183 Sbjct: 202 ADGR 205 >UniRef50_A4HVE4 Mitochondrial DNA polymerase I protein B, putative n=3 Tax=Leishmania RepID=A4HVE4_LEIIN Length = 1430 Score = 94.0 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 61/208 (29%), Gaps = 42/208 (20%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ D+ETTGL+ T VEV + D E+ F + ++ + P+ + I+ Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVAM--FDPIENSTFHTLVNPQR--SITPRTVGIHHITNA 819 Query: 64 GLYREALTEQQTAVAWGEVQDWLR-GN---------TFAGSNP-AFDSTIVARQRVTYSM 112 + V + +LR G N + D ++ R + Sbjct: 820 MVRDA----PTVDVVAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECH-- 873 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTE----------------LEGLDAVAERLG 156 ++ D A + L + L Sbjct: 874 ----APECQLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALN 929 Query: 157 V-PVVNRHSAIGDAAATAFCFDMLRHTA 183 V P + H A D A + + A Sbjct: 930 VRPEGDLHRADTDTKALWYVLVNILGVA 957 >UniRef50_C8NL35 DNA polymerase III, epsilon subunit n=20 Tax=Corynebacterium RepID=C8NL35_COREF Length = 252 Score = 94.0 bits (233), Expect = 3e-18, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 50/173 (28%), Gaps = 22/173 (12%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYR 67 DLETT + A V ++ + + + + A ++G Sbjct: 40 FDLETTAANPFEARIVTSAMVTITNAGATPLE--LLADPGVEIPEGATAVHGITTEYARE 97 Query: 68 EALTEQQT-AVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQ---RVTYSMPFSPLTVGRV 122 ++ A +Q+ N N +D T++ R + + P TV R+ Sbjct: 98 HGQPHEEVLAETIRRIQEGWGNNQALIVYNAPYDLTVLRRLSGDFTIDGLVYDPYTVDRI 157 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 L + V + N H A DA A A Sbjct: 158 KDPY---------------RKGKRTLADLCAHYEVQLGNAHEATSDALAAARI 195 >UniRef50_Q4Q4Z6 Exonuclease-like protein (Dna polymerase iii epsilon subunit-like exonuclease) n=2 Tax=Leishmania RepID=Q4Q4Z6_LEIMA Length = 188 Score = 93.6 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 39/180 (21%), Gaps = 39/180 (21%) Query: 31 DTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN- 89 G F ++ A ++G + A + + Sbjct: 11 RGGRV--FHRYVRPSDPRRISAAAAAVHGITWETVQN-CSPWPVVARELVAYMALVGADA 67 Query: 90 ----------------------TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRL 127 N +FD+ + WH R Sbjct: 68 PVSASAQLEAAQLGGQRAVHLPPLVAHNASFDARFLEHHLRRCGYQI-------FWHPRY 120 Query: 128 ADLAAYAAGKLNIDPTELEGLDAVAERLGVP-----VVNRHSAIGDAAATAFCFDMLRHT 182 ++ LDA+ L + N H A+ DA TA F + Sbjct: 121 PLTCTRQWAQVAYPHLAN-NLDALCAFLSIDWAADRAANGHDALTDATLTALLFLQMCRR 179 >UniRef50_A3W6U6 Probable DNA polymerase III (Epsilon chain) protein n=1 Tax=Roseovarius sp. 217 RepID=A3W6U6_9RHOB Length = 193 Score = 93.6 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 55/182 (30%), Gaps = 28/182 (15%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 VD+E G +E+G++ +D + H P I+G + Sbjct: 6 AVDVE--GNGATPPEIIELGIVEMDGLRLTGRIKHWQFRPELEITPIVSRIHGITNEDVA 63 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 ++ WL G G N + +++ V W Sbjct: 64 DA----PPFDDVVDDILLWLEGAPIVGHNVRVELEALSK-------------VLPGWKPA 106 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--------NRHSAIGDAAATAFCFDM 178 A + + E GL+ + + LG+ HSA DAA +A + Sbjct: 107 -AAYDTLKVARRLLPYQEKFGLERLGDALGLKDAASKAVGGGAAHSAPYDAAMSAILLER 165 Query: 179 LR 180 L Sbjct: 166 LL 167 >UniRef50_B1BYN4 Putative uncharacterized protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1BYN4_9FIRM Length = 261 Score = 93.6 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 18/181 (9%) Query: 1 MAKQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + +V+D ETTG++ Y V+V ++N D + + + P A ING Sbjct: 1 MKNKYVVLDFETTGVNRYHNDEVVQVAIVNQDD--EVLINELCKPKHHFSW-PSAQRING 57 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSPLT 118 + + + + + F N AF+ ++ Y + S Sbjct: 58 ISPLMVKDKLC----FESYIDRIIEIFDNSEFIVCYNIAFEQGMLKN----YGIDISKY- 108 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 V+ + D A + + + L A+ G H A+ D AT +CF+ Sbjct: 109 ---VFKDPMKDFAYIYGERGYHGGYKWQSLSTCAKYFG-YNFAAHDALEDVKATRYCFEQ 164 Query: 179 L 179 + Sbjct: 165 I 165 >UniRef50_C0VS85 Putative uncharacterized protein n=3 Tax=Corynebacterium glucuronolyticum RepID=C0VS85_9CORY Length = 2526 Score = 93.2 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 17/180 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V++++T+G+ + +E+G++ + + + A I+G ER Sbjct: 2129 FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTLINPRRSFSDSA--IHGISERM 2185 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + ++ + L D+ V++Q FS V + Sbjct: 2186 T----VAAPVFEEVADDIAELLDRRILIAH----DAPFVSKQLGR---EFSRSNVKAIHL 2234 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + +++ L L A G+ + H A+ DA ATA ++L H A Sbjct: 2235 NDGYCTMSHSPKLLGSSGRSLSSALDAA---GLKNEHSHCALDDAMATANLLNVLLHKGA 2291 >UniRef50_C9LQ99 Exonuclease n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQ99_9FIRM Length = 207 Score = 93.2 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 60/183 (32%), Gaps = 19/183 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYE 62 + +D ET +A +G ++V G + + + DP M +NG Y Sbjct: 2 KYAAIDFETAYWGPGSA--CSLG-ISVSDGNEITEEWYRLIRPYRMNFDPICMRVNGIYP 58 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +E W EV + L G+ N FD ++A Y +P G Sbjct: 59 DDVEKE----PAFPAFWKEVAERLEGSIVFAHNARFDMGVLASVLDVYDLPDIHFLYG-- 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 A ++ LD VA LG N H A+ DA A Sbjct: 113 --------DTVAVSRMLWKELPNHKLDTVAGSLGYD-FNHHQALDDARACEMIVRKAVEK 163 Query: 183 AAA 185 A Sbjct: 164 TEA 166 >UniRef50_A8JCL9 Predicted protein n=2 Tax=Viridiplantae RepID=A8JCL9_CHLRE Length = 398 Score = 93.2 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 59/205 (28%), Gaps = 38/205 (18%) Query: 6 IVVDLETTGL-----------------------DYDTALPVEVGL-LNVDTGESLYFVPH 41 +VVD ETTG + TA V + + G Sbjct: 202 LVVDTETTGFPRRLPGTPMNGFIREQVPYTDLEGWSTARIVSIAWRVLAPDGRMELQEHG 261 Query: 42 ITVEQLAA--ADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRG---NTFAGSNP 96 + + A++I+G + +E L E+ ++ N Sbjct: 262 YRIVRPVGFVIPADAVQIHGISTQRATQEGLP---LDQVLDELMSAIQRWNCGVIVAHNL 318 Query: 97 AFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG 156 +D ++ + V R+ A + L + E L A+ + Sbjct: 319 KYDLNVILSELYR---RNRAQDVARLERMEGVCTANCSKFYLGRYHKQAELLKALTDE-- 373 Query: 157 VPVVNRHSAIGDAAATAFCFDMLRH 181 + H A DA A A C+ L Sbjct: 374 -DMRVAHDAECDAEACAKCYVALLQ 397 >UniRef50_A7K3S7 DNA polymerase III, alpha subunit n=8 Tax=Vibrio RepID=A7K3S7_VIBSE Length = 226 Score = 93.2 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 16/179 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I++D ETTGL D A VE + ++GE + V+ + A I+G + Sbjct: 31 IIIDTETTGLGAD-AEIVEFTAICANSGEVIVDE---LVKPTCSIPADATAIHGITNEDV 86 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + L G N FD+ ++ + + +V ++ Sbjct: 87 KDAPDFHLMFS---NRFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQSVHDLFFK 143 Query: 126 RLADLAAYAAGKLNIDPTELE-------GLDAVAERLGVPVVN--RHSAIGDAAATAFC 175 A L + V V + H A+ D T Sbjct: 144 FCVPQCAMLWYAEFYGVWNEYHEDYKWQSLTNACAQQHVDVSDLIAHRALADCEMTRRL 202 >UniRef50_C6WSG9 Exonuclease RNase T and DNA polymerase III n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WSG9_ACTMD Length = 382 Score = 93.2 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 24/157 (15%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG + VEV ++ +D + + P+ ++ Sbjct: 3 YAVVDVETTGFR-RSDRVVEVAVVQLDRDRRVTGEWCTLLNPGRDLGPQ--HVHRIR--- 56 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A+A G + L G N AFD+ +A + + Sbjct: 57 -AADVWGAPTFALAAGALARRLAGRVLVAHNLAFDARFLAAEFGRVGVDAD--------- 106 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 L L GVP+++ Sbjct: 107 --FDGLCTMRLS------GGRRSLRDCCADAGVPLLD 135 >UniRef50_C7R5J9 DNA polymerase III, epsilon subunit n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R5J9_JONDD Length = 298 Score = 93.2 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 41/157 (26%), Gaps = 16/157 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D+ETTGL +E+ +++ DT ++ + + Sbjct: 4 YAVIDVETTGLSSRNDRVIELAVVHTDTHGTITGHWETLINPQRNLTAQH------IHHI 57 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 A ++ L G N FD+ +A + + H Sbjct: 58 HASHIQHAPLFADIATDLLTLLDGRVPVAHNAPFDARFLAAELHRTG---------KTLH 108 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 + L + + L + Sbjct: 109 QQHDFLCTMNLSRRYLPGVGKP-LADCLAATNITNTG 144 >UniRef50_C7QA32 Exonuclease RNase T and DNA polymerase III n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QA32_CATAD Length = 295 Score = 93.2 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 15/162 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++L D ETTG D + V L+ D E ++ +A I+G Sbjct: 70 RRLAGFDTETTGRDPKSVRIVSAALVTSDGAEKA-----FLIDPGVEIPAEATAIHGITT 124 Query: 63 RGLYREA-LTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPF--SPLT 118 + + LR G N +D T++ + + S Sbjct: 125 EYAREHGTEPRRTLDEIADALAAELRAGTPLVVFNAPYDLTLLEAELARNGLTPLASRAP 184 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV 160 V V + D +++ L+A + GV + Sbjct: 185 VAPVIDPLVID------RQMDKFRKGARTLEAQCQFYGVTIT 220 >UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteriaceae RepID=EXOX_ECOL6 Length = 220 Score = 92.4 bits (229), Expect = 6e-18, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 34/182 (18%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 ++D ET GL VE+ ++V G+ + + H+ V P+AM I+ E + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMVA 59 Query: 67 REALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + G+ + N +FD ++ MP + ++ Sbjct: 60 DK----PWIEDVIPHYY----GSEWYVAHNASFDRRVLPE------MPGEWICTMKLARR 105 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGV---PVVNRHSAIGDAAATAFCFDMLRHT 182 + L +L V P ++ H A+ D TA + +T Sbjct: 106 LWPG--------IKYSNMALYK----TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 Query: 183 AA 184 + Sbjct: 154 SG 155 >UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T43_SULDN Length = 234 Score = 92.4 bits (229), Expect = 7e-18, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 37/195 (18%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 LI +D+ETTGL+ + +G++ V E+ F + V + KA IN Sbjct: 2 LIFLDVETTGLE-NGDKICSIGIICVS--ETAIFSKYELVNEGKKISSKASSINHITNEM 58 Query: 65 LYREALTEQ-QTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + +T E + + +T N FD ++ L G +W Sbjct: 59 IKDKPKFKDSKTWEILHENNN--QSSTIIAHNVNFDLKML-------------LQSGFLW 103 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--------------RHSAIGDA 169 ++ D K I E L + R + + H+A+ DA Sbjct: 104 QGKVVDT--LRVTKHLIPECEEFSLQFL--RYELKLYKDEKKEAAKYSAEISAHNALSDA 159 Query: 170 AATAFCFDMLRHTAA 184 ++ L Sbjct: 160 LHVKLLYEYLLEIKE 174 >UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae RepID=B5K7E4_9RHOB Length = 500 Score = 92.0 bits (228), Expect = 8e-18, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 16/198 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYY 61 + DLETTGL P++ + D E + P+A+ + Sbjct: 2 DFVFYDLETTGLSPAFDQPLQFAAIYTDENFVEKDRVNIRCRLAPHILPSPQALVVTRVT 61 Query: 62 ERGLYR-EALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTV 119 L + + + E+ + + G N FD ++ + ++ + Sbjct: 62 PDQLTDPSLPSLFEFSQQVAELTERWAPAIWVGYNTIKFDEEVLRQTFYR-NLSPNVYAT 120 Query: 120 GRVWHHRLADLAAYAAGKLNIDPT----------ELEGLDAVAERLGVPVVNRHSAIGDA 169 + R L A A + LD +A G N H A+GD Sbjct: 121 QFNGNTRFDILPAVYAAYVREPDLLAWPKDDTGRRSFKLDRLAPANGFKAHNAHDALGDV 180 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L + L Sbjct: 181 EATIHI-ARLIAMRSPAL 197 >UniRef50_B2K016 Exonuclease RNase T and DNA polymerase III n=2 Tax=Yersinia pseudotuberculosis RepID=B2K016_YERPB Length = 233 Score = 92.0 bits (228), Expect = 8e-18, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 16/182 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGLD + A VE+ + +D ++ I +D +A I+G + Sbjct: 60 YLILDTETTGLD-NAAEIVEISI--IDCMGNVLLDTLIKPLGFIPSDVEA--IHGITNKM 114 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + ++ F N FD+ ++ + + + Sbjct: 115 VDNA----PHWCDIHEKFIEIIKSRNFVAYNSRFDTRLIYQSAEFSGVTTGADDIASASG 170 Query: 125 HRLADLAAYAAGKLNIDPTEL----EGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDML 179 + + YA D + + L A A ++ V H A+ D T + Sbjct: 171 N--CAMLEYARFHGQWDSRQSDFKWQTLIAAAGQMNVITEGASHRALSDCKTTLGVIKAM 228 Query: 180 RH 181 Sbjct: 229 AG 230 >UniRef50_C6QF81 Exonuclease RNase T and DNA polymerase III n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QF81_9RHIZ Length = 225 Score = 92.0 bits (228), Expect = 9e-18, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 27/193 (13%) Query: 3 KQLIVVDLETTGL------DYDTALPVEVG-----LLNVDTGESLYFVPHITVEQLAAAD 51 ++++ VD ETTGL D + +G + G + A+ Sbjct: 22 QRILFVDTETTGLRRPSAASEDHDRVISIGFFDTDASALQAGFCRGKFGYFIFNPQQASA 81 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS 111 A ++GY +R L ++ A + + N FD V + Sbjct: 82 AGARRVHGYSDRILAQQDTFA-SCADML--FPAFGSADLIVSHNTDFDRPFVESEFAGAG 138 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAA 170 G+ WH + LDA +RLG+ RH A+ DA Sbjct: 139 RSLR----GKSWHC----TMQAERAR----GGGSASLDASIDRLGIQRQSGRHGALEDAW 186 Query: 171 ATAFCFDMLRHTA 183 + Sbjct: 187 LAMMLYLAQNGIR 199 >UniRef50_Q0BGF9 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Burkholderia ambifaria AMMD RepID=Q0BGF9_BURCM Length = 276 Score = 92.0 bits (228), Expect = 9e-18, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 30/182 (16%) Query: 4 QLIVVDLETTGLDYDTALPVEVGL--LNVDTGESLYFV----PHITVEQLAAADPKAMEI 57 ++ ++D ETTG+ P+ +G+ + ++ G + H E PKA + Sbjct: 21 KVAIIDTETTGV-AAHDEPISIGILLVEIEPGSGVLVQEIGRYHGLREPCVPIHPKAQAV 79 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G L + L E + N FD+ ++A Sbjct: 80 HGMTAADLSGKVLDLAWITSLINE------ADVLIAHNAQFDARMLAVVC--------DA 125 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPT-ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + W + + + LD+V E GV RH A+GD A Sbjct: 126 GSAKSWRC--------SLQQFPWPAAVGRKKLDSVCEFYGVVKQLRHDALGDCQALLAVL 177 Query: 177 DM 178 + Sbjct: 178 LI 179 >UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRC0_9RICK Length = 473 Score = 91.6 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 56/181 (30%), Gaps = 15/181 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGYYE 62 + D ETTG ++VG + V+ F +++ +P A+ +N Sbjct: 3 YVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEARCSLKPGTVPEPGALLVNKTTP 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGR 121 L + L+ E + F G N +FD + + Sbjct: 63 DMLKKTNLSHFGMVQMMKETFEKWSPAMFIGYNSLSFDEEFLRKTFFKS--LTDVYLTNT 120 Query: 122 VWHHRLADLAAYAAGKLNIDPTEL----------EGLDAVAERLGVPVVNRHSAIGDAAA 171 + R L + L LD +A G+ N H A+GD A Sbjct: 121 NGNKRGDILGLVRSAHLYYPECLKTPISEKGNAVFKLDQIASMNGISHDNAHDAMGDVLA 180 Query: 172 T 172 T Sbjct: 181 T 181 >UniRef50_Q5NWQ5 Putative exonuclease n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWQ5_AZOSE Length = 342 Score = 91.6 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 26/177 (14%) Query: 9 DLETTGLDYDTALPVEVGLLNVDTGESLYFVPHIT------VEQLAAADPKAMEINGYYE 62 D+ETTGL D+ +++GL+ + V + + + + G + Sbjct: 47 DVETTGLKKDSDKIIDIGLVLAEFDRVSGQVLRVLERYSGFEDPGRPIPEEITRLTGIRD 106 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + R + N FD + P Sbjct: 107 EDVLEQTFDDARVEALIA------RADLVVAHNAPFDRGFLE-----LRFPSFQKKWWAC 155 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L+ +A ++G H A+ DA T F + Sbjct: 156 SQREAPWSQMMT---------GSTKLEWLAFQIGGCFYEAHRALVDAEVTLFILAQM 203 >UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate division TM7 RepID=A5KSP8_9BACT Length = 476 Score = 91.6 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 53/202 (26%), Gaps = 19/202 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLN--VDTGESLY-FVPHITVEQLAAADPKAMEI 57 MA+ DLET+GLD ++ +D F + + P A+ + Sbjct: 5 MAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPSPDAVMV 64 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWL--RGNTFAGS-NPAFDSTIVARQRVTYSM-P 113 G + + E + E + + + G G N FD + P Sbjct: 65 TGITPQKTHEEGIAEAEF---IKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNFHDP 121 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSA 165 + L D+ L+ + + H A Sbjct: 122 YEWAWKDGRSRWDLLDVVRMTRALRPGGIVWPVDKSDKPTNRLELLTSENNLEHSQAHDA 181 Query: 166 IGDAAATAFCFDMLRHTAAAHL 187 + D A + L Sbjct: 182 LSDVYALIAI-TRMVRDKQPKL 202 >UniRef50_Q4D4N5 Mitochondrial DNA polymerase I protein B, putative n=5 Tax=Trypanosoma RepID=Q4D4N5_TRYCR Length = 1473 Score = 91.6 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 60/202 (29%), Gaps = 30/202 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 +L+V D+E+TGL+ T +E+ + + ++ A P + M I+ + Sbjct: 830 RLVVFDIESTGLNTATDAIIEIAA-----WDPVEATSFSSLVDPERAIPQETMAIHHITD 884 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGN----------TFAGSNP-AFDSTIVARQRVTYS 111 + + +LR + G N A D ++ R Sbjct: 885 ----GMVRGAPRLPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFEREG 940 Query: 112 --MPFSPLTVGRVWHHRLADLA--AYAAGKLNIDPTE----LEGLDAVAERLGVPVVN-R 162 M V L + +++ E L ++ E L V Sbjct: 941 VCMDNILFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEGLHVEADGLL 1000 Query: 163 HSAIGDAAATAFCFDMLRHTAA 184 H A DA F A Sbjct: 1001 HRADTDAKTLWFVLVNALGLAG 1022 >UniRef50_C0VTT8 DNA polymerase III epsilon subunit (Exonuclease) n=3 Tax=Actinomycetales RepID=C0VTT8_9CORY Length = 427 Score = 91.6 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 21/181 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + VD ET +A ++ ++ V+ G+ + + + + +G Sbjct: 252 PKFVAVDFETANRSSRSA--CQIAMVKVEYGQIVDRFSTLLKPPPGHDEFEFTYFHGISA 309 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTI---VARQRVTYSMPFSPLTV 119 R + ++ ++ N +FD + + T ++P Sbjct: 310 RDVADA----PSWKFVEPYIRAFVDRLPVYAHNASFDRGVWVSMDSYYGTRTLPEEFYCS 365 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R + L Y + LD H A DA A A L Sbjct: 366 YRTAKRLIPGLENYKLPTVTKAIAPWFRLD------------HHRADSDAEACALIVIGL 413 Query: 180 R 180 + Sbjct: 414 Q 414 >UniRef50_A0R7K3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7K3_PELPD Length = 304 Score = 91.3 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 30/170 (17%) Query: 8 VDLETTGLDYDTALPVEVGLLNVD----TGESLYFVPHIT--VEQLAAADPKAMEINGYY 61 +D ETTG ++ + +E+G++ + TGE V + + DP+ + G Sbjct: 50 IDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRIVDTYSGFEDPCRPLDPEVTAVTGIT 109 Query: 62 ERGLYREALTEQQTAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQR-VTYSMPFSPLTV 119 + L ++L + + + N FD + + R+ +PF+ Sbjct: 110 DDMLAGQSLDDAAVGKIVSQASLCFC-------HNCKFDRSFLERRFPEFEKLPFACTMS 162 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 W + L L+ + + G ++ H A+ DA Sbjct: 163 QIDWKNELVT---------------SRTLEYLLYKCGACFIDAHRALNDA 197 >UniRef50_D1H2G0 Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) n=10 Tax=Magnoliophyta RepID=D1H2G0_VITVI Length = 447 Score = 91.3 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 49/186 (26%), Gaps = 29/186 (15%) Query: 4 QLIVVDLETT-------GLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAAD---PK 53 ++ D+ETT G +E G + V + + + T+ + Sbjct: 9 EIAFFDVETTVPTRVGQGF-----AILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSL 63 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSM 112 ++ NG ++ V D L G +AG N FD + Sbjct: 64 SVRCNGITR----DAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGR 119 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 P D A + + +A G+ H ++ D Sbjct: 120 PAPEPKGS-------IDSLALLTQRFGR-RAGDMKMATLATYFGLG-QQTHRSLDDVRMN 170 Query: 173 AFCFDM 178 Sbjct: 171 LEVLKY 176 >UniRef50_D0ZEQ2 Orf81 bacteriophage 186 n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEQ2_EDWTE Length = 199 Score = 91.3 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 19/180 (10%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 ++D ETTG+ + A V + +D ++ F I I+G + Sbjct: 32 ILDTETTGVK-ENAEIVSAAI--IDQDGTVLFHSLIKPVNPITEI--TTAIHGITNEMVA 86 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + A E+ L N FD ++A+ + +P + Sbjct: 87 EK----PTWAEVHDEIARILNTAPLVVYNAQFDMRMMAQSAAKHGLPPIVVNTE-----V 137 Query: 127 LADLAAYAAGKLNI-DPTELEGLDAVAERL---GVPVVN-RHSAIGDAAATAFCFDMLRH 181 + AYA + + +++ + V N HSA+GD T + Sbjct: 138 NCAMEAYAHFYGQWNEEHQSYRWQSLSMAMFQQDVDDDNIPHSALGDVNRTLALMRSMVK 197 >UniRef50_A2BVT4 Possible DNA polymerase III, epsilon subunit n=8 Tax=Prochlorococcus marinus RepID=A2BVT4_PROM5 Length = 270 Score = 91.3 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 58/179 (32%), Gaps = 23/179 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLN--VDTGESLYFVPHITVEQLAAADPKAMEINGY 60 ++++++D ETTGLD + +E+G + V + L V + + +A +NG Sbjct: 47 EKILILDTETTGLDENKDEIIEIGCILFHVTSKSVLSQVSFLFPV----SSNEAEHVNGI 102 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + Q + + N FD + +P Sbjct: 103 SAEVSNIK----QPWEEGLNFFLKLVDCADLIVAHNVEFD----KKWFGKGRLPN----- 149 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + L + + +A +PV + H A+ D + F Sbjct: 150 --LEKNWICSLEDINWS-FQKNLKNRPSVTDLALSFSIPVWSLHRALSDCFYISEVFKK 205 >UniRef50_C6JNE1 Exonuclease RNase T and DNA polymerase III n=2 Tax=Fusobacterium RepID=C6JNE1_FUSVA Length = 188 Score = 91.3 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 63/188 (33%), Gaps = 18/188 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEV-GLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++ +D ET G+ + + +++ G++ + + F ++ + +A++I G Sbjct: 2 KILFIDTETGGIT-EKSALIQLSGIVQIGKEVAEEFNFYVKPFPGSEVTDEALKIQGRTR 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWL---------RGNTFAG-SNPAFDSTIVARQRVTYSM 112 + + V + + L G N FD ++ + Sbjct: 61 EEIEK----YDSEEVVFRKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINKFLRRNGE 116 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + + L +AA K I + L+ G+ + H ++ D AT Sbjct: 117 KYLFSYIQATTLDPLQWIAALQLLKK-IPVLKDNKLETWCNHFGIEL-KAHDSLEDIKAT 174 Query: 173 AFCFDMLR 180 + Sbjct: 175 KALTKKMM 182 >UniRef50_B8HHY2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HHY2_ARTCA Length = 197 Score = 91.3 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 59/183 (32%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYY 61 + +D E + + ++GL+ V G H + + + ++G Sbjct: 6 DFVAIDFEL--ANAKHSSICQIGLVKVRDGVLGKTHTHFVMPPAGQQNFGHRQIAVHGIT 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + + ++ + N + +++ + + P T Sbjct: 64 RRMIDGADGW----DLMLPRLEAFTGDLPLVAHNVVAERSMIRQTTEAIGLTPPPFTF-- 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 A +L++ E L+ + E LG+P + H A DAAA A L Sbjct: 118 --------YCTQRAAQLHLPGQESYRLNMLVESLGLPPLQHHDAGEDAAAAAHLAVRLSE 169 Query: 182 TAA 184 + Sbjct: 170 LSG 172 >UniRef50_C0VV73 DNA polymerase III epsilon subunit n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VV73_9CORY Length = 449 Score = 91.3 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 18/162 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA--AADPKAMEINGYY 61 + +D+ET + D +E+G+ V G + + I+G Sbjct: 104 DFVAIDVET--ANDDWGSIIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIR 161 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E A + V+++ N FD T +AR +P G Sbjct: 162 PEDIEGE----PSFAQRYELVKEFTGELPMVSHNAQFDFTALARACHASHCAAAPNEFG- 216 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 + A + L V LG+ + + H Sbjct: 217 ---------CSLALSRSRDLGFATNRLPDVCRGLGIALEHHH 249 >UniRef50_C8NWG5 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NWG5_9CORY Length = 238 Score = 90.9 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 19/182 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG+ D VE+G++ +D S+ V +++G E Sbjct: 20 YAVIDFETTGMR-DNDAIVEIGVVLLDKDLSVEDTWEALVNPHRLILN--TDVHGI-EED 75 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 LT A + + G T + ++ + + + M + Sbjct: 76 DVDRGLTFPALAGYFKHLLH---GRTLVAHDATYEKRYLRYEFERWGMDDTVPDTWIDTM 132 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + K +D +L L + A+ DA+ATA L Sbjct: 133 QLSSRYLGVKKLKEALDVAKLPALKTL------------DALSDASATANLLRHLHEEHD 180 Query: 185 AH 186 A Sbjct: 181 AS 182 >UniRef50_Q0S6F1 DNA polymerase n=4 Tax=Rhodococcus RepID=Q0S6F1_RHOSR Length = 231 Score = 90.9 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 12/161 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + DLETTG D A V + V ++ A +++G Sbjct: 7 RPICAFDLETTGPDPTDARIVS-ACIAVVDAHHFE-SRTWLLDPEVPIPQGASDVHGIST 64 Query: 63 RGLYREALTEQQTAVAWGEVQ--DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E W R + N ++D T++ + + + L G Sbjct: 65 EYARAHGQDYATGYGEIREALHDAWTRDHAVVAFNASYDLTVMHTEGLRLGLA--ELVTG 122 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 V + D ++ L AV E G+ + + Sbjct: 123 IVVDPYVIDRE------MDRHRKGRRTLGAVCEHYGIALED 157 >UniRef50_A1U7Q5 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U7Q5_MARAV Length = 291 Score = 90.9 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 27/177 (15%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLN--VDT--GESLYFVPHITV--EQLAAADPKAME 56 + ++ +D ETTG +E+GL VD GE + V ++ + + Sbjct: 45 QAVVWLDCETTGFQAGHDKIIELGLTKGYVDPITGELISLVASVSFYEDPGFPLPEIITQ 104 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 I G + + + Q + N +FD + Sbjct: 105 ITGITDEMVSGRTIDGVQVREW------FTDDPIVVAHNASFDRPFFESRFPMLD----- 153 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 +L + E L+ + RLG H A DA ATA Sbjct: 154 ---------QLRWACSMKDIPWQEYGFESTKLEYLLYRLG-YFYEGHRASIDAIATA 200 >UniRef50_UPI0001BC2AF6 5''''-3'''' exonuclease (including N-terminal domain of PolI) n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2AF6 Length = 578 Score = 90.5 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 12/157 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L+ DLETTG+D TA V + ES + A ++G Sbjct: 360 RLVGFDLETTGVDPATARIVTAAFV-----ESAENARTWLADPGVEIPEPARAVHGITTE 414 Query: 64 GLYREALTEQQTAVAWGEVQDWLR--GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + V L+ G G N +D ++++ + + + Sbjct: 415 FAQANGAPVAEVVAELCTVLADLKAEGAVVVGHNIVYDLSVMSAEVKRHQPHIGLAALL- 473 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP 158 + D K+ L A+R V Sbjct: 474 ---PTIVDTFVLDK-KVEQFRRGKRTLTETAKRWKVS 506 >UniRef50_O64348 Gp41 n=3 Tax=root RepID=O64348_BPN15 Length = 304 Score = 90.5 bits (224), Expect = 3e-17, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 52/185 (28%), Gaps = 20/185 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D ETTGL + + + V+ P+ EIN Sbjct: 20 DYVVIDTETTGLGEYAEI-----IEIAIINMRGEVLLDTLVKPTKPIPPEVTEINHITNE 74 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS-------- 115 + + + +V + + + N FD+ ++ + + Sbjct: 75 MVA----SAPAWCDVFPKVLAIISKHKWLAWNSGFDARMLEQTCLNTIFLNKNAYYVTAM 130 Query: 116 --PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + + + D Y + + L A R GV + H A+ D Sbjct: 131 VSRIHTSHIDAKAVYDT-WYGEYDAKHQAFKRQSLTIAAARHGVLLEGAHRALADCKMVL 189 Query: 174 FCFDM 178 Sbjct: 190 AVLQK 194 >UniRef50_Q2S065 DNA helicase II n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S065_SALRD Length = 1084 Score = 90.5 bits (224), Expect = 3e-17, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 51/184 (27%), Gaps = 18/184 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEIN--G 59 + ++VDLE T D E+G L V G + F + + + AD + G Sbjct: 687 PEYVMVDLEATSTDPRHCRVAEIGALKVRDGTVVDRFSELVQLPEDLTADERETLRTVCG 746 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLT 118 + EA E A W + ++ G N +D ++ R Sbjct: 747 LDPASDFDEARPE---AAVWADFCAFVDGAPLVAHNGQRYDFRVLRR----------LAN 793 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVVNRHSAIGDAAATAFCFD 177 H A + E L H A+ D Sbjct: 794 THEADAHWATTYDLLPAAHELFPDLRRYDAAHLRETLLDDDADTAHRALADCEDQQRILA 853 Query: 178 MLRH 181 ++ Sbjct: 854 RMQE 857 >UniRef50_B8H5Y8 DNA polymerase III epsilon-like protein n=2 Tax=Caulobacter vibrioides RepID=B8H5Y8_CAUCN Length = 209 Score = 90.5 bits (224), Expect = 3e-17, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 44/155 (28%), Gaps = 16/155 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++I +D ET A P +GL ++ GE H M +G Sbjct: 9 KVIAIDFET--ASEQRASPCSIGLAWIEDGEVARVEHHYIRPPGNRFAAFNMAFHGIRPE 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ L G N +FD +++ R Y +P Sbjct: 67 HVADADEWP----DVLERIRPELEGALVLAHNASFDISVIRRTCEHYDVPAPG------- 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP 158 L + L+ V LGV Sbjct: 116 ---FDYLCTVQVARSVWPELPSHKLNVVCGHLGVD 147 >UniRef50_Q0IXT1 Os10g0407500 protein n=5 Tax=Magnoliophyta RepID=Q0IXT1_ORYSJ Length = 517 Score = 90.1 bits (223), Expect = 3e-17, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 49/184 (26%), Gaps = 19/184 (10%) Query: 3 KQLIVVDLETTGLDYDTA----LPVEVGLLNVDTGESLYFVPHITVEQLAAA---DPKAM 55 ++ D+ET+ A +E G + V + + T+ + ++ Sbjct: 28 PEIAFFDVETS--VPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASV 85 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPF 114 NG + + + ++ G +AG N FD + P Sbjct: 86 RCNGITRDAVAAAPAFRDVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPP 145 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + D K + ++A G+ H ++ D Sbjct: 146 PEP-------KGMIDTLPLLTQKFGR-RAGDMKMASLANYFGLGR-QSHRSLDDVRMNLE 196 Query: 175 CFDM 178 Sbjct: 197 VLKY 200 >UniRef50_C4NV58 Exonuclease family protein n=11 Tax=Bacteria RepID=C4NV58_ECOLX Length = 289 Score = 90.1 bits (223), Expect = 3e-17, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 21/159 (13%) Query: 1 MAKQLI-----VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM 55 MA++ + V+D ETTGL + +E+ + ++ L + DP+AM Sbjct: 97 MAQRWVALEPLVLDTETTGLG-ERDQVIELAVTDIRGAVLL----CTRLRPTVEIDPQAM 151 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 ++G E L E + L G NP+FDS ++ + + S Sbjct: 152 GVHGITETELSNE----PTWTQVAPALARLLSGRHLVIFNPSFDSRMLRQTASAFGDQLS 207 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER 154 W L A T G ++A+ Sbjct: 208 -------WWQEQNCLCAMKLAADAFGSTNRHGTISLADA 239 >UniRef50_Q0F2C4 DNA polymerase III subunit epsilon n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2C4_9PROT Length = 310 Score = 90.1 bits (223), Expect = 3e-17, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 27/179 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV--DTGESLYFVPHITV----EQLAAADPKAMEING 59 +V+D ETTGLD +E+G + D G + + A ++ G Sbjct: 40 LVIDTETTGLDTTADTIIELGFVAFSYDAGSGRIYEVLHNYDGFEDPGAPLSDVVKQLTG 99 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + L + + + + N AFD ++ R+ PL Sbjct: 100 ISDAMVAGQRLDDAEIETWLK------KADLLIAHNAAFDRPMLERRL--------PLAA 145 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + W D+ A G LD +A RLG + H A+ DA AT Sbjct: 146 EKNWACTFCDINWDAEG------IASRKLDYIACRLG-YFFDGHRAVVDAQATLHLLTR 197 >UniRef50_D1B7G9 Exonuclease RNase T and DNA polymerase III n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B7G9_THEAS Length = 280 Score = 89.7 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 20/174 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYY 61 +D ET + P VG++ V E + + + +P + ++G Sbjct: 2 DFAAIDFET--ANRFHESPCAVGVVVVRQWEIVEEASFLILPHRDFRFFEPMNVRVHGIT 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + L+ + A +V ++G N FD ++ R YS+ + Sbjct: 60 PRRV----LSSPEFPDALEDVISMVQGLPLMAHNARFDLEVLMRTMALYSLGEARFDWVC 115 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 G L+++AE LG P N H + DA A Sbjct: 116 SLRLARRAFRLRRCG-----------LESMAEHLGFP-FNHHDPLDDARLCAKV 157 >UniRef50_Q8QNF3 EsV-1-126 n=1 Tax=Ectocarpus siliculosus virus 1 RepID=Q8QNF3_ESV1 Length = 206 Score = 89.7 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 60/198 (30%), Gaps = 23/198 (11%) Query: 6 IVVDLETTGLDYDTA-----------LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA 54 + D+ETTGL A V + + + +++Y + + A + Sbjct: 4 LFFDVETTGLPPRKANPETFEQYDSCRVVSIAWV-LRDEKTVYSQRYSVTDPGIADENIG 62 Query: 55 ME-INGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSM 112 E ++G + R V + + + N FD ++V+ + Sbjct: 63 AEFVHGISREVMDRYGNAT---KVVLSDFMADVDRSDKIVAHNLDFDRSVVSAELFRMGS 119 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELE---GLDAVAER-LGVPVVNRHSAIGD 168 + + L + + + L+ + E G N H A+ D Sbjct: 120 SDDARRL--MSFKSLCTMKSTTNLVRIPNSYGSYKWPKLEELHEFLFGHVFENAHHAMCD 177 Query: 169 AAATAFCFDMLRHTAAAH 186 A C+ L + Sbjct: 178 VDAMVKCYFTLLEKHTSS 195 >UniRef50_UPI000174666F hypothetical protein VspiD_20115 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174666F Length = 202 Score = 89.7 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 68/187 (36%), Gaps = 12/187 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +L+V DLETTGLD VE+G + + FV A + +AME+NG Sbjct: 4 EPRLLVTDLETTGLDGRACGIVEIGAVWMLGAG--EFVMKCRPHADAVIEARAMEVNGCD 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFA--GSNPAFDSTIVARQRVTYSMPFSPLTV 119 + T A + +W+ G NP D + + + Sbjct: 62 ----WHLDPTVAAEVEALEQFVEWVGAGPVILCGQNPRHDLWFLQEGAKRHGLELP-FVH 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDM 178 + H LA A A G+ P + D + E LG+ H A+ A A F M Sbjct: 117 RTLDLHTLAVAYALACGRRV--PAKGYYTDEIYELLGMEPEPKPHRALVGAQKEAEAFRM 174 Query: 179 LRHTAAA 185 L A Sbjct: 175 LLGLPEA 181 >UniRef50_C5WTF0 Putative uncharacterized protein Sb01g029940 n=3 Tax=Andropogoneae RepID=C5WTF0_SORBI Length = 435 Score = 89.7 bits (222), Expect = 5e-17, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 21/180 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA----ADPKAMEIN 58 ++++ +D+ET+ + +E G + V + + + T+ + A + Sbjct: 18 EEIVFLDVETS--TPPR-VLLEFGAVVVCSRRLVDVSSYATLVRPADPDAAVPDPTARCS 74 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPL 117 G +V D L G +AG N FDS I+ P Sbjct: 75 GITR----DAVADAPPFRDVADKVYDVLHGRVWAGHNIVKFDSVIIRDAFAEIGRPPPEP 130 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + D + L ++A G+ RH ++ D Sbjct: 131 -------KGMVDTLPL-LTQWFGPRAGDMKLASLANYFGLG-KQRHRSLDDVKMNIDVLK 181 >UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacteria RepID=B6J811_COXB1 Length = 458 Score = 89.7 bits (222), Expect = 5e-17, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 16/193 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGY 60 K + DLETTGL+ ++ + D E I + P+AM I+ + Sbjct: 6 KTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPDVIPSPEAMIIHRF 65 Query: 61 Y-ERGLYREALTEQQTAVAWGEVQDWLR--GNTFAGSN-PAFDSTIVARQRVTYSMP--- 113 ++ L +A A E+ + G G N FD + +P Sbjct: 66 SIDQMLSGKAEI-----EAIREIHQSVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPYT 120 Query: 114 --FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 + + + LN L+ +++ + H+A+ D A Sbjct: 121 HQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFDLKLENLSKANQLAEGQAHNAMVDVEA 180 Query: 172 TAFCFDMLRHTAA 184 + +L + A Sbjct: 181 SVALAKLLMNQEA 193 >UniRef50_C6BPA9 Exonuclease RNase T and DNA polymerase III n=2 Tax=Burkholderiales RepID=C6BPA9_RALP1 Length = 330 Score = 89.3 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 54/179 (30%), Gaps = 19/179 (10%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D ETTGL +E+ + +D + F I L P A I+G Sbjct: 161 VYLDTETTGLSAASGDELLELAV--IDDAGKVLFETLIRPNHLTEW-PAAQVIHGITPAD 217 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTV--GR 121 + + + + G N FD + + + + Sbjct: 218 VAGA----PSLSAVLQGLAAAIEGAEALVIFNADFDLGFLPEPLRPLAKQKARCAMQAFA 273 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +W D + + L+ A+A V H A DA A + LR Sbjct: 274 LWCGEWDD------YRYSYRWQNLQQAAAIAGH--VWEGRAHRARADAFAVRTVWHWLR 324 >UniRef50_B8GE83 Exonuclease RNase T and DNA polymerase III n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GE83_METPE Length = 193 Score = 89.3 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 23/175 (13%) Query: 5 LIVVDLETTGLDYDTA----------LPVEVGLLNVD-TGESLYFVPHITVEQLAAADPK 53 + D ETTGL VE+G + D G + + + + Sbjct: 2 YLFFDTETTGLPKKKHASMHRVANWPRIVELGWVLTDTKGTVIEEAGLLVRPDGFSVPAE 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSM 112 + I+G + + L + G +FD +V + + M Sbjct: 62 STAIHGITTEQATEQGSA---ISEVLARFLLALEQSELICGHQVSFDHRVVGAELIRAGM 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV---PVVNRHS 164 P V ++ R + A + L A L + P H Sbjct: 119 P-----VDQLDKPRFCTMEASKTLNRSATGHSPHPLSLSALYLHLFDEPFAGAHR 168 >UniRef50_B9J6H2 Bacteriophage 186 Orf81-like protein n=1 Tax=Bacillus cereus Q1 RepID=B9J6H2_BACCQ Length = 288 Score = 89.3 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 24/183 (13%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D ETTGL VE+ +++ L +T AD + +I+G + Sbjct: 127 YIILDTETTGLGL-GHEIVEIAAIDLYGNTLL--NTFVTPTIPIPAD--STKIHGITDDM 181 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + ++ +G T N AFD ++ +++ L + Sbjct: 182 VKDA----PSWEETYMKLLTISQGKTILIYNAAFDIPKISYTCEVHNIAPKKLKSECI-- 235 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + YA + ++E G + H AI D + + + + Sbjct: 236 -----MELYAEYIDSQYWVP------LSEAAG--TITSHRAINDCKSVLIVLENIWNEIQ 282 Query: 185 AHL 187 L Sbjct: 283 HTL 285 >UniRef50_Q6ML77 DNA polymerase III polC-type n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6ML77_BDEBA Length = 295 Score = 89.3 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 27/177 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV----DTGES--LYFVPHITVEQLAAADPKAMEING 59 ++D+ETTGL+ +E+G+ ++GE + + P+ + G Sbjct: 47 AILDVETTGLNQTEDTIIEIGIRQFLFNKNSGEVLAVTKSYSSFQDPGKPISPEIQALTG 106 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + A + + + N FD + R S + Sbjct: 107 ITDEMVAGKQIDW----TAVDALLNECQ--LIIAHNAKFDRPFIDR--------RSKTSP 152 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 RVW ++ + + L+ + G + H AI D A + Sbjct: 153 ERVW------ACSFKQVEWSDKGFTSPKLELLNIYHGF-FTDSHRAINDVDALLYLL 202 >UniRef50_A9CEN2 Polymerase epsilon subunit n=5 Tax=cellular organisms RepID=A9CEN2_AGRT5 Length = 326 Score = 89.3 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 28/179 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV---DTGESLYFVPHI--TVEQLAAADPKAMEINGY 60 +++D ETTGLD+ T +E+G++ D G + A + G Sbjct: 74 VILDTETTGLDHRTDEIIEIGVITFTFDDQGAIGDVTGIYGGLRQPGVAIPEDITRLTGI 133 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + +++ + + N FD FSP+ Sbjct: 134 TDEMVAGQSID-------MMRLTSLIAHADLIIAHNAGFDRPFCEA--------FSPIFR 178 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + W + + + E L + + G H A+ D A + Sbjct: 179 DKAW------ACSVSEIDWRVRGFEGNKLGYLIGQSGYFHDG-HRAVDDCFALLEVLEQ 230 >UniRef50_C5CA98 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CA98_MICLC Length = 381 Score = 89.3 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 46/164 (28%), Gaps = 21/164 (12%) Query: 4 QLIVVDLET-TGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGY 60 +D ET G P VG + V G + + DP+ + I+G Sbjct: 12 DFTAIDFETANGF---RGSPCAVGAVRVRDGVMVDRAEWLIRPPVGFDRFDPRNVRIHGI 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + L + A + E+ D++ + A N FD ++ L Sbjct: 69 TEDRV----LDAPRFAQVYDELADFVGTDVLAAHNAGFDVGVIESGLEVSGRDVPGLEFV 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + D L + A G H Sbjct: 125 ----------CTLVLARRVYD-LPSYALPSAAREAGFTPGRHHD 157 >UniRef50_B2UMX8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMX8_AKKM8 Length = 197 Score = 89.3 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 32/188 (17%) Query: 5 LIVVDLETTGLDY-DTALPVEVG--LLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +D E+ G +T PV++G E + +I VE+ A +++G Sbjct: 13 FAAIDFESAGAARGETDQPVQIGIAACPRLEDEPELWTSYIAVEKPVLWS--ASQVHGIT 70 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L W E++ L G NPA + + R + Sbjct: 71 TEMLADA----PSFPSLWPEIRSRLGQAVVVGHNPATERKFLRR-FPGHGFG-------- 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--------VPVVNRHSAIGDAAATA 173 L A G++ + L ++ LG +P H A+ DA A+ Sbjct: 118 ------PWLDTLALGRMCVPGLADYSLSSLCGALGLTCSVEALLPARRWHDALYDALASL 171 Query: 174 FCFDMLRH 181 L Sbjct: 172 LIVRFLVK 179 >UniRef50_Q4SE72 Chromosome undetermined SCAF14625, whole genome shotgun sequence n=2 Tax=Clupeocephala RepID=Q4SE72_TETNG Length = 228 Score = 89.3 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 21/192 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + L+ DLETTGL +++ + S ++ V P A ++ G+ Sbjct: 11 QALVFFDLETTGLGSTCD-IIQLAAV------SGGHSLNLYVVPRRPLQPGAAKVTGFRV 63 Query: 63 RG----LYREALTEQQTAVAWGEVQDWLR--GNTF-AGSNP-AFDSTIVARQRVTYSMPF 114 R L+R+ + +LR + G N FD ++ R + Sbjct: 64 RRRRLYLHRQLVPTNSLREVLVSFIAFLRMLHHPLIVGHNIRRFDGPLLGRVLDELDLRT 123 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGDAAATA 173 + W D + A L + + + LG+ H A+ D A Sbjct: 124 QFESSVTGW----VDTLSLAQELLRGHNLQNFRQETLVRELLGLD-YRAHDALQDVRALQ 178 Query: 174 FCFDMLRHTAAA 185 F L+ TAA Sbjct: 179 ALFGALQPTAAT 190 >UniRef50_C8NWH7 DNA polymerase III subunit epsilon n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NWH7_9CORY Length = 959 Score = 88.9 bits (220), Expect = 7e-17, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 22/161 (13%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGYYE 62 V+D+ TTG + VEVG++ +D E + + + D ++ Sbjct: 7 FAVIDVVTTGFG-GSDRIVEVGVVLLDQQLREQGTWETLVQPNR----DIATCHVHKLTA 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L E+ +RG N +F+ ++++ + + Sbjct: 62 THLKNA----PTWEEVAPELAQVIRGRIGVAHNASFEKRFLSKEFCRVGIATNVGEA--- 114 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 D A +L L E G+ H Sbjct: 115 ---HWVDTKDLATAQLGCG-----SLADALEAAGLTNSEPH 147 >UniRef50_A4FXS5 Exonuclease, RNase T and DNA polymerase III n=5 Tax=Methanococcus RepID=A4FXS5_METM5 Length = 191 Score = 88.9 bits (220), Expect = 7e-17, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 63/186 (33%), Gaps = 18/186 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY--FVPHITVEQLAAADPKAMEINGYYE 62 + +D ETTGL ++ L D +L F + V+ ++ + A +++G Sbjct: 2 YVFLDTETTGLHPGQ--IAQLSYLVTDEDLNLKKVFNQYYLVDHMSRS---AAKVHGLTM 56 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPLTV 119 + E EV+D L + G N +FD + + +P Sbjct: 57 -DILDELSNGMTFEDTVDEVRDDLEDSVIIGHNISFDIRFLKAEFERLGPEYIPKDKFCT 115 Query: 120 GRVWHH--RLADLAAYAAGKL-----NIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + +L Y KL ++ EGL+ + G V H A D Sbjct: 116 MFHFTPICKLPGQKRYKRPKLVELMEFLEQCPHEGLEFTKKTYGCSDVGFHDARYDTGIL 175 Query: 173 AFCFDM 178 C+ Sbjct: 176 YLCYKK 181 >UniRef50_B9FK06 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9FK06_ORYSJ Length = 252 Score = 88.9 bits (220), Expect = 7e-17, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 46/179 (25%), Gaps = 16/179 (8%) Query: 3 KQLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++ D+ETT D +E G + V + + TV + + Sbjct: 4 PEMVFFDVETTAASADEGQRSVLEFGAIVVCPRRLVEVDSYHTVIRPGDMSAVSKRF--- 60 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTV 119 + + + + L G +AG N FD + Sbjct: 61 -AAMVDVDVASAPSFDQVAERIFGVLDGRVWAGHNIQRFDCHRIREAFAAIGRAAPEPV- 118 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + D A + +A G+ H ++ DA Sbjct: 119 ------AIVDSLNVLAHDFGR-RAGDLKMATLASYFGIG-KQSHRSLDDARMNLEVLKR 169 >UniRef50_A4TY99 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases n=2 Tax=Proteobacteria RepID=A4TY99_9PROT Length = 173 Score = 88.9 bits (220), Expect = 8e-17, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 50/176 (28%), Gaps = 21/176 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D ET D + L V G + + A I+G Sbjct: 2 DFIALDFET--ADNGRDSACSLALAVVKNGTV--AETWHRLIRPPRASQMFTHIHGIT-- 55 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + W E++D + A N FD ++A + Sbjct: 56 --WDMVKDQPDFGHFWPEIRDLIDAAPFLAAHNAPFDKGVLAECCRAHGHGAPLTP---- 109 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 A N+ PT L V L P+ N H A+ DA A A Sbjct: 110 ----FVCTVRVARDTWNLRPT---KLPDVCRFLAQPL-NHHDALSDAVACAEIMLA 157 >UniRef50_A0B4X4 Exonuclease, RNase T and DNA polymerase III n=2 Tax=Burkholderia RepID=A0B4X4_BURCH Length = 293 Score = 88.6 bits (219), Expect = 9e-17, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 26/173 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTGLD A VE+ + +D ++ + A A EI+G + + Sbjct: 130 LFIDTETTGLD-HQAAIVEIAI--LDRAGAVLIDTLVKPAMPIPA--AATEIHGITDADV 184 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL---TVGRV 122 +V + L G N AFD ++ + ++ + L + Sbjct: 185 AGA----PAWNTIGPQVAELLAGRLLIAHNGAFDERLLYQTSRSHGVTLPALRVECTMEL 240 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + A L + RH A DA Sbjct: 241 LNGWAGRWLSLADAALMLGAG--------------TFAARHRACADAEQCRQI 279 >UniRef50_B6U6C6 Exonuclease n=1 Tax=Zea mays RepID=B6U6C6_MAIZE Length = 302 Score = 88.6 bits (219), Expect = 9e-17, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 49/182 (26%), Gaps = 16/182 (8%) Query: 1 MAKQLIVVDLETTGLDYDT-AL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M +++ D+ETT +E G + V + + + T+ + + Sbjct: 3 MRDEIVFFDVETTAPSAAGPGRWWLLEFGAILVCPRKLVEVGSYDTLIRPGDLSAVSRR- 61 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSP 116 + + + ++ D L G +AG N FD + P Sbjct: 62 --FTDDVEAAIMASAPPFKDVADKIFDILDGRVWAGHNIQRFDCPRIREAFADIGRPAPE 119 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + L + +A G+ +H + DA Sbjct: 120 PVGVIDSLNVL--------AAHFGRRAGDLKMATLATYFGIG-KQKHRGLDDARMNLEVL 170 Query: 177 DM 178 Sbjct: 171 KH 172 >UniRef50_B9KY42 Putative DNA polymerase III, epsilon chain (EC ) n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY42_THERP Length = 190 Score = 88.6 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 14/158 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++++D ETTG+ +E+ +L+ L V+ DP A+ ++G E Sbjct: 20 VVILDTETTGIR-SQDQVIELAVLDTHGNVLLE----TLVKPSCPIDPAALRVHGLSEAH 74 Query: 65 LYREALTEQQTAVAWGEVQ-DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + V + E++ + R N FD ++ + Y + L+ W Sbjct: 75 LAHA----PEWPVVYRELRVIFDRARLIVTYNAPFDRRLIEQTCRCYGLSLPDLS----W 126 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 + A YA L +RLG+P Sbjct: 127 DCAMRRFAEYAGPPPTESWRNYHRLSEALQRLGIPHPG 164 >UniRef50_Q211V1 Exonuclease n=2 Tax=Rhizobiales RepID=Q211V1_RHOPB Length = 314 Score = 88.6 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 17/168 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++ +D ET + + P +GL ++ G+ + + + +++G Sbjct: 3 ILAIDFET--ANEKRSSPCALGLAWIERGQIVRREYRLIKPKEMRFGVFEAKVHGLSPSE 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + Q+ E ++ N FD ++ Y + + Sbjct: 61 VKDA----QEFPEVISEFLSDIQSGLLLAHNAQFDVDVLCATLALYGIAIPRFSF----- 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 L + + L A+ E+LG+ H A DA A Sbjct: 112 -----LCSQRVASRVWSDEKSLKLSALGEKLGIS-FRHHQADEDAFAC 153 >UniRef50_Q6XNA5 Putative uncharacterized protein n=1 Tax=Rhodococcus erythropolis RepID=Q6XNA5_RHOER Length = 206 Score = 88.6 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 8/158 (5%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++L+VV + TG D + +EV +++ +G+S F +T EQL ADP + NGYY Sbjct: 3 TRELVVVQVNATGNDPARHVALEVAAVSLVSGKSWDFTVPLTQEQLVDADPSTLRRNGYY 62 Query: 62 ERGLYR-EALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 RGL L+ + ++ L GNT G+ P + +AR + Sbjct: 63 RRGLADRADLSRPLLSGRIADLAGALAGNTLGGTAPEESADFLARLFR-------SFDIE 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP 158 WH RLAD+ A AG + T + A G+ Sbjct: 116 PRWHPRLADIGALTAGAFGLAATSIPTFTACCRMWGID 153 >UniRef50_A1ZEC3 DNA polymerase III alpha subunit n=2 Tax=Bacteroidetes RepID=A1ZEC3_9SPHI Length = 1403 Score = 87.8 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 54/195 (27%), Gaps = 16/195 (8%) Query: 5 LIVVDLETTGL-----DYDTA-----LPVEVGLLNVD-TGESLYFVPHITVEQLAAADPK 53 ++ D ETTGL T V++ D G+ + I + Sbjct: 2 YLIFDTETTGLPKDFNAPHTDVDNWPRLVQIAWQLHDYNGKLVSAENMIVKPEGFTIPFN 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQ-DWLRGNTFAGSNPAFDSTIVARQRVTYSM 112 A +++G E L + D R G N FD I+ + V ++ Sbjct: 62 AEKVHGISTEIALEEGLP---LNEVLEKFAVDIARSELIIGHNIGFDVNIMGAEYVRTTV 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPVVNRHSAIGDAAA 171 V + L + + + H A D A Sbjct: 119 DSKLHEVPTYDTKSEETAEYVGIQGGRGGKFKWPTLTELHTKLFSESFDDAHDAAYDVLA 178 Query: 172 TAFCFDMLRHTAAAH 186 TA C+ L A Sbjct: 179 TARCYFGLISIGIAP 193 >UniRef50_C0QMS3 Predicted type III DNA polymerase PolC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QMS3_DESAH Length = 290 Score = 87.4 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D+ET + D A ++G+ + G+ L V DP + ++G E Sbjct: 2 EFVSIDVET--ANPDMASICQIGIACFNNGQ-LEREWSSLVNPRDYFDPINVSVHGINET 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + E++ L G FD + + +S+ + Sbjct: 59 SVS----SAPSFEEIYHEIRSLLSGKICVSH-THFDRISMDKAIRKHSLDPIDV------ 107 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D A A + GL V + +G H A+ DA A A Sbjct: 108 --VWLDSARIARRAWEECAWKGYGLANVCKIIGFE-FKHHDALEDAKACGAIVHAAVEKA 164 Query: 184 AAHL 187 L Sbjct: 165 GLTL 168 >UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF4745 Length = 1746 Score = 87.4 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 55/181 (30%), Gaps = 27/181 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A ++ V+D+ETTGLD E+ L+ +D + + + A ++ Sbjct: 101 ADRIAVLDIETTGLDSAADFVCELALVGLDG--TPLANIMVQLPAGVARPNESF------ 152 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNP-AFDSTIVARQRVTYSMPFSPLTV 119 E A ++ L + G N FD + + + L Sbjct: 153 --------GAEFPLDDALRLLEAHLAEIDLVIGHNLLEFDRPFLEKAAQRAGVDPPHLPS 204 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + L L + + + H A+ DA ATA + Sbjct: 205 C---------VDSLHLATLVDVAMPNRSLADLTHQFNIVHQEPHRALADATATAGVVRAM 255 Query: 180 R 180 Sbjct: 256 L 256 >UniRef50_D2RA75 Exonuclease n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RA75_GARVA Length = 259 Score = 87.4 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 11/185 (5%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGE---SLYFVPHITVEQLAAADPKAMEINGYYERG 64 D ETTG + V L + E + V + +PKA E+NG+ + Sbjct: 32 FDTETTGANIGKDAIVS-ATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTDEY 90 Query: 65 LYREALTEQQTAVAWGEV--QDWLRGNTFAGSNPAFDSTIVARQRVTYSM----PFSPLT 118 L ++ + N FD ++ + + + Sbjct: 91 LKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWHLTALEERATCP 150 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFD 177 + + + + + + + L ++ GV P+ + H A D A Sbjct: 151 IHALNANDILTVDPLVIDRAVSRRSGKRTLTITSQFYGVEPIGDFHDATADTVAALDLIA 210 Query: 178 MLRHT 182 + Sbjct: 211 PMSKL 215 >UniRef50_C9KKS1 Putative DNA polymerase III subunit epsilon n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKS1_9FIRM Length = 241 Score = 87.4 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 15/185 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYER 63 ++ DLE G +E+G + + G + + + + + G + Sbjct: 41 VVSFDLEMAGAFP--DDIIEIGAIRLPLGN-DKIEVFRRLIRPRTFINRTVRDMTGLTKE 97 Query: 64 GLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 L ++ V E D++ + G D + + + Sbjct: 98 DLRDKS----TLDVILPEFLDFVDPEDLVVGHAIGDNDLLSINLALIRMNHKN---GTNI 150 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + R D A + + + L A+ E G +H A DA A+ + L Sbjct: 151 RFCPRYLDTVRLA--QQLLPKRKKYNLIALLESFGWHSKKKHRAFEDALASYVLLECLLE 208 Query: 182 TAAAH 186 +A Sbjct: 209 DSAEK 213 >UniRef50_Q5NUS9 Putative exonuclease n=1 Tax=Streptomyces albulus RepID=Q5NUS9_9ACTO Length = 288 Score = 87.0 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 48/179 (26%), Gaps = 26/179 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETT LD +E+ +L+ TG L + + DP+A ++ L Sbjct: 131 VLLDTETTALD---GQIIEIAILDAATGRPL-LDTLVKPTEGVEIDPQAHAVHRLTLEDL 186 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 +V+ + T + AFD + L W Sbjct: 187 ADA----PPWEKVLPKVRKLTKDRTILAYHAAFDRGRIIDHTEQVGKRPMHLADPDNWWC 242 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + L+ H A+GD + Sbjct: 243 -------LMQARSQFYGHGRRSLN-----------GPHRAMGDCRKERELLKKISEGHG 283 >UniRef50_Q8KQH6 DNA polymerase III epsilon subunit (Fragment) n=2 Tax=Candidatus Tremblaya princeps RepID=Q8KQH6_TREPR Length = 175 Score = 87.0 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 14/134 (10%) Query: 30 VDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN 89 + G H + A ++G + L T+ + +L G Sbjct: 1 IAGGRITGNYFHSYINPCQRMTRGAQAVHGLRDEFLA----TQPTFGAIAQRLLYFLCGA 56 Query: 90 TFAGSNPAFDSTIVARQRVTYS-MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGL 148 G N FD + V+ MP + G + + A L Sbjct: 57 VLVGHNLTFDLNFLDAGLVSAGFMPAARYCAG-----VIDTMLHLAQ----RGSRRRFSL 107 Query: 149 DAVAERLGVPVVNR 162 D + +RLGV +R Sbjct: 108 DDLCDRLGVRRGDR 121 >UniRef50_D1B1G8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B1G8_SULD5 Length = 292 Score = 87.0 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 65/184 (35%), Gaps = 11/184 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++I++D ETTG+ Y+ ++ L ++ + + + + +AM ++ Sbjct: 2 KIILLDTETTGI-YEKDRICQLAFLVLNEELEVEEIHNDLCQPPVMISYEAMAVHHITPE 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT---FAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + E Q A+ + + N +FD T++ ++ + + + Sbjct: 61 RVAHEVSCIQT--RAYQRLLEL--NTPYNLLVIHNASFDLTMLEKE--GFVSQMNLVDTF 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+ + +++ ++ V + H A+GD F+ L Sbjct: 115 RILRAYYPNEGSFSLQYKRYQWGLYHQEATFQKKHTVSIE-AHDALGDVVVLKHLFEKLC 173 Query: 181 HTAA 184 + Sbjct: 174 EEHS 177 >UniRef50_Q2B6U8 DNA polymerase III subunit epsilon n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6U8_9BACI Length = 214 Score = 87.0 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 30/178 (16%) Query: 8 VDLETTGLDYDTALPVEVGLLNVD----TGES--LYFVPHITVEQLAAAD----PKAMEI 57 VD+ETTGL +E+ + TGE + E L++ A I Sbjct: 10 VDVETTGLAPGGDEIIELAFILFSYDGATGEILQVEEKESFLREPLSSRALRNYSSAYRI 69 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + ++ + + F N +FD + + + + Sbjct: 70 HGIPFEMVRGQVFHDESV----QSFLNK-ADSVF-AHNASFDRSFMYQMYPEVN------ 117 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 L + L + + H A+ D Sbjct: 118 --------DLKWYCTMKGVQWKKYGFANSKLATLLSAHNITDHQTHRAMDDITYLMEL 167 >UniRef50_C9PFC2 DNA polymerase III epsilon subunit n=2 Tax=Vibrio RepID=C9PFC2_VIBFU Length = 238 Score = 86.6 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 53/176 (30%), Gaps = 9/176 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 L+ D ET+G+D + +G + + + + I V + IN Sbjct: 52 DLLAFDFETSGVDAGHDQILSLGWVGMTLDQIDVAASEEIFVRHPEFVTADSAVINHITP 111 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A + L G + VA+ V Sbjct: 112 QVLAHGV----TLDEAMDRLFGQLAGKIALVHGACIERAFVAQYM-RERFAIEHFPCVWV 166 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 ++ YA + L+ V R +P N HSA DA ATA F Sbjct: 167 DTLQIEKQMTYAG---KTECGTSFQLNDVRTRYALPQYNAHSAAIDALATAELFTA 219 >UniRef50_D0JAY7 DNA polymerase III subunit alpha n=2 Tax=Blattabacterium RepID=D0JAY7_BLASB Length = 1434 Score = 86.6 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 60/200 (30%), Gaps = 36/200 (18%) Query: 5 LIVVDLETTGLDYDTA----------LPVEVGLLNVDT----GESLYFVPHITVEQLAAA 50 ++VD ETTGL V+ G+ + F I Sbjct: 2 YLIVDTETTGLPISYNFSITHTDNWPRIVQFSW---QNHDILGDLIEFKNFIIKPDHYDI 58 Query: 51 DPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVT 109 A +I+G + + + E + L + G N FD ++ + + Sbjct: 59 PFNAFKIHGITNEKAEKYGVD---LSFVLCEFRKSLEKSQCLIGHNLEFDKKVIECEFLR 115 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTEL----EGLDAVAERL---GVPVVNR 162 + S ++ D + + L + ++L +P + Sbjct: 116 KKIEIS------FKKKKILDTKEISVSYCKLPGNRKKFKWPTLSELYQKLFEEKIPNL-- 167 Query: 163 HSAIGDAAATAFCFDMLRHT 182 H A D ATA CF L Sbjct: 168 HDAANDVKATARCFLELLRI 187 >UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3XEM3_9RHOB Length = 459 Score = 86.2 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 16/198 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYY 61 + DLETTG+ + P++ + D E + P+A+ + Sbjct: 2 DFVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNIRCRLAPHILPSPQALVVTRVT 61 Query: 62 ERGLYR-EALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTV 119 L + + + E + + G N FD ++ + ++ + Sbjct: 62 PDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQ-NLSPNIYAT 120 Query: 120 GRVWHHRLADLAAYAAGKLNIDPT----------ELEGLDAVAERLGVPVVNRHSAIGDA 169 + R L A A + LD +A G N H A+GD Sbjct: 121 QFNGNTRFDILPAVYAAYVRHPGLLVWPTDDTGRRSFKLDRLAPANGFNAHNAHDALGDV 180 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L T + L Sbjct: 181 EATIHI-ARLIATRSPAL 197 >UniRef50_B1P7L9 YacC n=21 Tax=root RepID=B1P7L9_ECOLX Length = 282 Score = 86.2 bits (213), Expect = 5e-16, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 14/171 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTGLD +TA +E+GL D + F + A +A ++G E+ Sbjct: 105 LFLDTETTGLD-NTAEALEIGLT--DAAGQVVFETRLKPT--VAIGAQAAAVHGISEQ-- 157 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 +++ + N FD I+ + +S P L V+ Sbjct: 158 --ALCGAPSWTDVARQLRHAIGDRPVIIFNSRFDIRILKQTAAAHSDPADWLEEMTVY-- 213 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFC 175 + A + L + A + G+ HS I DA A Sbjct: 214 --CAMELAAGYYGATNRYGTISLASAASQAGLTWEGQAHSTIADARMAAGV 262 >UniRef50_Q0EWR1 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWR1_9PROT Length = 179 Score = 86.2 bits (213), Expect = 5e-16, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 57/195 (29%), Gaps = 29/195 (14%) Query: 4 QLIVVDLETTGL--DYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++V+D ETTGL D + S V + V+ + +A I+G Sbjct: 3 DILVLDTETTGLGDDAEIIE-------IGIINGSGETVMNTLVKPTISIPEEATAIHGIT 55 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L A E++ ++G N +D ++ + + + Sbjct: 56 DNDLLNA----PVFADVVEELEGLIQGKILLIYNADYDLRLLRQSARKSKVQINL----- 106 Query: 122 VWHHRLADLAAYAAGKLNIDPTELE------GLDAVAERLG-VPVVN--RHSAIGDAAAT 172 K + L A R G VP H AI D A Sbjct: 107 --EPAEVRCVMLEYAKFFGEWNPKYENWKWQSLANAARRTGYVPAEGMLPHRAIADCVAA 164 Query: 173 AFCFDMLRHTAAAHL 187 + + A L Sbjct: 165 LHVYRHMHPENDAEL 179 >UniRef50_C1YIK4 DNA polymerase III, epsilon subunit n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YIK4_NOCDA Length = 277 Score = 85.9 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 44/161 (27%), Gaps = 10/161 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 L+ D ET+ D DTA V L+ + A+ ++G Sbjct: 54 TTPLLGFDTETSSRDPDTAFLVSAALV----DREGKARTWLVDPGPREIPADAVAVHGIS 109 Query: 62 ERGLYREALTEQQTAVAWGEVQ--DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E + G+ G N +D +++ + + + Sbjct: 110 TERARAEGRPAGECLEEIGQALADQLSSGQGLVVFNAPYDLRVLSGEMRRHGLTPLA--- 166 Query: 120 GRVWHHRLADLAAYAAGKLNID-PTELEGLDAVAERLGVPV 159 R+ + + L A+ E GV + Sbjct: 167 ERLSGPLAPVVDPLVIDRGVEPYRRGKRNLGAMCEYYGVEL 207 >UniRef50_A7B402 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B402_RUMGN Length = 300 Score = 85.9 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 17/177 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IV DLETTG++ P+ + + +D + F + E + P A I+G + Sbjct: 135 IVYDLETTGVNPWKDEPLSMCI--MDLQGKVIFEHYFRPEH-TKSWPDAAAIHGITPEKV 191 Query: 66 YREALTEQQTA-VAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRVW 123 E + ++ D + N FD + + + V R + Sbjct: 192 ANE--SPMSFYRDQIQKIFD--ASDILITYNGINFDDSFLEAAGIKLP-EVMQFDVMREY 246 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + D Y G L A G H A D AT +C+ + Sbjct: 247 AWLIHDWDEYHQGWRW------WRLIDCAAYYGYEFS-AHDAAEDVKATLYCYKKMV 296 >UniRef50_B9KC73 Putative uncharacterized protein n=1 Tax=Campylobacter lari RM2100 RepID=B9KC73_CAMLR Length = 459 Score = 85.9 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 16/189 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +IV+D ETTGL +++ + +D L F + + + +A +I+G Sbjct: 151 VIVIDTETTGLREWEDEILQLSI--IDETGYLIFDKYFKP-KYKSTWIEAQKIHGIKPAF 207 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + +A + + ++ + + G N FD + R + + P + V +++ Sbjct: 208 VQNKA-SIDNYKIQLEKIFN--DADVIIGYNLDFDLKFIKR-VIDFEKPMFCIDVMKLFT 263 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLG-------VPVVNRHSAIGDAAATAFCFD 177 + ++ + A + H A+ DA AT + Sbjct: 264 SYYHEESSILPNVDCGYSYKKLTFAAW--HFKNPNALNPLNFHGAHGALEDARATLYVLT 321 Query: 178 MLRHTAAAH 186 L T ++ Sbjct: 322 KLEQTLSST 330 >UniRef50_C5R9G6 Putative uncharacterized protein n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R9G6_WEIPA Length = 183 Score = 85.9 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 57/188 (30%), Gaps = 23/188 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K +V DLE G + +E+G + V +++ I + K+ + + Sbjct: 7 KNYVVFDLEMNGSN----QIIEIGAIKVTGSQNIEKFSVIVNNPPVGSAMKSFKY--ITK 60 Query: 63 RG------LYREALTEQQTAV-AWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPF 114 + + ++ A ++ G D ++ + Sbjct: 61 SMGGKNGWITLDMISHGICEERALNRFMRFVGDYAIVGHAIVDGDVQLIKE-----GLQH 115 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGDAAATA 173 + L + A + L +AE GV + +H A+ DA T Sbjct: 116 NNLGKWDTRGKLYDTQQIHGAIA---GNPQDISLMDLAEMYGVDLGEQKHRALPDAKETL 172 Query: 174 FCFDMLRH 181 F ++ Sbjct: 173 AIFLAMKK 180 >UniRef50_UPI0001C34DC4 sporulation inhibitor KapD n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34DC4 Length = 347 Score = 85.9 bits (212), Expect = 7e-16, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 59/192 (30%), Gaps = 33/192 (17%) Query: 5 LIVVDLE----TTGLDYDTAL----PVEVGLLNV-DTGESL-YFVPHITVEQLAAADPKA 54 IV+DLE + G + +E+G + + + + F + + K Sbjct: 4 YIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEFSRLVRPQVYRTLHYKI 63 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAF------DSTIVARQRV 108 E+ L RE Q+ A E DW + F D T + R V Sbjct: 64 SEVTHLTAEQLEREG---QKFETAVKEFFDWCGNDC------RFCTWGSMDLTELQRNMV 114 Query: 109 TYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIG 167 + M + L L T+ E LD +G+ H A+ Sbjct: 115 YHGMELP-------FQKPLYYFDLQKIYSLIQGNTKRESLDTAVLEMGIEEERPFHRALD 167 Query: 168 DAAATAFCFDML 179 DA T + Sbjct: 168 DAWYTGLVMGKM 179 >UniRef50_Q2MG35 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora echinospora RepID=Q2MG35_MICEC Length = 386 Score = 85.9 bits (212), Expect = 7e-16, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 15/141 (10%) Query: 24 EVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQ 83 EV ++++D +L V P++ ++G EA G++ Sbjct: 2 EVAVVHLDDQGNLTREWCSLVNPDRDLGPQS--VHGIS----AAEARRAPTFGQLAGQIA 55 Query: 84 DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPT 143 + L+ N +FD+ + + + + RLA AAG+ Sbjct: 56 ELLKDRVVVAHNLSFDARFLTAEFERLGIAVPIDAASGLCTMRLASHFLPAAGR------ 109 Query: 144 ELEGLDAVAERLGVPVVNRHS 164 GL L +P HS Sbjct: 110 ---GLRDCRRLLDLPDHQAHS 127 >UniRef50_A5PD63 DNA polymerase III subunit epsilon n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PD63_9SPHN Length = 297 Score = 85.5 bits (211), Expect = 8e-16, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 29/183 (15%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNV---DTGESLYFV--PHITVEQLAAADPKAMEING 59 + +VD ETTGL +T + +E+ ++ D GE + + DPK + G Sbjct: 49 VAIVDTETTGLSAETDVIIELAIMLCFVGDNGEVIGHFGPVSWLQDPGQELDPKITLVTG 108 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + + + D A N FD+ + R P Sbjct: 109 LGAQHLKNQKIN----DTVARGLLDRAD--LIAAHNAKFDAGFIER--------RYPDLA 154 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 G+ W +++ G E A+ G + H A D A F +L Sbjct: 155 GKAWACSCSEIDWLKLGY------EGRSQSALLAHAGW-FSDAHRAAADVWA---LFWLL 204 Query: 180 RHT 182 +H Sbjct: 205 QHR 207 >UniRef50_Q9APT6 DNA polymerase III n=1 Tax=Pseudomonas aeruginosa RepID=Q9APT6_PSEAE Length = 204 Score = 85.5 bits (211), Expect = 8e-16, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 28/185 (15%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLL--NVDTGESLYFVPHITVEQLAAADPKAMEING 59 ++ +++VD+E G VE+ + V GE ++ +A ++G Sbjct: 10 SEPIVIVDVEGNGHTPP--DLVELAIASFPVVEGEE---PSSWLIKPPNPITWQAKRVHG 64 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 G+V+ L+G F N + D ++ R Sbjct: 65 IGNS----SVKGSPVWEELRGDVEQQLQGKWFVAHNASIDYEVMKRHL------------ 108 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAFCF 176 W + + E L A+ G+ H A DA TA Sbjct: 109 -PDWAPVGV-IDTLKLARHVYPDAESHSLSALLAMTGLDSEVSGELHRAGEDARVTALLL 166 Query: 177 DMLRH 181 L Sbjct: 167 SRLLK 171 >UniRef50_D1HJW3 Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HJW3_VITVI Length = 303 Score = 85.5 bits (211), Expect = 9e-16, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 50/180 (27%), Gaps = 13/180 (7%) Query: 2 AKQLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 A +++ DLETT + +E G + V + + + T+ + A+ +G Sbjct: 12 AAEIVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPGDLSAVALR-SG 70 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLT 118 + ++ L G +AG N FD + Sbjct: 71 RSDGITREVVAGAPGFEEVADQIFSILNGRVWAGHNIQRFDCVRIKEAFAEIGRAAPVPV 130 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + D K + +A G+ +H ++ D Sbjct: 131 G-------MIDSLGVLTEKFGR-RAGNMKMATLATYFGLG-QQKHRSLDDVRMNLEVLKH 181 >UniRef50_B5MA46 Putative DNA polymerase III, epsilon subunit n=5 Tax=unclassified Myoviridae RepID=B5MA46_9CAUD Length = 184 Score = 85.1 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 21/183 (11%) Query: 5 LIVVDLETTGLDY-------DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 V D ETTGL + +E + D + L V I + +I Sbjct: 3 FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGEKILDEVEFI-CNPGIVIEEIITKI 61 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSP 116 G L + +V+D+ N FD ++ Sbjct: 62 TGLKNEDL----IKHPSFLDQRQKVRDFFSRADANIAHNLPFDKFMLTCDLARGKFGLDE 117 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + + + A ++ L + E P V +H A+ D Sbjct: 118 VNFPSLDICTVEESAPLFGHRM--------RLQHLYEHYCGPYVQKHRALDDVRLLHEVC 169 Query: 177 DML 179 + Sbjct: 170 KRM 172 >UniRef50_Q5YSF0 Putative DNA polymerase n=1 Tax=Nocardia farcinica RepID=Q5YSF0_NOCFA Length = 229 Score = 85.1 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 16/156 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L DLETT D +A V ++ VD G+ + +A EI+GY + Sbjct: 7 PLAAFDLETTSADPHSARVVTASIIRVDGGDVR--ARNWIANPHIPIPAEATEIHGYTDE 64 Query: 64 GLYREALT-EQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A E+ W G A N +FD T++A ++++ + Sbjct: 65 YVQKHGRPHADVIAEVTAELHACWAEGRCVAVYNGSFDFTVLATHDPSFAVSGLVVDAFV 124 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV 157 + K + L AV GV Sbjct: 125 LDK------------KYDRYRRGSRKLSAVCIHYGV 148 >UniRef50_Q1NCK1 DNA polymerase III epsilon subunit and related 3'-5' exonuclease n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCK1_9SPHN Length = 312 Score = 85.1 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 26/178 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGE-----SLYFVPHITVEQLAAADPKAMEINGY 60 + VD+ETTGLD +T +E+ + + + D + ++ G Sbjct: 67 VAVDVETTGLDRETDRIIELAVQRFRFDALGRVIQVGVPRVWREDPGIPIDLRITKLTGL 126 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + E + N AFD + R+ P G Sbjct: 127 MADDLAGQVIDETAAVEILS------SADIIVAHNAAFDRPFIDRRL--------PAIAG 172 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + W +A+L G D L L + H A D A + Sbjct: 173 KPWACSMAELDWLELG---FDGRALAHLVSQCGWF----YEGHRAENDILALIYLLAH 223 >UniRef50_D1N3T8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3T8_9BACT Length = 205 Score = 84.7 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 19/162 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAA-ADPKAMEINGYYE 62 ++ +D ET D + VGL D + I + + ++G Sbjct: 2 ILALDFETANSDPGS--VCAVGLAWFDGARITGSWESLIRPHRSCRWFSRLNIAVHGITP 59 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + W E+ G+ N AFD ++ R Y Sbjct: 60 EMVAQA----PEWGDVWPELAPHFAGSMVIAHNAAFDVPVLLRTLELYGFAPPEFDFF-- 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + + E L+ V++ LG H Sbjct: 114 --------CTCKSARRVWPGLENHKLNTVSDFLGWE-FRHHD 146 >UniRef50_C2CUZ9 DNA polymerase III subunit epsilon n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CUZ9_GARVA Length = 256 Score = 84.7 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 49/183 (26%), Gaps = 6/183 (3%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFV--PHITVEQLAAADPKAMEINGYYERGL 65 D ETTG L+ + + + +PKA ++NG+ + L Sbjct: 32 FDTETTGAILGEDSICSATLVLRNPQNKTHNDVIATWLINPHKPINPKASQVNGFTDEFL 91 Query: 66 Y-REALTEQQTAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSPLTVGRV 122 + V + N FD ++ + + + + Sbjct: 92 QENGGEPTAEIEALAAAVSLAQSKNIPLLAYNAPFDVEMLRHDLKKWDLTSLNNRPNSTI 151 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDMLRH 181 + + + T L + GV P+ + H A D A + Sbjct: 152 NDGEILVVDPLVIDRAVSKRTGKRTLTHTTQFYGVEPIGDFHDATADTVAAVDLIKPISE 211 Query: 182 TAA 184 Sbjct: 212 LHE 214 >UniRef50_C5YXX8 Putative uncharacterized protein Sb09g000300 n=1 Tax=Sorghum bicolor RepID=C5YXX8_SORBI Length = 319 Score = 84.7 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 51/179 (28%), Gaps = 18/179 (10%) Query: 3 KQLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 ++++ D+ETT +E G + V + + + T+ + + + Sbjct: 9 REIVFFDVETTAPTPAG-RWWLLEFGAILVCPRKLVEVASYDTLIRPGDLSVAVTK--RF 65 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTV 119 + + ++ + L G +AG N FD + P Sbjct: 66 SD---VEAIASAPPFKDVADKIFEILDGRVWAGHNIQRFDCPRIREAFADIGRPAPEPAG 122 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + D A + +A G+ +H ++ DA Sbjct: 123 -------VIDSLNVLAADFGR-RAGDLKMATLATYFGIG-KQKHRSLDDARMNLEVLKH 172 >UniRef50_A1AZ69 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1AZ69_PARDP Length = 303 Score = 84.7 bits (209), Expect = 2e-15, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 51/179 (28%), Gaps = 26/179 (14%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFV--PHITVEQLAAADPKAMEI 57 + + ++D ETTGLD T VE+ + + G + + + P+ + Sbjct: 53 RIVAIIDTETTGLDPTTDRLVEIAIERLSVDARGRIIEMEHPRSWREDPGRSMPPRLTLL 112 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + L A ++ GE + N AFD V + Sbjct: 113 TGLTDADLAGCAFDDESIVAQLGE------ADVIIAHNAAFDRPFVDVRFPALQHQAWGC 166 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 ++ ++ A G L H A D A A Sbjct: 167 SLTQLD-WLTLGFDGRALGHLLFQAGWYFK--------------GHRAEQDVHALATLL 210 >UniRef50_Q31EW8 Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31EW8_THICR Length = 293 Score = 84.3 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 26/179 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVG--LLNVDTG----ESLYFVPHITVEQLAAADPKAMEI 57 ++ ++D ETTGLD +E+G ++ D+ + L + E + ++ Sbjct: 42 KVCIIDTETTGLDTRVCEIIELGYQIVEFDSQGNFYQILTAKNFLN-EPEGEISAEVTQV 100 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + + + +V N AFD +V R S Sbjct: 101 TGLTLDDVKGHQIPWAEVEADMADV-QLC-----VAHNAAFDRPVVERY--------SDC 146 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + +VW + + K+ + + ++G H A+ D A Sbjct: 147 FIDKVWGCSAVQVDWFHLAKV-----GSRSQEFLCWKVGQFFYGAHRALDDVQALTHLL 200 >UniRef50_D0MET1 Exonuclease RNase T and DNA polymerase III n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MET1_RHOM4 Length = 167 Score = 84.3 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 57/182 (31%), Gaps = 43/182 (23%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 L+ D+ET+GL D A VE+ LL G E Sbjct: 7 PLLFFDVETSGLRPDRGAAIVELALL------------------------------GARE 36 Query: 63 RGLYREALTEQQTAVA-WGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + Q+ A + E+ +R G N FD V + + P+ Sbjct: 37 PLLLWKGTSAQRLQRAQFRELFAHVREGVIVGHNLRFDFWFVTYEAGRLGLAVPPIRF-- 94 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 + + + L A+ LG+ H+A+ DA AT F L Sbjct: 95 --------IDTLGLARRLLPEQADYRLVALLHALGIEPDKPLHTAVADAQATRALFWKLV 146 Query: 181 HT 182 Sbjct: 147 ER 148 >UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 Tax=Enterobacteriaceae RepID=A8GD51_SERP5 Length = 222 Score = 84.3 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 28/177 (15%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYERGL 65 V+D ET GL VEV +++ G+ I+ ++ +AM I+ E+ + Sbjct: 5 VIDTETCGL---EGGVVEVASVDLIDGQIANPMSDLISPDRPIGI--EAMAIHHITEQMV 59 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + AVA G +G+ + N AFD ++ M + + ++ Sbjct: 60 EGK----PRIAVAIGRY----QGSPYYVAHNAAFDRGVLPE------MHGAWICTMKLAR 105 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D+ Y L L H A+ D TA + Sbjct: 106 NLYPDIK-YGNQYLRYALNLDVQLPQDTTLY------PHRALYDCYVTAALLQRIIK 155 >UniRef50_A7ILL5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7ILL5_XANP2 Length = 200 Score = 84.3 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 50/196 (25%), Gaps = 20/196 (10%) Query: 9 DLETTGLD----YDTAL----PVEVGL-LNVDTGESLYFVPHIT---VEQLAAADPKAME 56 D ETTG V++ L D G + I + +A Sbjct: 6 DTETTGFFDDRLPVDHKAQPYIVQLAAQLCEDDGRPIAGFSFIIDPGIGDGINIPERAAA 65 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-----S 111 ++G + ++ + A+ + N FD + + Sbjct: 66 VHGITNERAVQFGVSTEFALSAFTHLYQRAD--MVCAHNAKFDKGVTETAISRHYGRVMP 123 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAA 170 + + + + L+ G + H A+ D A Sbjct: 124 LRKPVFCTMESATPIINLPPTDRMRAAGFNKPKPPKLEECIRHFFGEDLDGAHDAMVDVA 183 Query: 171 ATAFCFDMLRHTAAAH 186 A + L+ A + Sbjct: 184 ACRRVYFHLKSMEADN 199 >UniRef50_B0KHB9 Exonuclease RNase T and DNA polymerase III n=3 Tax=root RepID=B0KHB9_PSEPG Length = 203 Score = 83.9 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 55/207 (26%), Gaps = 25/207 (12%) Query: 1 MAKQLIVVDLETTGL--------DYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAAD 51 M++ + V D ETTG D V++ L GE + + + Sbjct: 1 MSELICVFDTETTGFPNFKAPSDHPDQPHIVDICALLYTPEGELVDSFEAMVRPDGWSIP 60 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS 111 + I+G + E + + + N +FD I+ Sbjct: 61 NEVAVIHGITNELALEHGIPEALAIEGFLNIWNQAGLR--VAHNVSFDDRIMRIALKR-- 116 Query: 112 MPFSPLTVGRVWHHRLAD--------LAAYAAGKLNIDPTELEGLDAVAERLGV----PV 159 + + + + + V E L + Sbjct: 117 FQDAWVAETFRDSPKFCTCQSTTSIVKCPPTEKMIAAGRGKQHKPPTVTEALKFFTGEDL 176 Query: 160 VNRHSAIGDAAATAFCFDMLRHTAAAH 186 V H A DA A A + L+ + Sbjct: 177 VGGHRARPDAEACARVYFALQAFQSVA 203 >UniRef50_A3WGA0 DNA polymerase III subunit epsilon n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGA0_9SPHN Length = 223 Score = 83.9 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 19/178 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 + +D E GL A ++ G G + + A + +A+ ++G E Sbjct: 44 FLALDFELDGLR-KGAHLLQAGWTPFTAGGITFQNARSLDIRSDATLNREAVTVHGIGED 102 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTVG 120 E+ L G A + T + + ++P + Sbjct: 103 RASAGL----PIGKVAEELLTALAGRVIVAHAAAIEVTAIKEAAKSLYNVNLPVRSICTL 158 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R+ H + L ER G+P H A+ DA A A F Sbjct: 159 RLEKHIHP----------GNFGADAYRLGPTRERYGLPEYRAHDALTDAIAAAELFQA 206 >UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9D3J4_9RHOB Length = 240 Score = 83.9 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 55/188 (29%), Gaps = 36/188 (19%) Query: 7 VVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYERG 64 V+D ETTG + A +E G ++VD P + + + P M ++ + Sbjct: 11 VIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKPSEPIPPVTMAVHHITDTD 70 Query: 65 LYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + W D R + A N F+ GR W Sbjct: 71 VADA----PPPGQVWQPFWDGCRSEDYVAAHNAKFEQYF-------------HDGNGRKW 113 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV----------VNRHSAIGDAAATA 173 + Y + + G A+ LG+ H A+ DA TA Sbjct: 114 ------ICTYKSALVVWPDAPSHGNQALRYWLGIDNIHPSFDRDAAQPPHRALPDAYVTA 167 Query: 174 FCFDMLRH 181 L Sbjct: 168 HILLELLK 175 >UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphaproteobacteria RepID=Q07NS2_RHOP5 Length = 490 Score = 83.9 bits (207), Expect = 3e-15, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 55/196 (28%), Gaps = 15/196 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYYE 62 + D ETTGL + V + D E+ F + P A+ N Sbjct: 3 FVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEVRSRLLPHVVPHPSALRTNRLSI 62 Query: 63 RGLYREALTE--QQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMP------ 113 L L + + W + F G N FD ++ P Sbjct: 63 ERLIDGTLPSHYEMVRAIQRTLLAW-SPSIFVGYNSIRFDEEMLRHALFQTLHPAYLTSN 121 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTEL--EGLDAVAERLGVPVVNRHSAIGDAAA 171 + A + A + + P LD +A + H A+ D AA Sbjct: 122 NGNCRADALGLIMAAATLSPACLVVPLGPEGRPIFRLDQLASVNDLKHDQAHDAMADVAA 181 Query: 172 TAFCFDMLRHTAAAHL 187 T L A L Sbjct: 182 TLDL-CRLVRERAPEL 196 >UniRef50_A6WH29 Exonuclease RNase T and DNA polymerase III n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WH29_KINRD Length = 203 Score = 83.6 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 25/175 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYERG 64 +++D E+T LD VE+ + +V ++ + DP A ++G + Sbjct: 50 VLLDTESTALD---GQLVEIAITDVHG-----APLFSSLVRPTTPVDPGARAVHGIGDEE 101 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + +++ L G N FD ++ R+ + Sbjct: 102 LQDA----PDLLMVAPQLRAALAGRHVIAYNARFDRGLLRREGERIGVDLLS------ST 151 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + Y + +D L A RL RH A+GD + A + Sbjct: 152 RWGCGMHCYTRFRGRVDSRGRH-LR--ASRL---PGARHRAVGDCRSLAEVLQEI 200 >UniRef50_UPI0000E11812 exonuclease, RNase T and DNA polymerase III n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E11812 Length = 236 Score = 83.6 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 52/181 (28%), Gaps = 16/181 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + VD E + LD TA + G + + + + + + I+G Sbjct: 35 WLAVDFEYSSLDVSTAKFMSAGWIEGNHTGIDIQSSYYRLIRAQGDLAQTPIIHGLTPSD 94 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + R + + + + + N D ++ P + Sbjct: 95 IARGV----HVRDMYEHICQFATSHIWVLHNAQLDMGMLKELSKRLQQPLPAI------- 143 Query: 125 HRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D A +L P L ER + H+A+ DA AT + Sbjct: 144 -VCIDTMQLALYQLYKKVDVIPKGGVILSKCRERYELANAPAHNALSDAMATLELWMAQM 202 Query: 181 H 181 H Sbjct: 203 H 203 >UniRef50_Q2S4M8 Exonuclease, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S4M8_SALRD Length = 236 Score = 83.6 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 20/176 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTG +E+G++ + H V LA A ++G + L Sbjct: 67 VFLDTETTGSGP-QDAVIELGVVAAQG----EVLIHTLVAPLAPVTRGARRVHGITDEEL 121 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTV-GRVW 123 + L P +D ++ + P + + W Sbjct: 122 ADA----PPFPTVADRLDTVLADAECVWTFGPTYDRRMLLQTAALAECPETHRRIQDSTW 177 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAFCF 176 D + E L A+RL V + + H A+ DA + Sbjct: 178 RDLQPD------ATRVLGDAERVALTDAAKRLDVSIPTEGHHHRALYDAKLARRVW 227 >UniRef50_C0VSD3 DNA polymerase III subunit epsilon n=3 Tax=Actinomycetales RepID=C0VSD3_9CORY Length = 310 Score = 83.6 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 56/185 (30%), Gaps = 23/185 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAAD---PKAMEING 59 ++ + +D ET + VG+ D L + + D P + ++G Sbjct: 2 QEFVSIDFET--ANEQRRSACAVGMARFDAEGKLADTYYTLLHPHPDVDYFNPVNVWVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFD---STIVARQRVTYSMPFSP 116 + ++ Q + +V ++ N AFD + + + Sbjct: 60 ITQDDVHDA----PQWSDVADDVALFIGERPIVAHNMAFDGYVLSDLDSLYGAPPLENRR 115 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 R+ LAD + +D + ++ H A DA A F Sbjct: 116 FCTVRLARKILAD----KLERKTLDQVFGYYFPS-------EPLDHHHAGFDAQAAGMIF 164 Query: 177 DMLRH 181 ++ Sbjct: 165 ARMQE 169 >UniRef50_UPI000187EE2E hypothetical protein MPER_14994 n=1 Tax=Moniliophthora perniciosa FA553 RepID=UPI000187EE2E Length = 172 Score = 83.2 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 14/158 (8%) Query: 30 VDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN 89 + ++ E + P A++++G + L + +++ +L G+ Sbjct: 1 MGNIRPADGSIYLNPE-GIPSHPMALQLHGIQDAELVA---PLPTFSAHAEQLRSFLAGS 56 Query: 90 TFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEG- 147 G N FD + + + +SP G + + A + G Sbjct: 57 IMTGYNITKFDLAFLTAEFHRCGITWSPAGEG------IGTIDTLALYRRFRPQEYKRGG 110 Query: 148 --LDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 A +G H+A DA + Sbjct: 111 KLFSAYLHFVGGWQTQAHNAEADAFTALRLLYAMVEDP 148 >UniRef50_Q2W5J8 DNA polymerase III epsilon subunit and related 3'-5' exonuclease n=11 Tax=Bacteria RepID=Q2W5J8_MAGSA Length = 306 Score = 83.2 bits (205), Expect = 5e-15, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 47/178 (26%), Gaps = 26/178 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD---TGESLYF-VPHITVEQLAAADP-KAMEINGY 60 I +DLETTGLD +E+ ++ G + Q + P + ++ G Sbjct: 53 IFIDLETTGLDPAKDEIIELAMVPFVYGLDGRIFEIQDAFQGLRQPSNPIPAEITKLTGI 112 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + A + N AFD + R ++S Sbjct: 113 TDEMVAGKVIDPAEVAAFAAPAAIVIA------HNAAFDRKFIERFCPSFS-TKPWGCSM 165 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 G L + H A D A Sbjct: 166 SQVDWTGEGFEGTKLGYLLGGFGLFH--------------DGHRATDDCHAAIEILAR 209 >UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZN4_HALNC Length = 495 Score = 82.8 bits (204), Expect = 5e-15, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 65/200 (32%), Gaps = 22/200 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP----HITVEQLAAADPKAMEINGY 60 + D ETTG D P++ L E + T+ P+A+ + G Sbjct: 3 FLFYDFETTGSDPRCDRPIQFAALR-TNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGI 61 Query: 61 YERGLY-REALTEQQTAVAWGEVQDWLR-GNTFAGSN-PAFDSTIVARQRVTYSMPFSPL 117 + L E + A + ++ G G N FD+ ++ ++ Sbjct: 62 LPQTLASSGGRPEAEFAALIH--AEMMQPGTCAVGFNSLRFDAELLRFMFWR-NLRDPYA 118 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPT----------ELEGLDAVAERLGVPVVNRHSAIG 167 + + R L A A +L L+A+ + + N H A+G Sbjct: 119 HEWKSGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKVNVIAHANAHDALG 178 Query: 168 DAAATAFCFDMLRHTAAAHL 187 D AT F L + L Sbjct: 179 DVEAT-LAFARLMRAQSPKL 197 >UniRef50_A6LS67 Exonuclease, RNase T and DNA polymerase III n=17 Tax=Clostridium RepID=A6LS67_CLOB8 Length = 209 Score = 82.4 bits (203), Expect = 6e-15, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 62/188 (32%), Gaps = 29/188 (15%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVD----TGESLYFVPHITVEQLAAADPKAMEING 59 +L+ D ETT + + ++ + VD + TV++ DP A EI+G Sbjct: 2 KLLFFDTETTSIKPGS--ICQLSYITVDASTKPQITTGKNFFFTVDE---MDPSAKEIHG 56 Query: 60 YYERGLYREALTEQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + LY E Q E + ++ + G N FD + + ++ F P Sbjct: 57 FSLEKLY-ELSDGQYFEDLVPEFLEDFMTADFLIGHNVNFDVRFLKHELLSLGEDFYPKN 115 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--------------NRHS 164 V D+ + L V + L + N H Sbjct: 116 VFCTM-AYYRDICKIPKA---NGEIKNPKLSEVIDWLNISSNQIVETSEKLFEGSGNYHD 171 Query: 165 AIGDAAAT 172 A D AAT Sbjct: 172 ARFDTAAT 179 >UniRef50_B1X404 Possible DNA polymerase III, epsilon subunit n=1 Tax=Paulinella chromatophora RepID=B1X404_PAUCH Length = 302 Score = 82.4 bits (203), Expect = 7e-15, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 55/185 (29%), Gaps = 23/185 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNV--DTGESLYFVPHITVEQLAAADPKAMEIN 58 + ++L+++D ETT L +E+G + +L + + + + + +N Sbjct: 74 LPEKLLILDTETTSLSPTDGNCIEIGAILFHLRHRATLSQIAFLLPCE----NNPSYSLN 129 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G L A + + N +FD + + Sbjct: 130 GISAETTR---LIYPWEAG-LSYFLTLVESSDLIVAHNASFDR------------QWFGI 173 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + + + +A GVPV + H A+ D + F+ Sbjct: 174 DPLPIINKPWLCSMQDINWPVQRSLRSNPSIRDLALAYGVPVWSTHRALTDCLYMSQVFE 233 Query: 178 MLRHT 182 Sbjct: 234 RCPEL 238 >UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales RepID=A6VXX3_MARMS Length = 484 Score = 82.4 bits (203), Expect = 7e-15, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 55/198 (27%), Gaps = 25/198 (12%) Query: 8 VDLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 D ETTG D P++ + D + + + + P+A + G + Sbjct: 12 FDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLTGISPQD 71 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRV- 122 RE L E + A G N FD + V Y + + Sbjct: 72 ANREGLCEAEFMQAVEAELSQPGTCAL-GYNTIRFD-----DEVVRYGFYRNFIDPYTRE 125 Query: 123 -----WHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 + DL D L+A+ + G+ H A+ D Sbjct: 126 WQNNCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKANGIAHEQAHDALSDV 185 Query: 170 AATAFCFDMLRHTAAAHL 187 T L + L Sbjct: 186 YGTIEI-AKLIRSKQPKL 202 >UniRef50_Q1WA52 Putative uncharacterized protein (Fragment) n=3 Tax=Otophysi RepID=Q1WA52_ICTPU Length = 216 Score = 82.4 bits (203), Expect = 7e-15, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 53/184 (28%), Gaps = 21/184 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + L+ DLETTGL+ V++ + S ++ + D A + G Sbjct: 31 EETLVFXDLETTGLNTSECDIVQLSAI------SGERSFNVYILPRCPIDHGASRVTGLT 84 Query: 62 ER----GLYREALTEQQTAVAWGEVQDWLR---GNTFAGSNP-AFDSTIVARQRVTYSMP 113 L+ + + A +L+ G N FD I+ R +++ Sbjct: 85 IHSRKLLLHGQPMQTVPLREALTSFISFLKTFSRPVLVGHNCKRFDRPILLRIMTEFNLL 144 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 V + D + + + + + H A D Sbjct: 145 KEFQDVVSAY----LDTLLLSREMFML---QKYSQQFLVQYFLQKSYRAHDATEDVRTLQ 197 Query: 174 FCFD 177 F Sbjct: 198 ELFR 201 >UniRef50_C0VTN4 DNA polymerase III, epsilon subunit n=3 Tax=Corynebacterium RepID=C0VTN4_9CORY Length = 224 Score = 82.4 bits (203), Expect = 8e-15, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ DLETT D A V ++ +D S ++ + +A +++G Sbjct: 8 KMVAFDLETTTNDPLKAHVVTSSVIRIDG--SNADETYLLADPGIPISEEAEKVHGISNE 65 Query: 64 GLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E+ W G T N FD TI+ + P + Sbjct: 66 YAKANGEPHDDVVAKTVELIRRGWDEGFTLIVFNGCFDLTILHQ-----CSPDFTIDGLV 120 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 V + + K + L A++E + + H++ D+ A A Sbjct: 121 VDPYIID-------KKKDHYRAGKRNLSAMSEYYEIRLDKAHNSSADSLAAARI 167 >UniRef50_Q9FLR0 Exonuclease-like protein n=4 Tax=Magnoliophyta RepID=Q9FLR0_ARATH Length = 468 Score = 82.4 bits (203), Expect = 8e-15, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 47/182 (25%), Gaps = 22/182 (12%) Query: 4 QLIVVDLETTGLDYDTAL---PVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEI 57 ++ D+ETT +E G + V + + T+ Q A ++ Sbjct: 8 EIAFFDVETT--VPKRGQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRC 65 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSP 116 NG + + A V D L G +AG N FD + Sbjct: 66 NGIKR----DDVVLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQPPE 121 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 D K + +A G+ H ++ D Sbjct: 122 PKGA-------IDSLGLLTQKFGR-RAGDMKMATLARYFGLGN-QTHRSLDDVRMNLEVL 172 Query: 177 DM 178 Sbjct: 173 KY 174 >UniRef50_UPI00016EA237 UPI00016EA237 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016EA237 Length = 186 Score = 82.0 bits (202), Expect = 8e-15, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 54/183 (29%), Gaps = 20/183 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K LI DLETTGL D ++V + G + + G+ Sbjct: 1 KTLIFFDLETTGLQTDVCNIIQVSA--ICEGRAFNGYA----VPELPLSEHVRNLTGFTV 54 Query: 63 RG--LYREALTEQQ--TAVAWGEVQDWLRG--NT-FAGSNP-AFDSTIVARQRVTYSMPF 114 G LYR + Q D+L N FD+ ++ R + Sbjct: 55 DGPYLYRHGVVMQTLLVKDLLRRFIDYLSQFYCPLLVAHNAERFDAPVIMRVMAENGLLQ 114 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 V + + Y K L A+ + + H+A+ DA Sbjct: 115 RFRQVVSGF------VDTYQLIKRLNPCLPGYSLTALVRQFLGQRFDAHNALEDAKILEK 168 Query: 175 CFD 177 F Sbjct: 169 LFI 171 >UniRef50_D2QVF1 Exonuclease RNase T and DNA polymerase III n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QVF1_9SPHI Length = 193 Score = 82.0 bits (202), Expect = 8e-15, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 54/192 (28%), Gaps = 19/192 (9%) Query: 4 QLIVVDLETTGLD-----YDTA-----LPVEVGLLNV-DTGESLYFVPHITVEQLAAADP 52 +++D ET GL T + V + G+ L I + Sbjct: 2 TYLIIDTETNGLPQSYHLPVTDLTNWPRLISVAWGLYDEEGKELCRHYAIVKPDGYRWNK 61 Query: 53 KAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYS 111 A +I+ + Q ++ + + G N D ++ + + Sbjct: 62 VAQQIHRITPEQAETKG---QPLDDVLNQLCPAMERADAWVGHNIDLDYGVIGAEFIRAE 118 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAA 170 L + A E LD + + L G + H A D Sbjct: 119 QRQPGRVGEFPARPVLCTMDVSAK---VTPNREPVRLDELYQLLTGKKMKGMHDASADML 175 Query: 171 ATAFCFDMLRHT 182 AT CF L+ Sbjct: 176 ATVRCFFGLKQR 187 >UniRef50_A6W8W5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8W5_KINRD Length = 218 Score = 82.0 bits (202), Expect = 9e-15, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 66/203 (32%), Gaps = 35/203 (17%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI----- 57 + L+ D ETTGL E+ L+ + + + + A+P A++I Sbjct: 4 RPLVFFDTETTGLGPGR-QAWEIALVRREPDGTERPLEFFLPIEEVRAEPGALDIGRYYA 62 Query: 58 ---NGY-----------YERGLYREALTEQQ--------TAVAWGEVQDWLRGNTFAGSN 95 +G Q A + W G T G+N Sbjct: 63 RHPHGIAISTIPAQPPFTTPKPADAPRPVPQEPGPVVLAVPKAARLLAQWTSGATIVGAN 122 Query: 96 PAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL 155 PAFD I+ R T WH+R D+ A A G + + A A + Sbjct: 123 PAFDVQILERLVRTDGH-------APRWHYRTRDVEAMAVGFIGDEDLGGLAACAAALDV 175 Query: 156 GVPVVNRHSAIGDAAATAFCFDM 178 + H+A+GD +D Sbjct: 176 TIDPDLEHTAMGDVRTVMAIYDA 198 >UniRef50_Q8DQ14 DNA polymerase III, epsilon chain n=57 Tax=Streptococcus RepID=Q8DQ14_STRR6 Length = 208 Score = 82.0 bits (202), Expect = 9e-15, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 56/189 (29%), Gaps = 26/189 (13%) Query: 3 KQLIVVDLETTGLDYDTAL----PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 + I DLE ++ ++V + G + V + Sbjct: 17 EDYIAFDLE-----FNQHEGQTHLIQVSAVRFRDGREID-AYDSYVHTSVPLKSFINGLT 70 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPL 117 G L E Q+++ G N A D I+A + + +S Sbjct: 71 GITAETLKDA----PPVEKVLEEFQEFVGSLLMIGYNAAKSDLPILAE----HGLDYSQQ 122 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ ++ ++ L VA LG H+++ DA TA ++ Sbjct: 123 YKVDLYDEAFERRSS------DLHGIANLKLQTVASFLGF-QGQSHNSLEDARMTARVYE 175 Query: 178 MLRHTAAAH 186 + A Sbjct: 176 SFLESDQAR 184 >UniRef50_A0YUY5 Putative uncharacterized protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YUY5_9CYAN Length = 829 Score = 81.2 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 50/188 (26%), Gaps = 46/188 (24%) Query: 3 KQLIVVDLETTGLDYDTALPV-EVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI-NGY 60 +VVD E + + E+ + +D+ L F +T + I G Sbjct: 2 PDYVVVDTE---GNP----LLKEIAV--IDSSGILIFEAIVT--------NSSQSIKTGI 44 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L ++ D ++ + LT+ Sbjct: 45 RVQML----------ETVLNNFIKVIQNKILVFHYAEHDLKVLYYSFKAAGITPPKLTIR 94 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-------RHSAIGDAAATA 173 W K + L+A+++ L + + H A DA T Sbjct: 95 CTW----------ELSKFYYPRMQSYSLEALSKFLHLKINGKRFNSSLAHRAKYDALFTH 144 Query: 174 FCFDMLRH 181 + L Sbjct: 145 QLYQHLMK 152 >UniRef50_A5Z7C9 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7C9_9FIRM Length = 334 Score = 81.2 bits (200), Expect = 2e-14, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 50/199 (25%), Gaps = 44/199 (22%) Query: 4 QLIVVDLETTGLDYDTA-------------LPVEVGLLNVDTGESLYFVPHITVEQLA-- 48 IV+DLE ++ +E+G + V V + Sbjct: 3 DYIVMDLE-----WNQNPYGKSHCHTDLTFEIIEIGAVRVSDDRKTIVDSFQQVIKPRVF 57 Query: 49 -AADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAF------DST 101 K EI + E L + +W + F D T Sbjct: 58 KKLHYKIQEITHFTEEELNDGK----DFRKVIRDFLEWCGDDYI------FCTWGSMDLT 107 Query: 102 IVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 + + Y++ + D L + E L + + Sbjct: 108 ELQKNMKHYNLER------VLDFPLFYVDLQKMFSLRYDDGHMKRNLTSAVEYLNIQEEH 161 Query: 162 R-HSAIGDAAATAFCFDML 179 H A+ DA TA + Sbjct: 162 EFHRALSDAYYTARILQSM 180 >UniRef50_Q81AM4 DNA polymerase III, epsilon chain n=71 Tax=Bacillus RepID=Q81AM4_BACCR Length = 281 Score = 81.2 bits (200), Expect = 2e-14, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 53/181 (29%), Gaps = 18/181 (9%) Query: 5 LIVVDLETTGLDYDTAL----PVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEING 59 IV D+E + V++G + ++ G + + A ++ G Sbjct: 7 FIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSELVKPSARLTRHTTKLTG 65 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 ++ + ++ + ++ G+ F D ++ Y + + Sbjct: 66 IT----KKDLMGVEKFPQIIEKFIQFIGEGSIFVSWGKE-DYRFLSHDCTLYGVECPSIE 120 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFD 177 DL + L E+L + +H A+ DA TA Sbjct: 121 KENR-----IDLQKFVFQAYEELFEHTPSLQFAVEQLALTWEGKQHRALADAENTANILL 175 Query: 178 M 178 Sbjct: 176 R 176 >UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFI1_LIBAP Length = 471 Score = 80.9 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 59/196 (30%), Gaps = 14/196 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEI 57 M ++ D ET G D P + + VD + + A DP+A+ I Sbjct: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFD---------STIVARQR 107 G + R+ + E + + + + G N FD R Sbjct: 61 TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119 Query: 108 VTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIG 167 ++ S + V A D L +A G+ VN H A Sbjct: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 Query: 168 DAAATAFCFDMLRHTA 183 D AT ++R Sbjct: 180 DVYATLALVWLIREKK 195 >UniRef50_B9KV46 Exonuclease n=1 Tax=Rhodobacter sphaeroides KD131 RepID=B9KV46_RHOSK Length = 293 Score = 80.9 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 47/177 (26%), Gaps = 20/177 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVG-LLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + I +D+ET D + ++G F + DP + ++G Sbjct: 11 RFIALDVETACSDAGS--ICQIGLACVFPDNRIHTFSTLVNP--GTRFDPFNVRLHGIGP 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + L + FD + + Sbjct: 67 DHVSGAL----RFDELLDHLFPLLSRHHLVQH-SNFDKQALNAACRSCGREPPDF----- 116 Query: 123 WHHRLADLAAYAAGKLN-IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R AD A + GL + LG+ N H A DA A A Sbjct: 117 ---RWADSVTIARRAWPELLRNGGHGLGNLKRVLGLD-FNHHDAGEDARAAALVVLH 169 >UniRef50_Q0SR27 Exonuclease family protein n=9 Tax=Clostridium perfringens RepID=Q0SR27_CLOPS Length = 300 Score = 80.5 bits (198), Expect = 3e-14, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 18/165 (10%) Query: 20 ALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAV 77 +E+G + ++ E F +I +PK ++I G E L + Sbjct: 37 NEIIEIGAIKLNKFMQEVDEFKTYIKPSVFKVLNPKIIDITGITEDHLKDGI----KFED 92 Query: 78 AWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAG 136 A ++D++ + D + +S W + D+ Y Sbjct: 93 AMDNLKDFIGEDDILCSWATD-DIVHIVNNAKYHSYKNIS------WIKKYIDIQKYCTK 145 Query: 137 KLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 L + L E L + + H A+ DA TA F L Sbjct: 146 ILAHK--KSLSLKHALEELKIKIDKSKLHDALNDAVYTAEVFKRL 188 >UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas RepID=B4SPA5_STRM5 Length = 479 Score = 80.5 bits (198), Expect = 3e-14, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 50/195 (25%), Gaps = 19/195 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEI 57 MA + DLET G D + + D + P A + Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSP 116 G + E ++E + E G N FD V + Sbjct: 61 TGITPQQALAEGISEAEAFDRINEQLSRPGTCAL-GYNTLRFDDEFVRYGLFR-NFHDPY 118 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPT----------ELEGLDAVAERLGVPVVNRHSAI 166 R + R L + L+ +AE V + H A+ Sbjct: 119 EREWRNGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEAL 178 Query: 167 GDAAAT---AFCFDM 178 D AT A F Sbjct: 179 SDVRATIGMARLFKQ 193 >UniRef50_A1K7L4 DNA-directed DNA polymerase n=3 Tax=Rhodocyclaceae RepID=A1K7L4_AZOSB Length = 214 Score = 80.5 bits (198), Expect = 3e-14, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 46/174 (26%), Gaps = 34/174 (19%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V++ E TGLD D + VG + VD G + Sbjct: 45 YTVLNTEATGLDLDKDTMLAVGAIRVDGGRFSPADGYYAPLSGQP--------------- 89 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 A A + ++ N F+ ++ R T+ L V W Sbjct: 90 -----------AAALAGLLHFVGKGPVVVFNTGFNRVMLERALATH------LDVAPTWQ 132 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 DL L + RH A+GD A A F Sbjct: 133 --WLDLRVLLPALFPERIDRPARLADWMRAFSIETFQRHHALGDCWAIAQLFLA 184 >UniRef50_A7GE01 Putative DNA polymerase III, epsilon subunit n=10 Tax=Clostridium RepID=A7GE01_CLOBL Length = 195 Score = 80.5 bits (198), Expect = 3e-14, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 34/200 (17%) Query: 6 IVVDLETTGLDYDTALPVE----VGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 I +D ETTGL+ ++ V +N E ++F + + + + A I+G+ Sbjct: 4 IFIDTETTGLEPG--EIIQLTYCVCDINFRGEEKVFFAKNFFFD-VDYIEESAEAIHGFS 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS----MPFSPL 117 L + ++ E+ L+ F N FD V + + +P Sbjct: 61 VEKL-KILSKGKKFKDLASEISSDLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPKEFF 119 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP----VVNR----------- 162 + + + L+ + L + + Sbjct: 120 CTMEYFKPIV-------KATTRTGKLKKPRLEEAVDFLNIDKKIVLKGAKKLFNCDDVGF 172 Query: 163 HSAIGDAAATAFCFDMLRHT 182 H A D AA C+ + Sbjct: 173 HDARYDVAALVSCYYRAKRL 192 >UniRef50_A1YZY0 Gram-positive type DNA polymerase III alpha subunit n=1 Tax=Burkholderia ambifaria phage BcepF1 RepID=A1YZY0_9CAUD Length = 197 Score = 80.1 bits (197), Expect = 4e-14, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 45/190 (23%), Gaps = 31/190 (16%) Query: 5 LIVVDLETTGL--DY-----DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 V D ETTGL +E + V G + A + +I Sbjct: 3 FTVFDTETTGLPSHPLAPLDRQPRIIEFAGI-VTDGRDILHTLEFRCNPGVALEEIITKI 61 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF------------AGSNPAFDSTIVAR 105 G + L + + +GE++ + N +FD ++ Sbjct: 62 TGLTDADLRD----QPDISHFFGELKSFFGKEPMPHVFGEKPKFARVAHNLSFDRNLLDY 117 Query: 106 QRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSA 165 L + + L + R +H A Sbjct: 118 DLKRRG---KTLDDIGFNDALMICTVEQTTPQFGRP----MKLQELWSRARGEFTQKHRA 170 Query: 166 IGDAAATAFC 175 + D Sbjct: 171 LDDVMRLHDV 180 >UniRef50_C4V0M2 Putative uncharacterized protein n=2 Tax=Selenomonas RepID=C4V0M2_9FIRM Length = 179 Score = 80.1 bits (197), Expect = 4e-14, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 52/181 (28%), Gaps = 15/181 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++++V D ETTG D + + ++ G V + A P A IN Sbjct: 2 EKILVFDTETTGFRSD-DEVLTLAVV---NGTGETMVDSMYAPVRKAEWPDAERINRISP 57 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + G N FD ++A+ + + + Sbjct: 58 AMVADCDPIL-THREELECLFN-APDTLLVGYNIEFDIRLLAQSGIRITNANRHDVMLAF 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAE--RLGVPVVNRHSAIGDAAATAFCFDMLR 180 R L AE R H A+ D AT FC+ + Sbjct: 116 SAFR-------KVPDARRGGYRWWKLTECAEYYRYDWGTTVAHGALADTLATLFCYRKMS 168 Query: 181 H 181 Sbjct: 169 E 169 >UniRef50_Q0RM97 Putative DNA-directed DNA polymerase n=1 Tax=Frankia alni ACN14a RepID=Q0RM97_FRAAA Length = 238 Score = 79.7 bits (196), Expect = 4e-14, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 51/191 (26%), Gaps = 29/191 (15%) Query: 1 MAKQLIVVDLETTGL-DYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI-N 58 L+ +DLE TG D D +E+ L+ + G + TV + Sbjct: 30 QDAALVAIDLEGTGAQDGDQEDILEIALVPLHAGAMQIAESYTTVINPGRRIAARPWLSP 89 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + L E+ L G G N D ++ R+ Sbjct: 90 GLTNQVLAG----SPPLGRVEPELAARLNGRILVGHNVGVDWRLLHRRC----------- 134 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV--------VNRHSAIGDAA 170 V L D A L + +R + H A+ DA Sbjct: 135 -PTVTPAGLLDTLRLARHLGVRTGNP---LTTLLDRHDLTRQVTELAAGSQPHRALWDAI 190 Query: 171 ATAFCFDMLRH 181 L H Sbjct: 191 GAGLLLATLTH 201 >UniRef50_A7VNP2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VNP2_9CLOT Length = 172 Score = 79.7 bits (196), Expect = 5e-14, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 52/182 (28%), Gaps = 31/182 (17%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETT LD +E+ +++ TG L I Q A +A ++ L Sbjct: 17 VILDTETTDLD---GRIIEISIIDAATGTVL-MDQLINP-QGAPICAEARTVHHISPDDL 71 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 T ++D + N FD + + + Sbjct: 72 A----TAPTFTQVRPRLEDVVADRVVMAWNAPFDRERIEAEYALAGLDAPA--------W 119 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAAA 185 L A + + LD H +GD A L+ A Sbjct: 120 PWCCLMRLEASVM---GCQWRRLD-----------GPHRGLGDVIAARRRLIALQEMRVA 165 Query: 186 HL 187 + Sbjct: 166 RM 167 >UniRef50_Q9FLJ5 Exonuclease-like protein n=3 Tax=Arabidopsis thaliana RepID=Q9FLJ5_ARATH Length = 500 Score = 79.7 bits (196), Expect = 5e-14, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 53/184 (28%), Gaps = 25/184 (13%) Query: 4 QLIVVDLETT-----GLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAAD---PKAM 55 ++ D+ETT G Y +E G + V + + + + + A + P+++ Sbjct: 12 EIAFFDVETTIPFRVGQGYA---ILEFGSILVCPKKLVELKNYSVLVRPANLNLITPRSV 68 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPF 114 + NG + A V D L G +AG N FD + Sbjct: 69 KCNGIKREDVESAL----TFADIADTVYDILHGRIWAGHNILKFDCPRIREAFAEIGRDP 124 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 D A + + +A G+ H ++ D Sbjct: 125 PEP-------KGTIDSLALLTQRFGR-RAGDMKMATLATYFGLGN-QTHRSLDDVRMNFE 175 Query: 175 CFDM 178 Sbjct: 176 VLKY 179 >UniRef50_B8HJ08 Exonuclease RNase T and DNA polymerase III n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJ08_ARTCA Length = 187 Score = 79.7 bits (196), Expect = 5e-14, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 50/185 (27%), Gaps = 21/185 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK---AMEINGYY 61 +D E + D A VG+ V G + + D A I+G Sbjct: 9 FTAIDFEA--ANSDRASACSVGVTTVRDG-LITGTTSWLIRPFTGLDSFDAYASRIHGID 65 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + Q A + + N +D+T++ + Sbjct: 66 ----ASMVIDAQPLKDAMLRLSGIIGDGPVLAHNITYDATVLRHSFELTGLGQP------ 115 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + L E L V LG+P + H A D+ A A + Sbjct: 116 --RNEFRCTQTLSRAAL---QLEKTRLHVVTAYLGLPEFDNHDAAADSLACARIALHIAA 170 Query: 182 TAAAH 186 A Sbjct: 171 RRRAS 175 >UniRef50_UPI0000D55BE7 PREDICTED: similar to three prime repair exonuclease 1 n=1 Tax=Tribolium castaneum RepID=UPI0000D55BE7 Length = 319 Score = 79.3 bits (195), Expect = 6e-14, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 14/145 (9%) Query: 1 MAKQLIVVDLETTGLDYDTA---LPVEVGLLNVDTGES-------LYFVPHITVEQLAAA 50 K + +DLETTGL + E+ ++V + + + Sbjct: 30 QIKTFVFLDLETTGLPHLEHNKTRITELCAVSVRADHIELGCFPRVQNKLSLCFNPMKMI 89 Query: 51 DPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPA-FDSTIVARQRV 108 P+A + G L +A + + + N FD I+ + Sbjct: 90 SPEATSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPICLVAHNGNRFDYPILRAEVE 149 Query: 109 --TYSMPFSPLTVGRVWHHRLADLA 131 +P L + + R D Sbjct: 150 KTRNKLPEDILCLDSLNAFRSIDTL 174 >UniRef50_A6GY64 Probable exonuclease n=1 Tax=Flavobacterium psychrophilum JIP02/86 RepID=A6GY64_FLAPJ Length = 188 Score = 79.3 bits (195), Expect = 7e-14, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 62/184 (33%), Gaps = 32/184 (17%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEING 59 ++ + + +ETTG++ + +G + ++ + + I + + Sbjct: 26 QTERKVALYIETTGINPAKDKIISIGAIAIEKNQIRIDNCLEIELNK------------- 72 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + + Q+ A + +++ T G +D I+ L Sbjct: 73 --AEILEGKDFSYQEI-QAIESLINFIGNATLVGHRIHYDIQIINEYLH-------KLQS 122 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH---SAIGDAAATAFCF 176 GR+ ++ L + G++ + L + + H SA A + A F Sbjct: 123 GRIKNNLLDVEVMH--GRIIDQNAKQFSLTELLSIYKIDS--PHIPTSANM-AFSIALLF 177 Query: 177 DMLR 180 L+ Sbjct: 178 LKLK 181 >UniRef50_Q9BQ50 Three prime repair exonuclease 2 n=14 Tax=Mammalia RepID=TREX2_HUMAN Length = 279 Score = 79.3 bits (195), Expect = 7e-14, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 49/198 (24%), Gaps = 22/198 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVG--LLN---VDTGESLYFVPHITVE----------Q 46 A+ + +DLE TGL E+ ++ ++ E + Sbjct: 50 AETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCP 109 Query: 47 LAAADPKAMEINGYYERGLYREALTEQQTAVA--WGEVQDWLRGNT-FAGSNPAFDSTI- 102 KA EI G GL R AV G N FD Sbjct: 110 ERPFTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHN-GFDYDFP 168 Query: 103 -VARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPVV 160 + + TV L L + + L ++ Sbjct: 169 LLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPS 228 Query: 161 NRHSAIGDAAATAFCFDM 178 HSA GD F Sbjct: 229 AAHSAEGDVHTLLLIFLH 246 >UniRef50_A3DCR5 Exonuclease, RNase T and DNA polymerase III n=3 Tax=Clostridium thermocellum RepID=A3DCR5_CLOTH Length = 215 Score = 78.9 bits (194), Expect = 7e-14, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 55/189 (29%), Gaps = 37/189 (19%) Query: 5 LIVVDLETTGLDYDT------ALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAME 56 IV DLE L+ +E+G + ++ E F I + + Sbjct: 3 YIVYDLE---LNSKPFKSSIPNEIIEIGAIKLNENLQEIGMFSSFIKPKYFKKLFSVVKQ 59 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFA---GS----NPAFDSTIVARQRVT 109 + + + + W+ + G N I+ + Sbjct: 60 KTKITQEQIN----SADSFRNVIKQFIRWIGDDYLLISWGHDDVLNL-----ILNCKFNR 110 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGD 168 + W R D+ + ++ + L+ +GV + N H A+ D Sbjct: 111 IKID---------WLKRNIDIQKQFSAIYHLPSGQRYSLENALALIGVEIDENLHRALTD 161 Query: 169 AAATAFCFD 177 A TA F Sbjct: 162 AQYTAKIFK 170 >UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKN8_DESAH Length = 471 Score = 78.9 bits (194), Expect = 7e-14, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 53/192 (27%), Gaps = 16/192 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLN--VDTGESLYFVPHITVEQLAAADPKAMEINGY 60 K + D+ET+GL+ + + ++ E I++ P A + Sbjct: 2 KTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVISLRNDIVPSPGAFITHRL 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTV 119 L Q A + + G N FD + ++ Sbjct: 62 TPEDLKDGLCEYQGVA-LIHRLLN-TPDTISIGYNSLGFDDEFLRFAFYR-NLLDPYTHQ 118 Query: 120 GRVWHHRLADLAAYAAGKLNIDPT---------ELEGLDAVAERLGVPVVNR-HSAIGDA 169 R+ L ++ L+ ++E+ + R H A+ D Sbjct: 119 YANDCARMDLLPIATLYRIFKPDGIHWPVIDDKASMRLELISEKNNLVQSGRAHDAMTDV 178 Query: 170 AATAFCFDMLRH 181 AT L Sbjct: 179 EATLALARRLSG 190 >UniRef50_C7NAB6 Exonuclease RNase T and DNA polymerase III n=4 Tax=Fusobacteriaceae RepID=C7NAB6_LEPBD Length = 212 Score = 78.9 bits (194), Expect = 8e-14, Method: Composition-based stats. Identities = 23/209 (11%), Positives = 52/209 (24%), Gaps = 38/209 (18%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTG------------ESLYFVPHITVEQLAA 49 K +I D+ET G + + + + V+ + F + Sbjct: 8 NKNIIFFDVETNGF--QGSSVLSMSAIKVNYNSENTGEEKNKWKKVSEFNRFYFRNEGEE 65 Query: 50 ADPKAMEINGYYER--------GLYREALTEQ-QTAVAWGEVQDWLRG-NTFAGSNPAFD 99 + A+ +NG + + + + + + F N FD Sbjct: 66 LNEGAVSVNGLTDDVILSERKSIIQNTGIEYPLTFKEDMDNFFLFCQDTSHFVAHNIKFD 125 Query: 100 STIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV 159 + V + + L ++ + + L A +P Sbjct: 126 RSFVD------------FPLQNQFDTMLTNIDIVKVNGSSYGNYKWPKLMECANYYNIPF 173 Query: 160 VNR--HSAIGDAAATAFCFDMLRHTAAAH 186 H + D F + + Sbjct: 174 EESQLHGSYYDVLIMFRIFFKMMKHKTGN 202 >UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z9I3_9GAMM Length = 483 Score = 78.9 bits (194), Expect = 8e-14, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 53/193 (27%), Gaps = 17/193 (8%) Query: 9 DLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEINGYYERGL 65 D ET+G + P++ + D ++ P + + + P A+ + G Sbjct: 11 DYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAIRVTGISPYKA 70 Query: 66 YREALTEQQTAVAW-GEVQDWLRGNTFAGSN-PAFD---------STIVARQRVTYSMPF 114 E E E + G G N FD + Sbjct: 71 LAEGANEGAFMAKIQREFM--VPGTCALGYNSVRFDDEITRFALYRNFFPPYAREFGQNR 128 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 S + V A + D L+ + G+ N H A+ D AT Sbjct: 129 SRWDLIDVARAIYALRPDGIVWPIREDGLPSFRLEDLTAANGIDHGNAHDALADVLATIA 188 Query: 175 CFDMLRHTAAAHL 187 L A L Sbjct: 189 L-AKLLSKAQPTL 200 >UniRef50_C3JCF9 Exonuclease n=2 Tax=Bacteria RepID=C3JCF9_9PORP Length = 257 Score = 78.9 bits (194), Expect = 8e-14, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 57/204 (27%), Gaps = 33/204 (16%) Query: 5 LIVVDLETTGL-----DYDTA--LPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAM 55 +++ D +TTGL + +++ +D+ E I+ +A Sbjct: 50 IVLFDTDTTGLPNAPIQREEDSPELIQLAWCVLDSHLREVKRCNRFIS---GINVPSEAT 106 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQ-DWLRGNTFAGSNPAFDSTIVARQRVTYS--- 111 I+G L + E DW N AFD I+ + Sbjct: 107 AIHGITTEELKQRGEAA---RDVLLEFLSDWDGDTLLVAHNLAFDLHILGKALERAGCTQ 163 Query: 112 --MPFSPLTVGRVWHHRLADLAAY----------AAGKLNIDPTELEGLDAVAERL--GV 157 + + + + + A + +P + L + L Sbjct: 164 GQIRKVSCHAAQYSYCTMLETCNLCKLPHLEHTNARAIPHQEPYKYPRLGELHSFLFGND 223 Query: 158 PVVNRHSAIGDAAATAFCFDMLRH 181 P H A+ D CF L Sbjct: 224 PTGETHDAVQDLDTCVRCFYQLIK 247 >UniRef50_C4RLL5 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RLL5_9ACTO Length = 303 Score = 78.9 bits (194), Expect = 9e-14, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 41/160 (25%), Gaps = 13/160 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ DLE T + V L++ D V+ A +G + Sbjct: 82 PVVGFDLEGTLPEPMETRIVSAALVHSDG-----TTREWLVDPGVPIPADATARHGITDE 136 Query: 64 GLYREALTE-QQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A + + + +D T + + + +P Sbjct: 137 MVRTGGRPARDALAELGTAIAKLIADSTPLVAFCAPYDVTALHTELARHGLPALD----- 191 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 W + + ++ L + V + N Sbjct: 192 -WDRAVVIDPSVLHQQVEPRWYGRRQLGDLCRYYEVTLDN 230 >UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xanthomonas albilineans RepID=D2UDX2_XANAL Length = 492 Score = 78.9 bits (194), Expect = 9e-14, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 49/185 (26%), Gaps = 14/185 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEI 57 M + DLET G D + + D + P A I Sbjct: 14 MPDSFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPVATLI 73 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFS 115 G + RE + E E + T G N FD + P+ Sbjct: 74 TGITPQQALREGINEADAFARIAEQMAQPQTCTL-GYNSLRFDDEFIRHGLFRNFHDPYE 132 Query: 116 PLTVGRVWHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIG 167 G L D+ D L+ +A GV + H A+ Sbjct: 133 REWRGGNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVRDGDAHEALS 192 Query: 168 DAAAT 172 D AT Sbjct: 193 DVYAT 197 >UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus capsulatus RepID=Q605A2_METCA Length = 478 Score = 78.5 bits (193), Expect = 1e-13, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 51/192 (26%), Gaps = 15/192 (7%) Query: 9 DLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 DLET G D + L D V + P A + G + Sbjct: 11 DLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVTGITPQYA 70 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVT-YSMPFSPLTVGRVW 123 + E + G N FD ++ P++ G Sbjct: 71 AELGVPESAFIATIHRIFMRPGTCVL-GYNTLRFDDEMLRHAFYRNLYDPYAREWKGGNS 129 Query: 124 HHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + DLA + + L+ +A G+ + H A+ D AT Sbjct: 130 RWDVIDLARLTQALRPDGIEWPRDSLGSPVFKLERLAAANGIRHESAHDALSDVRATVA- 188 Query: 176 FDMLRHTAAAHL 187 F L L Sbjct: 189 FARLIAERQPRL 200 >UniRef50_C0FN99 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FN99_9FIRM Length = 574 Score = 78.5 bits (193), Expect = 1e-13, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 20/183 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D+ET GL A + + D G+ + + +E ING E+ Sbjct: 10 EYVVFDVETNGLKSKQADLLSISFYKPDDGK--EYSKFLPLELNRKIV--TTHINGITEQ 65 Query: 64 GLYRE-ALTEQQTAVAWGEVQDWLRGNTFAGSNP--AFDSTIVARQRVTYSMPFSPLTVG 120 L ALT+ + E + L FD++ ++ + + Sbjct: 66 DLVGATALTQLEFDRIVEEFE--LEKRIILIY-AGGNFDASFLSAYMKRHRILGFEKLNF 122 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-VVNRHSAIGDAAATAFCFDML 179 + + + + + D + V V HS D F+ + Sbjct: 123 YNFKKNII------SSRFSHGNITK---DNLCSIFKVDGVKTVHSGSNDCKLEWKLFEKM 173 Query: 180 RHT 182 Sbjct: 174 EGY 176 >UniRef50_D1PLI9 Exonuclease family protein n=4 Tax=Ruminococcaceae RepID=D1PLI9_9FIRM Length = 318 Score = 78.2 bits (192), Expect = 1e-13, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 54/191 (28%), Gaps = 28/191 (14%) Query: 5 LIVVDLETT-GLDYD-----------TALPVEVGLLNVD--TGESLYFVPHITVEQLAAA 50 LIV DLE G +++G ++ F ++ Sbjct: 3 LIVFDLEWNIGYQPKTFLYHGTELTLRGEIIQIGAARINEWGDVLDTFEVNLRPRIFRKL 62 Query: 51 DPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVT 109 ++ G + L + DW A D ++ + Sbjct: 63 QHHIAKVTGLSQGDLDAGM----PMKEGLQKFLDWAGPDAELAEWGLD-DVPVLKQNLFL 117 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGD 168 + W R DL E L++V +RLG+P H+A+ D Sbjct: 118 NGLD-------ERWPERWYDLQRIFLQTYPRKEGEGMTLESVVDRLGIPKEEPFHNALDD 170 Query: 169 AAATAFCFDML 179 A TA L Sbjct: 171 ALYTAKICRKL 181 >UniRef50_A6VF58 Exonuclease RNase T and DNA polymerase III n=2 Tax=Methanococcus maripaludis RepID=A6VF58_METM7 Length = 189 Score = 77.8 bits (191), Expect = 2e-13, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 50/156 (32%), Gaps = 8/156 (5%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTGL+ ++ + D ++ +I ++ + + KA ++G L Sbjct: 3 VFLDTETTGLEPGQ--IAQISYIISDDDLNIQKAENIYF-KVNSMETKAQSVHGLSIEKL 59 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + ++ D + N FD + + V + + P + H+ Sbjct: 60 E-LLSDGKSFTDHANQILDDIDQKILICHNVPFDYKFLNSEFVRCGIEYDPKKFCTMNHY 118 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 + L+ + L + Sbjct: 119 ----TNLCGIPNPYRPGYKWPRLEETLDFLSIEKSE 150 >UniRef50_C5B4H5 Putative Exonuclease n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4H5_METEA Length = 190 Score = 77.8 bits (191), Expect = 2e-13, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 57/188 (30%), Gaps = 22/188 (11%) Query: 5 LIVVDLETTGL--------DYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME 56 L D ETTG VE+G + ++ + P M Sbjct: 2 LAAFDTETTGTPAPGLPLRHPRQPRIVEIGCVLYYPDGAVADTFRTFLRPDGFTIPMEMR 61 Query: 57 -INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAG-SNPAFDSTIVARQRVTYSMPF 114 ++G RE L A A+G ++++L G FD+T+VA + + P Sbjct: 62 DLHGITVSAARREGLPA---AEAFGRLKEFLAGAGRIAVHFVPFDATMVAIEIA-HGAPD 117 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVVNRHSAIGDAAATA 173 AA L + LD LG P H A+ DA Sbjct: 118 PFGPGREFA-------CTSAAAGLAVRGEGHLALDEACAGILGRPPRRHHRALPDALDAM 170 Query: 174 FCFDMLRH 181 L Sbjct: 171 DLAIALER 178 >UniRef50_UPI0001699634 exonuclase n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699634 Length = 168 Score = 77.8 bits (191), Expect = 2e-13, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 8/120 (6%) Query: 13 TGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYERGLYREALT 71 TGL + +GL+N+ + V ++ P++ I+ + Sbjct: 6 TGLKPKQDSILSIGLVNIRALQIHLDTAWHRVIRVEQQIPESSAVIHQITDDHAAAGI-- 63 Query: 72 EQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMPF--SPLTVGRVWHHRLA 128 A ++ L G + + + Y PF + + A Sbjct: 64 --PLEEALPQLLRQLSGKVMLAHYKSIEQNFLDAACQRLYGTPFIIPIIDTLELAQRLFA 121 >UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSN1_AZOVD Length = 476 Score = 77.4 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 13/186 (6%) Query: 9 DLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 D ETTG++ P++V + D + P A + G R L Sbjct: 9 DYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLVTGITPRLL 68 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFSPLTVGRVW 123 L E + T AG N FD I P++ Sbjct: 69 AERGLCEAEFVTRLHAELALPGTCT-AGYNSLRFDDEISRHALYRNFFDPYAREWQAGNS 127 Query: 124 HHRLADLAAYAAGKLNID-------PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L DL A L+ + G+ H A+ D AT Sbjct: 128 RWDLIDLLRTAYALRPEGIHWPQEEGRVSLRLERLTAANGIEHGQAHDALADVRATIALA 187 Query: 177 DMLRHT 182 +LR Sbjct: 188 RLLRER 193 >UniRef50_Q6ADV7 DNA polymerase III, epsilon subunit n=4 Tax=Micrococcineae RepID=Q6ADV7_LEIXX Length = 192 Score = 77.4 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 44/166 (26%), Gaps = 20/166 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA--AADPKAMEIN 58 M +D ET + A VGL+ V G + + + I+ Sbjct: 1 MTLDFTAIDFET--ANSSAASACSVGLVKVRDGRVVDRSGWLIQPPAGHDEFHEWNVRIH 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + A ++ ++ + N FD ++ Sbjct: 59 GVHPADIAGA----PGWADQLADLVEFCEDDALVAHNAGFDMGVIRAACAA--------- 105 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 R+ L + + E L A A G + H Sbjct: 106 -TRIACPDYRYLCSLQVARRTC--LESYRLPAAALAAGFEDFHHHD 148 >UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=EX1_ECOLI Length = 475 Score = 77.4 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 53/201 (26%), Gaps = 17/201 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEI 57 + D ET G P + + D+ ++ P + + A P A+ I Sbjct: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSP 116 G + + E A + + G N FD + Sbjct: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCIL-GYNNVRFDDEVTRNIFYRNFYDPYA 125 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDP----------TELEGLDAVAERLGVPVVNRHSAI 166 + + R L A L+ + + G+ N H A+ Sbjct: 126 WSWQH-DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 Query: 167 GDAAATAFCFDMLRHTAAAHL 187 D AT L T L Sbjct: 185 ADVYATIAM-AKLVKTRQPRL 204 >UniRef50_C7X7A5 Exonuclease n=4 Tax=Bacteroidales RepID=C7X7A5_9PORP Length = 192 Score = 77.4 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 55/190 (28%), Gaps = 20/190 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +L+ DLETTG+ Y ++ V G + + + +A+ I + Sbjct: 2 KLLFFDLETTGIKYWRNGVHQISGEIVIDGVTKESFNFNVCPHPQCEIEEEALRICNVSK 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNT----------FAGS-NPAFDSTIVARQRVTYS 111 + + + + L G N +FD+ + V Sbjct: 62 EQIQA----YPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNG 117 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDA 169 + + + + + VA LG+ + + H A D Sbjct: 118 DNYFYSWFWVNSIDVM--VLSTQHLMRKRHEMTDFKQETVARALGIQIDSAKLHDASYDI 175 Query: 170 AATAFCFDML 179 T ++ + Sbjct: 176 QLTKKIYNRI 185 >UniRef50_C1BCH2 Putative exonuclease n=1 Tax=Rhodococcus opacus B4 RepID=C1BCH2_RHOOB Length = 240 Score = 77.4 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 26/181 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ET+ LD +EV +++ TG L + P A ++G Sbjct: 41 VILDTETSDLD---GSILEVAVIDAATGAVL-LDTLVDPGD-VQIHPAAAAVHGIS---- 91 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + + N +FD + + + + L W Sbjct: 92 AAQLIGAPDWPTVFSALAAVTADRVVLAYNASFDQSRIVYDCHRHGLDPLHLADTERWGC 151 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAAA 185 + + + E + + H A GDA A + Sbjct: 152 VMV-------KRSQAEGVEK----------NIRLDGAHRACGDAEAARAVLQGIADGPTG 194 Query: 186 H 186 Sbjct: 195 T 195 >UniRef50_A8SRC5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SRC5_9FIRM Length = 227 Score = 77.4 bits (190), Expect = 3e-13, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 51/188 (27%), Gaps = 27/188 (14%) Query: 4 QLIVVDLETTGLDYD--------TALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPK 53 + + VD E +D + + +E+G + +D E F ++ + Sbjct: 10 RYVFVDFEMNLIDSEHKQEKKICKSEIIEIGAVKLDDEYNEIDSFKSYVKPA-YGNMASR 68 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGS--NPAFDSTIVARQRVTY 110 +++ G + L T A G +W N D + + Sbjct: 69 IIKLTGITDEMLE----TAPSYEDAVGRFIEWCADADVIYAWSEN---DLRQLRGETR-- 119 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDA 169 T + I + L LG H A+ DA Sbjct: 120 ---LKQYTHPELERVFAKWQDFQKEYARMIGTSRRISLSDAVFYLGENFQGAEHDALWDA 176 Query: 170 AATAFCFD 177 TA F Sbjct: 177 RNTAEVFK 184 >UniRef50_B2V1C6 Exonuclease, RNase T and DNA polymerase III n=5 Tax=Clostridium RepID=B2V1C6_CLOBA Length = 243 Score = 77.0 bits (189), Expect = 3e-13, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 41/196 (20%) Query: 5 LIVVDLETTGLD--YDTA--------LPVEVGLLNVDTGESL--YFVPHITVEQLAAADP 52 IV DLE + Y +++G + +++ + F I P Sbjct: 3 YIVYDLE---FNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFNRLIKPTVHTEIHP 59 Query: 53 KAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAF--------DSTIVA 104 ++ + +E+ + + + ++ N F D + Sbjct: 60 FIKDLTQITTEMVN----SEKYFSDVYDDFIKFIG-------NKEFTVCIWGTSDIKELL 108 Query: 105 RQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-H 163 + +++ + D+ A+ + GL A E +P+ H Sbjct: 109 KNVKFHNLE------EIYDLRKYIDVQNLASKYIKTQKGTKVGLKAAIEFFNLPIEKEFH 162 Query: 164 SAIGDAAATAFCFDML 179 A DA TA F L Sbjct: 163 DAFNDAYYTAQIFKKL 178 >UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitrosomonas RepID=Q0AEW3_NITEC Length = 486 Score = 77.0 bits (189), Expect = 3e-13, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 53/193 (27%), Gaps = 17/193 (8%) Query: 9 DLETTGLDYDTALPVEVGLLNVDT--GESLY-FVPHITVEQLAAADPKAMEINGYYERGL 65 D ET+G + PV+ L D E V + + P+A + G + Sbjct: 12 DYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLTGITPQMA 71 Query: 66 YREALTEQQTAVAW-GEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFSPLTVGRV 122 L E + ++ G G N FD + P++ Sbjct: 72 ATRGLPEPEFIALIHAQLAQ--PGTCGVGYNTLRFDDEVTRFALYRNFYDPYAREWQSGN 129 Query: 123 WHHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + DLA L+ + G+ + H A+ D AT Sbjct: 130 SRWDVIDLARMTFALRPEGINWPVNGEGKPSFRLEDITAANGLMHDSAHDALSDVRATIA 189 Query: 175 CFDMLRHTAAAHL 187 L L Sbjct: 190 L-ARLLRDRQPRL 201 >UniRef50_UPI0001692E28 hypothetical protein Plarl_02538 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692E28 Length = 119 Score = 77.0 bits (189), Expect = 3e-13, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 9/96 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +++D ETTG++YD+ V++ + +D ++L F + +A I+G Sbjct: 33 KYLILDTETTGIEYDS-EIVDIAI--IDLDKNLIFASLVKPICPIP--EEATMIHGITNE 87 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFD 99 + W +VQ L G T N FD Sbjct: 88 MVADA----PSWLEVWAQVQKLLSGKTLLIYNADFD 119 >UniRef50_A8WA49 Gp61 n=1 Tax=Mycobacterium phage Giles RepID=A8WA49_9CAUD Length = 184 Score = 77.0 bits (189), Expect = 3e-13, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 64/192 (33%), Gaps = 18/192 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHIT--VEQLAAADPKAMEI 57 M L+ +D+ET G+ A EV + + + + L P+A Sbjct: 2 MDAPLLFLDIETLGVTP-GAAIWEVAAARFEGERLVGHMHAFVLHDPNHLDRGLPEAYAR 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 + Y R AL + + GSNP FD + + Sbjct: 61 D-YANRYDDAAALHPETVLATLDRFAE--GRAIVCGSNPRFDMDRLEALAADEGVSAPG- 116 Query: 118 TVGRVWHHRLADLAAYAAGKLN---IDPTELEGLDAVAERLGVPV--VNRHSAIGDAAAT 172 WH+ D+ G L I P D +++ +GV +RH+A GD T Sbjct: 117 -----WHYHPNDIPGMVHGYLLGRGIAPAPPWRTDFMSQCIGVDPRDYDRHTAEGDVWWT 171 Query: 173 AFCFDMLRHTAA 184 + + AA Sbjct: 172 VAMWHAITERAA 183 >UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID=B0BNV2_ACTPJ Length = 514 Score = 76.6 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 61/211 (28%), Gaps = 35/211 (16%) Query: 1 MAKQLIVV--DLETTGLDYDTALPVEVGLLNVDT-----GESLYFVPHITVEQLAAADPK 53 M K L D E+ G+ P + + D+ GE + F T + L P+ Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYL--PSPE 58 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSN-PAFD-----STIVARQ 106 A+ + G + E + E + A ++ + G N +D T Sbjct: 59 AVMVTGITPQQCNAEGVPEPEFAARIH--AEFSQPNTCILGYNNIRYDDEMTRYTFFRNF 116 Query: 107 RVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPT----------ELEGLDAVAERLG 156 Y + + R L A L+ + + G Sbjct: 117 FDPYEYSWKNG------NSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANG 170 Query: 157 VPVVNRHSAIGDAAATAFCFDMLRHTAAAHL 187 + N H A+ D AT L L Sbjct: 171 IAHENAHDAMADVYATIAM-AKLIKQKQPKL 200 >UniRef50_B8HYX4 Exonuclease RNase T and DNA polymerase III n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HYX4_CYAP4 Length = 812 Score = 76.6 bits (188), Expect = 4e-13, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 49/190 (25%), Gaps = 44/190 (23%) Query: 1 MAKQ--LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M + IVVD E G E+ + +D+ +L + + + +N Sbjct: 1 MTDRSDFIVVDTE--GSS----ELSEISI--LDSQGTLIYEAFSEGHP----SNQTIRLN 48 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + + + R + D+ ++ + + Sbjct: 49 -------------LKPLPDIIHDFIEIARNRPIVCHHANHDNEVLKYSFARAGYTWRDFS 95 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-------VNRHSAIGDAAA 171 W K L+ + + L + V H+A DA Sbjct: 96 FVCTW----------ELSKQFFPNAAGYSLEFLCKHLSLKVRGQRFNPAQAHTARYDAEF 145 Query: 172 TAFCFDMLRH 181 T + + Sbjct: 146 THQLYLKILE 155 >UniRef50_C0XQ35 DNA polymerase III epsilon subunit (Exonuclease) n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XQ35_9CORY Length = 189 Score = 76.6 bits (188), Expect = 4e-13, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 51/191 (26%), Gaps = 26/191 (13%) Query: 2 AKQLIVVDLETTG-LDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A + + VD ET L +A +V L+ V + + I+G Sbjct: 15 APEFVTVDFETANRLSPASA--CQVALIKVAGDAVVDQLVTYLRPPEEYIRFDFTHIHGI 72 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFD---STIVARQRVTYSMPFSPL 117 + +V + N FD + T + P Sbjct: 73 ERDTVEH----SPTWYDIADDVHALVGELPVWAHNAPFDAAVWRALDAYYFTGTFPAQFY 128 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFC 175 R + I L VA P + H+A DA A A Sbjct: 129 CTCRT-------------ARRLIPGLRDYRLPTVAA-YCAPTFDLVHHTADSDALACAHI 174 Query: 176 FDMLRHTAAAH 186 R +++ H Sbjct: 175 VGKFRRSSSMH 185 >UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteobacteria RepID=Q1QT40_CHRSD Length = 495 Score = 76.6 bits (188), Expect = 4e-13, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 54/202 (26%), Gaps = 31/202 (15%) Query: 9 DLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 D ET G D P + + D + P+A I G + Sbjct: 14 DYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHPQACLITGITPQAA 73 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFD---------STIVA---RQRVTYSM 112 R L E + A + G N FD + R+ + Sbjct: 74 RRRGLAEIEFAARIHAEMSVPGTCSL-GYNTLRFDDEVSRHLFYRNFIDPYSREWQNGNS 132 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + + V R +H D + D L+ + G+ H A+ D AT Sbjct: 133 RWDLIDVVRTYHALRPDGIEWPTR---EDGAPSFRLEDLTAANGIEHAGAHDALADVRAT 189 Query: 173 -----------AFCFDMLRHTA 183 A F+ L Sbjct: 190 IELARLLKARNAQLFEYLLKLR 211 >UniRef50_B9RLV7 Exonuclease, putative n=1 Tax=Ricinus communis RepID=B9RLV7_RICCO Length = 448 Score = 76.2 bits (187), Expect = 5e-13, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 24/186 (12%) Query: 1 MAKQLIVVDLETTGLDYDTAL---PVEVGLLNVDTGESLYFVPHITVEQLAA-----ADP 52 ++ DLETT +E G + V + + T Q AA Sbjct: 10 QRSEIAFFDLETT--LPGECEGFAILEFGAILVCPRTLVELHTYATFVQPAADPSLIFSS 67 Query: 53 KAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYS 111 + NG + ++ + V + L G +AG N FDS + Sbjct: 68 SFLRSNGITYDNI----VSAPTFSDIADTVYEILNGRLWAGHNVQKFDSVKIREAFAEIG 123 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 + D K + ++A G+ H ++ D Sbjct: 124 RQPPVP-------KGVIDTWELLTHKFGR-RAGDMKMASLATYFGLG-KQTHRSLDDVRM 174 Query: 172 TAFCFD 177 Sbjct: 175 NVDVLK 180 >UniRef50_D2Q5V7 DnaQ DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium dentium RepID=D2Q5V7_9BIFI Length = 439 Score = 76.2 bits (187), Expect = 5e-13, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 10/156 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGL--LNVDTGESLYFVPHIT----VEQLAAADPKAMEI 57 L+ +DLETTG + ++ G ++ TG + H +L + Sbjct: 225 TLVGIDLETTGTSPNQDYIIDAGWELYDMATGRASDAQRHTYGLSRQRELRGIGRDITSL 284 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + ++ A A + L G N F+ + Y+ Sbjct: 285 TGITTADVAGHVPFQED-ADAQRTMMTALDGRIMVAHNARFEQFFLIGNCEGYAEALRDG 343 Query: 118 TVGRVWHHRLADLAAYAAG---KLNIDPTELEGLDA 150 + + ++A + A +L+ LD Sbjct: 344 RIRIIDSMKVAHHSEDARAQGFRLDDYARRNHALDD 379 >UniRef50_A9HQT1 Exonuclease n=3 Tax=Proteobacteria RepID=A9HQT1_9RHOB Length = 287 Score = 76.2 bits (187), Expect = 5e-13, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 58/175 (33%), Gaps = 17/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D+ET + + A VG+ + GE L + ++ D + I+G E Sbjct: 2 KFVAIDVET--ANANMASICSVGVAVFENGE-LAQEWYSLIDPRDYFDGMNVSIHGIDET 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + A ++ L N FD + + +S+P Sbjct: 59 QV----VGAPTFAEITEQLGAMLSDNVVVTH-THFDRVAMHQAARHWSVPPVT------- 106 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 D A A GL V + +G H+A+ DA A+ Sbjct: 107 -CTWLDSARVARRTWEECAQRGYGLANVCKLIG-HTFEHHNALEDAKASGVVLLA 159 >UniRef50_B6FR49 Putative uncharacterized protein n=2 Tax=Clostridium nexile DSM 1787 RepID=B6FR49_9CLOT Length = 190 Score = 75.8 bits (186), Expect = 6e-13, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 50/184 (27%), Gaps = 27/184 (14%) Query: 6 IVVDLETTGLDYD----TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 IV DLETTGL + + + +D S+ F + E + KA ING Sbjct: 17 IVYDLETTGLYPFSPELGDEILSMCI--MDLQGSVLFEHYFKPEHTESWS-KAAAINGIT 73 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 + E + D N FD + + + Sbjct: 74 PEKVENEKPFSFYRDEV-QRIFDAAD--ILITYNGIHFDDSFLEAA-----------GIE 119 Query: 121 RVWHHRLADLAAYAAGKLNIDPTEL----EGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + +A D L A H A D AT C+ Sbjct: 120 IPDVMQFDVMLKFAWLMHEWDDYHKSWRWHKLINCAAYYNYE-FPAHDATEDVRATLHCY 178 Query: 177 DMLR 180 + Sbjct: 179 TEMM 182 >UniRef50_B1ZD08 Exonuclease RNase T and DNA polymerase III n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZD08_METPB Length = 187 Score = 75.8 bits (186), Expect = 6e-13, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 19/187 (10%) Query: 8 VDLETTGL--------DYDTALPVEVGL-LNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 D+ET+GL D V++G ++ ++ + P+A ++ Sbjct: 5 FDVETSGLIIRDRPLDDPAQPRMVQLGFTVHTPDRRVVHSYSALIRPDGWEITPEAQRVH 64 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G+ R + VA ++ L+ N A D+ I R+ Sbjct: 65 GFSTEDCGRWGVDS---KVALLDLVSALKTARIAVAHNFANDAAIAQREL-----NILKA 116 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCF 176 RL + G + + L + + L G H A+GDA ATA CF Sbjct: 117 ADEGFMRARLRRVCTMRTGAALVQDGKWPTLGRLHKLLAGHEHEGAHDALGDAQATARCF 176 Query: 177 DMLRHTA 183 L Sbjct: 177 WGLVDRK 183 >UniRef50_Q2JLB6 Exonuclease family protein n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JLB6_SYNJB Length = 783 Score = 75.8 bits (186), Expect = 7e-13, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 51/155 (32%), Gaps = 19/155 (12%) Query: 35 SLYFVPHITVEQLAAADPKAMEI-NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAG 93 + + +E++A D I + Y + + A +++ +G T Sbjct: 5 VIDTEGNANLEEIALIDSSGKLIYHAYTQEYSPHHPQPKP-LAQIVADLRRLAQGKTLVF 63 Query: 94 SNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAE 153 + D I+ + + + P + W +A K L+ +++ Sbjct: 64 HHADHDLKILKQAFDQVNQDWLPNPIFCTW----------SAAKQCFPNLAGYSLEYLSK 113 Query: 154 RLGVPVVN-------RHSAIGDAAATAFCFDMLRH 181 LG+ + + H A DA T + L H Sbjct: 114 HLGIQLESGYFNSKLAHDASYDALFTYHLYRHLTH 148 >UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepID=Q4K7B4_PSEF5 Length = 497 Score = 75.5 bits (185), Expect = 8e-13, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 49/191 (25%), Gaps = 14/191 (7%) Query: 9 DLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 D ETTG++ P++V + D + P A I G L Sbjct: 30 DYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGITPGRL 89 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFSPLTVGRVW 123 + L E E G N FD + P++ G Sbjct: 90 AEQGLGEADFMTRVHEQLARPGTCG-VGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNS 148 Query: 124 HHRLADLAAYAAGKLNID-------PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L D+ A L+ + G+ H A+ D AT Sbjct: 149 RWDLIDVVRTAYALRPQGIVWPEEQGQVSLKLERLTAANGIDHGQAHDALSDVRATIAL- 207 Query: 177 DMLRHTAAAHL 187 L L Sbjct: 208 ARLVRDKQPRL 218 >UniRef50_C6WRT0 Exonuclease RNase T and DNA polymerase III n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WRT0_ACTMD Length = 372 Score = 75.5 bits (185), Expect = 9e-13, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 53/183 (28%), Gaps = 23/183 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +V+D E T T +E+ ++ D L + + A +P A +G + L Sbjct: 94 VVLDTELTDF---TGRVIEIAVVATDGATLLTS---LVDPEGAQINPYAQRAHGITAQML 147 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTVGRVWH 124 W ++ LRG N FD T + + P + W Sbjct: 148 TGA----PTLEQLWPKLDHVLRGKRVIAWNAPFDLTRLRAEHRHLFGDADLPDWLTGPWL 203 Query: 125 HRLADLAAYAAGKLNIDPT-ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + AA+ + L H A GD A + TA Sbjct: 204 CAMRKHAAWVGDRNTKGGGFRNHRL-----------EGGHRAEGDCLAALAWIKRMADTA 252 Query: 184 AAH 186 Sbjct: 253 PGT 255 >UniRef50_C7RL54 Exonuclease RNase T and DNA polymerase III n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RL54_9PROT Length = 236 Score = 75.5 bits (185), Expect = 9e-13, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 48/179 (26%), Gaps = 21/179 (11%) Query: 4 QLIVVDLETT--GLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME--ING 59 + +VVD+ETT G D V +G L V G + +AD +A Sbjct: 45 RYVVVDVETTVIGGDA--DRLVSLGALAVVDGLIDFKDVFQACLANESADGEAASDGRPQ 102 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + A + + +F Sbjct: 103 IETARIAA--------VDAMLAFLRFAGKAPLISFHASF-------AAQQVDRAMGECLG 147 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + ++ GLD + + RH + DA ATA + Sbjct: 148 VALRQPWIDLAWVMSDLFRDVGDDSQGGLDGWLAHFDIESIKRHDVVSDAYATAKLLQI 206 >UniRef50_D1AX10 Exonuclease RNase T and DNA polymerase III n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AX10_STRM9 Length = 426 Score = 75.5 bits (185), Expect = 9e-13, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 65/184 (35%), Gaps = 21/184 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I++DLETTG+ + +++ ++++ + F + + +A +I+ + L Sbjct: 251 IILDLETTGIR-ENDEIIQLSIIDIKGEKL--FNEYFKPINVTEW-EEAYKIHNIGKEML 306 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + LT ++ + D + G FD ++ R V + Sbjct: 307 EDK-LTIEEYREKIQNILD--STDYMIGYGIDFDYKLLQR---------QGFNVEHIKKV 354 Query: 126 RLADLAAYAAGK-LNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA----FCFDMLR 180 ++D Y K N + L + G H+++ D AT + + Sbjct: 355 DVSDYFKYIYRKIFNDPKLKRPKLIECSNYYGFKDRGFHNSLTDCFATLVSYKGIYKYML 414 Query: 181 HTAA 184 + Sbjct: 415 EELS 418 Score = 72.8 bits (178), Expect = 5e-12, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 59/179 (32%), Gaps = 30/179 (16%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I++D+ETTG+ +++ ++++ + F ++ + + D A +I+ + Sbjct: 43 IILDVETTGIR-KNDEILQLSIIDIMGN--VVFDKYMKPKYVNDWD-DAFKIHNISHEMV 98 Query: 66 YREALT---EQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + ++ + G D + R + Sbjct: 99 KNKKYISYYKKDIEKILK------KHKLIIGYEVNSDIAFLRRA------------GIEL 140 Query: 123 WHHRLADLAAYAAGKL----NIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + D+A + ID L A+ + N H A+ D AT CF Sbjct: 141 KSNIVLDIAYLFSLLFENENLIDRKIRPSLLDAAKFYNLD-FNAHDALSDCIATLHCFK 198 >UniRef50_UPI0001B530B7 YacC n=1 Tax=Escherichia sp. 4_1_40B RepID=UPI0001B530B7 Length = 293 Score = 75.1 bits (184), Expect = 1e-12, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 9/118 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTGLD +TA +E+GL D + F + A +A ++G E+ Sbjct: 105 LFLDTETTGLD-NTAKALEIGLT--DATGQVVFETRLKPT--VAIGAQAAAVHGISEQ-- 157 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 +++ + N FD I+ + +S P L V+ Sbjct: 158 --ALCGAPSWTDVARQLRHAIGDRPVIIFNARFDIRILKQTAAAHSDPADWLEELTVY 213 >UniRef50_B9N4N5 Predicted protein n=4 Tax=Magnoliophyta RepID=B9N4N5_POPTR Length = 147 Score = 75.1 bits (184), Expect = 1e-12, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 19/123 (15%) Query: 70 LTEQQTAVAWGEVQDWLRGN-------TFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++ F N FD + + + Sbjct: 5 PDVPRMEELIPILLQYVKSRQKPGGYVMFVAHNARNFDVPFLVNEFGRHHFEIPQ----- 59 Query: 122 VWHHRLADLAAYAAGKLNIDPTE---LEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFD 177 + D A L ++ + L+A+ ++ + V H A+ D A + Sbjct: 60 --NWLFVDTRPLAREVLKMEGLKVTSGTSLEALCKKYNIQFVGKAHRAMADVTALSLVLQ 117 Query: 178 MLR 180 L Sbjct: 118 RLT 120 >UniRef50_Q1NYP0 DNA polymerase III alpha subunit (Fragment) n=4 Tax=cellular organisms RepID=Q1NYP0_9FLAO Length = 511 Score = 74.7 bits (183), Expect = 1e-12, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 62/193 (32%), Gaps = 22/193 (11%) Query: 5 LIVVDLETTGLDYDTA------------LPVEVGLLNVDTG-ESLYFVPHITVEQLAAAD 51 I+ D ETTGL V++ + +D + + +I + Sbjct: 2 YIIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIP 61 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTY 110 + +I+G + + + + E ++ + G N FD IV + + Sbjct: 62 FNSTKIHGISTKYAIEKGI---KINFVLEEFNLIIKKSNFLIGHNVFFDIKIVCAEFIRI 118 Query: 111 SMPFSPLTVGRVWHHRL-ADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 + S + + + A G + + L + ++L H + D Sbjct: 119 NKKISFFKKKIIDTKEISINYCAIKMG----EKFKWPTLTELYKKLFNDTFIAHDSKSDV 174 Query: 170 AATAFCFDMLRHT 182 AT CF L Sbjct: 175 LATTKCFFELLRI 187 >UniRef50_C6CTA0 Exonuclease RNase T and DNA polymerase III n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTA0_PAESJ Length = 264 Score = 74.7 bits (183), Expect = 1e-12, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 23/188 (12%) Query: 4 QLIVVDLETTGLDYDTA---LPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEIN 58 I++D+E G + + +E+G + ++ ++ F I + + + Sbjct: 2 DYIILDIEFNGRKFASDLPMEVIEIGAVRLNADLQQTDIFSSLIKPVYFSKLNSFIKKKT 61 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ----RVTYSMPF 114 G + + + GE +WL F ++ Sbjct: 62 GIPQEEID----IAPKFPRVIGEFINWLDRGE------PF---MLFTWGGEDLKRIVYDT 108 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATA 173 + + + + T ++A L + N H A+ DA TA Sbjct: 109 RMHKLDDAFWLSMDTFDLLKGYLRYKNITNDVSVEAALADLNLVFEGNAHRALDDAIMTA 168 Query: 174 FCFDMLRH 181 F + Sbjct: 169 DVFRAIFE 176 >UniRef50_C6C8G0 Exonuclease RNase T and DNA polymerase III n=2 Tax=Enterobacteriaceae RepID=C6C8G0_DICDC Length = 181 Score = 74.7 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 17/186 (9%) Query: 1 MAKQ-LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M+ + + VD+ET+G + +G V E + DP+A+ + G Sbjct: 1 MSDELYVSVDVETSGPVPGIYSLLSIGACVVS--EPTQSIYLELQPDGLKHDPEAVAVTG 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWL----RGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 L E L Q + + + + F G N FD + + YS Sbjct: 59 LDLTKLESEGLPPQVAMLKLEQWLTQVCPAEQKVIFVGLNAPFDWSFINYYFHKYSGMNP 118 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG-VPVVNRHSAIGDAAATAF 174 D+ AY G E + + R + V H+A+ DA Sbjct: 119 FGFTA-------IDMKAYYMGLTGCLWKETKS-SQMTARFNPISV-PSHNALDDARFQGE 169 Query: 175 CFDMLR 180 F ++ Sbjct: 170 LFALML 175 >UniRef50_UPI0001B535E1 exonuclease n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B535E1 Length = 470 Score = 74.3 bits (182), Expect = 2e-12, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 51/184 (27%), Gaps = 22/184 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D++TTGL T +EV + + V A+ + Sbjct: 22 EFTALDVKTTGLH--TGRVLEVAAIRFRGDGTFLGEFATVVAADASRRNP----HRITAA 75 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + G + + +G D + V + + R+ Sbjct: 76 ELADA----PALSGILGRLFELCQGAVLVAH----DLSSVEGLLTEIGQ--LGVRLPRLP 125 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L D A A P L +A G+ + A A A A L T Sbjct: 126 AISLKDTAQAAL------PLPNYRLATIARAFGIEDFPGYLAEPAARACAQAMLALVGTH 179 Query: 184 AAHL 187 L Sbjct: 180 GLRL 183 >UniRef50_B3W7U1 DNA polymerase III, alpha subunit (Gram-positive type) n=8 Tax=Lactobacillus RepID=B3W7U1_LACCB Length = 478 Score = 74.3 bits (182), Expect = 2e-12, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 55/180 (30%), Gaps = 21/180 (11%) Query: 4 QLIVVDLETTGLDYDTALP--VEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 IV+D E D E+ LL V + F + + P +++I G Sbjct: 274 DYIVIDTE---FVADRNQLDLTEISLLRVRHHQVDGAFDIFTQLPEDHHVMPFSVKITGI 330 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + A ++ + G + D + + V Sbjct: 331 TDDLLSQYGQPLPLAKAAVEQLL---KHELVVGFALSNDLR-----ALRAGLNVDITPVQ 382 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D+AA A I L E LGV + H+A+ DA T + L Sbjct: 383 AF------DVAALARKTFGIGKKHTPSLQHYKEALGVDL-PSHTALSDAQTTMALLEHLI 435 >UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KPJ8_9GAMM Length = 482 Score = 74.3 bits (182), Expect = 2e-12, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 53/188 (28%), Gaps = 16/188 (8%) Query: 9 DLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEINGYYERGL 65 D ET G+D P + L D + P + + P A I G + Sbjct: 11 DYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDACLITGITPQAA 70 Query: 66 YREALTEQQT-AVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVT-YSMPFSPLTVGRV 122 + E E RG G N FD T+ P++ Sbjct: 71 LAAGVPEADFIKAILHEFMQ--RGTCAVGYNSLRFDDTVTRATLYRNLRDPYAREYGDGR 128 Query: 123 WHHRLADLAAYAAGKLNI--------DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 L D+ A D L+ + E G+ H A+ D AT Sbjct: 129 SRWDLIDIVRTAYALRPEGLIWPERDDGLPSFRLEDLCEANGLAQGRAHDALVDVQATIA 188 Query: 175 CFDMLRHT 182 +L+ Sbjct: 189 LARLLKER 196 >UniRef50_A5I455 Exonuclease family protein n=11 Tax=Clostridium RepID=A5I455_CLOBH Length = 253 Score = 74.3 bits (182), Expect = 2e-12, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%) Query: 5 LIVVDLETTGLDYDTA---------LPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPK 53 I+ DLE + +++G + ++ F + E + +P Sbjct: 3 YIIFDLE---FNQGYNNQIEIKCPFEIIQIGAIKLNENFTTIDTFNALVKPEIYSDLNPF 59 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAF------DSTIVARQ 106 + L + + + ++L + N F D ++ Sbjct: 60 VKNLTNLTMDSLNKAK----SFREVYKDFLEFLNKDR-----NI-FCIWGMTDM----KE 105 Query: 107 RVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-VVNRHSA 165 ++ + L + + + AY LN + GL E + + H+A Sbjct: 106 LFR-NIVYYQLDTESMPKEYIN-VQAYTGKYLNYPKSINVGLSNAVELFHITKNNDFHNA 163 Query: 166 IGDAAATAFCFDML 179 DA TA F + Sbjct: 164 FNDAFYTAEVFKKI 177 >UniRef50_C0ZJM1 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJM1_BREBN Length = 239 Score = 73.9 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 57/190 (30%), Gaps = 36/190 (18%) Query: 5 LIVVDLETTGLDYDTA---LPVEVGLLNVDTG----ESLYFVPHITVEQLAAADPKAMEI 57 +IV DLETT L Y +E+G V G E F + + + Sbjct: 3 IIVFDLETT-LTYQRDKIPEIIEIGAAKVVPGKNGVEVDTFQRYTFPAIERRISERTRKF 61 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAF--------DSTIVARQRVT 109 G + T A+ E W+ + + D ++ Sbjct: 62 IGLDKEN----MPTFIPFRRAFAEFLKWIGND------SEYYLCTWGQDDKRLMIEHCAR 111 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGD 168 + + F+ W D+ L + + L + G+ R HSA+ D Sbjct: 112 FGLDFN-------WMRNYNDIQP--PISLLLADRKQMSLKEAIDTAGIIQEGRLHSALVD 162 Query: 169 AAATAFCFDM 178 A TA Sbjct: 163 AIHTAHLLIK 172 >UniRef50_C6Q2Y2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q2Y2_9CLOT Length = 196 Score = 73.9 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 58/198 (29%), Gaps = 30/198 (15%) Query: 6 IVVDLETTGLDYDTALPVEVG-LLNVDTGESLYFVPHIT--VEQLAAADPKAMEINGYYE 62 I +D ETTGL+ +++ + V + +P A ++G+ Sbjct: 4 IFLDTETTGLEPGQ--IIQLTYCVCDINSRGEEKVCFAKNFFFDVDYVEPSAEAVHGFSV 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS----------- 111 L Q+ A EV L G F N FD V + + Sbjct: 62 ERLKT-LSMGQEFKDAASEVAADLEGGIFIAHNVRFDQKFVTAEFDRLNSIHWNPAKFFC 120 Query: 112 -------MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + GR+ + RL + + N + L V+ H Sbjct: 121 TMQYFKSKVNAKTKTGRLKNPRLEETMDFLRVDQNKVLQGAKKL------FNCDDVDFHD 174 Query: 165 AIGDAAATAFCFDMLRHT 182 A D A C+ R Sbjct: 175 ARYDVAGLVSCYYRARKL 192 >UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NSM4_9RHOB Length = 469 Score = 73.9 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 57/194 (29%), Gaps = 16/194 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGYYE 62 DLET+G P++ + D E + P A+ + G Sbjct: 2 FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEVERIDIRCRLSPHILPAPWALAVTGVSP 61 Query: 63 RGLYR-EALTEQQTAVAWGEVQDWLRGNTFAGS-NPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + + + T+ G N AFD ++ + ++ + Sbjct: 62 GMLSNPNLPSAFEFSQEVSSLIHRWGPATWTGYNNIAFDEQMLRQMFYQ-NLHPNLYLTQ 120 Query: 121 RVWHHRLADLAA------YAAGKLNIDPTEL----EGLDAVAERLGVPVVNRHSAIGDAA 170 + R+ + A L E LD +A G N H A+ D Sbjct: 121 MDGNDRMDIMKLVYATWVLANDALTWPTDEAGKITFKLDQLAPANGFVSNNFHDALADVE 180 Query: 171 ATAFCFDMLRHTAA 184 AT L A Sbjct: 181 ATINI-AKLIRDRA 193 >UniRef50_A6QIL2 Phage exonuclease n=19 Tax=root RepID=A6QIL2_STAAE Length = 310 Score = 73.9 bits (181), Expect = 3e-12, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 18/179 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + V+D ET ++ P EV + + + + K +I+ E Sbjct: 5 DIAVLDFET--MNEHMNSPCEVAVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIPED 62 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + + E+ L+ + N FD +++ Y +P Sbjct: 63 VI----LKAPKYPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDS 118 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + L+ + + HSA D A + L Sbjct: 119 IN-----------IFRSFHAISSFKLENLCSLYDIDKEKLHSAKFDVLALSKMLISLAK 166 >UniRef50_A6M0I3 Exonuclease, RNase T and DNA polymerase III n=3 Tax=Clostridium RepID=A6M0I3_CLOB8 Length = 255 Score = 73.9 bits (181), Expect = 3e-12, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 25/168 (14%) Query: 21 LPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVA 78 +++G + +D E F + P + Y + + + Sbjct: 40 EIIQIGAIKLDNNFQEVSTFNSLVKPTLYKTIHPYVENLTKIT----YDKVSSCKNFINV 95 Query: 79 WGEVQDWLRGN-TF-----AGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAA 132 +++ + G D + R Y++ S ++ + D+ Sbjct: 96 HKAFLEFIGDDDVLLCVWGVG-----DIKELYRNLGFYNLSTSYIS-------KYIDIQK 143 Query: 133 YAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDML 179 YA+ L GL E L +P+ + H A+ DA T+ F + Sbjct: 144 YASKYLKAPKNSRIGLRNAVEILNIPIYSEFHDALNDAYYTSEIFKRI 191 >UniRef50_Q1Q8L3 Exodeoxyribonuclease X n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1Q8L3_PSYCK Length = 242 Score = 73.5 bits (180), Expect = 3e-12, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 30/185 (16%) Query: 1 MAKQLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M +++D ET D P++V +NV TG F + P + ++G Sbjct: 7 MVDTALIIDTET---DQGRDPRPIQVATINVATG----FEWMKYFNSGRSISPVVIRVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E + E G N FD ++ + Sbjct: 60 ITDDDVAGLERFELEQFE-LPEY--------LIGHNVRFDWRVIGS------PSAKLICT 104 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ + +AY K A R+ + H A+GDA + Sbjct: 105 VRLARVAFPEWSAYGQSKCIEQLLGKGE----ASRMTI---AAHDALGDARMCYLLYQAC 157 Query: 180 RHTAA 184 Sbjct: 158 CERLE 162 >UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae RepID=Q2P315_XANOM Length = 481 Score = 73.5 bits (180), Expect = 4e-12, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 50/185 (27%), Gaps = 14/185 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTG-ESLY--FVPHITVEQLAAADPKAMEI 57 M + DLET G D + + D + + P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFS 115 + RE +TE + E + T G N FD V P+ Sbjct: 61 TAITPQHALREGVTEAEAFARIAEQMSRPQTCTL-GYNSIRFDDEFVRCGLFRNFYDPYE 119 Query: 116 PLTVGRVWHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIG 167 G L D+ D L+ +A V + H A+ Sbjct: 120 REWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALS 179 Query: 168 DAAAT 172 D AT Sbjct: 180 DVYAT 184 >UniRef50_A7VSN5 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VSN5_9CLOT Length = 293 Score = 73.5 bits (180), Expect = 4e-12, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 57/189 (30%), Gaps = 27/189 (14%) Query: 4 QLIVVDLETTGLDYDT-----ALPVEVGLLNVDTGESLYFVPHITVEQLA--AADPKAME 56 + +++DLE G +E G + V+ + + V+ K Sbjct: 2 EFVILDLEWNGTYSKRKSGFFNEIIEFGAVKVNDRLCVEDTFSVVVKPQIGKKLSSKVKN 61 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTI----VARQRVTYSM 112 + L A + + +L T + + Sbjct: 62 LTNISSEELGLGV----TYTRAVSKFKKFLGNAVL--------MTWGTSDILALMENHQY 109 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAA 170 + + + + +L ++ ++ + + GL A+ LG+ V H A+ D+ Sbjct: 110 YWGTDRLDYIEGYV--NLQSFCERRVYYERGKQMGLSTAAQLLGIDVQGMEHHRALDDSL 167 Query: 171 ATAFCFDML 179 CF L Sbjct: 168 LALACFRRL 176 >UniRef50_Q28W63 Exonuclease n=5 Tax=Rhodobacterales RepID=Q28W63_JANSC Length = 196 Score = 73.2 bits (179), Expect = 4e-12, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 16/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I VD+ET + ++GL V + +SL V ++ + P +++G Sbjct: 16 RFIAVDVET--ANNAQGSICQIGLCCVGSDDSLNTVS-TLIDPEQSFSPFNTDLHGISAE 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A+ + L + FD Y +P V Sbjct: 73 TVNGA----PTFPQAYASLYPVLNAHRLVQH-SRFDEAAFTAACARYDVPM-------VT 120 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 H + + GL ++ + LG+ + H A DA A+A Sbjct: 121 SHWTDSVKIARQAWPELKGAGGHGLASLKKALGLS-FHHHDAGEDARASATVILR 174 >UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E98F Length = 488 Score = 73.2 bits (179), Expect = 4e-12, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 23/191 (12%) Query: 1 MAKQ---LIVVDLETTGLDYDTALPVEVGLLNVDT-----GESLYFVPHITVEQLAAADP 52 M++ + D ET G+ P + + D E + I ++ L P Sbjct: 1 MSQPPASFLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYL--PHP 58 Query: 53 KAMEINGYYERGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSN-PAFD---------ST 101 +A+ + G + E E + ++ G N FD Sbjct: 59 QAVLVTGITPQMTLAEGEYEYTFMQKIHQ--AMIQPNTCVVGYNSIKFDDEVSRFSFFRN 116 Query: 102 IVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 + + Y S + + A L + L+ + + G+ N Sbjct: 117 FMDPYQREYLHGNSRWDLINLVRACYALRPEGIKWPLGDNGLVSFKLERLTQENGISHTN 176 Query: 162 RHSAIGDAAAT 172 H A+ D AT Sbjct: 177 AHDALSDVHAT 187 >UniRef50_C8NDE4 DNA polymerase III, epsilon subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NDE4_9GAMM Length = 141 Score = 73.2 bits (179), Expect = 4e-12, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 9/86 (10%) Query: 97 AFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG 156 FD + R+ + + R+ L + I LD++ + G Sbjct: 2 PFDQSFFNREFKLAGLKYKLEDRFRL-------LDTLDLARKKISGISRFSLDSLCKYYG 54 Query: 157 VPVVNR--HSAIGDAAATAFCFDMLR 180 + NR H A+ D+ A + L Sbjct: 55 IDNSNRTLHGALLDSQLLAEVYLKLT 80 >UniRef50_B5W5I7 Exonuclease RNase T and DNA polymerase III n=2 Tax=Arthrospira RepID=B5W5I7_SPIMA Length = 853 Score = 73.2 bits (179), Expect = 5e-12, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 50/190 (26%), Gaps = 42/190 (22%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D E EV ++ D ++ + + +N Sbjct: 13 FIVLDTE------GKNSLTEVAMV--DNQGAICYQAFVAKNHP----EPTFRLN------ 54 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 +V + + D I+ R ++P+ + Sbjct: 55 -------IATLLDIVKQVDNLCHNQVIICHHAEHDQRILERSFEQVAIPYP--------N 99 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-------RHSAIGDAAATAFCFD 177 ++ A +L GL + + L + + H A DA T + Sbjct: 100 YQFICTCKLAKQQL--PNLPDYGLSYLCKTLDLRLNGDRFDDRYAHRASYDAQFTYKLYR 157 Query: 178 MLRHTAAAHL 187 L + + Sbjct: 158 YLNPLKSPKM 167 >UniRef50_A6W317 Exonuclease RNase T and DNA polymerase III n=11 Tax=Proteobacteria RepID=A6W317_MARMS Length = 187 Score = 72.8 bits (178), Expect = 5e-12, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 22/185 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I VD+E +G + +G V + + F ++ P A+E+ G Sbjct: 8 FISVDIEASGPIPGKYSMLSIGAC-VTSDPLIQFTCYLKPI-SDEYIPAALEVTGLSLEQ 65 Query: 65 LYREALTEQQTAVAWGEVQDWLR-------GNTFAGSNPAFDSTIVARQRV-TYSMPFSP 116 L R+ L + A + + W+ G N +FD + + Sbjct: 66 LNRDGL---EPIEAMTQFKTWVESLIEKDENVVLVGFNASFDWSFINYYFHYFLGENPFG 122 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + + + + ++ ++ H A+ DA A F Sbjct: 123 IAALDIKSMYFGASDSSWRSTRSSEIEKVVKPES---------AGDHDALHDAIYQAELF 173 Query: 177 DMLRH 181 ++R Sbjct: 174 SLIRK 178 >UniRef50_Q0G0B0 Exodeoxyribonuclease X n=2 Tax=Aurantimonadaceae RepID=Q0G0B0_9RHIZ Length = 266 Score = 72.8 bits (178), Expect = 6e-12, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 39/191 (20%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVD--TGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ET GL + +E+G +++D TG + A A ++ + Sbjct: 25 VIDTETAGLRLEEDAVIEIGSVDLDLVTGAIFNPMQTFCDPGGAVISDGARRVHQITDEM 84 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + A N S L + W Sbjct: 85 L----VGAPPFSDAVKPF------------NTE------TYAAQRADFDRSRLRLTGRW- 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---------NRHSAIGDAAATAFC 175 L + GL ++ + + + + + H A+ DA TA Sbjct: 122 -----LCTHKLALRAFPNVRAHGLQSLVKYVPLDLSSVDQMLAGLHPHRALFDAVCTAVL 176 Query: 176 FDMLRHTAAAH 186 + H Sbjct: 177 LRRIAEELTPH 187 >UniRef50_B5K1P1 Exonuclease n=4 Tax=Octadecabacter antarcticus RepID=B5K1P1_9RHOB Length = 206 Score = 72.8 bits (178), Expect = 6e-12, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 16/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I +D+ET G ++GL V ++ + ++ + E++G Sbjct: 20 RFIALDVETAGKTIGG--ICQIGLCFVSNTGAVQTYS-VLIDPEEPFEQFNTELHGISAD 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + + D L + FD + Y +P + Sbjct: 77 TVAGAGI----FPMVYAALFDLLNTHNLIQH-STFDEKALTSDCARYGLPM-------IT 124 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 H + + GL + + LG+ + H A DA A+A Sbjct: 125 SHWTNSVTVARQAWPALKGAGGHGLANLKKHLGLE-FHHHDAGEDARASATVILR 178 >UniRef50_D0AAH2 Exonuclease, putative n=2 Tax=Trypanosoma brucei RepID=D0AAH2_TRYBG Length = 366 Score = 72.4 bits (177), Expect = 7e-12, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 11/95 (11%) Query: 90 TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLD 149 N AFD + + + VW + + + L Sbjct: 264 PVIAHNAAFDRNFLYQSALRNGWE-------VVWDKQSPLTCTMSMFRALYPECPT-NLT 315 Query: 150 AVAERLGVP---VVNRHSAIGDAAATAFCFDMLRH 181 G+ +RH A+ DA F L Sbjct: 316 KACSLAGIDAAGREDRHDALQDAQLCGHLFIYLTE 350 Score = 64.3 bits (156), Expect = 2e-09, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 11/90 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV------DTGESLYFVPHITVEQL-AAADPKAMEIN 58 + +D+ETTG+ + + ++ + L + + A ++ Sbjct: 104 VCIDVETTGIAPTKDEIISIAVVELLFGAAGHNQWVLSGRSFHRLVKPTKKVSSSAYRVH 163 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRG 88 + L R + A ++ +L Sbjct: 164 KLTSKVLER----QPPFAAILPDLAAFLSD 189 >UniRef50_A9HKJ8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HKJ8_GLUDA Length = 269 Score = 72.4 bits (177), Expect = 8e-12, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 50/195 (25%), Gaps = 34/195 (17%) Query: 4 QLI-VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV-----EQLAAADPKAMEI 57 + V+DLET+G + VE+G +V + P+ M I Sbjct: 14 PFVRVIDLETSGRNAADGGIVEIGWQDVARDADGTWALAGPPGARLTHPGGPITPQTMAI 73 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNT--FAGSNPAFDSTIVARQRVTYSMPFS 115 + + + A ++ A +F+ + Sbjct: 74 HHITDAHVRDA----PPFAEIAPDILH-PADRPAAMAAHRASFEQGWIR------GSLPP 122 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEG---LDAVAERLGVPV---VNRHSAIGDA 169 LT G W + Y L G+ H A DA Sbjct: 123 ALTTGLHW------ICTYKCALRLWPDEPGHSNQGLRHSRRPAGLERALGDPPHRAGPDA 176 Query: 170 AATAFCFDMLRHTAA 184 TA LR A Sbjct: 177 YVTA---HHLRDMLA 188 >UniRef50_C1SHC8 DNA polymerase III, alpha subunit (Gram-positive type) n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHC8_9BACT Length = 164 Score = 72.0 bits (176), Expect = 8e-12, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 16/161 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 MA++ + +D++T+G+ +E+ L D Y + H ++ + EI G Sbjct: 1 MAQK-VYIDMKTSGISPSKGEIIEICALKPDVDLMTYEMFHAYIKINSDISEIFTEIEGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L ++ A ++ G P +D T + + F+ + Sbjct: 60 SKEMLDEHGVS---IEDAIARFDMFVTGCEIVSFVPEYDLTFLKDAYSKCGLIFNHKVIN 116 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 V + + LD ++ L VP Sbjct: 117 AVRTGTKETIPT------------GKSLDEISNYLKVPHHG 145 >UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJV3_9GAMM Length = 517 Score = 71.6 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 20/193 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEINGYY 61 + D ET G + + D + DP A++I Sbjct: 11 YLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVIDPGAVQITRLS 70 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFD---STIV---------ARQRV 108 L + L+E + + A T G N FD S + R+ Sbjct: 71 PLELEQTGLSEWEFSQAVHNAMAQPNTCT-TGYNSIRFDDECSRFLFYRNLINPYEREWK 129 Query: 109 TYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + + L V R+ H D + D + L+ + G+ N H A+ D Sbjct: 130 NGNSRWDLLDVVRMTHALRPDGIEWPRRD---DGSPSFRLEHLTAANGLSHANAHDAVSD 186 Query: 169 AAATAFCFDMLRH 181 AT ++R Sbjct: 187 VKATIALAQLIRK 199 >UniRef50_B3W7P1 DNA polymerase III, alpha subunit n=4 Tax=Lactobacillus casei group RepID=B3W7P1_LACCB Length = 172 Score = 71.6 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 22/181 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ +++D E + + +++ + + G + + K +++ Sbjct: 2 KEYVIMDTE---FNSTSNRAIQISAVRIRDG----LHIADQFNRFIPSPDKFDQLHIIRT 54 Query: 63 RGLY-REALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVT--YSMPFSPLT 118 + + L + W+R G + D+ + + +P Sbjct: 55 SNMRYSDYLALPSLQQTVRDYVAWMRTTIDIVGWSIEGDAGRIRETFKKGSHGIP----- 109 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + D+A + + + T L +A LG+PV H+A+ D T Sbjct: 110 ----KNWKFIDIADIVEKRYSFNATPP--LQGLANVLGIPVNRTHNALDDCLRTFGVIKA 163 Query: 179 L 179 L Sbjct: 164 L 164 >UniRef50_B9KV31 Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides KD131 RepID=B9KV31_RHOSK Length = 538 Score = 71.6 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 54/178 (30%), Gaps = 23/178 (12%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +D+ET + ++G+ V S+ +T ++G Sbjct: 217 RFFALDVET----ANHDRGSICQIGVACVRPDSSI--ETWVTYVDPQVDRWVFTYLHGIS 270 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + + +QD L G T FD + VA + +P Sbjct: 271 ARTVQGA----PTFSEVLPVLQDALNGATIYQH-SGFDRSAVAAACINCCLPIP------ 319 Query: 122 VWHHRLADLAAYAAGKLN-IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 D A + GL ++ + LG+ V H A DA A A Sbjct: 320 --QWEWRDSVHVARAAWPELRGNGGHGLASLKQHLGL-VFEHHDAGEDARAAAEVVLH 374 >UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W6D5_DESAS Length = 957 Score = 71.6 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 52/192 (27%), Gaps = 36/192 (18%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + +V + TTG D +E L+ V + + + + + I G Sbjct: 1 MLENFVVAHIITTGNDPLKEDVIETSLVRVSGSQIAETISFYS-KPARKLPVRVKNITGL 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + E+ ++ +T + + + FS Sbjct: 60 SDETLADK----PFFNELLPEILSFIGASTLV-----------SCEADLIYIFFSAAAGY 104 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL----GVPVVNRHSAIGD-------A 169 + + L ++ L + E L + D A Sbjct: 105 PLPN---LCLDVVQLAQILYPTLINYRLANLYEYLFNTDDILSS------SDNILAGEMA 155 Query: 170 AATAFCFDMLRH 181 TA F LR Sbjct: 156 LLTARVFLKLRE 167 >UniRef50_Q2WBD0 Inhibitor of the KinA pathway to sporulation n=2 Tax=Magnetospirillum RepID=Q2WBD0_MAGSA Length = 188 Score = 71.6 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 58/188 (30%), Gaps = 27/188 (14%) Query: 5 LIVVDLE-TT--G------LDYDTAL-PVEVGLLNVDTGESLYFVPHITVEQLAAADPKA 54 ++V DLE TT G V+VG + +D G L + + Sbjct: 7 VVVYDLEYTTWEGARERRWSGPGEHREVVQVGAVRLDDGAELSLLVKPRLNPG--LSTYF 64 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 ++ G + + R + A + D+ G GSN A D ++ F Sbjct: 65 TDLTGITQDQVDRAGMDFP---EALCRLADFAAGADL-GSNGA-DEGVLRENCALTGCAF 119 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATA 173 R L A A + +A G+ R H A+GDA A Sbjct: 120 PFDGRCRDLAPLLITAAGAQAHIYSC---------EMAATFGLNADQRAHDALGDARQVA 170 Query: 174 FCFDMLRH 181 L Sbjct: 171 QVLRHLLK 178 >UniRef50_Q2SI88 Putative exonuclease n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SI88_HAHCH Length = 176 Score = 71.6 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 55/175 (31%), Gaps = 21/175 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETT LD DTA VE+ + N + L V+ A ++ E L Sbjct: 4 LFLDTETTNLD-DTAEVVEIAVTNRHGTKLLN----TLVKPQGPMSAAAQNVHQISELEL 58 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + V L N FD I+ + +++P P T Sbjct: 59 KGA----PSWPITYPRVYKLLYKRPVIIFNADFDVRILRQTCNAWALPPIPFT------- 107 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNR----HSAIGDAAATAFC 175 L + YA + A L + H A DA T+ Sbjct: 108 PLCAMRLYAEFHGQWSEKGQFKYQSQARALEQIGHPAAATSLHRAAYDAQMTSEI 162 >UniRef50_C4Z5C1 Sporulation inhibitor KapD n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z5C1_EUBE2 Length = 324 Score = 71.6 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 50/197 (25%), Gaps = 35/197 (17%) Query: 1 MAKQLIVVDLE----TTGLDYDTA----LPVEVGLLNV--DTGESLYFVPHITVEQLAAA 50 M IV+DLE G + +++G V + I + Sbjct: 1 MFMNYIVMDLEWNQSAKGKQFSEDHFPFEIIQIGAAKVNEKLDIVDEWQCTIKPQVYTKL 60 Query: 51 DPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA------ 104 +I G E L E +W D T V Sbjct: 61 QNTVRKILGITENDLANGT----DFVSGVTEFLEWCGD----------DYTFVTWGSMDI 106 Query: 105 RQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTE-LEGLDAVAERLGVPVVNR- 162 + V + L L +N + L + + G+ Sbjct: 107 TELRR---NMKFYDVPENFPKPLLYLDLQKLYSINFSDGKTRMNLKSAIDEQGIKGDEHY 163 Query: 163 HSAIGDAAATAFCFDML 179 HSA+ DA TA L Sbjct: 164 HSAMSDARYTAKIMKKL 180 >UniRef50_B3R1Q5 Putative membrane linked exonuclease n=1 Tax=Cupriavidus taiwanensis RepID=B3R1Q5_CUPTR Length = 248 Score = 71.2 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 51/185 (27%), Gaps = 28/185 (15%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNV----DTGESLYFVPHIT--VEQLAAADPKA 54 M ++ +V ETTGL PV +GLL V G L V E A Sbjct: 1 MPMRVAIVSTETTGLTPA-DEPVSIGLLLVEVSPRAGGLLREVAEYYGSQEPTVPISAAA 59 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMP 113 + +G L G ++ + AF++ ++ + Sbjct: 60 TDTHGLTADMLRGRRFD-------LGAIRAIIDDADVLVAHGAAFNARMLEKVLPGI--- 109 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + + LD + E+L + A+ D A + Sbjct: 110 --------RDKRWRCSVRQVRWSQ--YFHAANHKLDTLCEQLHIFRPRPQVALDDCLALS 159 Query: 174 FCFDM 178 Sbjct: 160 KLLFR 164 >UniRef50_C3Z6U9 Putative uncharacterized protein n=2 Tax=Branchiostoma floridae RepID=C3Z6U9_BRAFL Length = 231 Score = 71.2 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 58/203 (28%), Gaps = 30/203 (14%) Query: 1 MAKQLIVVDLET----TGLDYDTALPVEV--GLLNVD----------TGESL--YFVPHI 42 + + +DLET TGL+ D E+ + D G SL Sbjct: 17 QIQTFVFLDLETTDLRTGLEEDEPQVTEISLAAVRRDQLLSGTTVPPGGASLPRIMDKFT 76 Query: 43 TVEQLA-AADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPA-FD 99 + + PKA EI + L + + ++ + + + N FD Sbjct: 77 ACVRPTHSIHPKAAEITNLTNQSLGKHRVFDEDLVKSVVHLLNRQEPPVCLVAHNGDWFD 136 Query: 100 STIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGV- 157 ++ + + + + A L L + E GV Sbjct: 137 FPVLKSELRR----SKTAGLFPKDVLCVDTMLAMKH--LYAGQFRSFSLPRLHENLFGVA 190 Query: 158 -PVVNRHSAIGDAAATAFCFDML 179 P H+A GD + Sbjct: 191 PPPEVAHTAEGDVITMVKIVKKM 213 >UniRef50_A6G9M5 DNA polymerase III, epsilon subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G9M5_9DELT Length = 389 Score = 71.2 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 52/183 (28%), Gaps = 17/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +DLET D + +GL V G + + VE + DP ++G R Sbjct: 206 EFVTLDLETANADPAS--VCAMGLATVCEGRLVDAGGEL-VEPQSRFDPVHTRLHGIDRR 262 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 A W + + L G N F + + T+ Sbjct: 263 ----AVRGVGPFAEHWLPLAEELAGRWVLAHNATFAARCLRALASTFGPGAPAPPRL--- 315 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + L+ +AE G+ RH A A ++ Sbjct: 316 ------LCTLRLARAVWPREPGHALERLAEEFGLS-APRHDPHAGARCCAELALLMCSLR 368 Query: 184 AAH 186 Sbjct: 369 GVA 371 >UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=A4ADV7_9GAMM Length = 482 Score = 70.8 bits (173), Expect = 2e-11, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 55/186 (29%), Gaps = 16/186 (8%) Query: 9 DLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEINGYYERGL 65 D ET G+D P + L D +L P + Q P A I G + Sbjct: 11 DYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDACLITGITPQTA 70 Query: 66 YREALTEQQT-AVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVT-YSMPFSPLTVGRV 122 E + E Q + E G G N FD T+ P++ Sbjct: 71 LAEGVVEAQFMSTILDEFMK--PGTCAVGYNSLRFDDTVTRATLYRNLRDPYAREYGDGR 128 Query: 123 WHHRLADLAAYAAGKLNI--------DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 L D+ A D L+ + + G+ H A+ D AT Sbjct: 129 SRWDLIDVVRTAYALRPEGLNWPTRDDGLPSFRLEDLCKANGLEQGQAHDALVDVKATIA 188 Query: 175 CFDMLR 180 ++ Sbjct: 189 LARAIK 194 >UniRef50_Q6QH49 3' repair exonuclease n=4 Tax=Alphabaculovirus RepID=Q6QH49_NPVAG Length = 230 Score = 70.8 bits (173), Expect = 2e-11, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 49/210 (23%), Gaps = 42/210 (20%) Query: 3 KQLIVVDLETTGL-DYDTA--LPVE-----------VGLLNVDTGESLYFVPHITVEQLA 48 K + +DLETTGL E +G V +L F Sbjct: 5 KTYVFLDLETTGLPKLQNDQTQITELSLQCVTREELLGAARVCNKLTLCFE------PTV 58 Query: 49 AADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNP-AFDSTIVARQ 106 +A + L + L +++ L N AFD I+ + Sbjct: 59 PISEQASALTQLNAENLRGQPLFDKRAVALIESFLALLSPPVCLVAYNGFAFDFPILYKH 118 Query: 107 RVTYSMPFSPLT-----------------VGRVWHHRLADLAAYAAGKLNIDPTELEGLD 149 + + + + + L Sbjct: 119 LKDNGFASAVQCADAYHALFAILDGSGPPTMKRSKSGTVTVKLCPWQRGARPK-QSYKLV 177 Query: 150 AVAERL-GVPVVNRHSAIGDAAATAFCFDM 178 + +R G + H A D A Sbjct: 178 DLYKRHVGGNLKG-HRAEDDCAMMMQLVQK 206 >UniRef50_A6UUF8 Exonuclease RNase T and DNA polymerase III n=3 Tax=cellular organisms RepID=A6UUF8_META3 Length = 175 Score = 70.5 bits (172), Expect = 3e-11, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 50/183 (27%), Gaps = 23/183 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV--DTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 I++D ET +EVG + V GE + A+E++ Sbjct: 2 IILDFETNTRKPY--DVIEVGAIKVAFIDGEYKKIDAFHRYYYSKYGINQRALEVHRLTP 59 Query: 63 RGLYREALTEQQTAVAWG---EVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + + + A + E ++ + T N F+ R + + Sbjct: 60 QKIKN-LRGGENYAKYFRQDNEFIEFCQDCNTLVAHNITFEL----RYLGDMVTFDNHIC 114 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCF 176 H + + L G+ HSAI D T Sbjct: 115 TMAQNKHIV-------RAVDIRGGLKPPKLIEACNHYGIDFDEEQYHSAIYDVTKTLEVL 167 Query: 177 DML 179 + + Sbjct: 168 NCM 170 >UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCZ9_9CAUL Length = 476 Score = 70.5 bits (172), Expect = 3e-11, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 55/169 (32%), Gaps = 16/169 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYYE 62 + D ETTGL V+ ++ D E F ++ PKAM N Sbjct: 3 FVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDRFELRCRLQPHVVPHPKAMLANRLSI 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRG---NTFAGSN-PAFDSTIVARQRVT----YSMPF 114 L L+ E++ L G F G N FD ++ + Sbjct: 63 ERLTD--LSLPSHYDMVREIRRRLSGWGRGIFIGYNSIRFDEEMLRHAFFQNLFPAYLTS 120 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPV 159 +P H + A A+ L + + L+AVA G+ V Sbjct: 121 TPGCGRADAMHIVLTACADASACLTLPLAADGRKTFRLEAVAAANGLNV 169 >UniRef50_Q1VTB2 Putative uncharacterized protein n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VTB2_9FLAO Length = 424 Score = 70.5 bits (172), Expect = 3e-11, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 55/196 (28%), Gaps = 34/196 (17%) Query: 5 LIVVDLETTGLDYDTA------LPVEVGLLN-------VDTGESLYFVPHITVEQLAAAD 51 ++VD+ET+GL TA +++ + + + I ++ Sbjct: 242 YLIVDIETSGLPQKTANGTNYPEIIQIAWVVTNKKGLVLKKNSIIIETDFIKENNYSSIV 301 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTY 110 + + R+ + A ++ + ++ N FD +I+ Sbjct: 302 N--------IDFEVARKVMF--PLQHALKKLTEDIKICDYVVSHNTDFDLSILGHYYTKL 351 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG----VPVVNRHSAI 166 + + I ++E V N H+A Sbjct: 352 ------YGINPLSRKATICTMKSTVNYCKIPNKFGYKFPKLSELYNKLFDYEVKNSHNAE 405 Query: 167 GDAAATAFCFDMLRHT 182 D T CF L+ Sbjct: 406 IDVLHTLKCFKKLKSI 421 >UniRef50_B0WAN4 Three prime repair exonuclease 1 n=3 Tax=Culicini RepID=B0WAN4_CULQU Length = 325 Score = 70.1 bits (171), Expect = 3e-11, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 47/163 (28%), Gaps = 18/163 (11%) Query: 5 LIVVDLETT---GLDYDTALPVE---VGLLNV-----DTGES--LYFVPHITVEQLAAAD 51 + DLETT GL T E + + GE + + Sbjct: 7 FVFFDLETTDIPGL--KTPKITELSLIACSKLHLLQTKHGEIPRVLHKQTFCLNPQRLIH 64 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPA-FDSTIVARQRVT 109 PKA EI G Y L E+ ++ TA + L+ N FD I+ ++ Sbjct: 65 PKASEITGLYNDLLENESKFDENTAQLIVLFLERLQSPTCLVAHNGNRFDFPILKKELEA 124 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGK-LNIDPTELEGLDAV 151 T L + + E L + Sbjct: 125 LKAHLPDATYCIDSLPLFQTLDQISTQQEKIAQENEKNELADL 167 >UniRef50_Q7X182 Lfe210p1 (Fragment) n=1 Tax=Leptospirillum ferrooxidans RepID=Q7X182_9BACT Length = 111 Score = 70.1 bits (171), Expect = 3e-11, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 9/115 (7%) Query: 11 ETTGL--DYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYRE 68 ET+GL D + A VE L D + + F V + ING Sbjct: 2 ETSGLLRDPE-ARVVEWALSVWDGDKEI-FRGGSLVSGKGPIPEEVSRINGITTEMT--- 56 Query: 69 ALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS-MPFSPLTVGRV 122 + +GE ++ L+ N +FD ++ R + +P + + Sbjct: 57 -VGCPTFRELYGEWKEHLKKAIVVAHNLSFDLGMINRDLIRQGEIPLGNPGIDSL 110 >UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=B3PLL7_CELJU Length = 497 Score = 70.1 bits (171), Expect = 4e-11, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 51/192 (26%), Gaps = 15/192 (7%) Query: 9 DLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAAD---PKAMEINGYYERGL 65 D ET G PV+ + D ++ P + A P+A I G + Sbjct: 13 DYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEACLITGITPQEA 72 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFSPLTVGRVW 123 + ++E A G N FD + P+ Sbjct: 73 EAKGVSEADFIAAIHRELARPGTCG-VGYNSIRFDDEVTRYTLYRNFYDPYEREWRNGNS 131 Query: 124 HHRLADLAAYAAGKLNI--------DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 L D+ D T L+ + E + H A+ D AT Sbjct: 132 RWDLIDVLRMTRALRPEGIHWPDYEDGTPCFKLERLTEVNRISHEAAHDALSDVHATIAM 191 Query: 176 FDMLRHTAAAHL 187 L + L Sbjct: 192 -ARLLKSRQPKL 202 >UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammaproteobacteria RepID=Q21I25_SACD2 Length = 485 Score = 69.7 bits (170), Expect = 5e-11, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 59/206 (28%), Gaps = 28/206 (13%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI---TVEQLAAADPKAMEI 57 M K D ET G + P + + D ++ P + + +P+A + Sbjct: 1 MQKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLV 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLR--GNTFAGSN-PAFDSTIVARQRVTYSMPF 114 G + + +TE++ ++ L G G N FD + Y++ Sbjct: 61 TGLTPQETLAKGVTEREF---IKQIHRELAKPGTCGVGYNSIRFD-----DEVTRYTLYR 112 Query: 115 SPLTVGRVW----HHRLADLAAYAAGKLNIDPT---------ELEGLDAVAERLGVPVVN 161 + + R + L+ + + G+ + Sbjct: 113 NYFDPYEREWRNGNSRWDIIDMVRLCYALRPEGIEWPVVDGKPSFRLENLTKVNGIVHAS 172 Query: 162 RHSAIGDAAATAFCFDMLRHTAAAHL 187 H A D AT L L Sbjct: 173 AHDAYSDVEATIKL-ARLVREKQPAL 197 >UniRef50_C4XHY0 Putative uncharacterized protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHY0_DESMR Length = 179 Score = 69.7 bits (170), Expect = 5e-11, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 38/185 (20%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTG----ESLYFVPHIT-VEQLAAADPKAMEINGY 60 +V+D ET G + + V + +D + + + +P A +NG Sbjct: 4 LVIDFETNGF--YRSSVLSVAAIKIDVDWNLKKVDRLDTFVRHYHPVEKWNPHAQAVNGL 61 Query: 61 YERGLYREALTEQQTAVAWGE---VQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSP 116 + + R T + + + + ++ F N FDS+ ++ Sbjct: 62 SAKKIER-LRTSAEYPAYFKDDHGLTNFASEAVFAVAHNAKFDSSF-------ANLQIPW 113 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + ++ +LAD A V H A+ DA F Sbjct: 114 ICTMKLCGGKLADAARLRGIV-------------------VKQSQLHEALYDAEVCLDLF 154 Query: 177 DMLRH 181 +L Sbjct: 155 TLLVR 159 >UniRef50_B2WGV1 RNA exonuclease 4 n=2 Tax=Pleosporineae RepID=B2WGV1_PYRTR Length = 358 Score = 69.7 bits (170), Expect = 5e-11, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 65/180 (36%), Gaps = 25/180 (13%) Query: 4 QLIVVDLETTGLDYD--TALPVE-VGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +D E G+ + + V L+N + + ++ V + ++G Sbjct: 150 KYVALDCEMVGIGPEPNRDSALARVSLVNFHGHQI--YDSYVQVPRQVQVTDYRTAVSGI 207 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R L ++ + +++ L G G D ++ + Sbjct: 208 EPRHLRKDV--ARPFDEVRNDIKILLTGRILVGHAVKNDLDVL---------------IL 250 Query: 121 RVWHHRLADLAAYAAGK-LNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFD 177 + + D + ++ + L P GL +AE+ LGV + HS++ DA AT F Sbjct: 251 KHDKRFIRDTSKFSKFRALATIPGRTPGLKLLAEKLLGVEIQVGAHSSVEDARATMALFR 310 >UniRef50_UPI0000382776 hypothetical protein Magn03001139 n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382776 Length = 255 Score = 69.7 bits (170), Expect = 5e-11, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 10/92 (10%) Query: 85 WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTE 144 L G N AFD+ + + + + V + +LA + T Sbjct: 1 MLPGRVLVAHNAAFDTRFLRAEIGRAGIAAAIDPVACLCTQQLA----------SRYLTG 50 Query: 145 LEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L A +GV HSA+GDA ATA Sbjct: 51 SRALAACCAAVGVVHDGVHSALGDARATAGLL 82 >UniRef50_Q6MAQ4 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAQ4_PARUW Length = 193 Score = 69.7 bits (170), Expect = 5e-11, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 12/174 (6%) Query: 6 IVVDLETTGLDYDTALPVEVG--LLNVDTGESLYFVPHITVEQL---AAADPKAMEINGY 60 I +D+E++GLD +E+ +++V TGE I + L D ++EING+ Sbjct: 4 IFLDIESSGLDSFHHRALEIAFKVIDVRTGEERLTYQSIVKQPLEVWEKRDLASIEINGF 63 Query: 61 YERGL---YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVAR---QRVTYSMPF 114 L EA+ + + + +++ + NPAFD ++ + Sbjct: 64 TWEKLLLGQEEAVVKSEIVQIFNDLKIQRGRAVYICQNPAFDRGFFSQIVDVYTQEKYHW 123 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIG 167 + + Y + + +A+ G+P+ + H+A+ Sbjct: 124 PYHWLDFASMYWALQFKFYTQKHEHFPLEINLSKNTIAQHFGLPIESSPHNALN 177 >UniRef50_C2KW89 Putative uncharacterized protein n=1 Tax=Oribacterium sinus F0268 RepID=C2KW89_9FIRM Length = 388 Score = 69.3 bits (169), Expect = 7e-11, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 47/161 (29%), Gaps = 35/161 (21%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++++ D+ETTGL +A +GLL E + + Sbjct: 24 EEILFFDIETTGLSPKSAQIYSIGLLLFKASEMEIVQLFAN-----SLSEEI-------- 70 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNP-AFDSTIVARQRVTYSMPFSPLTVG 120 E Q++ + T F N AFD+ + + Y + + Sbjct: 71 --------------EVLQEFQEYCKAKTQFISFNGKAFDTPFLEKSYSQYGLKSPITGLP 116 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 ++ DL + L LG+ + Sbjct: 117 QL------DLFKMIQSRRKFYQLPSYKLKECERFLGIQRED 151 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 178 9e-44 UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostri... 175 8e-43 UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia ... 173 3e-42 UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacte... 170 2e-41 UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte... 170 2e-41 UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero... 169 3e-41 UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 168 7e-41 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 168 9e-41 UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 167 2e-40 UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia... 166 2e-40 UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba... 166 3e-40 UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia... 165 5e-40 UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth... 165 7e-40 UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Strept... 165 8e-40 UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhod... 164 1e-39 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 164 1e-39 UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit... 163 2e-39 UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive... 163 3e-39 UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermane... 163 4e-39 UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili... 162 4e-39 UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu... 161 7e-39 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 161 8e-39 UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=... 161 1e-38 UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re... 160 2e-38 UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte... 159 4e-38 UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein... 159 4e-38 UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 T... 158 7e-38 UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 158 8e-38 UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=... 158 8e-38 UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha s... 158 1e-37 UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 157 1e-37 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 157 2e-37 UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Coryneb... 157 2e-37 UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=... 157 2e-37 UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu... 156 3e-37 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 156 3e-37 UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A... 156 4e-37 UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli R... 156 4e-37 UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrh... 156 4e-37 UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Fran... 155 6e-37 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 155 7e-37 UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like do... 155 7e-37 UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostri... 155 8e-37 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 154 1e-36 UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clost... 154 1e-36 UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi... 154 1e-36 UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flav... 154 1e-36 UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseu... 154 2e-36 UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asti... 153 2e-36 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 153 2e-36 UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacte... 153 2e-36 UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 153 2e-36 UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ... 153 2e-36 UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para... 153 4e-36 UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholep... 153 4e-36 UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit... 153 4e-36 UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG en... 152 4e-36 UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridi... 152 5e-36 UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostri... 152 5e-36 UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 152 6e-36 UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc... 152 7e-36 UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI... 151 7e-36 UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 151 7e-36 UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostri... 151 8e-36 UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosm... 151 9e-36 UniRef50_C0FUI4 Putative uncharacterized protein n=1 Tax=Rosebur... 151 1e-35 UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostr... 151 1e-35 UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flex... 151 1e-35 UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte... 151 1e-35 UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidete... 151 1e-35 UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid... 150 2e-35 UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=A... 150 2e-35 UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polyme... 150 2e-35 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 150 2e-35 UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive... 150 2e-35 UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquif... 150 2e-35 UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 150 2e-35 UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit... 150 2e-35 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 150 3e-35 UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo... 150 3e-35 UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida... 150 3e-35 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 150 3e-35 UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cell... 150 3e-35 UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacill... 150 3e-35 UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit... 150 3e-35 UniRef50_A9F4T5 DNA polymerase III, epsilon subunit n=1 Tax=Sora... 149 4e-35 UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 149 5e-35 UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actin... 149 5e-35 UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostri... 149 5e-35 UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidob... 149 6e-35 UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenib... 148 6e-35 UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphi... 148 6e-35 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 148 7e-35 UniRef50_C7G8J4 Putative DNA polymerase III, alpha chain n=1 Tax... 148 7e-35 UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=... 148 7e-35 UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alterom... 148 9e-35 UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus Re... 148 1e-34 UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robigin... 148 1e-34 UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinom... 148 1e-34 UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult... 148 1e-34 UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 148 1e-34 UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 148 1e-34 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 148 1e-34 UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphi... 148 1e-34 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 148 1e-34 UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostri... 148 1e-34 UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrog... 148 1e-34 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 147 1e-34 UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti... 147 1e-34 UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax... 147 2e-34 UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Euba... 147 2e-34 UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob... 147 2e-34 UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy... 147 2e-34 UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida... 146 2e-34 UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2 146 2e-34 UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococ... 146 2e-34 UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exon... 146 3e-34 UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinom... 146 3e-34 UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 146 3e-34 UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 146 4e-34 UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Trepon... 146 4e-34 UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrot... 146 4e-34 UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para... 146 4e-34 UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capn... 146 4e-34 UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 146 5e-34 UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 146 5e-34 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 145 6e-34 UniRef50_A0M2M5 Exonuclease family protein n=1 Tax=Gramella fors... 145 6e-34 UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum cen... 145 6e-34 UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=... 145 7e-34 UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut ... 145 7e-34 UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit... 145 8e-34 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 145 8e-34 UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Beta... 145 8e-34 UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bactero... 145 8e-34 UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bact... 145 9e-34 UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemma... 145 9e-34 UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alp... 145 1e-33 UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Bur... 145 1e-33 UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ... 145 1e-33 UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Acti... 144 1e-33 UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot... 144 1e-33 UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algorip... 144 2e-33 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 144 2e-33 UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gamm... 144 2e-33 UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bact... 143 2e-33 UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonel... 143 3e-33 UniRef50_B3R0A4 DNA polymerase III alpha subunit n=1 Tax=Candida... 143 3e-33 UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1... 143 3e-33 UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Pro... 143 3e-33 UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capn... 142 4e-33 UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodo... 142 5e-33 UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamm... 142 6e-33 UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0... 142 6e-33 UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Beta... 142 6e-33 UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gam... 142 6e-33 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 142 6e-33 UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 142 7e-33 UniRef50_C8RRD8 Exonuclease n=2 Tax=Corynebacterium jeikeium Rep... 142 7e-33 UniRef50_C9XLH5 Putative DNA polymerase III, epsilon chain n=5 T... 142 7e-33 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 141 8e-33 UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brev... 141 8e-33 UniRef50_C6CYA2 DNA polymerase III, epsilon subunit n=2 Tax=Baci... 141 8e-33 UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacte... 141 8e-33 UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caul... 141 8e-33 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 141 8e-33 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 141 1e-32 UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio cross... 141 1e-32 UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atop... 141 1e-32 UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 141 1e-32 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 141 1e-32 UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerof... 141 1e-32 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 141 1e-32 UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, pu... 141 1e-32 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 141 1e-32 UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1... 141 1e-32 UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlam... 141 2e-32 UniRef50_C6WZM7 DNA polymerase III epsilon subunit n=2 Tax=Flavo... 141 2e-32 UniRef50_A4C086 DNA polymerase III subunit n=2 Tax=Polaribacter ... 141 2e-32 UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51... 140 2e-32 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 140 2e-32 UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruege... 140 2e-32 UniRef50_C3RPR6 3'-5' exonuclease n=2 Tax=Bacteria RepID=C3RPR6_... 140 2e-32 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 140 2e-32 UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia ... 140 2e-32 UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Deth... 140 2e-32 UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neor... 140 2e-32 UniRef50_C5B532 DNA polymerase III epsilon subunit n=1 Tax=Methy... 140 3e-32 UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucl... 140 3e-32 UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha ... 140 3e-32 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 140 3e-32 UniRef50_C4GLS9 Putative uncharacterized protein n=1 Tax=Kingell... 140 3e-32 UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit... 140 3e-32 UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostri... 140 3e-32 UniRef50_Q48KX3 DNA polymerase III, epsilon subunit n=35 Tax=Pro... 140 4e-32 UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit... 140 4e-32 UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micr... 139 4e-32 UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synerg... 139 4e-32 UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gam... 139 4e-32 UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidob... 139 4e-32 UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria ... 139 5e-32 UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helic... 139 5e-32 UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bac... 139 5e-32 UniRef50_B0UD78 DNA polymerase III, epsilon subunit n=5 Tax=Alph... 139 5e-32 UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodoth... 139 6e-32 UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysi... 138 7e-32 UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1... 138 7e-32 UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 138 7e-32 UniRef50_A4SZE6 DNA polymerase III, epsilon subunit n=1 Tax=Poly... 138 8e-32 UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 138 8e-32 UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1... 138 9e-32 UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xyla... 138 9e-32 UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acid... 138 9e-32 UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Nei... 138 9e-32 UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam... 138 1e-31 UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dich... 138 1e-31 UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propion... 138 1e-31 UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuring... 138 1e-31 UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiacea... 138 1e-31 UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydroge... 138 1e-31 UniRef50_Q11G58 DNA polymerase III, epsilon subunit n=1 Tax=Chel... 138 1e-31 UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acid... 138 1e-31 UniRef50_B1VHF1 Putative exonuclease n=1 Tax=Corynebacterium ure... 138 1e-31 UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycopla... 137 1e-31 UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kord... 137 2e-31 UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-posit... 137 2e-31 UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Pro... 137 2e-31 UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ... 137 2e-31 UniRef50_Q3K0L7 Exonuclease, DNA polymerase III, epsilon subunit... 137 2e-31 UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-rel... 137 2e-31 UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 137 2e-31 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 137 2e-31 UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 137 2e-31 UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alph... 137 2e-31 UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chro... 136 2e-31 UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=... 136 2e-31 UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinob... 136 3e-31 UniRef50_A8TQX4 DNA polymerase III, epsilon subunit n=1 Tax=alph... 136 3e-31 UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lo... 136 3e-31 UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Rose... 136 3e-31 UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive... 136 3e-31 UniRef50_C0WGE7 Possible exonuclease n=2 Tax=Corynebacterium Rep... 136 4e-31 UniRef50_Q04EX4 3'-5' exonuclease domain and Rad3-related DNA he... 136 4e-31 UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clost... 136 4e-31 UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Fl... 136 4e-31 UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_... 136 4e-31 UniRef50_UPI0001B583F7 DNA polymerase III n=2 Tax=Streptomyces R... 136 4e-31 UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidob... 136 5e-31 UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macroco... 136 5e-31 UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo... 136 5e-31 UniRef50_A5IJS5 DNA polymerase III, epsilon subunit n=6 Tax=Ther... 136 5e-31 UniRef50_Q3AAH9 Putative DNA polymerase III, epsilon subunit n=1... 136 5e-31 UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc Re... 135 5e-31 UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive... 135 6e-31 UniRef50_A1KUV1 DNA polymerase III, epsilon chain n=18 Tax=Neiss... 135 6e-31 UniRef50_C8SCL6 DNA polymerase III, epsilon subunit n=1 Tax=Ferr... 135 6e-31 UniRef50_C3XME5 DNA polymerase III subunit epsilon n=1 Tax=Helic... 135 6e-31 UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydr... 135 6e-31 UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anap... 135 6e-31 UniRef50_C9NHS4 DNA polymerase III, epsilon subunit n=2 Tax=Stre... 135 7e-31 UniRef50_A4U2R7 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 135 7e-31 UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplas... 135 7e-31 UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, e... 135 7e-31 UniRef50_Q2VYH6 DNA polymerase III, epsilon subunit and related ... 135 7e-31 UniRef50_A0PN08 DNA polymerase n=1 Tax=Mycobacterium ulcerans Ag... 135 7e-31 UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachl... 135 9e-31 UniRef50_Q0EZC1 Probable DNA polymerase III (Epsilon chain) prot... 135 9e-31 UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothio... 135 1e-30 UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flav... 135 1e-30 UniRef50_C3RQT5 DNA polymerase III subunit epsilon n=1 Tax=Molli... 135 1e-30 UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Strep... 135 1e-30 UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=... 134 1e-30 UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolb... 134 1e-30 UniRef50_C5VCF0 Exonuclease family protein n=2 Tax=Corynebacteri... 134 1e-30 UniRef50_Q6MIB4 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 134 1e-30 UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA po... 134 1e-30 UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 134 1e-30 UniRef50_C1QET6 Exonuclease, DNA polymerase III, epsilon subunit... 134 1e-30 UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Delt... 134 2e-30 UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubr... 134 2e-30 UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=1... 134 2e-30 UniRef50_C8P2F2 Gram-positive family DNA polymerase III, alpha c... 134 2e-30 UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rick... 133 2e-30 UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia i... 133 2e-30 UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeu... 133 2e-30 UniRef50_C4XFQ7 Putative uncharacterized protein n=1 Tax=Mycopla... 133 2e-30 UniRef50_C7RR73 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 133 3e-30 UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2... 133 3e-30 UniRef50_A4X9Y0 DNA polymerase III, epsilon subunit n=6 Tax=Acti... 133 3e-30 UniRef50_C0XS38 DNA polymerase III epsilon subunit n=1 Tax=Coryn... 133 3e-30 UniRef50_B6FWT9 Putative uncharacterized protein n=1 Tax=Clostri... 133 3e-30 UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ... 133 3e-30 UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma... 133 4e-30 UniRef50_D1WX09 DNA polymerase III, epsilon subunit n=17 Tax=Str... 133 4e-30 UniRef50_C5EZ00 DNA polymerase III subunit epsilon n=2 Tax=Helic... 132 4e-30 UniRef50_Q3SKJ9 DNA polymerase III, epsilon subunit n=4 Tax=Prot... 132 4e-30 UniRef50_A3V111 Exonuclease, DNA polymerase III, epsilon subunit... 132 5e-30 UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacte... 132 5e-30 UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphyloco... 132 5e-30 UniRef50_UPI0001AEDE41 DNA polymerase III n=2 Tax=Streptomyces R... 132 5e-30 UniRef50_B9L0P4 DNA polymerase III epsilon subunit n=1 Tax=Therm... 132 5e-30 UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria Rep... 132 6e-30 UniRef50_A4CKG8 DNA polymerase III, epsilon subunit n=1 Tax=Robi... 132 6e-30 UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lact... 132 6e-30 UniRef50_B9XHY8 DNA-directed DNA polymerase n=1 Tax=bacterium El... 131 8e-30 UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex... 131 8e-30 UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclass... 131 8e-30 UniRef50_C0QPN1 DNA polymerase III subunit epsilon n=1 Tax=Perse... 131 9e-30 UniRef50_B4AHF2 DNA polymerase III PolC-type (PolIII) n=1 Tax=Ba... 131 9e-30 UniRef50_Q315G7 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 131 9e-30 UniRef50_B1I645 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 131 9e-30 UniRef50_D1NTJ1 DNA polymerase III PolC-type n=1 Tax=Bifidobacte... 131 1e-29 UniRef50_A8ET44 DNA polymerase III n=1 Tax=Arcobacter butzleri R... 131 1e-29 UniRef50_Q15SW9 Exonuclease, RNase T and DNA polymerase III n=1 ... 131 1e-29 UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromon... 131 1e-29 UniRef50_Q67M39 DNA polymerase III-like protein n=1 Tax=Symbioba... 131 1e-29 UniRef50_C8NPX3 DNA polymerase III epsilon subunit n=5 Tax=Coryn... 131 1e-29 UniRef50_D2RB05 CRISPR-associated endoribonuclease Cas2 n=2 Tax=... 130 2e-29 UniRef50_B0ADG9 Putative uncharacterized protein n=1 Tax=Clostri... 130 2e-29 UniRef50_A4T616 DNA polymerase III, epsilon subunit n=11 Tax=Myc... 130 2e-29 UniRef50_Q8EUK5 DNA polymerase III subunit alpha n=1 Tax=Mycopla... 130 2e-29 UniRef50_C0GM30 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 130 2e-29 UniRef50_A8LH88 Exonuclease RNase T and DNA polymerase III n=2 T... 130 2e-29 UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus ... 130 2e-29 UniRef50_C5CEK5 DNA polymerase III, epsilon subunit n=1 Tax=Kosm... 130 2e-29 UniRef50_B8R965 Putative DNA polymerase III epsilon subunit (Fra... 130 3e-29 UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Bur... 130 3e-29 UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candi... 130 3e-29 UniRef50_Q8D3D2 DnaQ protein n=1 Tax=Wigglesworthia glossinidia ... 130 4e-29 UniRef50_C2H7V1 Possible DNA polymerase III subunit epsilon n=5 ... 130 4e-29 UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Strepto... 129 4e-29 UniRef50_C5VD41 DNA polymerase III epsilon subunit n=2 Tax=Coryn... 129 4e-29 UniRef50_A6GRM1 DNA polymerase III subunit epsilon n=1 Tax=Limno... 129 4e-29 UniRef50_D0L0M1 DNA polymerase III, epsilon subunit n=1 Tax=Halo... 129 4e-29 UniRef50_B3RU88 Putative uncharacterized protein n=1 Tax=Trichop... 129 4e-29 UniRef50_Q2SSE0 DNA polymerase III, alpha subunit, Gram-positive... 129 5e-29 UniRef50_C6IVA0 DNA polymerase III n=1 Tax=Paenibacillus sp. ora... 129 5e-29 UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1... 129 5e-29 UniRef50_A7K086 DNA polymerase III epsilon subunit n=22 Tax=Vibr... 129 5e-29 UniRef50_B0TF42 DNA polymerase iii polc-type n=1 Tax=Heliobacter... 129 6e-29 UniRef50_D2BQ89 DNA polymerase III, epsilon chain n=4 Tax=Lactoc... 129 6e-29 UniRef50_B0RTE6 DNA polymerase III epsilon chain n=11 Tax=Proteo... 128 6e-29 UniRef50_D1B3F1 DNA polymerase III, epsilon subunit n=1 Tax=Sulf... 128 9e-29 UniRef50_Q31RN6 Exonuclease n=2 Tax=Synechococcus elongatus RepI... 128 9e-29 UniRef50_C9RIR1 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 128 9e-29 UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchn... 128 1e-28 UniRef50_B2A7J4 DNA polymerase III, epsilon subunit n=1 Tax=Natr... 128 1e-28 UniRef50_C1XKD8 DNA polymerase III, alpha subunit (Gram-positive... 128 1e-28 UniRef50_Q1V197 DNA polymerase III n=3 Tax=Candidatus Pelagibact... 128 1e-28 UniRef50_UPI0000D530A7 DNA polymerase III subunit epsilon n=1 Ta... 128 1e-28 UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokd... 128 1e-28 UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular or... 128 1e-28 UniRef50_Q9K6I8 BH3741 protein n=1 Tax=Bacillus halodurans RepID... 128 1e-28 UniRef50_UPI000196B395 hypothetical protein CATMIT_00376 n=1 Tax... 127 1e-28 UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=... 127 2e-28 UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobac... 127 2e-28 UniRef50_A8F6Z7 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 127 2e-28 UniRef50_A9HX18 Putative exonuclease n=1 Tax=Bordetella petrii D... 127 2e-28 UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 T... 127 2e-28 UniRef50_B8EEZ7 DNA polymerase III, epsilon subunit n=2 Tax=Shew... 126 2e-28 UniRef50_B5XKK7 DNA polymerase III, epsilon subunit/ATP-dependen... 126 3e-28 UniRef50_B9JXT6 DNA polymerase III epsilon subunit-like 3-5 exon... 126 3e-28 UniRef50_A5IU60 Exonuclease, RNase T and DNA polymerase III n=64... 126 3e-28 UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=5... 126 3e-28 UniRef50_Q1NJL0 DNA polymerase III, epsilon subunit n=1 Tax=delt... 126 3e-28 UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseu... 126 3e-28 UniRef50_C9RIV2 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 126 3e-28 UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 fam... 126 4e-28 UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 126 4e-28 UniRef50_Q0BM06 DNA-directed DNA polymerase n=20 Tax=Francisella... 126 4e-28 UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alic... 126 4e-28 UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit... 126 5e-28 UniRef50_Q03AH5 DNA polymerase III, epsilon subunit related 3'-5... 126 5e-28 UniRef50_Q03C57 3'-5' exonuclease and CRISPR-associated protein ... 126 5e-28 UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd... 126 5e-28 UniRef50_B1I518 DNA-directed DNA polymerase n=1 Tax=Candidatus D... 125 6e-28 UniRef50_C5F3P4 DNA polymerase III n=1 Tax=Lactobacillus paracas... 125 6e-28 UniRef50_A9AZA6 DNA polymerase III, epsilon subunit n=1 Tax=Herp... 125 7e-28 UniRef50_D2QAZ6 DnaQ DNA polymerase III alpha subunit n=4 Tax=Bi... 125 7e-28 UniRef50_A9BFB1 DNA polymerase III, epsilon subunit n=1 Tax=Petr... 125 8e-28 UniRef50_A6CHW6 DNA polymerase III, alpha subunit n=1 Tax=Bacill... 125 8e-28 UniRef50_C6RD51 Mature parasite-infected erythrocyte surface ant... 125 8e-28 UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge... 125 8e-28 UniRef50_D2L4P4 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 125 9e-28 UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 125 9e-28 UniRef50_C4DV08 DNA polymerase III epsilon subunit-like 3'-5' ex... 124 9e-28 UniRef50_Q6NGF2 Putative DNA polymerase III epsilon subunit n=1 ... 124 1e-27 UniRef50_D2PY06 Exonuclease RNase T and DNA polymerase III n=1 T... 124 1e-27 UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 124 1e-27 UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit... 124 1e-27 UniRef50_C0N4N3 Exonuclease superfamily n=1 Tax=Methylophaga thi... 124 1e-27 UniRef50_A8ES54 DNA polymerase III, epsilon subunit n=4 Tax=Epsi... 124 1e-27 UniRef50_A7HHL1 Exonuclease RNase T and DNA polymerase III n=1 T... 124 2e-27 UniRef50_Q7VGH4 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7... 124 2e-27 UniRef50_A6WGD9 DNA polymerase III, epsilon subunit n=1 Tax=Kine... 124 2e-27 UniRef50_B4WSD0 Exonuclease family n=1 Tax=Synechococcus sp. PCC... 124 2e-27 UniRef50_A6QC85 DNA polymerase III, epsilon subunit n=1 Tax=Sulf... 124 2e-27 UniRef50_B6IRC5 3'-5' exonuclease n=2 Tax=Alphaproteobacteria Re... 124 2e-27 UniRef50_C0ECE2 Putative uncharacterized protein n=1 Tax=Clostri... 123 2e-27 UniRef50_C3XF27 DNA polymerase III subunit epsilon n=1 Tax=Helic... 123 2e-27 UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotom... 123 2e-27 UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 ... 123 2e-27 UniRef50_Q6Q234 Putative uncharacterized protein n=1 Tax=uncultu... 123 3e-27 UniRef50_A4U4S6 DNA polymerase III epsilon chain-like protein n=... 123 3e-27 UniRef50_A5CX11 DNA polymerase III epsilon subunit n=2 Tax=sulfu... 123 3e-27 UniRef50_A6Q1S7 DNA polymerase III, epsilon subunit n=2 Tax=Epsi... 123 3e-27 UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae ... 123 3e-27 UniRef50_P96171 DNA for Na+/glucose symporter, n=1 Tax=Vibrio pa... 123 3e-27 UniRef50_D0RQR6 DNA polymerase III PolC-type (PolIII) n=1 Tax=al... 123 3e-27 UniRef50_Q4K5K3 Exonuclease n=3 Tax=Gammaproteobacteria RepID=Q4... 123 3e-27 UniRef50_Q1JYJ5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 123 3e-27 UniRef50_A6D4K1 DNA polymerase III subunit epsilon n=1 Tax=Vibri... 123 3e-27 UniRef50_C9ZG17 Putative DNA polymerase III, epsilon chain (EC 2... 123 3e-27 UniRef50_Q2B6U9 Putative uncharacterized protein n=1 Tax=Bacillu... 123 4e-27 UniRef50_B1GYV2 DNA polymerase III epsilon subunit n=1 Tax=uncul... 123 4e-27 UniRef50_C0Z5S3 Putative uncharacterized protein n=1 Tax=Breviba... 123 4e-27 UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC21... 123 4e-27 UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class... 123 4e-27 UniRef50_B2KEE3 DNA polymerase III, epsilon subunit n=1 Tax=Elus... 123 4e-27 UniRef50_B4RBF9 DNA polymerase III epsilon chain n=3 Tax=Alphapr... 123 4e-27 UniRef50_C2MC99 Exonuclease n=3 Tax=Bacteroidales RepID=C2MC99_9... 123 4e-27 UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Cam... 123 4e-27 UniRef50_A3ZH56 DNA polymerase III n=1 Tax=Campylobacter jejuni ... 123 4e-27 UniRef50_O29290 DNA polymerase III, subunit epsilon (DnaQ) n=1 T... 123 4e-27 UniRef50_D0RQQ0 DNA polymerase III, epsilon subunit n=1 Tax=alph... 122 5e-27 UniRef50_B5FC60 DNA polymerase III subunit epsilon n=58 Tax=Vibr... 122 5e-27 UniRef50_A9VZJ3 Exonuclease RNase T and DNA polymerase III n=7 T... 122 5e-27 UniRef50_B8G6F9 DNA polymerase III, epsilon subunit n=3 Tax=Chlo... 122 5e-27 UniRef50_Q0SVV0 Helicase/exonuclease n=12 Tax=Clostridium RepID=... 122 6e-27 UniRef50_UPI000196AD91 hypothetical protein CATMIT_00292 n=1 Tax... 122 6e-27 UniRef50_P47729 DNA polymerase III polC-type n=1 Tax=Mycoplasma ... 122 6e-27 UniRef50_A5CE47 DNA polymerase III epsilon chain n=2 Tax=Orienti... 122 6e-27 UniRef50_C6SPJ4 DNA polymerase III alpha subunit n=1 Tax=Strepto... 122 6e-27 UniRef50_B9L5N4 DNA polymerase III PolC-type n=1 Tax=Nautilia pr... 122 7e-27 UniRef50_Q7UJ56 Probable DNA polymerase III polC-type n=1 Tax=Rh... 122 7e-27 UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactoba... 122 7e-27 UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase... 121 8e-27 UniRef50_A9FIM8 Exonuclease n=1 Tax=Sorangium cellulosum 'So ce ... 121 8e-27 UniRef50_C2JRY7 DNA polymerase III, epsilon subunit n=3 Tax=Ente... 121 8e-27 UniRef50_Q1PZU3 Strongly similar DNA polymerase epsilon subunit ... 121 9e-27 UniRef50_C6NVW4 DNA polymerase III epsilon subunit n=1 Tax=Acidi... 121 1e-26 UniRef50_C8X5R2 Exonuclease RNase T and DNA polymerase III n=1 T... 121 1e-26 UniRef50_C6UMV7 Putative DNA polymerase III, epsilon subunit n=1... 121 1e-26 UniRef50_D1BFD5 DNA polymerase III epsilon subunit-like 3'-5' ex... 121 1e-26 UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma ... 121 1e-26 UniRef50_Q482N7 DNA polymerase III, epsilon subunit n=1 Tax=Colw... 121 1e-26 UniRef50_A8VVX5 DNA polymerase III alpha subunit (Gram-positive ... 121 1e-26 UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop... 121 1e-26 UniRef50_A4ASW0 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 121 1e-26 UniRef50_B5YGV6 DNA polymerase III alpha subunit n=1 Tax=Thermod... 121 2e-26 UniRef50_D2EP63 DNA polymerase III, epsilon subunit/ATP-dependen... 120 2e-26 UniRef50_B8HW82 UvrD/REP helicase n=1 Tax=Cyanothece sp. PCC 742... 120 2e-26 UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria... 120 2e-26 UniRef50_A1Y2U5 Transposase n=2 Tax=Bacteria RepID=A1Y2U5_9BACT 120 2e-26 UniRef50_A1SNC5 Exonuclease, RNase T and DNA polymerase III n=1 ... 120 2e-26 UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface ant... 120 3e-26 UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla... 120 3e-26 UniRef50_A0L6G9 Exonuclease, RNase T and DNA polymerase III n=1 ... 120 3e-26 UniRef50_B2Q2X9 Putative uncharacterized protein n=1 Tax=Provide... 120 3e-26 UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DS... 119 3e-26 UniRef50_D0L8D9 Exonuclease RNase T and DNA polymerase III n=2 T... 119 3e-26 UniRef50_B5YGW1 DNA polymerase III PolC-type, putative n=1 Tax=T... 119 3e-26 UniRef50_A9NGM6 DNA polymerase III, epsilon subunit n=1 Tax=Acho... 119 3e-26 UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Dein... 119 4e-26 UniRef50_A3Q8X5 Exonuclease, RNase T and DNA polymerase III n=6 ... 119 4e-26 UniRef50_C8P6J0 Putative uncharacterized protein n=1 Tax=Lactoba... 119 4e-26 UniRef50_D0WP21 Putative DNA polymerase III epsilon subunit n=1 ... 119 4e-26 UniRef50_A1TXA3 Exonuclease, RNase T and DNA polymerase III n=8 ... 119 5e-26 UniRef50_A5UUT9 DNA polymerase III, epsilon subunit n=4 Tax=Chlo... 119 5e-26 UniRef50_C4VNH6 DNA polymerase III n=4 Tax=Lactobacillus jenseni... 119 5e-26 UniRef50_Q2SPW2 Putative exonuclease n=2 Tax=Hahella chejuensis ... 119 5e-26 UniRef50_A3J795 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 119 5e-26 UniRef50_Q057S0 DNA polymerase III, e subunit n=1 Tax=Buchnera a... 119 6e-26 UniRef50_B9CLN3 Putative exonuclease, RNase T and DNA polymerase... 119 6e-26 UniRef50_Q4ZCJ2 ORF013 n=5 Tax=root RepID=Q4ZCJ2_9CAUD 119 6e-26 UniRef50_C9R9F3 DNA-directed DNA polymerase n=1 Tax=Ammonifex de... 118 7e-26 UniRef50_A4B904 DNA polymerase III subunit epsilon n=1 Tax=Reine... 118 7e-26 UniRef50_A0Y5B9 DNA polymerase III subunit epsilon n=1 Tax=Alter... 118 7e-26 UniRef50_D0IFC0 DNA polymerase III epsilon subunit n=1 Tax=Vibri... 118 8e-26 UniRef50_Q3SMK3 Exonuclease n=1 Tax=Thiobacillus denitrificans A... 118 9e-26 UniRef50_C9Z7X4 Putative exonuclease n=1 Tax=Streptomyces scabie... 118 9e-26 UniRef50_C4LI81 Putative uncharacterized protein n=1 Tax=Coryneb... 118 9e-26 UniRef50_UPI000185C325 putative DNA polymerase III epsilon subun... 118 1e-25 UniRef50_Q041D1 DNA polymerase III, alpha subunit (Gram-positive... 118 1e-25 UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Coryn... 118 1e-25 UniRef50_B3XRZ2 DNA polymerase III, epsilon subunit n=1 Tax=Lact... 118 1e-25 UniRef50_B6WSP3 Putative uncharacterized protein n=1 Tax=Desulfo... 118 1e-25 UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2... 118 1e-25 UniRef50_B0UN90 Exonuclease RNase T and DNA polymerase III n=3 T... 118 1e-25 UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase II... 118 1e-25 UniRef50_B8F0B3 Exonuclease RNase T and DNA polymerase III n=2 T... 118 1e-25 UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 2313... 118 1e-25 UniRef50_D0Z0S6 DNA polymerase III epsilon subunit n=1 Tax=Photo... 118 1e-25 UniRef50_UPI0001C41BCD exonuclease n=1 Tax=Methanobrevibacter ru... 118 1e-25 UniRef50_O67875 Putative uncharacterized protein n=1 Tax=Aquifex... 117 1e-25 UniRef50_A0JY37 Exonuclease, RNase T and DNA polymerase III n=4 ... 117 1e-25 UniRef50_C6X498 DNA polymerase III subunit epsilon n=1 Tax=Flavo... 117 2e-25 UniRef50_B7GKX3 Exonuclease n=2 Tax=Bacillaceae RepID=B7GKX3_ANOFW 117 2e-25 UniRef50_C7M082 Exonuclease RNase T and DNA polymerase III n=1 T... 117 2e-25 UniRef50_Q1MYK1 DNA polymerase III subunit epsilon n=2 Tax=Gamma... 117 2e-25 UniRef50_Q9ZX22 Gp57 n=2 Tax=unclassified Siphoviridae RepID=Q9Z... 117 2e-25 UniRef50_Q3B459 DNA polymerase III, epsilon subunit n=8 Tax=Chlo... 117 2e-25 UniRef50_Q1QZ77 Exonuclease n=1 Tax=Chromohalobacter salexigens ... 117 2e-25 UniRef50_D1W3Q1 DNA polymerase III subunit epsilon domain protei... 117 2e-25 UniRef50_C4XRC4 DNA polymerase III epsilon subunit n=1 Tax=Desul... 117 2e-25 UniRef50_D0WQJ6 Exonuclease, DNA polymerase III, epsilon subunit... 116 2e-25 UniRef50_C5WML0 Putative uncharacterized protein Sb01g037840 n=1... 116 3e-25 UniRef50_B2GAN1 DNA-directed DNA polymerase III epsilon subunit ... 116 3e-25 UniRef50_B5JTW6 Exonuclease, RNase T and DNA polymerase III n=1 ... 116 3e-25 UniRef50_Q0J9Z9 Os04g0623400 protein n=4 Tax=Oryza sativa RepID=... 116 3e-25 UniRef50_B9ZJP8 Exonuclease RNase T and DNA polymerase III n=1 T... 116 3e-25 UniRef50_D1BL33 Exonuclease RNase T and DNA polymerase III n=3 T... 116 3e-25 UniRef50_B6XU67 Putative uncharacterized protein n=2 Tax=Bifidob... 116 3e-25 UniRef50_Q2KXB5 Putative exonuclease n=4 Tax=Bordetella RepID=Q2... 116 3e-25 UniRef50_A3UR50 DNA polymerase III, epsilon chain n=6 Tax=Vibrio... 116 3e-25 UniRef50_A3Y5Y0 Exonuclease n=1 Tax=Marinomonas sp. MED121 RepID... 116 4e-25 UniRef50_C8WHL0 Exonuclease RNase T and DNA polymerase III n=1 T... 116 4e-25 UniRef50_Q5E1T7 DNA polymerase III, epsilon-subunit paralog (3' ... 116 4e-25 UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine m... 116 5e-25 UniRef50_C2BJB2 DNA polymerase III subunit epsilon n=1 Tax=Coryn... 116 5e-25 UniRef50_A1VJH5 Exonuclease, RNase T and DNA polymerase III n=8 ... 116 5e-25 UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins... 115 6e-25 UniRef50_C2PKV5 DNA polymerase III subunit epsilon n=1 Tax=Bacil... 115 6e-25 UniRef50_C2KP37 DNA polymerase III epsilon subunit n=3 Tax=Mobil... 115 7e-25 UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB5... 115 7e-25 UniRef50_Q47S15 Exonuclease n=3 Tax=Nocardiopsaceae RepID=Q47S15... 115 7e-25 UniRef50_Q1QYX2 Exonuclease n=2 Tax=Gammaproteobacteria RepID=Q1... 115 8e-25 UniRef50_C6HVS0 DNA polymerase III, epsilon subunit n=1 Tax=Lept... 115 8e-25 UniRef50_B7V8D9 Probable nuclease n=6 Tax=Pseudomonas aeruginosa... 115 8e-25 UniRef50_Q10MN9 Os03g0301400 protein n=4 Tax=Poaceae RepID=Q10MN... 115 9e-25 UniRef50_D0I9Y6 DNA polymerase III epsilon subunit n=1 Tax=Grimo... 115 9e-25 UniRef50_B6JP45 DNA polymerase III epsilon subunit n=17 Tax=Heli... 114 1e-24 UniRef50_D1C750 Exonuclease RNase T and DNA polymerase III n=1 T... 114 1e-24 UniRef50_C2D7T6 3'-5' exonuclease and CRISPR-associated Cas2 fam... 114 1e-24 UniRef50_C9KN36 Helicase, UvrD/REP/exonuclease family protein n=... 114 1e-24 UniRef50_B7A7M2 DNA-directed DNA polymerase n=3 Tax=Thermus RepI... 114 1e-24 UniRef50_A7GZ66 Nickel transport permease component NikD n=5 Tax... 114 1e-24 UniRef50_Q1QRC1 Exonuclease n=1 Tax=Nitrobacter hamburgensis X14... 114 1e-24 UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit ... 114 1e-24 UniRef50_Q9K697 BH3832 protein n=4 Tax=Bacillus RepID=Q9K697_BACHD 114 1e-24 UniRef50_D1C533 Exonuclease RNase T and DNA polymerase III n=1 T... 114 2e-24 UniRef50_Q2FLJ5 Exonuclease n=1 Tax=Methanospirillum hungatei JF... 114 2e-24 UniRef50_Q4A745 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 114 2e-24 UniRef50_B9F7W0 Putative uncharacterized protein n=3 Tax=Poaceae... 114 2e-24 UniRef50_Q1N3V9 Exonuclease n=1 Tax=Bermanella marisrubri RepID=... 114 2e-24 UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collins... 113 2e-24 UniRef50_A8VW12 S-adenosylmethionine decarboxylase related n=1 T... 113 2e-24 UniRef50_A7A5A0 Putative uncharacterized protein n=1 Tax=Bifidob... 113 2e-24 UniRef50_B5JQE7 Exonuclease, DNA polymerase III, epsilon subunit... 113 3e-24 UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D09... 113 3e-24 UniRef50_Q2NHS5 Predicted 3'-5' exonuclease n=1 Tax=Methanosphae... 113 3e-24 UniRef50_A7GA16 Exonuclease, DNA polymerase III, epsilon subunit... 113 3e-24 UniRef50_Q47ME2 Exonuclease n=1 Tax=Thermobifida fusca YX RepID=... 113 4e-24 UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostr... 113 4e-24 UniRef50_D1J1T2 Whole genome shotgun sequence of line PN40024, s... 113 4e-24 UniRef50_C9LHX7 Exonuclease n=1 Tax=Prevotella tannerae ATCC 512... 113 5e-24 UniRef50_D1U8F3 Exonuclease RNase T and DNA polymerase III n=1 T... 112 5e-24 UniRef50_C1YLW5 DNA polymerase III epsilon subunit-like 3'-5' ex... 112 5e-24 UniRef50_O64348 Gp41 n=3 Tax=root RepID=O64348_BPN15 112 5e-24 UniRef50_A6DK72 DNA polymerase III n=1 Tax=Lentisphaera araneosa... 112 6e-24 UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atop... 112 6e-24 UniRef50_A4IMY1 Putative uncharacterized protein n=1 Tax=Geobaci... 112 6e-24 UniRef50_Q11Z63 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 112 7e-24 UniRef50_Q05FQ3 DNA polymerase III epsilon subunit n=1 Tax=Candi... 112 7e-24 UniRef50_C6W9X5 Exonuclease RNase T and DNA polymerase III n=1 T... 112 7e-24 UniRef50_C0YRX4 Possible DNA-directed DNA polymerase III n=1 Tax... 112 7e-24 UniRef50_C6XW17 Exonuclease RNase T and DNA polymerase III n=74 ... 112 7e-24 UniRef50_UPI000185C08E DNA polymerase III epsilon subunit n=1 Ta... 112 8e-24 UniRef50_A6DBG1 DNA polymerase III subunit epsilon n=1 Tax=Camin... 111 8e-24 UniRef50_Q2Q0H1 Putative DNA polymerase type III, exonuclease do... 111 8e-24 UniRef50_A7I1F1 DNA polymerase III subunit epsilon n=1 Tax=Campy... 111 9e-24 UniRef50_C2G0Y5 DNA polymerase III, epsilon subunit n=8 Tax=Bact... 111 9e-24 UniRef50_A3EQH5 DNA polymerase III, epsilon subunit n=2 Tax=Lept... 111 9e-24 UniRef50_P41060 Uncharacterized exonuclease CP81 n=12 Tax=root R... 111 1e-23 UniRef50_Q3ILF6 Putative DNA polymerase, exonuclease activity n=... 111 1e-23 UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus... 111 1e-23 UniRef50_C8NL81 DNA polymerase III, epsilon subunit n=7 Tax=Cory... 111 1e-23 UniRef50_Q1QDN3 Exonuclease n=3 Tax=Psychrobacter RepID=Q1QDN3_P... 111 2e-23 UniRef50_Q04DG0 DNA polymerase III, epsilon subunit or related 3... 111 2e-23 UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group... 110 2e-23 UniRef50_B8J155 Exonuclease RNase T and DNA polymerase III n=1 T... 110 2e-23 UniRef50_B4TI94 Exonuclease n=2 Tax=root RepID=B4TI94_SALHS 110 2e-23 UniRef50_UPI0001BC4EA4 exonuclease n=4 Tax=Fusobacterium RepID=U... 110 2e-23 UniRef50_A5U937 DNA polymerase III subunit epsilon DnaQ n=20 Tax... 110 2e-23 UniRef50_Q30Q47 Exonuclease n=1 Tax=Sulfurimonas denitrificans D... 110 2e-23 UniRef50_D0JBJ5 DNA polymerase III subunit epsilon n=1 Tax=Blatt... 110 2e-23 UniRef50_A6DRG8 Putative exonuclease n=1 Tax=Lentisphaera araneo... 110 2e-23 UniRef50_A9RDT8 Predicted protein n=6 Tax=Eukaryota RepID=A9RDT8... 110 2e-23 UniRef50_C5SA67 Exonuclease RNase T and DNA polymerase III n=1 T... 110 2e-23 UniRef50_C6P477 DNA polymerase III, epsilon subunit n=1 Tax=Side... 110 2e-23 UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 T... 110 3e-23 UniRef50_C9PB04 DNA polymerase III epsilon subunit n=1 Tax=Vibri... 110 3e-23 UniRef50_Q7MCI1 DNA polymerase III, epsilon subunit n=6 Tax=Vibr... 110 3e-23 UniRef50_Q47TJ3 DNA polymerase III, epsilon subunit n=10 Tax=Act... 109 3e-23 UniRef50_A6W3F5 Exonuclease RNase T and DNA polymerase III n=2 T... 109 3e-23 UniRef50_Q2BJ82 DNA polymerase III subunit epsilon n=1 Tax=Neptu... 109 4e-23 UniRef50_C5YG62 Putative uncharacterized protein Sb06g028980 n=1... 109 4e-23 UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales... 109 4e-23 UniRef50_A4WYE4 Transposase and inactivated derivatives-like pro... 109 4e-23 UniRef50_Q89MS5 Blr4117 protein n=1 Tax=Bradyrhizobium japonicum... 109 4e-23 UniRef50_C7RVE9 Exonuclease RNase T and DNA polymerase III n=1 T... 109 4e-23 UniRef50_Q6LGI0 Putative DNA polymerase III n=1 Tax=Photobacteri... 109 4e-23 UniRef50_D1XX28 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1XX2... 109 4e-23 UniRef50_Q2QCR8 Putative uncharacterized protein n=1 Tax=Pseudom... 109 5e-23 UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate divisio... 109 5e-23 UniRef50_C7LT45 Exonuclease RNase T and DNA polymerase III n=4 T... 109 5e-23 UniRef50_Q682U6 Putative uncharacterized protein At5g26940 n=3 T... 109 6e-23 UniRef50_Q6UAU3 Gp39 n=1 Tax=Klebsiella phage phiKO2 RepID=Q6UAU... 109 6e-23 UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=... 109 7e-23 UniRef50_D2Q9U9 DNA polymerase III, epsilon subunit n=2 Tax=Bifi... 108 7e-23 UniRef50_D2ATQ8 DNA polymerase III epsilon subunit and related 3... 108 7e-23 UniRef50_C1XFI0 DNA polymerase III epsilon subunit-like 3'-5' ex... 108 7e-23 UniRef50_A1S5S6 DNA polymerase III epsilon subunit-related 3'-5'... 108 7e-23 UniRef50_Q8NQY3 DNA polymerase III epsilon subunit and related 3... 108 7e-23 UniRef50_D1VY91 UvrD/REP helicase n=1 Tax=Prevotella timonensis ... 108 7e-23 UniRef50_C8WSI6 Exonuclease RNase T and DNA polymerase III n=2 T... 108 8e-23 UniRef50_C1YMP7 DNA polymerase III epsilon subunit-like 3'-5' ex... 108 9e-23 UniRef50_A4C923 Putative DNA polymerase, exonuclease activity n=... 108 9e-23 UniRef50_Q854A2 Gp164 n=1 Tax=Mycobacterium phage Omega RepID=Q8... 108 9e-23 UniRef50_D0B757 DNA polymerase III n=38 Tax=Brucellaceae RepID=D... 108 1e-22 UniRef50_C5V7D5 Exonuclease RNase T and DNA polymerase III n=1 T... 108 1e-22 UniRef50_UPI0001B53E3D DNA polymerase III subunit epsilon n=1 Ta... 108 1e-22 UniRef50_A1TZ29 DNA polymerase III, epsilon subunit n=3 Tax=Mari... 108 1e-22 UniRef50_C1D0R4 Putative DNA-directed DNA polymerase (DNA polyme... 108 1e-22 UniRef50_C1SJH8 DNA polymerase III epsilon subunit-like 3'-5' ex... 108 1e-22 UniRef50_A3WQA1 3'-5' exonuclease n=1 Tax=Idiomarina baltica OS1... 108 1e-22 UniRef50_C7U038 Putative uncharacterized protein n=1 Tax=Ostreoc... 108 1e-22 UniRef50_B6BKX7 Exonuclease n=1 Tax=Campylobacterales bacterium ... 108 1e-22 UniRef50_D0U233 Putative exonuclease n=1 Tax=Clavibacter phage C... 108 1e-22 UniRef50_C9PT90 Putative uncharacterized protein n=1 Tax=Prevote... 108 1e-22 UniRef50_B5ETC4 DNA polymerase III, epsilon chain n=2 Tax=Vibrio... 108 1e-22 UniRef50_D0I3G5 Putative exonuclease n=1 Tax=Grimontia hollisae ... 107 2e-22 UniRef50_C0W0V1 DNA polymerase III subunit epsilon n=1 Tax=Actin... 107 2e-22 UniRef50_Q2RWQ8 Exonuclease n=1 Tax=Rhodospirillum rubrum ATCC 1... 107 2e-22 UniRef50_D1BPK1 UvrD/REP helicase n=3 Tax=Veillonella RepID=D1BP... 107 2e-22 UniRef50_C9LN05 DNA polymerase III PolC-type n=1 Tax=Dialister i... 107 2e-22 UniRef50_A3QFI6 Exonuclease, RNase T and DNA polymerase III n=5 ... 107 2e-22 UniRef50_A8L7F0 Exonuclease RNase T and DNA polymerase III n=1 T... 107 2e-22 UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammapr... 106 3e-22 UniRef50_D1W6A9 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1W6A... 106 3e-22 UniRef50_B1BYN4 Putative uncharacterized protein n=1 Tax=Clostri... 106 3e-22 UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae ... 106 3e-22 UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 T... 106 3e-22 UniRef50_D2VB97 Predicted protein n=1 Tax=Naegleria gruberi RepI... 106 3e-22 UniRef50_Q3JDE1 Exonuclease n=4 Tax=Gammaproteobacteria RepID=Q3... 106 3e-22 UniRef50_Q6MC14 Putative DNA polymerase III, epsilon chain, mutD... 106 4e-22 UniRef50_UPI0001AF0A70 hypothetical protein AbauAB_10367 n=1 Tax... 106 4e-22 UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L... 106 4e-22 UniRef50_A4A420 Exonuclease family n=3 Tax=unclassified Gammapro... 106 4e-22 UniRef50_B4WXR6 Exonuclease superfamily n=1 Tax=Alcanivorax sp. ... 106 5e-22 UniRef50_A1SRL7 Exonuclease, RNase T and DNA polymerase III n=1 ... 106 5e-22 UniRef50_C0QMS3 Predicted type III DNA polymerase PolC n=1 Tax=D... 106 5e-22 UniRef50_Q31GK8 Exonuclease n=8 Tax=Bacteria RepID=Q31GK8_THICR 106 5e-22 UniRef50_C9S192 Exonuclease RNase T and DNA polymerase III n=6 T... 106 5e-22 UniRef50_A5FFY1 Exonuclease, RNase T and DNA polymerase III n=1 ... 106 5e-22 UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID... 106 5e-22 UniRef50_B1YF69 Exonuclease RNase T and DNA polymerase III n=2 T... 106 5e-22 UniRef50_A4HKS0 Exonuclease-like protein (Dna polymerase iii eps... 106 6e-22 UniRef50_A0JYL8 DNA polymerase III, epsilon subunit n=8 Tax=Micr... 105 6e-22 UniRef50_A7HLA2 DNA polymerase III, epsilon subunit n=3 Tax=Ther... 105 6e-22 UniRef50_B8HX99 Exonuclease RNase T and DNA polymerase III n=2 T... 105 7e-22 UniRef50_C6X5Z0 DNA polymerase III alpha subunit n=1 Tax=Flavoba... 105 7e-22 UniRef50_D1Y3R1 Putative DNA polymerase III PolC-type (PolIII) n... 105 7e-22 UniRef50_A3HVK4 DNA polymerase III, epsilon subunit n=1 Tax=Algo... 105 7e-22 UniRef50_B9NP01 Exonuclease n=1 Tax=Rhodobacteraceae bacterium K... 105 8e-22 UniRef50_B9YE07 Putative uncharacterized protein n=1 Tax=Holdema... 105 8e-22 UniRef50_Q6VY79 Putative uncharacterized protein n=1 Tax=Strepto... 105 8e-22 UniRef50_Q4UJH2 DNA polymerase III, epsilon subunit-like protein... 105 9e-22 UniRef50_C8PWB9 DNA polymerase III subunit epsilon n=1 Tax=Enhyd... 104 1e-21 UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteo... 104 1e-21 UniRef50_C0GGY8 Exonuclease RNase T and DNA polymerase III n=1 T... 104 1e-21 UniRef50_Q04A97 DNA polymerase III, epsilon subunit related 3'-5... 104 1e-21 UniRef50_Q0VMJ4 Nuclease, putative n=1 Tax=Alcanivorax borkumens... 104 1e-21 UniRef50_Q7NC15 PolC n=1 Tax=Mycoplasma gallisepticum RepID=Q7NC... 104 1e-21 UniRef50_A0KJY7 DNA polymerase III, epsilon subunit n=2 Tax=Aero... 104 1e-21 UniRef50_D1PSL1 Putative DNA polymerase III, epsilon subunit n=1... 104 1e-21 UniRef50_B9L7I4 Exonuclease family n=2 Tax=Nautiliaceae RepID=B9... 104 2e-21 UniRef50_C9LQ99 Exonuclease n=1 Tax=Dialister invisus DSM 15470 ... 104 2e-21 UniRef50_UPI0001C31300 Exonuclease RNase T and DNA polymerase II... 104 2e-21 UniRef50_Q4V274 Possible exonuclease n=3 Tax=Bacillus cereus Rep... 104 2e-21 UniRef50_C0WKD3 DNA polymerase III epsilon subunit n=5 Tax=Coryn... 104 2e-21 UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacte... 104 2e-21 UniRef50_UPI0001B52926 exonuclease, RNase T and DNA polymerase I... 104 2e-21 UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitroso... 104 2e-21 UniRef50_C2S1I6 DnaQ family exonuclease/DinG family helicase n=3... 104 2e-21 UniRef50_Q47RH7 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 103 2e-21 UniRef50_A7HF37 Exonuclease RNase T and DNA polymerase III n=10 ... 103 2e-21 UniRef50_C5BKW5 Putative exonuclease n=1 Tax=Teredinibacter turn... 103 2e-21 UniRef50_Q8EDA7 Exonuclease n=1 Tax=Shewanella oneidensis RepID=... 103 2e-21 UniRef50_B2A6Q7 Exonuclease RNase T and DNA polymerase III n=1 T... 103 2e-21 UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacte... 103 2e-21 UniRef50_B0G161 DNA polymerase III, epsilon subunit n=1 Tax=Dict... 103 3e-21 UniRef50_B1JN65 Exonuclease RNase T and DNA polymerase III n=4 T... 103 3e-21 UniRef50_D2MNZ8 Exonuclease n=1 Tax=Bulleidia extructa W1219 Rep... 103 3e-21 UniRef50_B0PH29 Putative uncharacterized protein n=1 Tax=Anaerot... 103 3e-21 UniRef50_C5NYM3 ATP-dependent helicase DinG homolog n=1 Tax=Geme... 103 3e-21 UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3X... 103 3e-21 UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellu... 103 4e-21 UniRef50_Q2W5M2 DNA polymerase III, epsilon subunit and related ... 103 4e-21 UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas ... 103 4e-21 UniRef50_Q8KQK8 DNA polymerase III epsilon subunit (Fragment) n=... 103 5e-21 UniRef50_Q6A708 Putative DNA polymerase III epsilon subunit (Exo... 102 5e-21 UniRef50_C5WTF0 Putative uncharacterized protein Sb01g029940 n=3... 102 5e-21 UniRef50_A6CY65 DNA polymerase III, epsilon subunit n=1 Tax=Vibr... 102 6e-21 UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Ente... 102 6e-21 UniRef50_C0WBN5 Putative uncharacterized protein n=1 Tax=Acidami... 102 6e-21 UniRef50_B2K016 Exonuclease RNase T and DNA polymerase III n=2 T... 102 6e-21 UniRef50_C3WAY8 Predicted protein n=1 Tax=Fusobacterium mortifer... 102 6e-21 UniRef50_Q68BL2 DNA helicase RecG n=2 Tax=cellular organisms Rep... 102 6e-21 UniRef50_A7K3S7 DNA polymerase III, alpha subunit n=8 Tax=Vibrio... 102 6e-21 UniRef50_A1TI45 DNA-directed DNA polymerase n=4 Tax=Burkholderia... 102 7e-21 UniRef50_A6VT55 Exonuclease RNase T and DNA polymerase III n=1 T... 101 9e-21 UniRef50_Q1ZEA2 DNA polymerase III, epsilon chain n=1 Tax=Psychr... 101 9e-21 UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter as... 101 1e-20 UniRef50_C1GVI3 RNA exonuclease n=1 Tax=Paracoccidioides brasili... 101 1e-20 UniRef50_UPI0001AEBC71 putative DNA polymerase, exonuclease acti... 101 1e-20 UniRef50_D1HJW3 Whole genome shotgun sequence of line PN40024, s... 101 1e-20 UniRef50_B4RRS4 Putative DNA polymerase, exonuclease activity n=... 101 1e-20 UniRef50_A2PLZ2 Gp39 n=2 Tax=Vibrio cholerae RepID=A2PLZ2_VIBCH 101 1e-20 UniRef50_C6XJL2 Exonuclease RNase T and DNA polymerase III n=1 T... 101 1e-20 UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepI... 101 1e-20 UniRef50_Q084B5 Exonuclease, RNase T and DNA polymerase III n=8 ... 101 1e-20 UniRef50_A9CIB7 DNA polymerase III, epsilon subunit n=4 Tax=Alph... 101 2e-20 UniRef50_A7SLH3 Predicted protein n=1 Tax=Nematostella vectensis... 101 2e-20 UniRef50_Q5QUI3 3'-5' exonuclease n=1 Tax=Idiomarina loihiensis ... 101 2e-20 UniRef50_C8PWE0 Exonuclease, Ycg4D n=1 Tax=Enhydrobacter aerosac... 101 2e-20 UniRef50_UPI0001B4C718 DNA polymerase III subunit epsilon n=1 Ta... 101 2e-20 UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinel... 101 2e-20 UniRef50_Q0CHU1 RNA exonuclease 4 n=5 Tax=Eukaryota RepID=Q0CHU1... 100 2e-20 UniRef50_B9FK06 Putative uncharacterized protein n=1 Tax=Oryza s... 100 2e-20 UniRef50_C6JNE1 Exonuclease RNase T and DNA polymerase III n=2 T... 100 2e-20 UniRef50_D0B846 Exonuclease n=51 Tax=Alphaproteobacteria RepID=D... 100 3e-20 UniRef50_B0UJH8 Exonuclease RNase T and DNA polymerase III n=2 T... 100 3e-20 UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus cap... 100 3e-20 UniRef50_Q4WHF8 RNA exonuclease 4 n=47 Tax=Fungi/Metazoa group R... 99 3e-20 UniRef50_C2UN60 Exonuclease n=4 Tax=Bacillus cereus group RepID=... 99 3e-20 UniRef50_B2WGV1 RNA exonuclease 4 n=2 Tax=Pleosporineae RepID=B2... 99 3e-20 UniRef50_Q12PE3 Ribonuclease T n=157 Tax=Gammaproteobacteria Rep... 99 3e-20 UniRef50_B0UVN4 Exonuclease RNase T and DNA polymerase III n=2 T... 99 4e-20 UniRef50_C0VTT8 DNA polymerase III epsilon subunit (Exonuclease)... 99 4e-20 UniRef50_C8NL35 DNA polymerase III, epsilon subunit n=20 Tax=Cor... 99 4e-20 UniRef50_C1E3S8 Exonuclease (Fragment) n=1 Tax=Micromonas sp. RC... 99 4e-20 UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacte... 99 4e-20 UniRef50_Q2S3Z9 Exonuclease, putative n=1 Tax=Salinibacter ruber... 100 4e-20 UniRef50_Q1J224 Exonuclease domain in DNA-polymerase alpha and e... 100 4e-20 UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 100 4e-20 UniRef50_A0Y7J9 Putative exonuclease n=1 Tax=marine gamma proteo... 100 4e-20 UniRef50_B9ZRI9 Ribonuclease T n=3 Tax=Gammaproteobacteria RepID... 100 5e-20 UniRef50_D1H2G0 Whole genome shotgun sequence of line PN40024, s... 100 5e-20 UniRef50_A4TY99 DNA polymerase III, epsilon subunit and related ... 100 5e-20 UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacter... 99 6e-20 UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 99 6e-20 UniRef50_A4B9Q7 Putative DNA polymerase, exonuclease activity n=... 99 6e-20 UniRef50_B7GKP6 3'-5' exonuclease related protein n=1 Tax=Anoxyb... 99 7e-20 UniRef50_D0ZEQ2 Orf81 bacteriophage 186 n=1 Tax=Edwardsiella tar... 99 7e-20 UniRef50_Q211V1 Exonuclease n=2 Tax=Rhizobiales RepID=Q211V1_RHOPB 99 7e-20 UniRef50_A1WUZ8 Ribonuclease T n=10 Tax=Gammaproteobacteria RepI... 99 8e-20 UniRef50_B9KV46 Exonuclease n=1 Tax=Rhodobacter sphaeroides KD13... 99 8e-20 UniRef50_B8DPI8 Exonuclease RNase T and DNA polymerase III n=1 T... 99 9e-20 UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium... 99 9e-20 UniRef50_C9PFC2 DNA polymerase III epsilon subunit n=2 Tax=Vibri... 98 9e-20 UniRef50_A4AJM3 DNA polymerase III subunit epsilon n=4 Tax=Actin... 98 1e-19 UniRef50_B6U6C6 Exonuclease n=1 Tax=Zea mays RepID=B6U6C6_MAIZE 98 1e-19 UniRef50_A7B402 Putative uncharacterized protein n=1 Tax=Ruminoc... 98 1e-19 UniRef50_Q9APT6 DNA polymerase III n=1 Tax=Pseudomonas aeruginos... 98 1e-19 UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochm... 98 2e-19 UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xa... 98 2e-19 UniRef50_C4LJG9 Putative DNA polymerase III epsilon subunit n=1 ... 98 2e-19 UniRef50_Q15YI0 Exonuclease, RNase T and DNA polymerase III n=1 ... 98 2e-19 UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacte... 98 2e-19 UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidico... 97 2e-19 UniRef50_C1AA06 Exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27... 97 2e-19 UniRef50_Q4E271 Exonuclease, putative n=1 Tax=Trypanosoma cruzi ... 97 2e-19 UniRef50_A9KDF1 Ribonuclease T n=5 Tax=Coxiella burnetii RepID=A... 97 3e-19 UniRef50_D0JAY7 DNA polymerase III subunit alpha n=2 Tax=Blattab... 97 3e-19 UniRef50_A4HVE4 Mitochondrial DNA polymerase I protein B, putati... 97 3e-19 UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 97 3e-19 UniRef50_D2B9E4 DNA-directed DNA polymerase n=1 Tax=Streptospora... 97 3e-19 UniRef50_Q9HIG3 Putative uncharacterized protein Ta1376 n=1 Tax=... 97 3e-19 UniRef50_A6GQ42 DNA polymerase III subunit epsilon n=1 Tax=Limno... 96 4e-19 UniRef50_B9Z8P9 Exonuclease RNase T and DNA polymerase III n=3 T... 96 4e-19 UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=... 96 4e-19 UniRef50_B3EM65 Exonuclease RNase T and DNA polymerase III n=1 T... 96 4e-19 UniRef50_A8QYU9 DNA polymerase III subunit epsilon n=3 Tax=Legio... 96 4e-19 UniRef50_B4SAW0 Exonuclease RNase T and DNA polymerase III n=2 T... 96 4e-19 UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteria... 96 4e-19 UniRef50_B4VF18 DNA polymerase III subunit epsilon n=9 Tax=Strep... 96 5e-19 UniRef50_A9VVI2 Exonuclease RNase T and DNA polymerase III n=1 T... 96 5e-19 UniRef50_C5YXX8 Putative uncharacterized protein Sb09g000300 n=1... 96 5e-19 UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus ... 96 6e-19 UniRef50_B8H5Y8 DNA polymerase III epsilon-like protein n=2 Tax=... 96 6e-19 UniRef50_B2UMX8 Exonuclease RNase T and DNA polymerase III n=1 T... 96 6e-19 UniRef50_B5GC70 DNA polymerase III n=1 Tax=Streptomyces sp. SPB7... 96 6e-19 UniRef50_C5V7N5 Exonuclease RNase T and DNA polymerase III n=1 T... 96 7e-19 UniRef50_A7B9H5 Putative uncharacterized protein n=1 Tax=Actinom... 96 7e-19 UniRef50_C0VTN4 DNA polymerase III, epsilon subunit n=3 Tax=Cory... 96 7e-19 UniRef50_C5BZW8 Exonuclease RNase T and DNA polymerase III n=6 T... 96 7e-19 UniRef50_UPI000038277F COG0847: DNA polymerase III, epsilon subu... 95 8e-19 UniRef50_B9JNT5 Polymerase epsilon subunit protein n=1 Tax=Agrob... 95 8e-19 UniRef50_A1U7Q5 Exonuclease, RNase T and DNA polymerase III n=1 ... 95 8e-19 UniRef50_A6GP03 Exonuclease n=1 Tax=Limnobacter sp. MED105 RepID... 95 9e-19 UniRef50_Q01D40 Xpmc2 protein (ISS) n=2 Tax=Mamiellales RepID=Q0... 95 9e-19 UniRef50_D1N0X4 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 95 1e-18 UniRef50_Q7S9B7 RNA exonuclease 4 n=1 Tax=Neurospora crassa RepI... 95 1e-18 UniRef50_Q4IEV5 RNA exonuclease 4 n=6 Tax=Sordariomyceta RepID=R... 95 1e-18 UniRef50_D1N3T8 Exonuclease RNase T and DNA polymerase III n=1 T... 95 1e-18 UniRef50_Q1WDI5 DNA polymerase III n=5 Tax=root RepID=Q1WDI5_9CAUD 95 1e-18 UniRef50_C0NP89 RNA exonuclease n=11 Tax=Onygenales RepID=C0NP89... 95 1e-18 UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=... 95 1e-18 UniRef50_Q47UC9 Exonuclase n=2 Tax=Alteromonadales RepID=Q47UC9_... 95 1e-18 UniRef50_Q0F2C4 DNA polymerase III subunit epsilon n=1 Tax=Marip... 95 2e-18 UniRef50_Q6ML77 DNA polymerase III polC-type n=1 Tax=Bdellovibri... 95 2e-18 UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T... 95 2e-18 UniRef50_Q5NWQ5 Putative exonuclease n=1 Tax=Aromatoleum aromati... 94 2e-18 UniRef50_Q08237 RNA exonuclease 4 n=12 Tax=Saccharomycetaceae Re... 94 2e-18 UniRef50_D1B7G9 Exonuclease RNase T and DNA polymerase III n=1 T... 94 2e-18 UniRef50_B5K1P1 Exonuclease n=4 Tax=Octadecabacter antarcticus R... 94 2e-18 UniRef50_Q0IXT1 Os10g0407500 protein n=5 Tax=Magnoliophyta RepID... 94 2e-18 UniRef50_UPI0000E474E4 PREDICTED: hypothetical protein n=1 Tax=S... 94 2e-18 UniRef50_A2CAY4 Possible DNA polymerase III, epsilon subunit n=1... 94 2e-18 UniRef50_A1RGY9 Exonuclease, RNase T and DNA polymerase III n=20... 94 2e-18 UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacte... 94 2e-18 UniRef50_Q0EWR1 Putative uncharacterized protein n=1 Tax=Maripro... 94 3e-18 UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellul... 94 3e-18 UniRef50_A7RWU1 Predicted protein n=2 Tax=Nematostella vectensis... 93 3e-18 UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphapr... 93 3e-18 UniRef50_Q4D4F6 Exonuclease, putative n=1 Tax=Trypanosoma cruzi ... 93 3e-18 UniRef50_C6MU49 Exonuclease RNase T and DNA polymerase III n=1 T... 93 4e-18 UniRef50_B5X4Q1 RNA exonuclease 4 n=1 Tax=Salmo salar RepID=B5X4... 93 4e-18 UniRef50_A1ZEC3 DNA polymerase III alpha subunit n=2 Tax=Bactero... 93 4e-18 UniRef50_C4QBU0 Rex4-related (Xpmc2) n=1 Tax=Schistosoma mansoni... 93 4e-18 UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae... 93 5e-18 UniRef50_D0KYH5 Ribonuclease T n=2 Tax=Gammaproteobacteria RepID... 93 5e-18 UniRef50_B8NVL3 RNA exonuclease, putative n=2 Tax=Aspergillus Re... 93 5e-18 UniRef50_UPI000194CE9E PREDICTED: hypothetical protein n=1 Tax=T... 93 5e-18 UniRef50_C1BLC6 Interferon-stimulated 20 kDa exonuclease-like 2 ... 93 6e-18 UniRef50_UPI00015B42FE PREDICTED: hypothetical protein n=1 Tax=N... 92 7e-18 UniRef50_A4RTZ6 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 92 7e-18 UniRef50_C0VS85 Putative uncharacterized protein n=3 Tax=Coryneb... 92 7e-18 UniRef50_C5CA98 Exonuclease, DNA polymerase III, epsilon subunit... 92 8e-18 UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacter... 92 8e-18 UniRef50_D2QID7 Exonuclease RNase T and DNA polymerase III n=2 T... 92 8e-18 UniRef50_A1VSD3 Exonuclease, RNase T and DNA polymerase III n=1 ... 92 9e-18 UniRef50_C0VSD3 DNA polymerase III subunit epsilon n=3 Tax=Actin... 92 9e-18 UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID... 92 1e-17 UniRef50_D1ZK43 Whole genome shotgun sequence assembly, scaffold... 92 1e-17 UniRef50_B9J6H2 Bacteriophage 186 Orf81-like protein n=1 Tax=Bac... 91 1e-17 UniRef50_Q9FLJ5 Exonuclease-like protein n=3 Tax=Arabidopsis tha... 91 1e-17 UniRef50_C7X7A5 Exonuclease n=4 Tax=Bacteroidales RepID=C7X7A5_9... 91 1e-17 UniRef50_Q8DQ14 DNA polymerase III, epsilon chain n=57 Tax=Strep... 91 1e-17 UniRef50_B0KHB9 Exonuclease RNase T and DNA polymerase III n=3 T... 91 1e-17 UniRef50_C9P6S7 DNA polymerase III epsilon subunit n=1 Tax=Vibri... 91 2e-17 UniRef50_UPI0000E11812 exonuclease, RNase T and DNA polymerase I... 91 2e-17 UniRef50_A5Z7C9 Putative uncharacterized protein n=1 Tax=Eubacte... 91 2e-17 UniRef50_UPI0001C34DC4 sporulation inhibitor KapD n=1 Tax=Clostr... 91 2e-17 UniRef50_Q9FLR0 Exonuclease-like protein n=4 Tax=Magnoliophyta R... 91 2e-17 UniRef50_A3W6U6 Probable DNA polymerase III (Epsilon chain) prot... 91 2e-17 UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergi... 91 2e-17 UniRef50_UPI000169A625 DNA polymerase III, epsilon subunit n=1 T... 91 2e-17 UniRef50_A3JK24 DNA polymerase III subunit epsilon n=1 Tax=Marin... 91 2e-17 UniRef50_A2C180 Possible DNA polymerase III, epsilon subunit n=2... 91 2e-17 UniRef50_C8NWG5 DNA polymerase III, epsilon subunit n=1 Tax=Cory... 91 2e-17 UniRef50_C6DYG6 Exonuclease RNase T and DNA polymerase III n=3 T... 91 2e-17 UniRef50_A0R7K3 Exonuclease, RNase T and DNA polymerase III n=1 ... 91 2e-17 UniRef50_C1YH96 DNA polymerase III epsilon subunit-like 3'-5' ex... 91 2e-17 UniRef50_B9KC73 Putative uncharacterized protein n=1 Tax=Campylo... 90 3e-17 UniRef50_Q31EW8 Putative uncharacterized protein n=1 Tax=Thiomic... 90 3e-17 UniRef50_Q28W63 Exonuclease n=5 Tax=Rhodobacterales RepID=Q28W63... 90 3e-17 UniRef50_D2EFA4 Exonuclease RNase T and DNA polymerase III n=1 T... 90 3e-17 UniRef50_C2CUZ9 DNA polymerase III subunit epsilon n=1 Tax=Gardn... 90 4e-17 UniRef50_UPI0001AEF4FD exonuclease RNase T and DNA polymerase II... 90 4e-17 UniRef50_A9CEN2 Polymerase epsilon subunit n=5 Tax=cellular orga... 90 4e-17 UniRef50_C9YB77 Putative uncharacterized protein n=1 Tax=Curviba... 90 4e-17 UniRef50_A7ILL5 Exonuclease RNase T and DNA polymerase III n=1 T... 90 4e-17 UniRef50_B5MA46 Putative DNA polymerase III, epsilon subunit n=5... 90 4e-17 UniRef50_Q0SR27 Exonuclease family protein n=9 Tax=Clostridium p... 90 4e-17 UniRef50_Q934V3 Putative uncharacterized protein HCM2.0114c n=1 ... 90 5e-17 UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax... 90 5e-17 UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae ... 90 5e-17 UniRef50_Q6BIK6 RNA exonuclease 4 n=4 Tax=Saccharomycetaceae Rep... 90 5e-17 UniRef50_Q8QNF3 EsV-1-126 n=1 Tax=Ectocarpus siliculosus virus 1... 90 5e-17 UniRef50_D1B1G8 Exonuclease RNase T and DNA polymerase III n=1 T... 90 5e-17 UniRef50_A9M0U8 DNA polymerase III, epsilon subunit n=9 Tax=Neis... 89 6e-17 UniRef50_UPI000044938D PREDICTED: hypothetical protein n=2 Tax=G... 89 6e-17 UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsi... 89 6e-17 UniRef50_C7Z8F6 Predicted protein n=1 Tax=Nectria haematococca m... 89 6e-17 UniRef50_B9RLV7 Exonuclease, putative n=1 Tax=Ricinus communis R... 89 7e-17 UniRef50_A2BVT4 Possible DNA polymerase III, epsilon subunit n=8... 89 7e-17 UniRef50_C7NAB6 Exonuclease RNase T and DNA polymerase III n=4 T... 89 7e-17 UniRef50_A3KH10 Interferon stimulated exonuclease gene 20-like 2... 89 8e-17 UniRef50_C7JDE1 DNA polymerase III exonuclease epsilon subunit l... 89 9e-17 UniRef50_A8SRC5 Putative uncharacterized protein n=2 Tax=Clostri... 89 9e-17 UniRef50_Q2S4M8 Exonuclease, putative n=1 Tax=Salinibacter ruber... 88 1e-16 UniRef50_A0B4X4 Exonuclease, RNase T and DNA polymerase III n=2 ... 88 1e-16 UniRef50_Q06GG8 Putative exonuclease n=2 Tax=Rhodococcus RepID=Q... 88 1e-16 UniRef50_D2RA75 Exonuclease n=1 Tax=Gardnerella vaginalis 409-05... 88 1e-16 UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp.... 88 1e-16 UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM 88 1e-16 UniRef50_B8GP22 Exonuclease n=1 Tax=Thioalkalivibrio sp. HL-EbGR... 88 1e-16 UniRef50_UPI000155D9F8 PREDICTED: similar to Interferon-stimulat... 88 1e-16 UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2... 88 1e-16 UniRef50_Q7PQ12 AGAP005050-PA n=1 Tax=Anopheles gambiae RepID=Q7... 88 1e-16 UniRef50_C5L3L2 RNA exonuclease, putative n=1 Tax=Perkinsus mari... 88 1e-16 UniRef50_Q9H9L3 Interferon-stimulated 20 kDa exonuclease-like 2 ... 88 1e-16 UniRef50_Q4PER6 RNA exonuclease 4 n=2 Tax=Eukaryota RepID=REXO4_... 88 2e-16 UniRef50_C1DKH9 DNA polymerase III, epsilon subunit n=17 Tax=Pse... 88 2e-16 UniRef50_Q5TYH8 AGAP012826-PA n=2 Tax=Culicidae RepID=Q5TYH8_ANOGA 88 2e-16 UniRef50_C6QF81 Exonuclease RNase T and DNA polymerase III n=1 T... 88 2e-16 UniRef50_A6QIL2 Phage exonuclease n=19 Tax=root RepID=A6QIL2_STAAE 88 2e-16 UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 ... 87 2e-16 UniRef50_Q6DEW6 RNA exonuclease 4 n=3 Tax=Euteleostomi RepID=REX... 87 2e-16 UniRef50_B6FR49 Putative uncharacterized protein n=2 Tax=Clostri... 87 2e-16 UniRef50_C0VV73 DNA polymerase III epsilon subunit n=2 Tax=Coryn... 87 2e-16 UniRef50_C1BVW9 RNA exonuclease 4 n=2 Tax=Caligidae RepID=C1BVW9... 87 3e-16 UniRef50_C3Z6U1 Putative uncharacterized protein n=1 Tax=Branchi... 87 3e-16 UniRef50_B1WBN4 REX4, RNA exonuclease 4 homolog (S. cerevisiae) ... 87 3e-16 UniRef50_A9HQT1 Exonuclease n=3 Tax=Proteobacteria RepID=A9HQT1_... 87 3e-16 UniRef50_B8HHY2 Exonuclease RNase T and DNA polymerase III n=1 T... 87 3e-16 UniRef50_Q2B6U8 DNA polymerase III subunit epsilon n=1 Tax=Bacil... 87 3e-16 UniRef50_B9KY42 Putative DNA polymerase III, epsilon chain (EC )... 87 4e-16 UniRef50_Q9VUC3 CG6833 n=1 Tax=Drosophila melanogaster RepID=Q9V... 87 4e-16 UniRef50_A5UAG1 Ribonuclease T n=251 Tax=Proteobacteria RepID=RN... 87 4e-16 UniRef50_C4NV58 Exonuclease family protein n=11 Tax=Bacteria Rep... 87 4e-16 UniRef50_B2V1C6 Exonuclease, RNase T and DNA polymerase III n=5 ... 86 4e-16 UniRef50_C9KKS1 Putative DNA polymerase III subunit epsilon n=1 ... 86 4e-16 UniRef50_O94375 RNA exonuclease 4 n=1 Tax=Schizosaccharomyces po... 86 4e-16 UniRef50_Q1NYP0 DNA polymerase III alpha subunit (Fragment) n=4 ... 86 4e-16 UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 86 4e-16 UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 ... 86 4e-16 UniRef50_Q63ZS9 LOC494737 protein n=5 Tax=Euteleostomi RepID=Q63... 86 5e-16 UniRef50_Q9GZR2 RNA exonuclease 4 n=22 Tax=Eukaryota RepID=REXO4... 86 5e-16 UniRef50_UPI000192786A PREDICTED: similar to predicted protein n... 86 5e-16 UniRef50_C5R9G6 Putative uncharacterized protein n=1 Tax=Weissel... 86 5e-16 UniRef50_D0LL62 Exonuclease RNase T and DNA polymerase III n=1 T... 86 5e-16 UniRef50_A4FXS5 Exonuclease, RNase T and DNA polymerase III n=5 ... 86 5e-16 UniRef50_C6BPA9 Exonuclease RNase T and DNA polymerase III n=2 T... 86 5e-16 UniRef50_Q4Q4Z6 Exonuclease-like protein (Dna polymerase iii eps... 86 5e-16 UniRef50_Q5NUS9 Putative exonuclease n=1 Tax=Streptomyces albulu... 86 5e-16 UniRef50_UPI000180BB0F PREDICTED: similar to MGC131088 protein n... 86 5e-16 UniRef50_A8JCL9 Predicted protein n=2 Tax=Viridiplantae RepID=A8... 86 5e-16 UniRef50_UPI0001925D67 PREDICTED: similar to Interferon-stimulat... 86 6e-16 UniRef50_C0W5G3 Possible DNA polymerase III subunit epsilon (Fra... 86 6e-16 UniRef50_D1AX10 Exonuclease RNase T and DNA polymerase III n=1 T... 86 7e-16 UniRef50_Q7F186 Os08g0377400 protein n=3 Tax=Spermatophyta RepID... 86 7e-16 UniRef50_B6JWR3 RNA exonuclease n=1 Tax=Schizosaccharomyces japo... 86 7e-16 UniRef50_A3DCR5 Exonuclease, RNase T and DNA polymerase III n=3 ... 86 8e-16 UniRef50_B1ZD08 Exonuclease RNase T and DNA polymerase III n=1 T... 85 8e-16 UniRef50_A5E1X8 RNA exonuclease 4 n=1 Tax=Lodderomyces elongispo... 85 9e-16 UniRef50_Q4S474 Chromosome undetermined SCAF14743, whole genome ... 85 1e-15 UniRef50_B4QJK2 GD14476 n=11 Tax=Drosophila RepID=B4QJK2_DROSI 85 1e-15 UniRef50_Q5A3Q0 RNA exonuclease 4 n=3 Tax=Candida RepID=REXO4_CANAL 85 1e-15 UniRef50_Q4V7K3 MGC115620 protein n=5 Tax=Tetrapoda RepID=Q4V7K3... 85 1e-15 UniRef50_UPI0000DB6C62 PREDICTED: similar to XPMC2 prevents mito... 85 1e-15 UniRef50_C8NWH7 DNA polymerase III subunit epsilon n=1 Tax=Coryn... 85 1e-15 UniRef50_B1P7L9 YacC n=21 Tax=root RepID=B1P7L9_ECOLX 85 1e-15 UniRef50_B8HJ08 Exonuclease RNase T and DNA polymerase III n=1 T... 85 1e-15 UniRef50_C4JR78 Predicted protein n=1 Tax=Uncinocarpus reesii 17... 85 2e-15 UniRef50_UPI00017F79C3 YALI0B10824p n=1 Tax=Yarrowia lipolytica ... 85 2e-15 UniRef50_C2M4A1 Exonuclease, RNase T and DNA polymerase III n=2 ... 85 2e-15 UniRef50_C7QA32 Exonuclease RNase T and DNA polymerase III n=1 T... 85 2e-15 UniRef50_UPI00016EA237 UPI00016EA237 related cluster n=1 Tax=Tak... 85 2e-15 UniRef50_B9KV31 Putative uncharacterized protein n=1 Tax=Rhodoba... 85 2e-15 UniRef50_C5DR59 ZYRO0B05764p n=1 Tax=Zygosaccharomyces rouxii Re... 84 2e-15 UniRef50_C4V0M2 Putative uncharacterized protein n=2 Tax=Selenom... 84 2e-15 UniRef50_D2QVF1 Exonuclease RNase T and DNA polymerase III n=1 T... 84 2e-15 UniRef50_Q5YSF0 Putative DNA polymerase n=1 Tax=Nocardia farcini... 84 2e-15 UniRef50_Q1WA52 Putative uncharacterized protein (Fragment) n=3 ... 84 2e-15 UniRef50_Q2S065 DNA helicase II n=1 Tax=Salinibacter ruber DSM 1... 84 2e-15 UniRef50_Q1Q8L3 Exodeoxyribonuclease X n=1 Tax=Psychrobacter cry... 84 2e-15 UniRef50_Q8WTP8 Apoptosis-enhancing nuclease n=42 Tax=Chordata R... 83 3e-15 UniRef50_Q81AM4 DNA polymerase III, epsilon chain n=71 Tax=Bacil... 83 3e-15 UniRef50_UPI000186E2F9 RNA exonuclease, putative n=1 Tax=Pedicul... 83 3e-15 UniRef50_Q4D4N5 Mitochondrial DNA polymerase I protein B, putati... 83 4e-15 UniRef50_C5MBT8 Putative uncharacterized protein n=1 Tax=Candida... 83 4e-15 UniRef50_Q6ADV7 DNA polymerase III, epsilon subunit n=4 Tax=Micr... 83 4e-15 UniRef50_A6WH29 Exonuclease RNase T and DNA polymerase III n=1 T... 83 4e-15 UniRef50_A6G9M5 DNA polymerase III, epsilon subunit n=1 Tax=Ples... 83 5e-15 UniRef50_C7R5J9 DNA polymerase III, epsilon subunit n=1 Tax=Jone... 83 5e-15 UniRef50_C1YIK4 DNA polymerase III, epsilon subunit n=1 Tax=Noca... 83 5e-15 UniRef50_B8GE83 Exonuclease RNase T and DNA polymerase III n=1 T... 83 5e-15 UniRef50_A0YUY5 Putative uncharacterized protein n=1 Tax=Lyngbya... 83 5e-15 UniRef50_Q2W5J8 DNA polymerase III epsilon subunit and related 3... 83 5e-15 UniRef50_Q5KJQ4 RNA exonuclease 4 n=3 Tax=Eukaryota RepID=REXO4_... 83 5e-15 UniRef50_A1ZST4 3'-5' exonuclease eri-1 n=2 Tax=Bacteria RepID=A... 83 6e-15 UniRef50_Q4SXK5 Chromosome 15 SCAF12379, whole genome shotgun se... 83 6e-15 UniRef50_D1XXS2 Exonuclease n=1 Tax=Prevotella bivia JCVIHMP010 ... 83 6e-15 UniRef50_Q4Q9U9 Putative uncharacterized protein n=6 Tax=Trypano... 83 6e-15 UniRef50_B3W7U1 DNA polymerase III, alpha subunit (Gram-positive... 82 8e-15 UniRef50_UPI000155C35F PREDICTED: similar to HEM45 n=2 Tax=Mamma... 82 9e-15 UniRef50_Q8KQH6 DNA polymerase III epsilon subunit (Fragment) n=... 82 9e-15 UniRef50_A7VSN5 Putative uncharacterized protein n=1 Tax=Clostri... 82 1e-14 UniRef50_Q0BGF9 Exonuclease, RNase T and DNA polymerase III n=1 ... 82 1e-14 UniRef50_Q4SE72 Chromosome undetermined SCAF14625, whole genome ... 82 1e-14 UniRef50_C6CTA0 Exonuclease RNase T and DNA polymerase III n=1 T... 82 1e-14 UniRef50_UPI000186E025 3'''' histone mRNA exonuclease, putative ... 81 1e-14 UniRef50_Q6CE69 RNA exonuclease 4 n=1 Tax=Yarrowia lipolytica Re... 81 1e-14 UniRef50_Q9BQ50 Three prime repair exonuclease 2 n=14 Tax=Mammal... 81 2e-14 UniRef50_UPI000174666F hypothetical protein VspiD_20115 n=1 Tax=... 81 2e-14 UniRef50_C0XQ35 DNA polymerase III epsilon subunit (Exonuclease)... 81 2e-14 UniRef50_UPI000187EE2E hypothetical protein MPER_14994 n=1 Tax=M... 81 2e-14 Sequences not found previously or not previously below threshold: >UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT Length = 726 Score = 178 bits (452), Expect = 9e-44, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V D+ETTGL+ E+G + V G+ + V + +++ G Sbjct: 418 LEDDFVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDR-FSAFVNPGVSIPSFIVKLTGI 476 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + E ++++G+ N FD + + Sbjct: 477 TDDMVKDA----PPVEQVLNEFMEFIQGSVLVAHNANFDVGFIKQNAKLMG--------E 524 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +V + + + L+ VA+ L + + N H A+ D+ ATA F Sbjct: 525 KVKNPYIDT---LELCRKMFPELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIFMHCI 581 Query: 181 HTAAAH 186 + Sbjct: 582 NILKEK 587 >UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S1A9_FINM2 Length = 1421 Score = 175 bits (443), Expect = 8e-43, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 17/187 (9%) Query: 1 MA-KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ +V D+ETTGL T E+G + + + + + + K E+ Sbjct: 397 MNLREFVVFDIETTGLSNATEKITEIGAVKIVDNKIVD-EFNQLINPEIPIPEKITELTS 455 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E ++ T N FD + + + + Sbjct: 456 ITNEMVKDM----PKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGI------- 504 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + A + + LD + ++ V + N H A DA AT F + Sbjct: 505 ----NPVRTYIDTLAFARALEPHLKNHKLDTLTKKYNVNLFNHHRACDDARATGEVFICM 560 Query: 180 RHTAAAH 186 + Sbjct: 561 VNNLEQR 567 >UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia RepID=DPO3_THETN Length = 1401 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 18/186 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 + + +V D+ETTGL +E+G + + + + F + ++ G Sbjct: 384 LEGEFVVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFV--NPQIPISSFITKLTG 441 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E + + ++ +G N FD + + + + Sbjct: 442 IDESMVKDA----PLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTV- 496 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L + + LD +AE V +++ H A+ DA ATA F + Sbjct: 497 ----------LDTLELSRHLYQDLKNYKLDTLAEFFEVKLLHHHRAVEDAKATAEIFIKM 546 Query: 180 RHTAAA 185 Sbjct: 547 LEKLQE 552 >UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z9S3_9FIRM Length = 1474 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +V DLETTG + +E+G + V+ G+ + V + ++ Sbjct: 405 LNDRYVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDR-FSTFVNPEIPIPFRIEKLTSI 463 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + ++ + + N FD + + + Sbjct: 464 NDEMV----IDAPKIEEILPQFMEFCKDSVMVAHNSDFDMSFIEANCKRQDLE------- 512 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + A + I LD VA+ LG+ + + H A+ DA TA F L Sbjct: 513 ----CDFTVIDTVAMSRYLIIGLGRYKLDNVAKALGIVLDHHHRAVDDAECTALIFLKLC 568 Query: 181 HTAAAH 186 Sbjct: 569 KMLEGK 574 >UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria RepID=C9S0C0_GEOSY Length = 1444 Score = 170 bits (431), Expect = 2e-41, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V D+ETTGL +E+ + V GE + ME+ G Sbjct: 426 EETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFA-NPGHPLSVTTMELTGIT 484 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + DW T N +FD + G+ Sbjct: 485 DEMVKDA----PKPDEVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGR-------GK 533 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + + L+ + ++ + + H AI DA AT L Sbjct: 534 IANPVIDT---LELARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLLK 590 Query: 182 TAAAH 186 A Sbjct: 591 EAEER 595 >UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus RepID=C7RGM9_ANAPD Length = 1365 Score = 169 bits (429), Expect = 3e-41, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 59/181 (32%), Gaps = 16/181 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V DLETTGL E+G V+ G+ + V K +EI G Sbjct: 346 EESFVVFDLETTGLSRYKDRITEIGACRVEGGKITEIY-NELVNPEMVIPEKIIEITGIT 404 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + D+ + + G N FD V + F+P Sbjct: 405 NEMVKD----CPTIEEVLPGFLDFCKDSILVGQNTDFDVGFVRENCHRMGLDFNP----- 455 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + LD +A +L +P N H A DA ATA F + Sbjct: 456 ------IYLDTLPMARALFSDMKKFSLDKIARKLEIPAFNHHRASDDARATAQIFIKMFK 509 Query: 182 T 182 Sbjct: 510 M 510 >UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=A7HNS3_FERNB Length = 1390 Score = 168 bits (427), Expect = 7e-41, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+DLETTGL+ + +E+G + G+ + T + + K++ I G E Sbjct: 382 TYVVLDLETTGLNPRSDEIMEIGAVKTRDGKVID--EFHTFVRPNKLNKKSLNITGITED 439 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ ++++ + N FD T + + F Sbjct: 440 MLKDA----PDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEF--------- 486 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D + L + + LD + + G+ H A+ DA T F L A Sbjct: 487 NPPYIDTLRLSQA-LLRNKIKSFSLDKLVDHFGLGAFQHHRALDDARVTVNVFWKLIELA 545 Query: 184 AAH 186 Sbjct: 546 KKK 548 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 168 bits (426), Expect = 9e-41, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 62/181 (34%), Gaps = 16/181 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V+D ETTGLD +E+G + + G+ + H ++ ++ EI G Sbjct: 355 NATFVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVD-EYHTLIKPSREISRRSSEITGIT 413 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L + E +L + N FD + +G Sbjct: 414 QEMLENKR----SIEEVLPEFLGFLENSIIVAHNANFDYRFLRLWIKKV--------MGL 461 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 W D A A L LD+V E+LG+ H A+ DA TA F Sbjct: 462 DWERPYIDTLALAKSLL---KMRSYSLDSVVEKLGLGPFRHHRALDDARVTAQVFLRFVE 518 Query: 182 T 182 Sbjct: 519 M 519 >UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWI2_ALIAD Length = 1440 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 15/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D ETTGL+ +E+ + V G+ + ++ + DPK +E+ G Sbjct: 426 EYVVFDTETTGLNAREDTLIEIAAVKVKAGQIVDTYA-TLIDPERSLDPKIVELTGITNE 484 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + A + + RG N FD + + + W Sbjct: 485 MVAGQ----PKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDP--------W 532 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D A ++ + L + ++ V +VN H A+ D+ ATA F + A Sbjct: 533 EQPVIDT--LALARVLYPGEKNYKLKTLTQKFSVDLVNHHRALADSEATAKVFVHMLKDA 590 Query: 184 AAH 186 A Sbjct: 591 KAR 593 >UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia RepID=DPO3_CLOTE Length = 1427 Score = 166 bits (422), Expect = 2e-40, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V D+ETTG +E+G + + G+ + V K +E+ G Sbjct: 409 LEDSYVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYS-TFVNPERIIPEKIIELTGI 467 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + + + D++ + N FD + + + + + F+ Sbjct: 468 HDYMVKDA----PKIEEVLPKFIDFIEDSILVAHNANFDVSFIKKNCKDFGIHFN----- 518 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L + K + L+ VA+ LG+P++N H A+ DA T Sbjct: 519 ---NPILDTIP---LCKFLYPELKRYKLNVVAKHLGIPLLNHHRAVEDAKTTGDILLKAF 572 Query: 181 HTAAAH 186 Sbjct: 573 EDLKDK 578 >UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae RepID=C7NEP7_LEPBD Length = 1459 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 1 MAKQ--LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M + +V D+ETTG D +E+G + + G + V K E+ Sbjct: 419 MIEDEIYVVFDIETTGFDPFNDKIIEIGAVKMR-GREVIGEFSEFVNPEIPIPQKITELT 477 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + + ++ ++ G T N FD + ++ + + +S Sbjct: 478 TITDEMVANA----EKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLEYS--- 530 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + D + + GL + + G+ + H A+ DA ATA F Sbjct: 531 ------PSVIDT--LPLARTLLPELRGYGLANLVKYFGITLETHHRAVDDAKATAEVFQK 582 Query: 179 LRHT 182 + Sbjct: 583 FLNM 586 >UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia RepID=DPO3_CLOPE Length = 1449 Score = 165 bits (419), Expect = 5e-40, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 65/184 (35%), Gaps = 20/184 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V D+ETTG +E+G + + GE + V+ K E+ + Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPKVNIPYKITELTSITQ 491 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + +++ + N AFD + + + + Sbjct: 492 NMVNGQ----PTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMG--------KTL 539 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC----FDM 178 + + + + + L+ VA+ LG+ + N H A+ DA ATA F Sbjct: 540 KNPVMDTVP---LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKK 596 Query: 179 LRHT 182 ++ Sbjct: 597 MKEE 600 >UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW68_HALOH Length = 1397 Score = 165 bits (418), Expect = 7e-40, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 15/176 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V DLETTGL+ +E+G + V +G+ + V+ + K E+ G Sbjct: 382 SATFVVFDLETTGLNKFKNEIIEIGAVKVKSGKVID-EFSSFVKPGESIPNKITELTGIT 440 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + R G+ +++ G+ N FD + G Sbjct: 441 NEMVSRA----PDIEGVIGDFLEFIDGSILVAHNADFDYGFLQVALKKTG-------QGD 489 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L + + L+ +A L V + N H A+ DA AT+ F Sbjct: 490 ISYPVLDT---LTLSRALLPDLSNHKLNTLARHLNVRLDNHHRAVEDARATSEIFI 542 >UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWZ0_STRM9 Length = 1465 Score = 165 bits (418), Expect = 8e-40, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V D+ETTG +E+G + + G+ L V K +E+ G Sbjct: 401 EEEFVVFDIETTGFSPINDKIIEIGAVKLKNGKVLDRFSEF-VNPQTIIPKKIVELTGIN 459 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + ++++G T N FD ++++ ++ Sbjct: 460 DNMVKDSDI----IDKVMPRFLEFVKGTTLVAHNAKFDVGFISKKCEDLNLETD------ 509 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + K+ +D + LD + +R + + N H A+ DA ATA F L Sbjct: 510 -----FSYIDTLEWSKILVDDVKRFNLDTLTKRFNIKLENHHRAVDDANATAELFKKLLS 564 Query: 182 TAAAH 186 +A+ Sbjct: 565 LVSAN 569 >UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI24_RHOM4 Length = 565 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 16/179 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VVD ETTG +E+ + V G + + + P + G Sbjct: 8 FVVVDTETTGSGPA-DRIIELAAVRVQGGRIVERFA-TLINPGRSVPPFITRLTGITTAM 65 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + D+L N AFD ++ + + + Sbjct: 66 L----VGRPSADEVLPDFLDFLGDGVLVAHNLAFDRKMLEAELQRIGLAWPGN------- 114 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + +GLD + +PV NRH A+GDA ATA L A Sbjct: 115 ---PALCTLRLARRLLPGLPAKGLDGLIRFYQIPVENRHRALGDAEATAHVLLRLLEEA 170 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + +++DLETTG +++G++ ++ G+ + P ++ Sbjct: 1 MKDRFVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDRFSSF-FNPERDIPPFVQQLTN 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E+ + A +V D L+ + F N +FD + + +P Sbjct: 60 ITEQMVADA----PSFAEEAAKVADMLQQSYFVAHNVSFDLQFLQEELHMAGLPPFSG-- 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + ++ E L +A++L + H A DA TA F L Sbjct: 114 --------PTIDTVELARIVFPTAESYKLGDLAKQLHIDHDQPHQADSDAEVTAKLFIAL 165 Query: 180 RHTAAA 185 + Sbjct: 166 LNRLRQ 171 >UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YUT4_NOCDA Length = 595 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 56/185 (30%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A +V+DLETTG + EVG + V GE + V + G Sbjct: 23 AASFVVLDLETTGTSASGSRITEVGAVRVRGGEVV-GEFATLVNPGTPIPANITLLTGIT 81 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLR---GNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + + + + +L N FD+ + + + Sbjct: 82 QSMVA----SAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPG-- 135 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + D A L T L +A GVPV H A+ DA AT Sbjct: 136 ------YPVVDTLRLARAVLARGETRNHRLATLAAYFGVPVAPNHRALEDARATVGVLHG 189 Query: 179 LRHTA 183 L Sbjct: 190 LVERL 194 >UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM Length = 1415 Score = 163 bits (412), Expect = 3e-39, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 60/180 (33%), Gaps = 16/180 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +V D+ETTGL E+G + + G + K E+ Sbjct: 399 NTYVVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQ-LINPQMLIPEKVQELTRITN 457 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E + D+++ + N FD+ + R + F Sbjct: 458 ALVENE----PTIEEVAPKFYDFIKDSVLVAHNAKFDTAFIRRVFKENDLDFIN------ 507 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + + T+ L + ++ GV +V H A+ DA ATA F L + Sbjct: 508 -----PILDTLSFARATVKDTKKFNLATLCKKFGVSLVGAHRAVNDAEATAHLFIKLINK 562 >UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MZX4_9GAMM Length = 738 Score = 163 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + ++VD+ETTG + EVG++ V GE + + + + G Sbjct: 570 EQPYVIVDVETTGGRKEQHRVTEVGMVKVLNGEIVD-EWQSLINPMRHIPQSITRLTGIS 628 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E+ ++ G+ F N FD + F Sbjct: 629 NEMVSNA----PVFDDVADEIAEFCAGSVFVAHNVNFDYGFFRSEFERLGRRF------- 677 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + L + L + + N H A+ DA A A F +++ Sbjct: 678 ----HAPKLCTVQMSRKYLPGHSSYSLGKLCAALDIDLENHHRALDDAKAAAHVFRLIQE 733 Query: 182 TAAAH 186 Sbjct: 734 KRQTS 738 >UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A6Z2_ALHEH Length = 714 Score = 162 bits (411), Expect = 4e-39, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 17/183 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGYYE 62 +V D E TGL+ + + + + V G L + P ++ +G + Sbjct: 509 FVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINPGRPIPPGSVRFHGITD 568 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + V + + ++ N AFD ++ + + F + + Sbjct: 569 DDVQDK----PPIEVVLPQFKSFVGDAVLVAHNAAFDMKFISMKEREAGVRFDNPVLDTL 624 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L D E LDA+ +R G+ + RH+A+GD ATA + Sbjct: 625 LLSALLD-----------GDEEDHSLDALCDRYGIAITGRHTALGDTLATAELLVRIIER 673 Query: 183 AAA 185 A Sbjct: 674 LEA 676 >UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes RepID=Q67P96_SYMTH Length = 1475 Score = 161 bits (409), Expect = 7e-39, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 57/182 (31%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+D+ETTG +E+G + GE + V P+ ++ Sbjct: 453 EFVVLDIETTGFSPIGDDIIELGAVRCRGGEIVDSFQSF-VRPTKPVPPEVQKLTNITPD 511 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A A ++ N FD + + R Y Sbjct: 512 MLEGA----PEAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKY-------LGEEFA 560 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L + + L A+ + L VP+V+ H A DA A L A Sbjct: 561 NPVLDT---LTLARAVLPHMRSHSLAALTKELQVPLVDHHRADADAKTAAMVLMKLLERA 617 Query: 184 AA 185 Sbjct: 618 EG 619 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 22/187 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +V+D+ETTGLD +E+ + ++ G V P + G Sbjct: 2 LPQTYVVLDVETTGLDPARDRIIEIAAVRLEGGNIT-RQFQTLVNPGRPIPPAIERLTGI 60 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + D R G N FD + + + L Sbjct: 61 SDAMVREA----PPLPEVLPGLLDLFRDAIPVGHNGTFDLAFLNQAL-GHGWHSPLLDT- 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 A ++ LD +++ L + H A+ D TA + L Sbjct: 115 ------------LALSRILFPCLASHRLDYMSKYLTLEATGHHRALDDVLTTARLLENL- 161 Query: 181 HTAAAHL 187 A L Sbjct: 162 --WQATL 166 >UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=Clostridiales RepID=C7GFY3_9FIRM Length = 697 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 16/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V DLETTG D +E+G + V GE V + E+ Sbjct: 471 LDDTYVVFDLETTGFSPDKNKIIEIGAVKVVHGEITERFS-TFVNPEVPIPYRIEELTSI 529 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + ++ N FD + + + + Sbjct: 530 RDDMV----IDAPKIETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIE------- 578 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + A ++ + LD VA+ LGV + N H A+ DA TA F Sbjct: 579 ----KEFTIIDTVALARILLPQLNRFKLDTVAKALGVSLENHHRAVDDAGCTAEIFVKFV 634 Query: 181 HTA 183 Sbjct: 635 KML 637 >UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM Length = 1010 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTG+ +E+ + V+ G+ + V P A +NG ++ Sbjct: 24 DYVVFDLETTGISSKYDEVIEISAVKVEAGQ-VTGEFSTLVNPGRKIPPAASRVNGITDK 82 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRV 122 + + G+ + G N FD + R Y Sbjct: 83 MVAGAL----PFSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRKVPDNDY--- 135 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + L +AE G+ H A+ D + L Sbjct: 136 -------VDTLLLARAALPELSHHRLVDLAEHYGISAKGAHRALNDCHMNQKVYGKLAEE 188 Query: 183 AAAH 186 A A Sbjct: 189 AEAA 192 >UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7T3_9FIRM Length = 237 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K + VD+ET+G+ +E+G + V G+++ + P E+ G Sbjct: 1 MVKDYVCVDIETSGIRVKWDKIIEIGAVKVRDGKAVD-TFSELINPGLKLSPYITELTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + ++ + G N FD + + + + + F + Sbjct: 60 TDEMLKDK----PFIEEVLPRFIEFAGDDVIMGHNIMFDYSFLKQNAINQKLKFDKMG-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + E GL+ + G+ N H A DA T+ +++L Sbjct: 114 ---------IDTLKIARKTLKGLESRGLEYLCNYYGIADENHHRAFNDAEVTSKLYNVLM 164 Query: 181 HTAAAH 186 Sbjct: 165 EKFGTE 170 >UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus RepID=Q1IXC1_DEIGD Length = 180 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 23/189 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-------AAADPKAMEI 57 ++V DLETTGL + VE+G L V G + T+ + +A + Sbjct: 3 VVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQRV 62 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + + E D++ + A N FDS+ + + ++P Sbjct: 63 HGISDAMVQDA----PELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGLVWAPP 118 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFC 175 + LD +A+RLG+ RH ++GD TA Sbjct: 119 AEY----------CTVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRHRSLGDVQVTAEA 168 Query: 176 FDMLRHTAA 184 F L + Sbjct: 169 FVRLMERLS 177 >UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C525 Length = 529 Score = 158 bits (401), Expect = 7e-38, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 13/183 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VVDLETTGL +E+G + G+++ ++ + G Sbjct: 20 NTTFVVVDLETTGLKAKNDHIIEIGAIKTRGGKTI-GTFSSFIDPGMEIPDHITSLTGIT 78 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + T Q + ++ RG+ + N FD + + + + Sbjct: 79 TADVE----TAPQLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWPS----- 129 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A L+ L +A +G P H A+ DA AT L Sbjct: 130 ---PSVVDTLTLARRVLDRSQVGSFKLSQLARYVGSPNRPAHRALDDAIATVDVLHYLME 186 Query: 182 TAA 184 A Sbjct: 187 RLA 189 >UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=B4S124_ALTMD Length = 715 Score = 158 bits (400), Expect = 8e-38, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 51/176 (28%), Gaps = 16/176 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A+ +VVD+ETTG + E+G++ + G+ + + + G Sbjct: 540 AQPYVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDR-FQTLLNPQRRIPSSITRLTGIS 598 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + + F N FD + ++ F Sbjct: 599 DDMVADA----PLFAEVADHIASFTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPK--- 651 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L + + + + H A+ DA A A Sbjct: 652 --------MCTVREMRRTHPGLSSYSLANLTKHFHIDMEQHHRALSDAKAAAELLK 699 >UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510268 Length = 581 Score = 158 bits (400), Expect = 8e-38, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 12/182 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++VDLETTG + E+G + GE L + + + P + G Sbjct: 30 TFVIVDLETTGTTAGKSEITEIGAVKTRGGEVLGEFQSLVKPEESVISPFVARLTGITHA 89 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ G N FD + + Sbjct: 90 MVDDA----PSIRSVLPSFLEFCVGAVLVAHNAPFDIGFIRSACEKLDYHWP-------- 137 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D + ++ D L +A G V H A+ DA AT + Sbjct: 138 QPTVLDTVTLSRRVVSRDEVRNHKLSTLAAHFGTEVSPDHRALSDAKATGEVLHRVLERF 197 Query: 184 AA 185 Sbjct: 198 GG 199 >UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha subunit (Fragment) n=1 Tax=Oribacterium sinus F0268 RepID=C2KW36_9FIRM Length = 821 Score = 158 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 ++ +V DLETTG D +E+G + ++ G+ + + V + ++ Sbjct: 514 LSSTTVVFDLETTGFDPRVNHIIEIGAVKIENGKIIDR-MDVFVNPGVPIPFRITQLTSI 572 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + D+ + N FD V+ + ++PFS Sbjct: 573 DDSMVMDAKG----IEEVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIPFSAPV-- 626 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + A +L + LD VA+ L + +++ H A+ DA ATA + Sbjct: 627 ---------IDTVALSRLLLPRLNRFKLDTVAKELKIELLHHHRAVDDAEATARIYLKEL 677 Query: 181 HTAAAH 186 Sbjct: 678 EILEQR 683 >UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11UG6_CYTH3 Length = 449 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG +E+ + D + + + G Sbjct: 3 YSIIDIETTGGHASGNRIIEIAIYKFDGEKITDTYQ-TLINPERRIPVFITSLTGIDTEM 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A E+ D+ R + F N FD T V ++ +MP++ Sbjct: 62 VADA----PVFADVAREITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYN--------- 108 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L L + L + LG+ V NRH A GDA AT + L Sbjct: 109 --LPKLCTVRLSRKIFPGLPSYSLGNLCGSLGIDVQNRHRAAGDAEATVRLLNKLL 162 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 65/185 (35%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M++ +V+DLETTG D A +++G + V G ++ V+ + P E+ G Sbjct: 1 MSQSFVVIDLETTGNSPDQGAKMIQIGAVKV-EGCTITDRFSTFVDPGCSIPPFITELTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 ++ + ++ ++ G++ N FD + Q T + Sbjct: 60 ITDKDVEGA----PVFREIATDLLAFMEGSSLVAHNVPFDKGFLEAQLETEGLRLPKCCQ 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ + E L ++ L + H A DA TA F L Sbjct: 116 FD----------TVELSRVLLPTQESYKLSELSSSLDMDHDRPHRADSDAEITAELFIKL 165 Query: 180 RHTAA 184 H Sbjct: 166 LHKLE 170 >UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI21_CORK4 Length = 616 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 59/185 (31%), Gaps = 13/185 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VVDLETTGL +E+G + + GE + V+ P I G Sbjct: 31 NTTFVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISR-FSTFVDPGRLIPPLITNITGIS 89 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + A A + ++ RG N FD + + + + Sbjct: 90 DDDVNGA----PKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHITWP------ 139 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 A L+ L ++A H A+ DA AT F L Sbjct: 140 --QPTHLCTLVLARTMLDRCAVGSFKLSSLARHFHATTTPTHRALDDALATVTVFHGLLE 197 Query: 182 TAAAH 186 +H Sbjct: 198 ELGSH 202 >UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=17 Tax=Fusobacterium RepID=A5TTA5_FUSNP Length = 1454 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V D+ETTGL+ T +E+G + + G + + EI Sbjct: 424 EEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQ-LINPGRPIPYHITEITSIT 482 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E + G+ D++ N FD + R Y + Sbjct: 483 DEQVANE----PKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKY--------LNI 530 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D + + GL + + LG+ + H A+ D+ ATA F + Sbjct: 531 DLQSSVIDT--LQMARDLFPDLKKYGLGDLNKTLGLALEKHHRAVDDSQATANMFIIFLD 588 Query: 182 TAAAH 186 Sbjct: 589 KYKEK 593 >UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0FNH3_9FIRM Length = 228 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 49/183 (26%), Gaps = 16/183 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ DLETTG +E+ + V +G+ + V A +N + Sbjct: 15 PDYVLFDLETTGTSCIYDEVIEISAVKVRSGKVVE-EFSQLVNPKRPIPYAASMVNHISD 73 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGR 121 + E E + + G N FD + R Sbjct: 74 EMVANE----PDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTNDY-- 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + KL L +AE G+ H A+ D F+ L Sbjct: 128 --------VDTLRVAKLCFPEWRHRRLSDLAEHYGISTRGAHRALTDCKMNQQVFEYLAK 179 Query: 182 TAA 184 Sbjct: 180 ELE 182 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 17/186 (9%) Query: 1 MAKQLIVVDLETTGLDYD--TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M+K+ +VVDLETTG + ++ + V+ GE L + P E+ Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSF-INPKREIPPFITELT 59 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G E + + V + L+G F N FD + + Sbjct: 60 GIDESMVKQA----PLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGY------ 109 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + ++ + ++ + + L +A++ + H A DA ATA F Sbjct: 110 -TEIHCPKVDTV---ELAQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAELFLQ 165 Query: 179 LRHTAA 184 + Sbjct: 166 FLNEIE 171 >UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB Length = 688 Score = 156 bits (394), Expect = 4e-37, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 59/186 (31%), Gaps = 19/186 (10%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +V D ETTGL V++ L + G L + V P + ++ + Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRVHHISD 553 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A D+ +G N FD + + F Sbjct: 554 DMVQDA----PDIIEAGRRFHDFCQGAVLVAHNAPFDLAFLRLKEKVIGRRFDNPV---- 605 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLR 180 L D + LDA+ ER G +P RH+A+GD ATA F + Sbjct: 606 -------LCTVLMSAGLFDHSGQHTLDALCERFGITIPPEARHTAMGDTVATAEVFVRML 658 Query: 181 HTAAAH 186 A Sbjct: 659 GLLQAK 664 >UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli RepID=DPO3_LACSS Length = 1446 Score = 156 bits (394), Expect = 4e-37, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 63/185 (34%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + ++ D+ETTGL +E+ + + GE + ++ ++ Sbjct: 422 SAEYVIFDVETTGLSAVYDSIIELAAVKMRDGEVV-ASFDEFIDPERPLSAFTTQLTSIT 480 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ A +++ AG N +FD + + Sbjct: 481 NEMVHGAKKE----AEVLAMFKEFTGDAVLAGHNVSFDMGFLNAGYERNDIDL------- 529 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + ++ + LD++ +R + + + H A DA +T + L Sbjct: 530 IDNPVIDT---LELSRMLHPEYKNHKLDSLTKRYKINLEHHHRANADAESTGYLLYKLEK 586 Query: 182 TAAAH 186 AA + Sbjct: 587 EAAEN 591 >UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrhizobium RepID=A4YW65_BRASO Length = 737 Score = 156 bits (394), Expect = 4e-37, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 53/175 (30%), Gaps = 16/175 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVD+ETTG E+G + V + + H + K +E+ G Sbjct: 560 EQDYVVVDIETTGSWSSGDRITEIGAVKVRNHQLVE-QWHSLINPQRPIPAKIVELTGIT 618 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ F N FD ++ + F Sbjct: 619 NQMVRDA----PVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRF------- 667 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 R L + GL + G+ + + H A+ DA A A Sbjct: 668 ----RFPKLCTCVGMRRRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAAAHLL 718 >UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VLC1_9ACTO Length = 615 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 54/181 (29%), Gaps = 13/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTG TA E G + V GE + V P + G + Sbjct: 51 TFVVFDLETTGTGPTTAEITEFGAVKVRGGEVV-AEFATLVRASTGIPPLITVLTGITDA 109 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L T A ++++G N FD + + P Sbjct: 110 MLA----TAPPLAEVLPAFLEFIQGTVLVAHNAGFDLSFLKAACERVGYPVPTWEH---- 161 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D A A + D + L ++A H A+ DA AT L Sbjct: 162 ----LDTARLARRIVTRDESPNNKLSSLARLFRARTEPCHRALADARATVDVLHGLFERL 217 Query: 184 A 184 Sbjct: 218 G 218 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 155 bits (392), Expect = 7e-37, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 55/183 (30%), Gaps = 17/183 (9%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + +V+DLETTG +E+G++ ++ E + P + G Sbjct: 1 MN-RFVVIDLETTGHAPSKNDKIIEIGMVIIEGDEIIDTKT-TFFNPGQPIPPFITNLTG 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + ++ L + N FD + + + V Sbjct: 59 ISDDDVADA----PLFTEKALSIKSILEDSYIIAHNVNFDLGFLNAELKENGIDRLHNQV 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L ++ L +++ + + H A+ DA TA F L Sbjct: 115 ----------LDTVELSRILFPTAPGYKLSQLSDHFNLQHDDPHRALSDAYVTAKLFQKL 164 Query: 180 RHT 182 Sbjct: 165 MDK 167 >UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like domain n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B5Z3_METEA Length = 754 Score = 155 bits (392), Expect = 7e-37, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 61/184 (33%), Gaps = 18/184 (9%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V+D ETTGL + +EVG + + G + I G Sbjct: 542 ERFVVIDFETTGLSPNNGDRVIEVGAVEIVDGRIGRR-FQSLANPGFPVSARITAITGIS 600 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + A EV ++ G T N FD + + + Sbjct: 601 NAML----VDAPPLAEVIREVSAFIEGATLVAHNAGFDRRFLQAEMERLGLWDDREM--- 653 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 L GK L +AE GV + + H A+ DA ATA F ++R Sbjct: 654 --------LCTMRLGKRAYPGLGSYKLAFLAEHAGVALPDAMHRALADAMATAELFLVMR 705 Query: 181 HTAA 184 A Sbjct: 706 EREA 709 >UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A5KMD9_9FIRM Length = 279 Score = 155 bits (391), Expect = 8e-37, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 59/185 (31%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K I DLETTGLD +E+G L V G+ ++ P + G Sbjct: 35 MLKSYIAFDLETTGLDPMNNEIIEIGALKVRDGKVSER-FMEFIKPQELISPAITGLTGI 93 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + D+ + G N FD + +PF + Sbjct: 94 SNDMVA----SARPARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKMG-- 147 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + K E + L A+ E + H A DA ATA + L Sbjct: 148 ---------IDTLKIAKKVHPELESKSLSALCEHYKIENKAAHRAYFDALATAKLYQTLS 198 Query: 181 HTAAA 185 H Sbjct: 199 HYFEP 203 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M+ + +VVDLETTG ++ + ++ G+ + + E+ G Sbjct: 1 MSNKYVVVDLETTGNSAKKGDKIIQFAAVVMEGGKIIDQYSS-LLNPGKEIPAFIEELTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + A +V + L F N FD + + + + P Sbjct: 60 LNDSMVSDA----PVFAEIAPKVMELLEDAYFVAHNVLFDLSFLQEELLDAGFP------ 109 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + + + ++ L ++ + G+ H A DA ATA + Sbjct: 110 -GFYGPVIDTV---ELARTVLPCSDSYKLSDLSAKEGIMHDRPHQADSDAYATAKLLHIF 165 Query: 180 RHTAAA 185 Sbjct: 166 LERLEE 171 >UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clostridiales RepID=B8FYI4_DESHD Length = 1447 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+DLETTG T E+G++ + G+ + V + +E+ + Sbjct: 423 TYCVLDLETTGFSAATEKITEIGIMKIQGGKIID-QFGCFVNPEKPIPARVVEVTNITDD 481 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + ++ +++ G+ N FD + F Sbjct: 482 MVRDA----ETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFD-------- 529 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + K + L +A+ LG+ V H A+ D T F+++ Sbjct: 530 ---YTYLDTLSLAKELFPDYKTYKLGRIAKNLGIKVEVAHRALDDVGTTVKVFNIMVDML 586 Query: 184 AAH 186 Sbjct: 587 KER 589 >UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC6_9FIRM Length = 226 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 16/185 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ DLETTG+ +E+ + V G+ + V A +N + Sbjct: 15 RDYVLYDLETTGISSLYDEVIEISAVKVRNGKIVD-EFSELVNPGRPIPYAASSVNNISD 73 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E + + AG N FD + R Y G+ Sbjct: 74 KMVENAR----SFEKVLPEFLAFAGDDVLAGHNIAGFDMKFLYRDCEKY--------FGQ 121 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A KL + L +AE G+ H A+ D F+++ Sbjct: 122 TLTNDYIDT--LAIAKLCFPEWKHRKLSDLAEHYGISTKGAHRALADCRMNQQVFELMAK 179 Query: 182 TAAAH 186 + Sbjct: 180 ESGGT 184 >UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flavobacteriales RepID=A4BWD8_9FLAO Length = 462 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 49/180 (27%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG E+ L D + + V + G Sbjct: 3 YAVVDIETTGNGPKGQKITEISALIFDGKKIVD-EFTSLVNPEQNIPAFITSLTGITNAM 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + +V + F N FD I+ + + F Sbjct: 62 VRNA----PRFFEIAKKVAEITENTIFVAHNVNFDYNIIQAEFKSLGFDFKRKK------ 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + I L + +P+ RH A GDA ATA L Sbjct: 112 -----LCTIRLTRKIIPGLPSYSLGNICTGENIPINGRHRAKGDAEATAELLRRLIERDE 166 >UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15TC4_PSEA6 Length = 769 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 16/181 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VVD+ETTG E+G + V + + + + G Sbjct: 602 QPYVVVDVETTGGCKPGHRITEIGAVKVIDSKVVD-SWSSLINPERRVPHFITRLTGISN 660 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +++ +++ F N FD + FS Sbjct: 661 DMVEDA----PLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAFS------- 709 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L + + L +++ G+ + N H A+ DA A A M+ Sbjct: 710 ----MPKLCTVREMRKYYPGSPSYSLGKLSKEYGLSLDNHHRALCDAQAAAELLIMVNEK 765 Query: 183 A 183 Sbjct: 766 K 766 >UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SPM0_9CAUL Length = 717 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 16/179 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG E+G + + GE + + P E+ G Sbjct: 545 YTVVDIETTGGQSANERVTEIGAVKIRNGEIID-TWQSLINPERRIPPFITELTGISNAM 603 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A + +L+G F N FD ++ + PF Sbjct: 604 VRDA----PRFADIADDFDAFLKGTVFVAHNVNFDYGFLSAEYRRLERPF---------- 649 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 R + A+ + + GL ++ G+ + N H A+ DA A A ++ Sbjct: 650 -RYPKMCTVASMRRHFPGLAAYGLGPLSREFGIELKNHHRALSDAMAAAELLKLINERR 707 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 17/187 (9%) Query: 1 MA-KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M ++ +V+D+ETTG +++ + ++ G+ + + ++ Sbjct: 1 MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITERFSK-YINPNKSIPAFIEQLT 59 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + E Q EV L G F N FD V + Sbjct: 60 GISNQMVENE----QPFEAVAEEVFQLLDGAYFVAHNIHFDLGFVKYELHKAGFQLPDCE 115 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 V L ++ E L ++E L + H A DA T F Sbjct: 116 V----------LDTVELSRIVFPGFEGYKLTELSEELQLRHDQPHRADSDAEVTGLIFLE 165 Query: 179 LRHTAAA 185 + Sbjct: 166 ILEKLRQ 172 >UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacteria RepID=A9KMW9_CLOPH Length = 1527 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V D+ETTG +E+G + + G + + ++ Sbjct: 494 EDTCVVFDIETTGFSSVKDKIIEIGAVKIQHGTIVDR-FSTFINPEVPIPYHIQKLTSIT 552 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + E + G N +FD + ++ ++P + +V Sbjct: 553 DEMV----IGSRTIEEILPEFLSFCEGCYLVAHNASFDIGFITKKAEFLNIPLTVTSVD- 607 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++ ++ LD VA+ L + + N H A+ DA TA + Sbjct: 608 ----------TVGLARVLLNHLNNFKLDTVAKALSISLENHHRAVDDAGCTAEIYLKFLE 657 Query: 182 TAAAH 186 Sbjct: 658 MLRER 662 >UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4KA24_THASP Length = 769 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 65/184 (35%), Gaps = 17/184 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 V D ETTGL+ ++VG + G+ L V+ P++ +I+G Sbjct: 579 YTVFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPERPLAPESAKIHGITS 638 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + N AFD + + + F Sbjct: 639 EMLRGQ----PTIDKVLPAFHAFAADTVLIAHNAAFDMRFLQLKEEQTGLRF-------- 686 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 H + + E L+A+AERLG+ +V RH+A+GDA TA F L Sbjct: 687 DHPVIDT---LLLSAVVHPNQESHRLEAIAERLGLTIVGRHTALGDAIVTAEVFLKLIPL 743 Query: 183 AAAH 186 A Sbjct: 744 LAEK 747 >UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A7U0_THEAQ Length = 627 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 21/183 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYER 63 DLETTGLD + +G +++ L + V+ + E++G Sbjct: 443 YTAFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTWE 502 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + +L G+ N AFD + + + Sbjct: 503 MLKDK----PKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRK--------------VGID 544 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L D L + L+ +AER GVPV+ RH+A+GDA TA + + Sbjct: 545 QPPLVDT--LLLAHLLFPDLKDHRLERLAERFGVPVLGRHTALGDALMTAEVYARMIPLL 602 Query: 184 AAH 186 Sbjct: 603 KER 605 >UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCD0_PARDP Length = 706 Score = 153 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 17/184 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 V D ETTGL+ +++G L + G+ L V+ P+++ +G + Sbjct: 516 YTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHP 575 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + A + G N AFD + + + F Sbjct: 576 EMVQGQ----PRIAEVLPAFHAYASDTVLVGHNVAFDMRFLQLKEAATGLRFDQPV---- 627 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + L+A+A RLGV + RH+A+ DA TA F L Sbjct: 628 -------LDTLLLASIAQPHEPSHSLEAIAARLGVEITQRHNALSDALVTAEVFLRLLPL 680 Query: 183 AAAH 186 A Sbjct: 681 LKAR 684 >UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEU3_ACHLI Length = 1504 Score = 153 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V D+ETTG + +E+ V G + + I + Sbjct: 412 YTVFDIETTGFSFTRDKIIEIAAYKVRGGFIAER-FEVLINPEEQLSETTKRITNITDEM 470 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM---PFSPLTVGR 121 + E ++++G N +FD + + + PF+ + Sbjct: 471 VENEK----TIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLN 526 Query: 122 VWHHRLADLAAYAAGKLNI-------DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + + + L A+ + V + H AI DA ATA Sbjct: 527 IARYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEAHHRAIYDAYATAE 586 Query: 175 CFDMLRH 181 F + Sbjct: 587 VFLNMLQ 593 >UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCE6_BRAFD Length = 551 Score = 153 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 55/185 (29%), Gaps = 13/185 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 L+VVDLETTG D E+G + V GE L V+ + G Sbjct: 18 EATLVVVDLETTGTDPAADAITEIGAVKVRGGEVL-GEFRTFVDPERPIPAYIASLTGIT 76 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + D+ N FD ++ Q + + Sbjct: 77 DAAVAEA----PSIRTVLPMFLDFAGDAALVAHNARFDIGFLSAQAAACEITWP------ 126 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 R+ D A A D L +A +G + H A+ DA AT + Sbjct: 127 --RPRVLDTLALARTVFRRDEVRDHRLSTLARHVGAGITPDHRALSDARATVDVLHAIIE 184 Query: 182 TAAAH 186 Sbjct: 185 RLGPS 189 >UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (Modular protein) n=2 Tax=Burkholderiales RepID=B3R8V7_CUPTR Length = 532 Score = 152 bits (385), Expect = 4e-36, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 17/179 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++ ++ VDLETTG D E+G++ V + + ++ + P + G Sbjct: 29 LSRPIVFVDLETTGADAQRDRITEIGVVEVGPDGIVEWET--LLDPGMSIPPFIQRMTGI 86 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + L+G F N FD + + F Sbjct: 87 SDDMVRGQ----PTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTF------ 136 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R L + E GLDA+ R G+ RH A+ DA + + Sbjct: 137 -----RADVLCTVRLSRSLFPSVERHGLDALIARFGLTPKGRHRALADAELLWQFWQKI 190 >UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C5FA2 Length = 285 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 18/187 (9%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVD+ETT +E+G + + GE + V K E+ Sbjct: 15 NEFVVVDIETTAFSIQKGGRILEIGAVKIKNGEIVD-NFSTLVNPELKIPKKITELTKIT 73 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDS-TIVARQRVTYSMPFSPLTVG 120 + + +++ + N +FD + T + Sbjct: 74 NDMVKDA----PYIGNVLQKFNEFISDSVIVAHNASFDWDRFLKPALATIGI-------- 121 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + H + + + K + L + L VP+ H AI DA ATA CF L+ Sbjct: 122 KSSHKVMDTV---SLSKFTFPDKKKHTLIDLCSYLEVPLEKNHRAIDDAIATAKCFLKLK 178 Query: 181 HTAAAHL 187 A L Sbjct: 179 ALNAEKL 185 >UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF57_9CLOT Length = 319 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 15/177 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+DLETTG D +E+G L + GE + +T + D +++ G Sbjct: 21 DYVVIDLETTGYDPHRDEIIELGALRIHEGEVVESFSSLT-KPQRDLDDYIIQLTGISNE 79 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + + D++ + G N FD + + S+ + + Sbjct: 80 MLA----SAPELSDVFPRYLDFIGDSIVVGHNVHFDVNFIYDTCIKESLKLFTNDLVDL- 134 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L V+ + V H ++ D T CF+ R Sbjct: 135 ---------LWLSRKLLPDLTSHKLCRVSSHFNICVEGMHRSLFDCKTTFECFEKCR 182 >UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJN1_9PROT Length = 735 Score = 152 bits (384), Expect = 6e-36, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 V D ETTG++ +++G + + G L V+ P+ + I+G Sbjct: 544 TYTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRIHGIS 603 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + V + D+ N AFD + + + FS Sbjct: 604 DDMVRGQ----PNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFSQPV--- 656 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + E LD++AERLG+ + +RH+A+GDA ATA F + Sbjct: 657 --------LDTLLLSGVLHPNQESHQLDSIAERLGIGIEDRHNALGDACATAEVFLKMLP 708 Query: 182 TAAA 185 A Sbjct: 709 LLAQ 712 >UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5W2_RUMGN Length = 219 Score = 152 bits (384), Expect = 7e-36, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 16/181 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V DLETTG+ + +E+ + V G + V +A ++NG + Sbjct: 13 PDYTVFDLETTGISANMDDIIEISAVKVKGG-IVQDTFSTLVNPGRHIPAQATKVNGITD 71 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGR 121 + + A E ++ + G N FD + R+ Sbjct: 72 QMVSEA----PLIREAMTEFLRFVGEDILVGHNIQSFDMKFIYREVEEL-------FQET 120 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 V + + L + + + L +AE G+ H A+ D CF+ + Sbjct: 121 VSNDFIDTLYM---ARKCLPELKHHRLTDLAEHFGISSKGAHRALNDCVMNQKCFEEMAK 177 Query: 182 T 182 Sbjct: 178 L 178 >UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA Length = 412 Score = 151 bits (383), Expect = 7e-36, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHIT-VEQLAAADPKAMEINGYY 61 +V D ETTGL V + + + G L V +++ +G Sbjct: 218 TFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRPIPAESIRYHGIT 277 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + V + + ++ N AFD + + + F Sbjct: 278 DDMVVDK----PPAGVVLPQFRSYVADAVLVAHNAAFDLKFLRMREKDMGIRFD------ 327 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L P LD + +R G+ + +RH+A+GDA TA Sbjct: 328 -----IPVLDTMILSNFLDGPDAGHSLDDICDRYGIEITDRHTALGDAMVTAAVLLRQIE 382 Query: 182 TAAAH 186 Sbjct: 383 ALEGR 387 >UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAB0_9FIRM Length = 225 Score = 151 bits (383), Expect = 7e-36, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 16/182 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ETTGLD + +E+G ++V G F +T E + P + G + Sbjct: 57 YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGRFQTFLTPEPYQSLSPFITNLTGITDS 116 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++D+L G T G N FD + + G Sbjct: 117 DL----VGAPTFREILPRLRDFLGGYTLVGHNVNFDINFLYDRIYR--------ETGEHL 164 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 ++ D K + L+A+ + G+ N H A+ D T D L Sbjct: 165 NNPYLDTK--KLAKTVVPGLSHYSLEALCKHFGI-AGNHHRAVDDCELTEKVLDALWRLK 221 Query: 184 AA 185 Sbjct: 222 TQ 223 >UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MME8_9FIRM Length = 1605 Score = 151 bits (383), Expect = 8e-36, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 16/179 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +IV D+ETTGL E+G + + E + V + E+ G Sbjct: 588 EDDIIVFDIETTGLHPANERITEIGAVKLRNMEIVER-FSTFVNPMMPIPSNITELTGIT 646 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + VA + + + N FD + + F Sbjct: 647 DDMVADA----PTEDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAAARMEKSF------- 695 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + K + + LD +A+ + + H A+ DA + + Sbjct: 696 -DNPVVDT---LSIAKAALKGIKNYKLDTIAKYFKLGDFDHHRAVADAEMLCMIYMHIV 750 >UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIX0_KOSOT Length = 185 Score = 151 bits (383), Expect = 9e-36, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 17/187 (9%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEIN 58 M K +V+D ETTG +E+ + + G+ + H V I+ Sbjct: 1 MNKVYVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIRIPAYISGIH 60 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + +E + + +++L G + D Sbjct: 61 GLKNEDV----TSEPTISDVFPRFKEYLGNAIIVGHSIEVDMKFFDIACKEIG------- 109 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + L ++ L +A+RL + H A+ DA T F Sbjct: 110 TFPLSNQYIDTLKIAK----DLFKEGSYSLAELAKRLKIKDAPTHRALDDARVTGKVFLA 165 Query: 179 LRHTAAA 185 + Sbjct: 166 MVKKLGG 172 >UniRef50_C0FUI4 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUI4_9FIRM Length = 241 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +V+DLE TGL+ T +E G V + + K + + G Sbjct: 1 MLTDYVVIDLEMTGLNAKTDRILEAGAARVRGN-VVTATFSEIINPKRKLPEKVVSLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + T+ D++ + G N FD + + + V + F V Sbjct: 60 TNEMAAQGKETDAT----LAAFFDFIGEDILVGQNVIFDYSFLKQWAVNHKRTFERNAVD 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + L ++ G+ V+ H A+ D T F+ ++ Sbjct: 116 -----------TLKLARKFLPQEQKKDLASLCSYFGIERVHAHRALDDVMETQQIFEQMQ 164 Query: 181 HTAAA 185 A Sbjct: 165 KMYEA 169 >UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostridiales RepID=C7H779_9FIRM Length = 1417 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 51/184 (27%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + V D ETTGLD E+G + V GE + V+ PK E+ G Sbjct: 396 EFCVFDTETTGLDPGVEYLTEIGAVIVRNGEVVE-EFDTFVKPGKPITPKITELTGITNE 454 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRV 122 + A + G N FD + + F Sbjct: 455 MVADA----PGEKEALEAFLRFADGRILVAHNAHAFDIRFLKAAAKRSGISFE------- 503 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D A + + L +P H A D+AA F ++ Sbjct: 504 --PTYIDTLTMAQAM--YPGLHNYKQGTINKHLELPSYEAHRACEDSAALGRIFCVMLSD 559 Query: 183 AAAH 186 A Sbjct: 560 LAEK 563 >UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flexibacteraceae RepID=D2QE10_9SPHI Length = 180 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VD+ETTG E+ + G+ + H + P + G + Sbjct: 2 YCIVDVETTGGVKGPTRLTEIA-IFRHDGQQVVDSFHSLLNPGCPIPPFIRHLTGISDEM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A +V + + F N FD + + ++ F Sbjct: 61 VQDA----PTFADVANDVLNITQDAIFVAHNVGFDFSFIQKELNWLGHDFLR-------- 108 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + + L + L +P+ RH A GDAAAT F+ML A Sbjct: 109 ---RTLCTVRTSRKLLPGYPSYSLGKLCRSLEIPLNGRHRAQGDAAATVLLFEMLLKNDA 165 Query: 185 AHL 187 L Sbjct: 166 QGL 168 >UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAB9_9FIRM Length = 525 Score = 151 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 56/183 (30%), Gaps = 21/183 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ + D+ETTGLD +EVG + + G ++ V +A IN Sbjct: 50 KRYVAFDVETTGLDSKKDRIIEVGAILFENGHTVETYSS-LVNPEVKISKEATTINHITN 108 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGN-----TFAGSNPAFDSTIVARQRVTYSMPFSPL 117 + + + E+ +L N FD + +++ + Sbjct: 109 GMVKKA----PTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYD---- 160 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ L + + I VA+ + H AI DA Sbjct: 161 -------AQILCLDTLSLSRKIIPGLSNYKQTTVAKHFNIKNKQEHRAISDAEVCGEILW 213 Query: 178 MLR 180 L Sbjct: 214 KLL 216 >UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidetes RepID=A0LZ46_GRAFK Length = 457 Score = 151 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 55/176 (31%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG Y+ E+ + D + + V P + + G Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGQKVVDQFIS-LVNPEQPIQPFVVNLTGINNDM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + N FD I+ + + + Sbjct: 61 LKNA----PKFYEVAKRIVEITEDCILVAHNAKFDYRILRTEFRRLGFEYERKS------ 110 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L K I L + LG+P+ +RH A GDA AT F ML Sbjct: 111 -----LCTVELSKKLIPGLPSYSLGKLVRSLGIPLSDRHRAAGDAQATIKLFKMLL 161 >UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1K0_9GAMM Length = 488 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 16/178 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++++D ETTG E+ L+ V+ G + + L P + G Sbjct: 8 PPSMVILDCETTGGRASRDRLTEIALIEVEDGHVVKR-WQTLLNPLRPIPPWITRLTGIT 66 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E+ L G N FD + + + Sbjct: 67 DATVADA----PTFDEIADELFACLDGKVIVAHNARFDYSFLRQSFQRCGYTLGNK---- 118 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L + + GLD + ERLG+ + NRH A+ D F+ + Sbjct: 119 -------TLCSVKLSRQLFPEHRSHGLDRIIERLGLTIDNRHRAMADTEVLLAFFEHI 169 >UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=Actinomycetales RepID=Y2191_MYCTU Length = 645 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 52/187 (27%), Gaps = 19/187 (10%) Query: 4 QLIVVDLETTGLDYDT------ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 +VVDLETTG E+G + V G L V + P+ + + Sbjct: 42 TFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVL-GEFATLVNPQHSIPPQIVRL 100 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + ++ + N FD + + + Sbjct: 101 TGITTAMVGNA----PTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWP-- 154 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ A L+ D L A+A V H A+ DA AT Sbjct: 155 ------QPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLH 208 Query: 178 MLRHTAA 184 L Sbjct: 209 ALIERVG 215 >UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CX37_DEIDV Length = 202 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 23/191 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA-------ADPKAMEI 57 ++V DLETTGL + VE+G L V G+ + + T+ + A + Sbjct: 3 VVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQRV 62 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + E +++ + N FD + Q M ++P Sbjct: 63 HGISNEMVR----SAPTIEEVLPEFLEFVGDSAVVAHNVGFDCGFMRAQARRLGMVWAPA 118 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFC 175 + L +AERLG+ RH + GD TA Sbjct: 119 GEH----------CTVQLSRRAFPKERAHNLTVLAERLGLNFAPGGRHRSFGDVQVTAHA 168 Query: 176 FDMLRHTAAAH 186 + L A Sbjct: 169 YVRLLELLATA 179 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 63/185 (34%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYY 61 V D ETTGL+ +++G + V G+ L ++ ++ ++G Sbjct: 543 TYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGIT 602 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + N AFD + + + F Sbjct: 603 ADMLAGQ----PVIEAVLPSFHAFAADTVLVAHNAAFDMRFLQLKEDLTGLRFDQPV--- 655 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + L+A+AERLG+ VV RH+A+GDA TA F L Sbjct: 656 --------LDTLLLSAVIHPNQDSHRLEAIAERLGITVVGRHTALGDAMVTAEVFLKLVP 707 Query: 182 TAAAH 186 A Sbjct: 708 LLAEK 712 >UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive type) n=3 Tax=Lactobacillus delbrueckii RepID=Q049V0_LACDB Length = 1411 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 17/180 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 ++ ++ D+ETTGL +E+G + + GE + F I + + Sbjct: 390 QEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHP--LSETTINLTSIT 447 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + AV + D+ + G N FD V P Sbjct: 448 DEMVQAA----DDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYP-------E 496 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + +L LD++ + V + + H A DA AT + L Sbjct: 497 ISQPVVDT---LEVSRLLHPEQSRHTLDSLCRKYNVALEHHHRANQDAEATGYLMFKLLD 553 >UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquificaceae RepID=DPO3E_AQUAE Length = 202 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 15/180 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+DLE TG D + + +++ + V+ G + V + ++ G Sbjct: 18 TFVVIDLEATGFDVEKSEVIDLAAVRVEGG-IITEKFSTLVYPGYFIPERIKKLTGITNA 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + E +++ N G D + + Y R Sbjct: 77 ML----VGQPTIEEVLPEFLEFVGDNIVVGHFVEQDIKFINKYTKQY----------RGK 122 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 R L + + L +AE G H A+ DA TA F + Sbjct: 123 KFRNPSLCTLKLARKVFPGLKKYSLKEIAENFGFETNGVHRALKDATLTAEIFIKILEEL 182 >UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FIG6_FLAJ1 Length = 459 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 60/180 (33%), Gaps = 16/180 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +VD+ETTG + + E+ ++ + G+++ V P + G Sbjct: 3 NQEYAIVDIETTGGNASGSRITEIAII-IHDGKNVLDRYETLVNPEQDIPPSIFGLTGIN 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + +V + L F N FD + V Q +S Sbjct: 62 NEMVANA----PIFDDISEKVLEMLTDRIFVAHNVNFDYSFVHHQLEQAGFKWSAKK--- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L A + L + L + + NRH A GDA ATA F +L Sbjct: 115 --------LCTVRAARKIKPGLGSYSLGNLCNSLNISLENRHRAGGDADATAILFSLLLE 166 >UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit family protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FXM2_9RHIZ Length = 466 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 18/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 V D ETTGL V++G + + G+ + V+ + +I+G ++ Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASSKIHGITDK 333 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + A A ++ + + N FD + + R + F Sbjct: 334 MV----MGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAF--------D 381 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCFDMLRH 181 H + + A + TE LD V ERLG+ + +RH+A+GDA TA + Sbjct: 382 HPIVDTVLVSA---IIFGTTERHMLDVVCERLGIRIEKKDRHTALGDARVTAEAMKRMLP 438 Query: 182 TAAAH 186 A Sbjct: 439 LLEAR 443 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 63/184 (34%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I+VDLETTGLD + A +E+G L V GE + H V + + G + Sbjct: 2 EWIIVDLETTGLDPERAEILEIGALRVRGGEIVD-TFHTLVRPERPIPDEITRLTGLSDA 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A + AG + F+ + + + Y +P P Sbjct: 61 DVAGA----PSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQPGDG---- 112 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + ++ L+ +A RL + H A+ DA L Sbjct: 113 ------LCTLSLARILAPRLMSHRLEYLARRLRLRAEVSHRALADARTAHQLLMRL-EEK 165 Query: 184 AAHL 187 A L Sbjct: 166 ARRL 169 >UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class) RepID=A5UUI5_ROSS1 Length = 956 Score = 150 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 20/185 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + I +D+ETTGL+ +E+ + + E L V+ + + + + G Sbjct: 1 MNQIYIAIDVETTGLEAGVDEIIEIAAVKFNADEVLE-TFSTLVQPVHSLPLNSSRLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + A +L+ G N FD ++ Q + +P Sbjct: 60 TADMLA----SAPRFAEVAPRFAAFLKNYPLVGHNVEFDLRMLRAQGMR--LPQPAFDTF 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L + T L A+A LG+ H A+ DA T F L Sbjct: 114 EL-------------ATLLMPRTPAYRLSALAATLGIHHDEAHRALSDADVTRQIFLYLL 160 Query: 181 HTAAA 185 A Sbjct: 161 RRIEA 165 >UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma RepID=Q2NJG3_AYWBP Length = 1572 Score = 150 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTG-ESLYFVPHITVEQLAAADPKAMEINGY 60 +V DLETTGL +E+ + + G + F ++ I Sbjct: 478 EATYVVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGEFQKF--IDPQQKLTKTITNITNI 535 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + Q + + + N +FD + + + P Sbjct: 536 TDEMLQGQ----QTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEP---- 587 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + D A + + + + L +A V + + H A+ DA AT+ F + Sbjct: 588 ----KPIIDTMALSQ-RYFSNLLKYFSLKRLATVFKVKLEDHHRALADATATSEIFIKMI 642 Query: 181 HTAA 184 A Sbjct: 643 DQLA 646 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 150 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 15/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D+ETTGL +E+G + + G + + V + + G Sbjct: 83 PRSFVALDVETTGLRPARHRIIEIGAVRYEDGCCVER-FSVLVNPHRRLPVYIVRLTGIR 141 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L LT + +L +T G N FD + + P Sbjct: 142 DEDL----LTAPSFVDVAAAFRVFLGESTVIGYNVGFDLDFLNAELRRIGQGPLPN---- 193 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + LDA+ +G+ RH A+ DA ATA + L Sbjct: 194 ------PALDVLPLARALLTANGRYDLDAICRSIGLARGTRHRALPDAEATAVLYLHLVE 247 Query: 182 TAAA 185 A Sbjct: 248 RAEQ 251 >UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cellular organisms RepID=Q1LGD6_RALME Length = 530 Score = 150 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 17/185 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ VDLETTG D E+G++ V + V+ L + P + G + Sbjct: 33 RPIVFVDLETTGADAQRDRITEIGVVEVGPDGIQEWDT--LVDPLTSIPPFVQGLTGITD 90 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A+ + + L+G F N FD + + + F Sbjct: 91 EMVRGQ----PTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTF-------- 138 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R L + E GLDA+ R G+ RH A+ DA + + Sbjct: 139 ---RADVLCTLRLSRSLFPSVERHGLDALIARFGLTPKGRHRALADAELLWQFWQKIHEI 195 Query: 183 AAAHL 187 + L Sbjct: 196 YSVDL 200 >UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacillus RepID=Q81AF9_BACCR Length = 315 Score = 150 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 48/176 (27%), Gaps = 16/176 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D ETTG + ++V + E + V + + G Sbjct: 9 DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVD-QFVSYVNPERPIPDRITSLTGITNY 67 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +L N N +FD + +P Sbjct: 68 RVSDA----PTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPK------- 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + K + L+ + LG+ + H+A D A + Sbjct: 117 NKVIDTVF---LAKKYMKHATNHKLETLKRMLGIRLS-SHNAFDDCITCAAVYQKC 168 >UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK59_9BACT Length = 228 Score = 150 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 71/180 (39%), Gaps = 14/180 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 V+D ETTGLD + A + V + V + + F + + ++++ + Sbjct: 41 QNAVFSVIDTETTGLDLNDARIINVAAVKVQNFKIIDFY-NSFINPETEIPKESIQWHNI 99 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + +++ + G + FD ++ ++ + Sbjct: 100 TDEMVADK----PTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMM-------DSFSC 148 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ ++ L + Y+ + D E LD + + V RH+A+GDA ATA F + Sbjct: 149 QINNNWLDTMLIYSHAIIKKD--ERYSLDYLLDLYNVTCNGRHTALGDALATAEVFTKMI 206 >UniRef50_A9F4T5 DNA polymerase III, epsilon subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F4T5_SORC5 Length = 258 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 7/181 (3%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + VD+ETTG D +E+G++ +GE L + + ++ I+G + Sbjct: 43 QPIAFVDVETTGRDPAGDRIIELGIVIGRSGEILTRY-NWLIHPGRPIPAESTAIHGIKD 101 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A E+ +G A N FD + + + M Sbjct: 102 ADVEGK----PSFAEVAEEILGCFKGAIPAAYNATFDRSFLLAELERVGMRPREP--PPA 155 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + E L +A RLG+ + H A DA A L Sbjct: 156 MRREVDWVDPLTFARELYKNEESRALGDMAARLGISLEKAHRATDDAEAALQVLYALAKD 215 Query: 183 A 183 Sbjct: 216 P 216 >UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA Length = 929 Score = 149 bits (376), Expect = 5e-35, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 17/187 (9%) Query: 1 MAK-QLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M K + VVDLE TG D+D +++G V+ G+ + V ++ Sbjct: 1 MNKTKYAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVD-TFQSKVNPQRPIPAGITKLT 59 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + + EV L F N FD + ++ V P Sbjct: 60 GITDEQVQNA----PKFNDIVDEVYRKLVDTVFVAHNVEFDFPFLNQELVRSGYPELN-- 113 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + ++ T+ L + L + + HSA DA ATA Sbjct: 114 --------IPAVDTVSLSQIVFSFTKGYRLRDLTSYLKIEHDDPHSADSDAIATANLLIA 165 Query: 179 LRHTAAA 185 ++ Sbjct: 166 IKKNLQQ 172 >UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W351_9ACTO Length = 547 Score = 149 bits (376), Expect = 5e-35, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 51/189 (26%), Gaps = 17/189 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +VVDLETTG + E+G + V G+ + V A + + G Sbjct: 27 QETTFVVVDLETTGAGPGSHTITEIGAVRVRGGQ-VEDELSTLVNPGRAIPAQITVLTGI 85 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNT----FAGSNPAFDSTIVARQRVTYSMPFSP 116 + A W R N FD + + + Sbjct: 86 TNAMVAGA----PPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHE 141 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 R+ D A A L +A +G P H A+ DA AT Sbjct: 142 --------PRVLDTLALARRAWTRSEVPNHRLATLASFVGSPTRPTHRALDDARATVDVL 193 Query: 177 DMLRHTAAA 185 Sbjct: 194 HAALEVLGP 202 >UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostridium tetani RepID=Q895Z5_CLOTE Length = 380 Score = 149 bits (376), Expect = 5e-35, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 16/175 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+DLETTGL T +E+ + +G+ + + + +A EIN Sbjct: 82 DEFVVIDLETTGLYPVTDKIIEITAIKYKSGQIVE-KYNTLINPKINIPKRATEINNITN 140 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E+ +++ N +FD + + + Sbjct: 141 NMVKD----SPVIEDVLPELLKFIKEYPLVAHNASFDIKFLNANLALINREIKNVA---- 192 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L + E L + N H A+ D TA + Sbjct: 193 -------IDTLQLSRAMYTFLPNHKLTTIKEHLCISEDNSHRALPDCITTAEIYL 240 >UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A526_BIFAD Length = 256 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 57/187 (30%), Gaps = 16/187 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +DLETTG VE+G + V G + + + +NG Sbjct: 82 MVDNYTSIDLETTGFSPSDDRIVEIGAIRVRNGRPVKRYSQ-LINPQRPLPEEITRLNGL 140 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + L + + ++ +T G N FD+ + M Sbjct: 141 TDADLRNQ----PTVDQVLPDFIRFIGNDTLIGHNINEFDAAFLLANTTRLGMR------ 190 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 H + + L + R G+ H A DA TA C++ + Sbjct: 191 ----HIGNKTIDTLPLDRALYPEEPKHRLVDIIRRFGIAQTESHRAADDALQTAQCYETM 246 Query: 180 RHTAAAH 186 + A+ Sbjct: 247 KAYMKAN 253 >UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenibacillus RepID=C6D2T0_PAESJ Length = 1437 Score = 148 bits (375), Expect = 6e-35, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + IV D+ETTGL +E+ + + G+ + + ++ Sbjct: 418 TAEYIVFDIETTGLSIINNKIIELAGVKMREGKEVDR-FSTFINPHEKIPYHIQQLTNIN 476 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E + E D++ + N FD + + MP Sbjct: 477 DEMVKDAPELEPK----LREFIDFIGDSILVAHNARFDIGFIQANLKSIGMP-------D 525 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 V + L + + L+ ++ + V + N H A+ D+ A L + Sbjct: 526 VTNPVLDT---LELARFLHPTMKNHRLNTLSAKYKVSLDNHHRAVDDSVALGGVLFGLIN 582 Query: 182 TAAAH 186 AA Sbjct: 583 DAAER 587 >UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphingobacterium spiritivorum RepID=C2FTR2_9SPHI Length = 469 Score = 148 bits (375), Expect = 6e-35, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VD+ETTG + E+ + D + + + + G Sbjct: 13 YAIVDIETTGGYAANSGITEIAIYLHDGHQVIDSYQ-TLINPHKEIPYHIQMLTGITPEM 71 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L ++ +L F N FD + + + Sbjct: 72 LTDA----PSFEDVAADIYSFLENKVFVAHNVNFDYSFIYAHLKACGYQWKSPK------ 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + L + +RL +P+ +RH A GDA AT F+ + Sbjct: 122 -----LCTVRLARNIFKGFSSYSLGNLCQRLDIPISDRHRAAGDAKATVILFERIL 172 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 148 bits (375), Expect = 7e-35, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 15/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVDLETTG D + ++ G + V G+ + V + + G Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIANFA-TDVNPNQVVPKQIQSLTGISNTQ 71 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + +L F N FD +AR+ V P Sbjct: 72 VQKA----PYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLT-------- 119 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + ++ + + L ++E LG+ N H A DA TA +++ Sbjct: 120 --IPAIDTVELAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEK 175 >UniRef50_C7G8J4 Putative DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8J4_9FIRM Length = 235 Score = 148 bits (375), Expect = 7e-35, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+DLE TGL+ T +EVG + V +++ I + K E+ G E Sbjct: 2 QDYVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDKFGAILCQN-VKIPEKVTELTGITE 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + +++ + G N FD + + V ++MP V Sbjct: 61 AMVQGGMEK----EEAMRQFFEFIGEDIIVGQNVIFDYGFLKQWAVNHNMPLERSAVD-- 114 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + + L+++ GV N H A DA T ++ LR Sbjct: 115 ---------TLKLARKFLPKEQKKDLESLCAYFGVKRENAHRAFDDAYETWQIYEALRER 165 Query: 183 AAAH 186 Sbjct: 166 YEEE 169 >UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=2 Tax=Thermus thermophilus RepID=Q5SK39_THET8 Length = 624 Score = 148 bits (375), Expect = 7e-35, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 61/180 (33%), Gaps = 21/180 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYER 63 DLETTGLD + V + ++V L V P A ++G Sbjct: 440 YTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNPGRPISPAATAVHGLTAE 499 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + +++ N AFD + + PL + Sbjct: 500 MLRDK----PPLEAVLPAFRAFVQDTVLVAHNGAFDLAFLR----RAGLDQPPLLDTLL- 550 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +L + L+A+A R GVP RH+A+GDA TA F ++ Sbjct: 551 -----------LAQLLFPDLKDYRLEALAHRFGVPATGRHTALGDALMTAEVFVRMQPLL 599 >UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IIU0_PSEHT Length = 730 Score = 148 bits (374), Expect = 9e-35, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 16/180 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VVDLETTG E+GL+ V G+ + V + G Sbjct: 564 NRIYSVVDLETTGALKGGNKITEIGLVKVQHGKVID-TWTTLVNPQRHIPGFITSLTGIS 622 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + L G+ F N FD + ++ +PF Sbjct: 623 DSMVSNA----PVFADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVPFK------ 672 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L + + L +++ + + + H A+ DA ATA +++ Sbjct: 673 -----MPKLCTVVESRKAFAGLKSYSLGNLSKHFNLNLTSHHRALADATATAQLLLLIQK 727 >UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus RepID=A5LYL7_STRPN Length = 910 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V D+ETTGL ++V + G + + E+ G Sbjct: 422 EATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVI-AEFDEFINPGHPLSAFTTELTGIT 480 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E Q++ + N FD + + +P + Sbjct: 481 DDHVKNAK----PLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLP-------K 529 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + GL + +R GV + + H A DA AT + Sbjct: 530 ISQPVIDT---LEFARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIK 586 Query: 182 TAAAH 186 A Sbjct: 587 EVAEK 591 >UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CLT9_9FLAO Length = 375 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 57/179 (31%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+D+ETTG +D E+ + D E + + P ++ G + Sbjct: 2 TYAVLDIETTGGKFDEEGITEIAIHRFDGHEVVDTFIS-LINPERPIQPYVQKLTGIDPK 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + T + + + R + N FD I+ + F Sbjct: 61 MVQ----TAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYNFERK------ 110 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + I E L + LG+PV NRH A GDA AT L Sbjct: 111 -----TLCTVDLSQRLIPDAESHSLGKLVRSLGIPVSNRHRANGDALATLKLLQHLLDR 164 >UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDG4_9ACTO Length = 550 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 59/187 (31%), Gaps = 19/187 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VVDLETTGL E+G + + G + V+ P + G Sbjct: 29 WVVVDLETTGLGAGAD-ITEIGAVRIRDGAVVD-EFSSLVKPSRPIPPFITSLTGITPAM 86 Query: 65 LYREALTEQQTAVAWGEVQDWLR-----GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + A A +W N +FD + R + P+ + Sbjct: 87 VADAA----PIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRV-- 140 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ D A A L L VA G V H A+GDA ATA Sbjct: 141 ------RIVDTLALARLALPRPLVRNHKLGTVASYFGTATVPEHRALGDARATAEILLGF 194 Query: 180 RHTAAAH 186 AA Sbjct: 195 IDLLAAA 201 >UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM31_9BACT Length = 1428 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 55/182 (30%), Gaps = 16/182 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V DLETTGL+ +E+G + + E L V+ + G E Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIKMKGSEVL-GTYSTFVKPEKELSAMITSLTGITEDM 476 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E + G N +FD V + G W Sbjct: 477 LSEAR----PIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKH--------FGGDWE 524 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 D A A ++ LD V +RL + + H A DA TA A Sbjct: 525 MPCIDTLALAKSLF---RSKSYSLDNVVKRLKLGHFDHHRAFEDAKVTAEVLKKFVQLAK 581 Query: 185 AH 186 Sbjct: 582 KR 583 >UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=C5CGL7_KOSOT Length = 1430 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 58/186 (31%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +V DLETTGLD +E+G + + G + V+ K I G Sbjct: 415 MNSIYVVFDLETTGLDPSADEIIEIGAVKLK-GTEVIGEFSSFVKPERNLSEKVTRITGI 473 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 +R L + + ++ + + N FD V Sbjct: 474 SDRELEDA----PSLSEVLPKFLEFCKDSVLVAHNATFDYRFVRNAVKQL--------YN 521 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 W D A + L L D V +RL + H A DA TA F L Sbjct: 522 EDWKLPYIDTLALSKSLLKSKSYSL---DNVVKRLKLGDFEHHRASEDARITAEVFKKLL 578 Query: 181 HTAAAH 186 A Sbjct: 579 SMAKKR 584 >UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=A8H432_SHEPA Length = 215 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 50/186 (26%), Gaps = 18/186 (9%) Query: 2 AKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A +IV+D ETTGL +E+G + + G+ + + G Sbjct: 15 ADTVIVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDRFQQLM-NPGFRISGFIESYTGI 73 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + D++ N +FD + + + + Sbjct: 74 SNAMLADA----PSCEEVMAQFADFIGDYNLVAHNASFDQRFLDAELKRINCHYLGQFA- 128 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDML 179 + + L ++ + H A+ D+ TA + + Sbjct: 129 ----------CSMLIARRLYQAAPNHKLGSLVSYKNIQHDGVFHRALADSEMTASLWLAM 178 Query: 180 RHTAAA 185 Sbjct: 179 LEDLQQ 184 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 53/170 (31%), Gaps = 16/170 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D+ETTG + +EV + + G + ++ + + G + Sbjct: 4 RSFVAIDVETTGTSPEHDRLIEVAAVRFEDGREI-GCFSRLIDPGCPVPQRIQHLTGIHP 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + ++ +L N FD + + Sbjct: 63 AMLAGK----PRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSYD-- 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 ++ + L +AE LG+P+ + H A DA A Sbjct: 117 ---------TAELARVALPLARNHRLATLAELLGLPLEHHHRAEDDARAC 157 >UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphingobacteriales RepID=C7PV18_CHIPD Length = 456 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 52/177 (29%), Gaps = 16/177 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VD+ETTG E+ + + G ++ + + G + Sbjct: 2 YAIVDIETTGGHASANGITEIAIY-IYDGRNIVQQYETLINPGVPIPRYIQSLTGITDEM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + G++ L F N FD + + Sbjct: 61 VANA----PAFDEVAGDIFALLHDKIFVAHNVNFDYSFIQYHLAQAGYQLRTKK------ 110 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L G+ I L + + L + V RH A GDAAAT F +L Sbjct: 111 -----LCTVRLGRKIIPGLPSYSLGNLCKSLEISVTQRHRAAGDAAATVKLFGLLLQ 162 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 52/186 (27%), Gaps = 18/186 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGY 60 + + +DLETTG+D +EVG + V G F + + + G Sbjct: 25 PRTFVGLDLETTGVDSRVDRIIEVGAVRVVDGRVADTFESFV--NPGCPIPSDIVHLTGI 82 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYSMPFSPLTV 119 + + + +++ G+ + FD+ + + V Sbjct: 83 SDADVAGA----PTIDEVLPRIIEFIGGSPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGV 138 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + L A +P H A DA A + F L Sbjct: 139 FD----------TLPLTRALLPRLPNHRLATAARFFDIPTGRSHRATDDARAVSDLFLAL 188 Query: 180 RHTAAA 185 Sbjct: 189 LGVLDQ 194 >UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0P1Y1_9CLOT Length = 235 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 57/180 (31%), Gaps = 16/180 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K + DLETTGL D+ +E+G + + G+ + + + + G Sbjct: 2 KDYVAFDLETTGLSPDSDQIIEIGAVKIRDGKI-SGKYNCIIHPEIEVSDFIINLTGISR 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + E ++ G N FD + ++ PF V Sbjct: 61 DMLRKGI----PLKEGVEEFLEFSGDLPILGHNVMFDYKFMKMAAASFKYPFEKTGVD-- 114 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + E + L+ + H A DA ATA F+ ++ Sbjct: 115 ---------TLKVARKLLTGLENKKLETLCAHYHYVNQAAHRAYDDALATAVVFEQMKKE 165 >UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V2X6_9AQUI Length = 206 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 14/183 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++DLETTGL +EV + +G + + H+T + K + + G Sbjct: 9 EATFVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQLHHLTKPRENFIPSKVINLTGIT 68 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + EV ++L+ + N FD + ++ + Sbjct: 69 NAMV----IDKPYFEDIYPEVYNFLKDSIVVAHNAKFDISFLSEVHK----------IVF 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + RL + + + + L ++ LG+ +H A+ DA AT F + Sbjct: 115 KNNLRLHYICTDNLARRIFPEIQKKSLSSLTNYLGINFKQKHRALSDAQATLQAFQTMLE 174 Query: 182 TAA 184 Sbjct: 175 YLQ 177 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 53/184 (28%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +VVDLETTG ++ + V+ E V P E+ G Sbjct: 2 QRYVVVDLETTGNSAKKGDRIIQFSAVVVEGREIKTQFTSF-VNPEKPVPPFISELTGID 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + L + F N FD + ++ P Sbjct: 61 NGMLEEA----PVFSEIAPRIMEILEDSIFVAHNVLFDLPFLQQELKAAGFPPFRG---- 112 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L ++ L +A+ L + H A DA TA Sbjct: 113 ------PSLDTVEFSRIAFPTLNSYKLGDLADSLSLYHERPHRADSDAFVTAKLLLACME 166 Query: 182 TAAA 185 A+ Sbjct: 167 KCAS 170 >UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales RepID=A1SLE5_NOCSJ Length = 601 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 55/183 (30%), Gaps = 14/183 (7%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVDLETTG + A+ E+G + V GE L V + G Sbjct: 29 TFCVVDLETTGGSAEGGAMITEIGAVKVRGGEVL-GEFQTLVNPRTEIPAFIAVLTGISN 87 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A ++ G+ N FD + P+ Sbjct: 88 SMVADA----PPVEAALPAFLEFAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPGFE---- 139 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A A ++ D L ++A+ G H A+ DA AT L Sbjct: 140 ----VVDTARLARRVVSRDDAPNCKLSSLAKAFGSTTTPNHRALSDARATVDVLHGLMER 195 Query: 183 AAA 185 Sbjct: 196 LGG 198 >UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBV5_LARHH Length = 493 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 55/171 (32%), Gaps = 19/171 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++VDLETTG E+GL+ V G + V P E+ G + Sbjct: 4 RPYVIVDLETTGGHITRDRITEIGLVEVSHG--VTTRWSQLVNPGQPIPPFIEEMTGISD 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + L G N FD + + + F+ Sbjct: 62 AMVAEA----PPFAELAPALLARLNGKLLIAHNARFDYGFLKNEFRRLGLTFTT------ 111 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAA 171 L + LD++ R G+ V RH A+GDA A Sbjct: 112 -----DPLCTVKLSRRLYPQHAKHSLDSLIARHGIDVPPGMRHRALGDAEA 157 >UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI99_EUBR3 Length = 245 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 61/178 (34%), Gaps = 16/178 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K V+DLE TGL +E+G V GE + V + E+ G + Sbjct: 8 KNYTVIDLEMTGLSAKNDKIIEIGAARVRGGEIVD-TISTLVNPKQHIPQRVQELTGITD 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A A + +++ + G N FD + + + V + S Sbjct: 67 SDVENAA----DMDEAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVNHKRTLSLNAYD-- 120 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + L+ + E GV N H A+ DA T F+ L Sbjct: 121 ---------TLKIARKCLPAEQSKKLEDLCEYFGVSRKNAHRALDDAIETKQIFEKLL 169 >UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FGI7_9BIFI Length = 186 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VVDLETTG+ +E+G + V+ G ++ V + G Sbjct: 16 TDDYVVVDLETTGISPARDRIIEIGAVRVEHG-TVTAEYSKLVNPGRPVGGFITGLTGIS 74 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + LR + N FD + + T+G Sbjct: 75 DEMVGNAS----PIEAVLPDFLAHLRPSDTIVAHNANFDINFLYDNCMR--------TLG 122 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + D + L + +R G+ H + DA T C++ ++ Sbjct: 123 KPFSYDFIDT--LRLSRALFPQERQHRLVDLIQRFGIADEEEHRGLSDALQTVECYERMK 180 Query: 181 HTAA 184 A Sbjct: 181 PLLA 184 >UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae RepID=C1DWW1_SULAA Length = 205 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYER 63 ++VDLETTGL+ + +E+ L V+ G + H V+ P ++ G Sbjct: 11 FLIVDLETTGLNPVNSEIIEIAALRVEGG-IVVDKFHTLVKPSIGFIPTYITKLTGITNA 69 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + + + N FD + + +T + Sbjct: 70 LVVDK----PTIEEVFPQFLKFSENSIIVAHNAQFDMSFLNSVSYQ-------ITGRSIQ 118 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L K + L +A +P +H A+ DA T F + Sbjct: 119 NPVLCTQN---LAKRLFPDLPSKSLVNLAYHFNIPYNKKHRALEDALVTYELFKKIIDYL 175 >UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0M5_PHYMT Length = 1449 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 14/180 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D ETTGL +E+ + + + + + P + + Sbjct: 408 TYVIFDFETTGLSKINDQIIEIAAIKIQNNQIID-EFQTLINPQQELTPFIENLTNISNQ 466 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + + + N +FD + Q + + Sbjct: 467 DLKNQ----PLIATILPKFLKFCENSILIAHNISFDMGFLVNQTKKH--------LNLKL 514 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D A L+ L ++A+ + N H A+ D T F L + Sbjct: 515 NLPFIDTLNLARYCLD-SNLRYFNLKSLAKYFKISFENHHRAMSDVLITKTIFQQLLNYL 573 >UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2 Length = 233 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 64/183 (34%), Gaps = 16/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + +D+ETTGL+ +EVG+ V+ G+ V + + E+ G Sbjct: 1 MINRYVALDIETTGLNPAVDRIIEVGMARVEDGQITQKYS-TLVYPGISVSERITELTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + GE+ +++ G N FD + + + V + + Sbjct: 60 HNEELTGK----PRIEDIIGEITEFIGDWPVLGHNVIFDFSFLKKAAVNNGLTIND---- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + E + L + + + H A DA + + + L Sbjct: 112 -------DGIDTLKLARRILPEVEHKSLSFLCQYFNIDPGRSHRAYDDAVSASLLYAKLE 164 Query: 181 HTA 183 Sbjct: 165 EIK 167 >UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococcus faecium DO RepID=UPI0001BCC2A4 Length = 663 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 15/182 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V D+ETTGL +E+ + + G + ++ +++ G Sbjct: 424 EATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIE-SFDEFIDPGHPLSRTTVDLTGIT 482 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + ++ + N AFD + Y +P Sbjct: 483 DGMVRG----SKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIP-------E 531 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + GL ++++ GV + H AI DA AT + Sbjct: 532 AANPVIDT---LELARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHLAWIFVK 588 Query: 182 TA 183 A Sbjct: 589 EA 590 >UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exonuclease n=2 Tax=Clostridium kluyveri RepID=A5F9M6_CLOK5 Length = 441 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 48/175 (27%), Gaps = 16/175 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +VVDLETTGL+ +E+ + E + V P IN Sbjct: 129 DNFVVVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYT-TLVNPEVFIPPNITNINHIDN 187 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + +++ N FD L + Sbjct: 188 DMVKD----CPEIKEVLPGFMNFIGQLPLVAHNAPFDIKF--------LNANLALLGLYL 235 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L + E L + E L + V + H A+ D + Sbjct: 236 NNPIIDTLPI---SRKLFSEIENHKLGTIKEYLNIDVQDSHRALPDCYVCGQIYL 287 >UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1U9_9ACTO Length = 206 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 52/185 (28%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ VD+ETTGL D+ E+ + G+ + V + G + Sbjct: 16 TLVSVDIETTGLG-DSDAITELAAVKYQKGQVVE-TFSSLVNPGRQIPVFITRLTGIDNQ 73 Query: 64 GLYREALTEQQTAVAWGEVQDWLR--GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++ + N FD+ + + + Sbjct: 74 LVADA----PTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQF----- 124 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D ++ L + L +A G+ N H A+ DA + L Sbjct: 125 ---PASIDTVFFSRALLPRPQVQNHRLGTLAHHFGIKNPNAHRALADAYTCLELYKCLLD 181 Query: 182 TAAAH 186 A Sbjct: 182 VLHAA 186 >UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C3RL58_9MOLU Length = 1440 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 17/180 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + DLETTGL E G + + GE + + V + + + Sbjct: 402 TYVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDRLQMF-VNPGKSISSRITNLTSITND 460 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E + ++ N FD + +MP + Sbjct: 461 MVRNE----PTIDALLPRIIEFFDDCILVAHNANFDIGFLNENLRRNNMP-------EIT 509 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRH 181 + + + A + + P + L V V + H A DA F+M+ H Sbjct: 510 NPIID---SLALARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMMLH 566 >UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26FQ2_9BACT Length = 466 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG E+ ++ + L ++ + G Sbjct: 8 YCVVDIETTGNRMTGNRMTEICIVRMRGDTILDKYSS-LIDPEVLIPDYITTLTGIDNAM 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A E+ ++ + F N FD ++ + F Sbjct: 67 VA----SAPVFADVAEEILNFTKDYIFVAHNVNFDYNVLRNEFKRLHHDFKRKK------ 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + I L + + +G+P++NRH A GD AT F L Sbjct: 117 -----LCTVRLSRELIPGMRSYSLGKLCDDIGIPLINRHRAEGDTDATVILFQKLI 167 >UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Treponema RepID=Q73L66_TREDE Length = 217 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 15/173 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 D ETTG + VE+G + + ++ ++ P+A ++N + Sbjct: 16 FTAFDTETTGTEAKAERVVEIGCVKF-DIRGVIARYNVLIDPEKPMPPEAGKVNQITDEM 74 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + A + D++R N +FD + + ++ + Sbjct: 75 LAGQ----PKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCG-------KTKLTN 123 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + + L +A + GV VN H A DA F Sbjct: 124 KVFDT---LTFARETLPGLQSYALQNLATQFGVQAVNAHRAEDDARVCMEFFK 173 >UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIM3_PETMO Length = 1388 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 56/180 (31%), Gaps = 16/180 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V DLETTGL+ +E+G + + + + H V+ G + Sbjct: 381 EFVVFDLETTGLEPAMNEIIEIGAVKIKNMKIV-SKFHRLVKPRKPVSNFTSNFTGITNQ 439 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E+ + ++ G N FD + + Sbjct: 440 MLE----VEKPIEEVLPQFLSFIEGAVLVAHNAIFDYRFIREWVRRV--------YNEHF 487 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D A + L + GL V E L + H A DA TA F L A Sbjct: 488 EQTYIDTVALSKSLLT---LKSYGLAKVVEELKLGSFEHHRAHEDANITALVFLKLIEMA 544 >UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS5_PARDP Length = 659 Score = 146 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 59/183 (32%), Gaps = 17/183 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +V D ETTGLD V++ L + G V+ P + ++G + + Sbjct: 454 VVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITDAMV 513 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 A + N FD + R F Sbjct: 514 AGA----PDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHFDNQV------- 562 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + LDA+ ERLG +P RH+A+GDA ATA + L Sbjct: 563 ----LDTVLLSAMLWGQSAPHSLDALTERLGIVIPPEARHTAMGDARATAEAYLRLIAAL 618 Query: 184 AAH 186 A Sbjct: 619 EAK 621 >UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capnocytophaga RepID=C7M4L1_CAPOD Length = 442 Score = 146 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 55/178 (30%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG Y+ ++ + + E + ++ G + Sbjct: 2 YAILDIETTGGKYNEEGITDIAIYQFNGHEITDQFIS-LINPERPIQEFVTKLTGINNKM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + G N AFD I+ + F Sbjct: 61 LRNA----PKFYEVAKRIVEITTDCIIVGHNAAFDYRILQTEFRRLGYDFVRT------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + I E L + LG+PV +RH A GDA AT F L Sbjct: 110 ----TLCTVELSERLIPNKESYSLGKLVRSLGIPVSDRHRASGDALATLKLFKYLLEK 163 >UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGT7_BDEBA Length = 217 Score = 146 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I DLETTG VE+G + G+ + ++ L P A +NG + Sbjct: 14 RFIAFDLETTGTVPGVDQIVEIGAVRFIDGQP-EAIFATLIDPLRPIPPGASAVNGISDD 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ + N FDS + + Sbjct: 73 MVKGK----PLIDTILPAFAEFCGEDVLVAHNAPFDSQFLIADIKKH----------ETT 118 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R L + + L + + L +P N H A DA F + Sbjct: 119 APRGVILDSLPIARKVFPGLPNYKLGTLVQHLKIPTSNFHRAEEDATYLGHMFSQMMKR 177 >UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3L4_MAGSM Length = 237 Score = 146 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 65/188 (34%), Gaps = 17/188 (9%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++LIV+D ETTG D + +E+G + + V A +++G Sbjct: 2 ERLIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGD-ERQWYVNPEREIPADATKVHGIT 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + E ++ ++ N FD + + + Sbjct: 61 DADVAN----SPKFKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRLN------KRLV 110 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + R D A K P LDA+ +RLGV R H A+ DA A + L Sbjct: 111 MPMERAIDTIPLARRKF---PGSTVNLDALCKRLGVDNSGRTFHGALLDAHLLAEVYVEL 167 Query: 180 RHTAAAHL 187 L Sbjct: 168 MGGNQFSL 175 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 145 bits (367), Expect = 6e-34, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A VVDLETTG + + +++G + V GE + + +++ G Sbjct: 16 APIYSVVDLETTGTNVNHGDRIIQIGCVLVQDGEII-NHFETKINPREKIPRSIVQLTGI 74 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + + G + L TF N FD + + P Sbjct: 75 EDKDVRKA----PLFEDIAGTIYSLLAETTFVAHNVNFDFPFLNAELERAGYPSLS---- 126 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + ++ + + L + L + + HSA+ DA ATA + L Sbjct: 127 ------IPAIDTVTLSQILLPTAKSFRLRDLTSSLHIEHDHPHSAVSDAEATADLLNDLL 180 Query: 181 HTAAA 185 Sbjct: 181 KRVQE 185 >UniRef50_A0M2M5 Exonuclease family protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M2M5_GRAFK Length = 223 Score = 145 bits (367), Expect = 6e-34, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 75/186 (40%), Gaps = 14/186 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + IV D ETTG +YD + +G + ++ + +P+ ++I+G Sbjct: 38 RFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFLEQKKFNPETVKIHGI--- 94 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E + A + +++ + + FD ++ + +P ++ Sbjct: 95 -IQNEKFEKLSELEALKKFLSYIQNSVLVAHHAGFDMKMINKALSRNGLP-------KLK 146 Query: 124 HHRLADLAAYAAGKL---NIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L Y ++ ID ++ LD +AE + +++RH+A GDA TA F L Sbjct: 147 NKVLDTSILYKKTRIATNFIDRDKIYSLDEIAEAYNIDLIDRHTASGDAYITALIFMKLL 206 Query: 181 HTAAAH 186 + Sbjct: 207 SRLKKN 212 >UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISI0_RHOCS Length = 699 Score = 145 bits (367), Expect = 6e-34, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 17/182 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +V D ETTGL+ V + + + G L + A + I+G + Sbjct: 506 YVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGITD 565 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + ++ N AFD + ++ + F Sbjct: 566 AMVAEA----PRAEAVLPPFRAFVGDAVLVAHNAAFDLKFLRLKQRAAGVRFDGPV---- 617 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + LD +A RLG+ +V+RHSA+GD+ TA F L Sbjct: 618 -------LDTMILSRQIQGDHGEHSLDGLAARLGIGLVDRHSAMGDSLMTAAIFLRLMDM 670 Query: 183 AA 184 Sbjct: 671 LE 672 >UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=Q16B76_ROSDO Length = 465 Score = 145 bits (366), Expect = 7e-34, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 62/186 (33%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +V D ETTGLD T V++G + V G+ + V P + ++ + Sbjct: 272 TFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPPGSTAVHQISD 331 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + VA + N FD + RQ F Sbjct: 332 AMVADA----PGFDVACRAFHQFAEHAVIVAHNAPFDMAFLRRQCRDQDYAF-------- 379 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLR 180 + L + + + LDA+ +RL +P RH+ +GDA ATA L Sbjct: 380 DNPILDTVH---LSAVVFGGSAEHTLDALCDRLNVHIPDDVRHTGLGDALATAKALVALI 436 Query: 181 HTAAAH 186 A Sbjct: 437 PVLEAR 442 >UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q83YZ1_PEWBP Length = 1492 Score = 145 bits (366), Expect = 7e-34, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 20/191 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 +V+D+ETTG + + + + G+ + F I + + Sbjct: 402 NHNYVVLDIETTGFSKTRDRIISIAAVKIQNGKIIEYFDELINPGKDIKISNLIQRLTNI 461 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNT---FAGSNPAFDSTIVARQRVTYSMPFSPL 117 + L + + D++R N +FD + + + L Sbjct: 462 SDEILLNK----PHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLL 517 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAF 174 + D A N + L+ + + + + H+A+ DA ATA Sbjct: 518 P--------VIDTLTLAQKYFNKI-LKYFSLEKIVKSFKIKLDSEGQYHNALFDARATAL 568 Query: 175 CFDMLRHTAAA 185 F + A Sbjct: 569 IFLEMLEQLEA 579 >UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit family n=14 Tax=Actinomycetales RepID=D1BFZ9_SANKS Length = 616 Score = 145 bits (366), Expect = 8e-34, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 56/182 (30%), Gaps = 13/182 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVDLETTG A E+G + V GE + V + G Sbjct: 61 TFVVVDLETTGGSSKDAGITEIGAVKVRGGEVI-GEFQSLVNPGHPVPAFIARLTGITTL 119 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + ++ RG N FD + + + + + Sbjct: 120 MV----SSAPSIELVLPSFLEFARGTVLVAHNAPFDISFLKAAARSMDLAWPG------- 168 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +++ D A + D L +A + H A+ DA AT L Sbjct: 169 -NQVLDTVPLARRVVTRDEAPNHKLGTLAALFRATITPDHRALSDARATVDVMHALFDRM 227 Query: 184 AA 185 A Sbjct: 228 AP 229 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 145 bits (366), Expect = 8e-34, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 62/182 (34%), Gaps = 20/182 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M++ +V+DLETTGLD VEVGL+ V+ G+ V H V + + G Sbjct: 1 MSRTFVVLDLETTGLDPQADEIVEVGLVRVEDGKP-GAVFHALVRPSRPLPARIKSLTGL 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + V +L G + FD + R G Sbjct: 60 DDADLAER----PDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHA------------G 103 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +L + L+ + L +P H A+ DA A A F L Sbjct: 104 YRATQAYDTVD---LARLVLPGLPSYRLELLCAHLDLPERPGHRAMEDARAAAGLFTALL 160 Query: 181 HT 182 Sbjct: 161 ER 162 >UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Betaproteobacteria RepID=Q21VB4_RHOFD Length = 476 Score = 145 bits (366), Expect = 8e-34, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 59/186 (31%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +++DLETTG + E+ + ++ G+ + V + P + G Sbjct: 1 MLPCYVLLDLETTGGNPVHDRITEIAAVRIENGQEVAR-WSTLVNPGCSISPFIQHLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + L G N FD + + + Sbjct: 60 SNAMVRGA----PGFETVAQHLLALLDGAVLVAHNVRFDHGFLLNELARLDVAL------ 109 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+ L +L + GLDA+ +R G+ + RH A+GD + R Sbjct: 110 -----RVKTLCTVRLSRLLYPQHKGHGLDAIMQRHGIRTLERHRAMGDVEVMQAWLQIAR 164 Query: 181 HTAAAH 186 A Sbjct: 165 QEHGAE 170 >UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0N2_9BACE Length = 1390 Score = 145 bits (366), Expect = 8e-34, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 21/187 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 +++ D+ETTGLD + +E+G + + GE F ++ + +E+ + Sbjct: 368 EVVCFDIETTGLDNRRDVIIEIGAVILRNGEIAETFDTFVS--PGRPLSREIVELTSITD 425 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A ++ A N FD +A Y +PF + Sbjct: 426 KMLEGA----PSQEEAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTS---- 477 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC---FDML 179 + + + LD VAE L +P H A DA A+ F + Sbjct: 478 -------IDTLILAQNLLPDLGKYKLDIVAEHLRLPPFKHHRADADAGMVAYMLVPFFKM 530 Query: 180 RHTAAAH 186 H Sbjct: 531 LEDLGIH 537 >UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bacteroidetes RepID=A6EU25_9BACT Length = 472 Score = 145 bits (365), Expect = 9e-34, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ V+D+ETTG E+ ++ V+ E + + + G Sbjct: 5 TEKFTVIDVETTG-GVGQGRMTEICIITVENMEIVDV-WSSLINPEIYIPQHITALTGIT 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + + +++ R F N FD + ++ FS Sbjct: 63 DQMVTDA----PRFCDVAAIIEEKTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKK--- 115 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + I L + +G+ +++ H A D AT F L Sbjct: 116 --------LCTVRLSRKLIPGLPSYSLSKLCRSIGISLLDAHRAEADTRATTTLFLQLLE 167 Query: 182 T 182 Sbjct: 168 K 168 >UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A497_GEMAT Length = 214 Score = 145 bits (365), Expect = 9e-34, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 60/184 (32%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVD+ETTG E+ ++ V G+ V P + Sbjct: 5 PFAVVDVETTGTRAAGGDRITEIAIVQVQGGQVGEVYSQ-LVNPERPIPPYITSLTHITW 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + V D LRG+ F N FD V+ + + + Sbjct: 64 DMVRDQ----PTFREITSNVLDRLRGSIFVAHNAPFDWRFVSEEVRR-------GSGQEL 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 RL + + + LD V G+ + RH A GDA ATA + + Sbjct: 113 SGPRLCTV---RFARAALPQLSRRSLDHVTRYFGIEIAARHRAAGDALATAHALCRMLNI 169 Query: 183 AAAH 186 A+ H Sbjct: 170 ASEH 173 >UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alphaproteobacteria RepID=B5ZV55_RHILW Length = 245 Score = 145 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 65/185 (35%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYERG 64 I+ D ETTGLD +E+G + + V HI + P A+ ++G + Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGITDEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A E+ + + N FD + + +P Sbjct: 64 LKDKK----PFAEVAEEILTFFGDAKWIAHNATFDMGFINAELARIGLPPILPE------ 113 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R+ D + A K P LDA+ R G+ +R H A+ D+ A + + Sbjct: 114 -RVLDTLSMARRK---HPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGG 169 Query: 183 AAAHL 187 A Sbjct: 170 RQAAF 174 >UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Burkholderia RepID=A9AEP6_BURM1 Length = 398 Score = 145 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 56/178 (31%), Gaps = 17/178 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + L+ VDLETTG E+G++ + V P ++ G Sbjct: 35 EQPLVFVDLETTGGTPAEHRITEIGVVEIGPLGV--STWTTLVNPGQPIPPFIQQLTGIS 92 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + + L G F N +FD + + F+P Sbjct: 93 DAMVRDA----PSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 143 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L + GLDA+ R G+ RH A+ DA + L Sbjct: 144 ------DVLCTVRLSRALFPRESRHGLDALIARHGLVPAARHRALADADLLWQFWRHL 195 >UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO Length = 968 Score = 145 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VVDLE TG + + ++ + + + + + L + Sbjct: 38 QTYAVVDLEMTGTNPNGSERLIQFSCVFTEGNKIV-NTFSTLINPLRKIPEDVQNLTNIT 96 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + + G + L F N D + + P L Sbjct: 97 DKDVK----SAPTFDEVAGTIYALLSDTVFVAHNIELDYRFLNSEFERIGFPKLDLEG-- 150 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + ++ L +A LG + H A DA TA F +L+ Sbjct: 151 --------IDTVQLAQIAFPTLASYRLGDLAHFLGFKHKHPHHADSDAFVTAELFILLQK 202 Query: 182 TAAA 185 A+ Sbjct: 203 KLAS 206 >UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Actinomycetales RepID=A0QF17_MYCA1 Length = 643 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 53/190 (27%), Gaps = 22/190 (11%) Query: 4 QLIVVDLETTGLDY------DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 +VVDLETTG E+G + V G + V+ + P+ M + Sbjct: 39 TFVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDG-VVLGEFATLVDPQRSIPPQIMRL 97 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLR---GNTFAGSNPAFDSTIVARQRVTYSMPF 114 G + ++ G N FD + + + Sbjct: 98 TGITTAMVSDA----PAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAW 153 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 R+ A L+ + L ++A V H A+ DA AT Sbjct: 154 P--------RPRVLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARATVD 205 Query: 175 CFDMLRHTAA 184 L Sbjct: 206 VLHALIERVG 215 >UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria RepID=B1Y7R5_LEPCP Length = 731 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 62/183 (33%), Gaps = 17/183 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 V D ETTGL+ D +++G + G+ V+ P + I+G Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQRPIPPAGIPIHGIKP 600 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + N AFD + ++ + F Sbjct: 601 DMVAGQ----PTIDHVLPAFHAFAQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQPV---- 652 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + E L+A+AER + VV RH+A+GDA TA F L Sbjct: 653 -------LDTLLLSAVVHPNQESHRLEAIAERFSITVVGRHTALGDAMVTAEVFVRLIPL 705 Query: 183 AAA 185 A Sbjct: 706 LHA 708 >UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HRT4_9SPHI Length = 456 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 57/183 (31%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VD+ETTG T E+ + + GE + + + G Sbjct: 2 EFAIVDIETTGGAASTCGITEIA-ILIHDGEKVIEEFESLINPEQDIPTYITGLTGIDNS 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ D L G F + FD V F Sbjct: 61 MVSDA----PTFEELSDKLWDLLHGRVFVAHSVNFDYGFVRACFNAIGREFK-------- 108 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L + I L + E +P++ RH A+GDA ATA FD + Sbjct: 109 ---VDKLCTVRLARKIIPGLSSYSLGRICETQKIPILARHRAMGDARATAILFDQMLKKD 165 Query: 184 AAH 186 + Sbjct: 166 SQT 168 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVD+ETTG D ++ V G+ + + + +++ G Sbjct: 6 TYAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIVETYVSD-INPQREVPERIIQLTGITP 64 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + ++ L G F N FD + + P + Sbjct: 65 ERLKKA----PTFDQVSSKLYKLLSGTVFVAHNVNFDFPFLNGEFQRVGYPELDIEA--- 117 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + ++ + L ++ + + H+A DA ATA +L Sbjct: 118 -------IDTVTLSQILLPTLSSYRLQDLSTYFNIIHNHPHTADSDALATAKLLLILLR 169 >UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gammaproteobacteria RepID=Q21J48_SACD2 Length = 238 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 14/179 (7%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTGL+ +E+G + + + H ++ D A+E++G Sbjct: 4 IVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPEREIDEGAIEVHGITNEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E ++ G N FD + + + Sbjct: 64 LADK----PVFKDIADEFMAFVDGAELVIHNAPFDVGFLNHEFNLLG----RGSTVINDR 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 + D A A K P + LDA+ +R G R H A+ DA A + ++ Sbjct: 116 CSILDTLALARNK---HPGQKNNLDALCKRYGADNSARDLHGALLDAEILADVYLLMTG 171 >UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bacteria RepID=A1BGS1_CHLPD Length = 219 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA ++V+D ETTGL +E+G + V+ GE + + G Sbjct: 5 MADSVVVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLM-NPGFRISRFIESYTG 63 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E +++ G+ N +FD + + + Sbjct: 64 ITNEMLSGQ----PCCEEVMTEFSEFIAGHNIVAHNASFDRRFLDFELKRAKRVYEGACC 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDM 178 + + + L + G+P + H A+ DA TA + Sbjct: 120 -----------CSLLVSRRIYQDSPNHKLQTLVSHAGIPEIGSFHRALADAEMTAHLWMS 168 Query: 179 LRHT 182 + Sbjct: 169 MIDR 172 >UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTI9_9FIRM Length = 828 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 66/182 (36%), Gaps = 17/182 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ VVDLETTG D +++G + ++ G+ L + + I G Sbjct: 7 RIAVVDLETTGSHLDQGDQIIQIGAVLIEDGQVLAQHS-MLLNPERNIPTHITAITGIQS 65 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + G + L+ F N FD T + + + F P Sbjct: 66 DQVQDA----PTFSQVAGLWYERLKDCFFVAHNLGFDLTFLQAKFAEQGLDFQPPA---- 117 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L K+ + L +++ G+ + H A+GDA TA D+L H Sbjct: 118 -------LDTVQLAKIFLPQAPGFNLQDLSQFFGLNFQDAHDALGDARMTAHLLDVLAHQ 170 Query: 183 AA 184 AA Sbjct: 171 AA 172 >UniRef50_B3R0A4 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0A4_PHYMT Length = 1522 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 14/183 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V D+ETTG +E+ + + + V + Sbjct: 413 NMEYVVFDIETTGFSKVRDKIIEISGFKIKNN-IVIDQFYSLVNPEIDLPENIYLLTKIK 471 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + +++ N +FD + + + ++ F L Sbjct: 472 NETLKNA----PKILQVLPDFLKFIKNTCLVAHNASFDVSFIFEKSKQLNISFPLLP--- 524 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A + + + L +A + V + H A DA AT F + + Sbjct: 525 -----VIDTLALSQYYFSSF-MKFFSLKRLAAKFKVKLEEHHRAKDDAKATTEIFMKILN 578 Query: 182 TAA 184 Sbjct: 579 LLE 581 >UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQL3_9ACTO Length = 589 Score = 143 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 54/185 (29%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVDLETTG E+G + V GE++ V + G Sbjct: 43 TFVVVDLETTGAKPGPESITEIGAVKVRGGETV-GEFSTLVNPGQPIPAFITSLTGITTA 101 Query: 64 GLYREALTEQQTAVAWGEVQDWL---RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R + A + ++L A N FD + + + Sbjct: 102 MTARA----PRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTWPSV--- 154 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+ D A A + D L +A G H A+ DA AT + Sbjct: 155 -----RVLDTVALARRAFSSDEVPNFKLSTLAGACGATTAPNHRALDDARATVDVLHAML 209 Query: 181 HTAAA 185 Sbjct: 210 GRLGP 214 >UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Proteobacteria RepID=DPO3E_HAEIN Length = 256 Score = 143 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 19/183 (10%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D ETTG++ Y+ +E+G + + HI ++ DP A++++G Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVHGI 67 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + + D++ G N FD + + ++ + Sbjct: 68 TDEMLADK----PEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDIC 123 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 V + + LDA+ +RLG+ R H A+ DA A + M Sbjct: 124 LV-------TDTLQMARQMYPG-KRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 179 LRH 181 + Sbjct: 176 MTG 178 >UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M5F0_CAPGI Length = 453 Score = 142 bits (359), Expect = 4e-33, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG E+ + D + + D + + G + Sbjct: 2 YAIIDIETTGGKMGEEAITEIAIYRFDGQKVTDRFIS-LINPEKKIDDFVVRLTGISNKT 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + + + N +FD +++ + + Sbjct: 61 VRQA----PKFYEVAKRIVEITEDCILVAHNASFDYRVLSLEFRRLGFDYQRS------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + + L + LG+P++NRH A GDA AT F +L Sbjct: 110 ----TLCTVEMSQRLLPDEPSYSLGKLTRSLGIPLLNRHRANGDAMATVHLFKLLLDRDT 165 Query: 185 AHL 187 + Sbjct: 166 QKI 168 >UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodobacterales RepID=A8LQ52_DINSH Length = 485 Score = 142 bits (359), Expect = 5e-33, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 62/187 (33%), Gaps = 19/187 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 + ++ D ETTGL + ++ V G+ + V A I+G Sbjct: 290 KYVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGIT 349 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + G N FD R++ F Sbjct: 350 DAMVADA----PDFLTAGRAFHGFADGAVLIAHNAPFDMAFFYRKQAEIGARF------- 398 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDML 179 H L + + TE LDA+AERL +P RH+A+GDA AT F L Sbjct: 399 -DHPVLDTV---LLSAVIYGQTEQHSLDALAERLNVTIPEEARHTALGDALATTEVFLKL 454 Query: 180 RHTAAAH 186 A Sbjct: 455 LPMLQAK 461 >UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU82_9GAMM Length = 528 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 16/177 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++++++DLETTG +E+GLL ++ G+ L V+ P ++ G Sbjct: 21 PEKMVLLDLETTGGKATHHRIIEIGLLVIEQGKVLER-WQSFVDPETVLPPFIQKLTGIA 79 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + +L T N FD + + + ++ Sbjct: 80 PSMLRGA----PLFSEVAETLLTYLNDRTLVAHNARFDYGFLKNEFQRIGISYNAKP--- 132 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + + + GLD + +R +P+ NRH A+ DA F Sbjct: 133 --------LCSVKFSRSLYPQFKRHGLDQIIKRFQLPIENRHRALDDAEMIQRFFLK 181 >UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0B3W0_BRUME Length = 234 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYYERG 64 IV D ETTGL+ +E+G + + H + P A+ ++G Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A E +++ G N FD + + + Sbjct: 64 LLDK----PVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARL-------DQAEITS 112 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + D A + LDA+ +R G+ +R H A+ DA A + L Sbjct: 113 EHIVDT--LALARRKHPIGPN-SLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIGG 169 Query: 183 AAAHL 187 L Sbjct: 170 KQTAL 174 >UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Betaproteobacteria RepID=Q0AE35_NITEC Length = 234 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 15/187 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D ETTGLD VE+ + V S H + +D A+ ++G Sbjct: 2 RYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNPGRESDEGALRVHGLSR 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + E +++ N FD + R+ + Sbjct: 62 EFLQDK----PAFQEICSEFLEFIEDAEILIHNAPFDVGFINRELGLIRLEP-----MHN 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLR 180 + ++ D A + P + LDA+ ER + +R H A+ DA A + + Sbjct: 113 YCLQIVDTLMLA---KELHPGKRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMT 169 Query: 181 HTAAAHL 187 + L Sbjct: 170 RGQESLL 176 >UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gammaproteobacteria RepID=Q1QW65_CHRSD Length = 253 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 66/183 (36%), Gaps = 9/183 (4%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG+D +E+G + V H + DP+A+E++G Sbjct: 4 IVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGITNER 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + E A +++RG N AFD + + +G V Sbjct: 64 VADE----PVFADIADAFWEYIRGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPVAD 119 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + L A + LDA+ +R G+ R H A+ DA + + + Sbjct: 120 YCSV-LDTLAMARKLHPGQRN-NLDALCKRYGIDNGRRVLHGALLDAEILSDVYLTMTGG 177 Query: 183 AAA 185 A Sbjct: 178 QTA 180 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 15/177 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D+ETTGL+ + +++ + GE + V+ + + Sbjct: 23 EFVAIDIETTGLNSEWDEIIQIAGMRFK-GEEVVNQFVSLVKPKGKVPKFIEHLTHISPQ 81 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L T + +++ + G N FD + + V + Sbjct: 82 ELK----TAPPIKEVLKDFCNFIGDSILVGHNIGFDFNFLNQFIVDNG-------GFPIS 130 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + G++ + T L + G+ ++N H A DA AT F+ L Sbjct: 131 NMHWDT---AEIGRIYLPFTTDHKLSTLVSFFGIELMNAHQADADALATGKLFNALT 184 >UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma mobile RepID=Q6KIN3_MYCMO Length = 1433 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 17/177 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V DLETTGL +E G + G+ + + V+ K I G Sbjct: 397 NETYVVFDLETTGLSPIFDDIIEFGAQKILNGKVIDTLQFF-VKPNKEISEKITLITGIK 455 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A ++ +++ +T N FD + + Y+ Sbjct: 456 NQDVENAI----SEKEALKKILEFMGDHTVVAHNATFDMNFINEKIEKYNFQE------- 504 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCF 176 + ++ D K+ + L+ +A R G+ H A DA A + Sbjct: 505 -SNLQIIDT--LVVSKIIEPEAKKFSLENLASRSGIIYNSTEAHRADYDADVLAKVW 558 >UniRef50_C8RRD8 Exonuclease n=2 Tax=Corynebacterium jeikeium RepID=C8RRD8_CORJE Length = 198 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 21/192 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + IV+DLETTGL +E+ L++ GE + + + ++ G + Sbjct: 10 QNCIVIDLETTGLRPQEERIIEIAALHIRNGELQDKYT-TLLNPNLSVPQEITDLTGISD 68 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGN---------------TFAGSNPAFDSTIVARQR 107 L + + E+ ++LR G N +FD + + + Sbjct: 69 GLLADK----PTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEI 124 Query: 108 VTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIG 167 + + R + RL A + + + L VA L +P H A+ Sbjct: 125 LRTQLKN-SADANRPYTPRLVCTAEASRTLIPRESVGRYRLGNVASYLKIPHRPLHRAMS 183 Query: 168 DAAATAFCFDML 179 DA AT L Sbjct: 184 DALATYDVLRAL 195 >UniRef50_C9XLH5 Putative DNA polymerase III, epsilon chain n=5 Tax=Clostridium RepID=C9XLH5_CLODC Length = 168 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 14/180 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ +VVDLETTGLD + + E + ++ E+ Sbjct: 2 KEYVVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRLIKPKGIISSFITELTHISN 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E + + + ++ T N FD + + Sbjct: 62 EMVENE----EPLELVLPRFRKYIGDRTIIAHNAKFDLKFLNYYLRMLDLEPI------- 110 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ + + K + + L+ + +N H A D ATA F ++ Sbjct: 111 -NNYICTVELLKKCK--SYKGKNKKLETACAYYNIENINAHRADSDTLATAKLFLKIKDE 167 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 56/182 (30%), Gaps = 16/182 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +V DLETTG+ +E+ L V E + V A ++NG + Sbjct: 56 DNYVVFDLETTGISAVKDDIIEISALKVKNHEQVETFSR-LVNPRRPIPAGATKVNGITD 114 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGR 121 + +E E D++ G G N FD + R + Sbjct: 115 EMVQ----SEPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAA-------DEVCRKA 163 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 V + + L + + L +A+ + H A D C++ + Sbjct: 164 VLNDFIDTLFM---ARALLPGLSRHRLTDLADYFKISSEGAHRAFNDCVMNQICYEHMGK 220 Query: 182 TA 183 Sbjct: 221 LL 222 >UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XIW2_9CAUL Length = 247 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 18/190 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG D +EVG + + H V A+ ++G Sbjct: 1 MARE-IVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPADAIRVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + A ++ D++ N FD + + P T Sbjct: 60 ITDDKVKDA----PKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPLLHET- 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 R D A + P LDA+ +R + +V+R H A+ DA A + Sbjct: 115 ------RWIDTLQLAQKRF---PGMANSLDALCKRYKISLVDRTLHGALIDARLLAEVYL 165 Query: 178 MLRHTAAAHL 187 L+ L Sbjct: 166 ELKGGKERVL 175 >UniRef50_C6CYA2 DNA polymerase III, epsilon subunit n=2 Tax=Bacillales RepID=C6CYA2_PAESJ Length = 244 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 17/187 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGYY 61 ++V DLETTG + + G +++ E + V + +E+ G Sbjct: 59 DIVVFDLETTGFYPSNGDEIISFGAVHMKGLELDESRQFYSLVNPKRRIPRQIIELTGIT 118 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++ D + T Sbjct: 119 NEMVQDA----PDLMQVLHDFMEFIGRRLLIAHAAGHDKQFLNAALWR--------TSKV 166 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LR 180 +HR+ D A K LD + E G+P+ RH A+ D+ TA + L Sbjct: 167 SLNHRVLDTMLVA--KWLEPKRASYALDDLLEDCGIPITERHHALQDSLMTAKLWQQFLV 224 Query: 181 HTAAAHL 187 ++ Sbjct: 225 RILDRNI 231 >UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacter sp. M18 RepID=C6MPJ2_9DELT Length = 835 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYY 61 + +V D ETTGL V + + + G+ H V ++ + Sbjct: 640 EYVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAESTAFHRIE 699 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + + N AFD + +P Sbjct: 700 DHMVADA----PSMNEVYPQFVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLPL------- 748 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 V + L L TE LDA+A+R+G+ + RH+++GDA ATA F L Sbjct: 749 VENPILDTLF---LSVGLHSGTEGHSLDAMAQRMGIAIEGRHTSLGDARATAQIFLGLLS 805 Query: 182 TAAAH 186 Sbjct: 806 LLPGR 810 >UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caulobacteraceae RepID=B4W5N5_9CAUL Length = 241 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 67/190 (35%), Gaps = 18/190 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG D +EVG + + H V P A+ ++G Sbjct: 1 MARE-IVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPERLIPPDAIRVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + ++ +++ N FD + + P + T Sbjct: 60 ITDDKVKDA----PKFHEIADDLIEFIGDAPMIAHNAGFDRNFIDFEYKLCGRPITGET- 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 R D A + LDA+ +R V +V R H A+ DA A + Sbjct: 115 ------RWIDTLKLAQAR--FPGMPN-SLDALCKRFKVSLVERTLHGALIDARLLAEVYL 165 Query: 178 MLRHTAAAHL 187 LR L Sbjct: 166 ELRGGKERVL 175 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 VVD+ETTG + ++ G + ++ + ++ + L + + + G Sbjct: 5 DTYAVVDIETTGGNVASGDRMIQFGCVLLEGDQVVHRFA-TNINPLTSIPKQIEHLTGLS 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + + L G N FD T ++ + MP Sbjct: 64 NKTVAQA----PYFEDIAATIYNLLDGCIIIAHNIQFDYTFLSAELQRCGMP-------A 112 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + ++ + L+ + + + N H A DAA TA F +L+ Sbjct: 113 LQNKGIDTV---ELAQVLLPTESSYRLNDLVSKFNIEHTNPHQADSDAAVTAELFLVLKQ 169 Query: 182 TAAA 185 Sbjct: 170 KLKE 173 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 56/182 (30%), Gaps = 16/182 (8%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG + ++VG + V GE + + A ++ G Sbjct: 25 YSVVDLETTGTSVNHGDRIIQVGCVLVQDGEII-NHFETKINPRVAVPRHITQLTGIKNN 83 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + G + L G F N FD + + P Sbjct: 84 DVRNA----PLFEDIAGTLYSLLSGTIFVAHNVNFDFPFLNAELERAGYPSLS------- 132 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + + ++ + + L + L + + HSA+ DA ATA L Sbjct: 133 ---IKAIDTVTLSQILMPTVKSYRLRDLTSSLSIEHDHPHSAVSDAEATAHLLVDLMKQL 189 Query: 184 AA 185 Sbjct: 190 RE 191 >UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC319F Length = 234 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 17/186 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K + +DLETTGL +E+G + G+ + + + + EI G Sbjct: 1 MIKDFVAIDLETTGLSPYDNKIIELGAVRYRDGKPVD-QYNTLINPGVHIPERITEITGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + +++ + G N FD T +A +S+ +S Sbjct: 60 DDDMVSKA----PYIDDELDRIMEFIGNDVILGHNVIFDYTFIAGALAGHSIEYSAEA-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + K + E + L+ + E + V H A DA + A + L Sbjct: 114 ---------IDTLKFAKKVLPANESKNLEHLCEMFDI-VTIHHRAYEDAMSAANVYFRLC 163 Query: 181 HTAAAH 186 + Sbjct: 164 ELSGEE 169 >UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WA42_ATOPD Length = 342 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 57/183 (31%), Gaps = 20/183 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVDLETTGLD +E+ L V G+ + A IN Sbjct: 75 PESYVVVDLETTGLDVHYCEIIEIAALKVVDGKITE-EFSSLIHPPREIPSGATAINHIT 133 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 + + +++G G N +D+ ++ Sbjct: 134 NHMVKNA----PTLDKVIPQFDTFVKGFPLIGHNSLRYDAIVLEENFFRRDF-------- 181 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDML 179 + + D A L L +A+RL V H A+ D T ++ + Sbjct: 182 -LCDYVWYDTYKLARQILEPP----YKLINIAKRLNVKQHGKAHRALADCYMTYGIYEKM 236 Query: 180 RHT 182 R Sbjct: 237 REI 239 >UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR66_CLOPH Length = 235 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D+E+TGL + +E+ + G+ + + E+ G E Sbjct: 3 FLAIDIESTGLSPEKDRIIEIAAIRYIDGKPKERFEK-LINPGCPLPERITELTGITEDM 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E + + G N + D + + + + + ++ Sbjct: 62 LAGAM----TEREVIKEFLTFAGEDVLLGHNVSVDFSFIKTAADRLKIGYERQGIDTLY- 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + E + L+++ E G+ H A+ DA A A + L Sbjct: 117 ----------LSRTLKSDLEKKNLESMCEHYGIIRECSHRALEDAIAAATLYQKLYEE 164 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 52/177 (29%), Gaps = 16/177 (9%) Query: 8 VDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 +DLETTG + +++ ++ + E + A ++ + Sbjct: 1 MDLETTGHSPANGDRMIQIAIVIMKDWEIERTYTKF-INPGKAIPSFIQDLTHITNEDVK 59 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + + L F N FD + + + +P + Sbjct: 60 D----SYPFEEHADYIYELLADCVFVAHNADFDLSFLQAEFKRAGLP----------KWQ 105 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + K+ + L +A L + + N H A DA ATA F Sbjct: 106 GKKMDTVELAKILFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKCCWKEL 162 >UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C737_9FIRM Length = 204 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 16/181 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 + V+D+ETTGL+ D +EVG + V + + F ++ ++ P+ ++ G Sbjct: 21 PEDYTVIDIETTGLNPDENEIIEVGAVKVRDRKIVDEFSSFVSPKKDI-ISPEIRKLTGI 79 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + Q +++ G G N FD + YS + Sbjct: 80 DEAMIEGA----DQIEDVIPRFNEFIDGEILLGHNVNFDINFLYDNYERYSDFYLSNDYV 135 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + E L+ V ++LG+ V +H A+ D CF+ R Sbjct: 136 DL----------LKISRKLSPEFENHKLETVLKKLGIKVDQQHRAVSDCIDAHHCFEKYR 185 Query: 181 H 181 Sbjct: 186 E 186 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 59/175 (33%), Gaps = 16/175 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M K+ +VVDLETTG +E+G+ ++ G+ + V P ++ G Sbjct: 1 MEKKFVVVDLETTGHSIKSGDEMIEIGVAVIEDGQITERLS-AFVRPQKPIPPFISQLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + A V L G F N FD T + V Sbjct: 60 ITDEDVAQA----ESFATIAPRVLQLLDGGVFVAHNVQFDLTFLNEALEEEGYLPYTGPV 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + ++ + E L + E L + H A DA ATA Sbjct: 116 ----------IDTVELARILLPTAESHSLSHLTEALQLTHHEAHRAGSDAEATAE 160 >UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, putative n=28 Tax=Streptococcus RepID=Q04L99_STRP2 Length = 816 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 17/183 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VVDLE T A ++VG++ ++ GE + V D E+ G + Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQVGIVVIEDGEIVDHYT-TDVNPHEPLDAHIKELTGLTD 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + + ++ D + F N FD+ ++A + Sbjct: 64 QRLAQA----PDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE--------L 111 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + R+ + ++ E L + LG+P+ + H+A+ DA ATA LR Sbjct: 112 RNPRVDTV---ELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREK 168 Query: 183 AAA 185 A Sbjct: 169 MAQ 171 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 54/188 (28%), Gaps = 19/188 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + V+DLETTG + ++VGL +D + V ++ G Sbjct: 2 KFAVLDLETTGHSV-SDDILQVGLAVLDDNLEIVETYSSFVRPTIEIPAFITQLTGIDAD 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ +L N FD+ + + Sbjct: 61 MVADA----PELDEVLMQLIPYLEDAVLVAHNVNFDAGFLNQALDRCGYHPFIG------ 110 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF----DML 179 L ++ L AV E G+ H A DA ATA F L Sbjct: 111 ----RRLDTIELLRILYPSITTYQLGAVTELFGIAHDQHHRADSDAIATAELFAQSVQKL 166 Query: 180 RHTAAAHL 187 R L Sbjct: 167 RQLPLLTL 174 >UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X67_LACSS Length = 944 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 57/188 (30%), Gaps = 18/188 (9%) Query: 1 MAKQ--LIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M ++ VVDLETTG + D ++ G V G+ + V L K + Sbjct: 1 MNRETIYAVVDLETTGTNIKDGDRIIQFGCALVQNGKII-QTISQDVNPLRDVPTKIQHL 59 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 L + + L G F N FD + + + Sbjct: 60 THITADQLE----LAPIFEDLAPTLVEILSGTVFVAHNINFDLPFLNGELTRVGLQPLD- 114 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 LA + ++ + L + + L + N H A DA TA F Sbjct: 115 ---------LAGIDTVELAQIILPEAPSYRLQDLTQLLEIEHDNPHQADSDALVTAKLFL 165 Query: 178 MLRHTAAA 185 L A Sbjct: 166 KLSARLQA 173 >UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlamydiaceae RepID=B0B7H7_CHLT2 Length = 232 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 20/183 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 LI D ETTG D VE+ + V +A +I+G Sbjct: 4 LIFYDTETTGTQIDKDRIVELAAY----NGTTSESFQTLVNPEIPIPAEATKIHGITTAE 59 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRV 122 + + A+ + ++ + N FD ++ R+ + + Sbjct: 60 VADA----PRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRRHGL---------- 105 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 +L + + K L + + G H A+ D F L Sbjct: 106 SEPQLRTIDSLKWAKKYRTDLPQHSLQYLRQVYGFEENQAHRALDDVITLYRVFSALVGD 165 Query: 183 AAA 185 + Sbjct: 166 LSP 168 >UniRef50_C6WZM7 DNA polymerase III epsilon subunit n=2 Tax=Flavobacteriaceae RepID=C6WZM7_FLAB3 Length = 407 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D+E+ G + +E+ + D E + V + P ++ + Sbjct: 2 YSVIDIESNGAGFRKESIIEIAVYKYDGHEIVDQFIS-LVNPESEITPFVQKLTKISPKM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + T + V + R G N FD ++ ++ F Sbjct: 61 VK----TAPKFPEIARRVIEITRNTILVGHNIDFDYRMLRQEFKRLGYDF---------- 106 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L K I E L + + LG+P+V++H A GDA AT F +L Sbjct: 107 -TINTLDTIPLAKKLIPEAESYSLGKLVKSLGIPLVDQHRASGDARATLDLFKLLL 161 >UniRef50_A4C086 DNA polymerase III subunit n=2 Tax=Polaribacter RepID=A4C086_9FLAO Length = 361 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG ++ E+ + D + V + + G + Sbjct: 2 YAILDIETTGGKFNEEGITEIAIYKFDGHSVVDQFIS-LVNPEKEIQQFVVRLTGINNKM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + + + T N FD I++ + F+ Sbjct: 61 LR----SAPKFYEIAKRIIEITKDCTLVAHNTTFDYRILSTEFDRLGYDFNRN------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L K I L + + LG+P+ +RH A GDA AT F +L Sbjct: 110 ----TLCTVELSKQLILDQPSYSLGKLTKALGIPMTDRHRASGDALATVQLFKLLLEK 163 >UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA Length = 307 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 21/188 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + V+D ETTGL +E+G+L V E + ++ D + G Sbjct: 18 LIDDYCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDR-YDQLIKPSIEVDGFITALTGI 76 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + +V ++ + G N +FD + Sbjct: 77 TNDMLEDM----PSISSVKNDVLSFISEDIILGHNTSFDMRFLNEGFK-----------E 121 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ + + + + L + + LG+ N H A+ D AT +D ++ Sbjct: 122 QLSNQYMDT---MQFARKLYPELKHHRLSDLTDYLGL-HNNEHRALADCIATKELYDAVK 177 Query: 181 -HTAAAHL 187 +L Sbjct: 178 SRMVEKNL 185 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 19/181 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +DLET+GLD +E+GL+ + G+ + + K + G + Sbjct: 4 FVALDLETSGLDCLQDEIIEIGLVKMVDGKEID-SFSTLIRPKGILPVKIKRLTGIKDHE 62 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + ++ G N FD ++ + + Sbjct: 63 LQDA----PKLQEVLPVILQFIADLPLVGHNVKFDYDFLSTAVQ-----------SPLAN 107 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 K + L + LG+ + N+H A+ DA A L + Sbjct: 108 PLYDT---LELSKYLMPGASNHRLGYLCSYLGIDIPNQHRALDDARGAAMLLIHLLNQCE 164 Query: 185 A 185 Sbjct: 165 E 165 >UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruegeria RepID=Q1GL30_SILST Length = 479 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 60/185 (32%), Gaps = 18/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 +V D ETTGL VE+ V G L V+ + +I+G + Sbjct: 273 FVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTKIHGVRDA 332 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + D+ + N FD ++ +Q V + Sbjct: 333 DVAQ----SPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQQEVQTGCSW--------D 380 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS--AIGDAAATAFCFDMLRH 181 H + + L + LDA+ RL + + RH A GDA ATA L Sbjct: 381 HPVVDTV---LLSALVFGISADHSLDALCSRLSIEIPARHRHTAKGDARATAEALIRLLP 437 Query: 182 TAAAH 186 Sbjct: 438 LLQGK 442 >UniRef50_C3RPR6 3'-5' exonuclease n=2 Tax=Bacteria RepID=C3RPR6_9MOLU Length = 443 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 17/183 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + VD+ET +Y +G++NVD + V+ A D +E+ G Sbjct: 1 MEQSITFVDVET--PNYQNNSISSIGVINVDGDGVVTTKYF-LVDPEAHFDRFNIELTGI 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W E++ + + N FD +++ Y +P P+ Sbjct: 58 TPEMVADQ----PNFKEVWSEIEPYFTNSLVVAHNAVFDLGVISACLQRYDLPIFPIFY- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 Y + P+ L+ ++ V + N H+A+ D+ A F L Sbjct: 113 ---------TCTYRISRALKIPSNSYKLNDLSSYYHVTLDNHHNALADSKACMEIFYYLL 163 Query: 181 HTA 183 Sbjct: 164 KEP 166 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 60/188 (31%), Gaps = 18/188 (9%) Query: 1 MAKQ--LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M K VVD+ETTG D +++G + V + + V L + Sbjct: 1 MDKDTVYAVVDIETTGTSVTDGDRIIQIGCVFVQHNQVI-NHFETDVNPLKEIPAAISRL 59 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + + G + L F N FD + + P P Sbjct: 60 TGITNKRVRHA----PLFDDVAGTLYSLLTNTVFVAHNVNFDLPFINAELERVGYPALP- 114 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 +A + + ++ + L ++ + N HSA DA+ATA F Sbjct: 115 ---------IAAVDTVSLSQILLPTATSFRLRDLSRLFNIEHDNPHSADSDASATAELFI 165 Query: 178 MLRHTAAA 185 L A Sbjct: 166 FLFRRLRA 173 >UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFC5_9ACTN Length = 291 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 14/181 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +VVD+ETTGL+ + +E+ + V G V ++ G Sbjct: 124 LPSEYVVVDIETTGLNPNKDEIIELAAIRVRGGRETD-AFQCLVRCGGELSDAIAKLTGL 182 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L E L A +++ + N FD + Sbjct: 183 SHSRLMAEGLI---LENALMNFLEFVSDDLIVAHNAEFDIGFIQSACEELDWDDFDNDY- 238 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L A + + L ++AERL + H A+ D T L Sbjct: 239 ---------LDTLALARKKLPQISDHRLSSLAERLHLENRQPHRALSDCRLTHCLLVKLN 289 Query: 181 H 181 Sbjct: 290 E 290 >UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHD8_9FIRM Length = 269 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 60/187 (32%), Gaps = 17/187 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 + I+ D ETTG + + + ++ GE V + ++ G Sbjct: 77 RYIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSIPQAVCDLTGIT 136 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + D++ + N FD + + + T Sbjct: 137 DDMVADKCG----ICSVLSDFLDFIGDSVLVAHNAEFDLAFLN-------IKLNWYTQTE 185 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD-MLR 180 +++ + Y G+ LD + V RH+A+GD+ TA F L+ Sbjct: 186 IYNPVIDT---YKLGRALYPQLLSHDLDTLIRHHRVKERPRHTALGDSLMTAEIFLDYLK 242 Query: 181 HTAAAHL 187 + Sbjct: 243 KLEKEEI 249 >UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neorickettsia RepID=C6V4W1_NEORI Length = 228 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 16/188 (8%) Query: 3 KQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +++D ETTGLD + +E+G + + + HI + +A ++G Sbjct: 4 RRKVILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPEREISKEATRVHGIT 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + ++ + N +FD + + + Sbjct: 64 FEQLAD----SPKFIDIADDFLQFIGSSEIVAHNASFDIRFLNSELIRARQRRLIKLENV 119 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + A + + LDA+ R + + R H A+ DA A + L Sbjct: 120 ID--------TLAMARKIFPGSP-ASLDALCRRFRISLEQREFHGALLDAQLLARVYIEL 170 Query: 180 RHTAAAHL 187 + + Sbjct: 171 SKGSQVSM 178 >UniRef50_C5B532 DNA polymerase III epsilon subunit n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B532_METEA Length = 248 Score = 140 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 63/186 (33%), Gaps = 16/186 (8%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++++V D ETTG D +EVG + + G H V A I+G Sbjct: 4 SQRIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFRTGRHFHSYVNPERPVPADATAIHGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L A ++ +++ + N FD + S+P Sbjct: 64 TDEMLKDA----PVFAAVAADIVEFIADSPAIFHNAPFDLGFFDLEFGLLSLP------- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 R + + + GLDA+ R G+ R H A+ D+ A + Sbjct: 113 --SLDRSRVTDSLVHARKLLPAGAKAGLDALCNRYGIDRTRRTKHGALMDSELLADVWLA 170 Query: 179 LRHTAA 184 + T Sbjct: 171 MTGTGG 176 >UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function n=3 Tax=Proteobacteria RepID=Q3IIS2_PSEHT Length = 237 Score = 140 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 14/184 (7%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG+D +E+G + + H+ + ++ +A++++G Sbjct: 1 MARRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRNSEEEAIDVHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E D+++G N FD + + + + Sbjct: 61 ITNEFLRDK----PLFHQIAQEFFDYIKGAELVIHNAPFDIGHMDNEFSLLNQGYPKTAT 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 ++ D A ++ P + LDA+ R V R H A+ D+ A + Sbjct: 117 F----CQVLDTLKMA---RDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYL 169 Query: 178 MLRH 181 + Sbjct: 170 AMTG 173 >UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha H16 RepID=Q0JYK3_RALEH Length = 220 Score = 140 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 14/184 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++ +V D+ETTGLD + +E+G + V+ + + + V+ K E+ G Sbjct: 48 LPERFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVLVKPSRKVPKKITELTGI 107 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + E ++ A + + N FD +++ S+ F+ Sbjct: 108 TPEMIEAEGVS---LESAVQDFAKFAGNLRLVSFNAEFDMAFISKAAGKSSITFANPVS- 163 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 A + + L +A+ + + H A+GD A + Sbjct: 164 ----------CALKMSRRAWPDRKSYRLAEIAKDGNLDTSDMHRALGDCQRAAIVYCAAA 213 Query: 181 HTAA 184 Sbjct: 214 SRLG 217 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 140 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 14/178 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +DLETTGLD++ +EV L+ + GE + + P + G + Sbjct: 7 FVALDLETTGLDFEKDEIIEVALVRFENGEPKENLDFLVKPSAVELRPFIETLTGISKAD 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A G++ ++ N FDS + + + + Sbjct: 67 LESAS----DFATIAGQICSFVGDLPIVAHNAVFDSKFLKQTFTKVGISYDSHVFWD--- 119 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + ++ LD + + L + H A+ DA A F Sbjct: 120 -------SLTLSRIAFQDVPNHRLDTLVQELNIERSRAHRALPDADACGRLFVKALEK 170 >UniRef50_C4GLS9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLS9_9NEIS Length = 464 Score = 140 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 62/184 (33%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++++DLETTG + E+ L+ G+ + ++ G + Sbjct: 23 PVVILDLETTGGHFYADRITELAFLHFWQGKITAVQQLVQPN--MPISGFVRDLTGISDE 80 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A +V LRG+ N FD T + + F+ Sbjct: 81 MLQGQ----PTFAQFAPQVLPLLRGSLLIAHNSRFDYTFLRHECRRNGFAFATAG----- 131 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + LD++ ER G+ V +RH A+ D A A + Sbjct: 132 ------LCSVQLSRKLYPEFFKHNLDSIIERHGLAVASRHRAMSDVLAVAEYLQLALREK 185 Query: 184 AAHL 187 A L Sbjct: 186 GAPL 189 >UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB Length = 484 Score = 140 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 59/185 (31%), Gaps = 18/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 V D ETTGL V++G + V G + V+ + ++G Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVSTA 336 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A A E + N FD + R + + Sbjct: 337 MVQGA----PDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLAW--------D 384 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 H L + + + LDA+ ERL + + H+A+GDA ATA + Sbjct: 385 HPILDTV---LLSAVLFGASVPHTLDALCERLDITIPPALRHTALGDAQATACALVQMIP 441 Query: 182 TAAAH 186 A Sbjct: 442 MLQAR 446 >UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=C0DA77_9CLOT Length = 255 Score = 140 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 53/184 (28%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +D+ETTGL+ E+ L V G + V + +E+ G Sbjct: 13 TNSYVAIDIETTGLEPRLDKITEIAALRVVDGA-VEGRFVTLVNPGRPLGERIVELTGIT 71 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L G + + G N FD + + R V + F + Sbjct: 72 DGMLAGA----PAIGDVIGPLVRFCGDLPLLGHNILFDYSFLKRAAVNQGLDFQREGIDT 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + L A + V H A DA + + L Sbjct: 128 LN-----------LCRAFMPGEHKKNLSAACAFYCIEQVEAHRAEADALSAHLLYQKLLE 176 Query: 182 TAAA 185 Sbjct: 177 GRGE 180 >UniRef50_Q48KX3 DNA polymerase III, epsilon subunit n=35 Tax=Proteobacteria RepID=Q48KX3_PSE14 Length = 259 Score = 140 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 13/179 (7%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG+ D +E+G + + H+ ++ +D A+ ++G Sbjct: 11 IVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITNEF 70 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + A E ++++G N AFD + + H Sbjct: 71 LVGK----PRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQ---H 123 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 + D A + P + LDA+ +R GV R H A+ D+ A + + Sbjct: 124 CSILDTLMMARER---HPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTG 179 >UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRP3_9BACT Length = 193 Score = 140 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D+ETTGL VE+G + G V +A+ I+G + Sbjct: 10 FVAIDVETTGLSNRWDRIVEIGAIRFTPGSETE-SFQTFVSPGRPIPSEAVAIHGITDEM 68 Query: 65 LYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + A + +L+ NP+FD + ++ + V Sbjct: 69 VEGA----PGLSEASIALASFLKDEEPMVFHNPSFDLGFLDANMRAIKGSWNVMPVFDTC 124 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + L A+A G+ H A+ D +A F+++ Sbjct: 125 G----------LARKAFPGIKGYSLVALARHFGLSGGGHHRALEDCRYSASLFNLILE 172 >UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQP7_9ACTO Length = 286 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 18/173 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVD+ETTGL + VE+ L+ ++ G + V+ DP ++ Sbjct: 36 PFVVVDVETTGLSSTSDRIVEIALVRIEGGRVVD-EWATLVDPGRDPDP--TFVHHITAE 92 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A GE+ L G N F+ +A++ + Sbjct: 93 MLSGA----PTFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGI----------S 138 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L + + + L + G+ + + H+A+GD ATA Sbjct: 139 TAPLPAVCTLRLARQVL-AAPNFQLVSCCTVYGIELHDAHTALGDTRATAQLL 190 >UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synergistaceae RepID=C9M9P8_9BACT Length = 208 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 15/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D+ETTGL + +EVG L G+ ++ I+G + Sbjct: 12 YVALDIETTGLSPRSCSIIEVGALKFVPGKKGE-EFSSLIDPGCPIPASGRSIHGITDDM 70 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + + D++ N FD + +A + +TV Sbjct: 71 VAGQ----PRVEEVIAGLLDFVGPAPLVLHNAPFDLSFIAPVLDKLGRKWQAMTVFD--- 123 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ L+++++ H A+ D T F Sbjct: 124 -------TLPLSRVAFPGLRSYSLESLSDFFEFKEGVHHRALCDCWYTQQLFTRFLEK 174 >UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gammaproteobacteria RepID=Q5ZVQ6_LEGPH Length = 251 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 15/179 (8%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTG+ + +E+G + + + HI + D A ++G Sbjct: 22 VILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTEF 81 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E ++ G+ N FD + + + Sbjct: 82 LQDK----PLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDY----- 132 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 R+ D A K P + LDA+ +R + NR H A+ DA A+ + + Sbjct: 133 CRILDTLILAREK---HPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTG 188 >UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=C6A933_BIFLB Length = 188 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 58/178 (32%), Gaps = 14/178 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I +DLETTG E+G + V G+ + V + E+ G Sbjct: 11 YISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQ-LVNPGRRVSARITELTGISNEM 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + G+ W + G N FD + + + +V + Sbjct: 70 LEDQ----PVIEDILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPIDT 125 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + P+E L + +R G+ V H A+ DA T C + R Sbjct: 126 MHID---------RLLFPSERHRLVDLIQRYGIGDVEEHRALSDATQTYQCLEWQRRY 174 >UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria RepID=DPO3_STRPF Length = 1465 Score = 139 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V D+ETTGL +++ + G + ++ E+ G Sbjct: 424 EATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVE-QFDEFIDPGHPLSAFTTELTGIT 482 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L QD+ + + N +FD + + +P + Sbjct: 483 DKHLQGAK----PLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLP-------K 531 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + GL + +R V + + H A DA AT + Sbjct: 532 ITQPVIDT---LEFARNLYPEYKRHGLGPLTKRFQVSLDHHHMANYDAEATGRLLFIFLK 588 Query: 182 TAAAH 186 A Sbjct: 589 DAREK 593 >UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helicase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC75 Length = 958 Score = 139 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 50/179 (27%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + V+D ETTG + ++VGL ++ S+ V V P + G + Sbjct: 2 KFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLTGISDS 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E+ L G N AFD + Sbjct: 61 DVADA----PSLEEMMMELVPMLDDVVLVGHNVAFDFNFLQNALDRCGY-------LPFS 109 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + L V+ G+ H A DA ATA+ Sbjct: 110 GRILDTMHFLK---ICFPSLPSYQLGMVSSHFGLEHDRPHQADSDALATAYALLKCLEE 165 >UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bacteria RepID=Q0HVL5_SHESR Length = 239 Score = 139 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 54/186 (29%), Gaps = 18/186 (9%) Query: 2 AKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A L+V+D ET+GL + A +E+G + ++ G+ + + + G Sbjct: 37 ANTLVVLDFETSGLSPNQGARAIEIGAVLIEQGQITARFSELM-NPGFRINSFIEDYTGI 95 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L A A ++ + N AFD + + + Sbjct: 96 SNQMLAHAA----PCAEVMARFAAFIGKHHLVAHNAAFDQRFLDAEFAQIGHQYPGQFG- 150 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDML 179 + + L + +P H A+ DA T + + Sbjct: 151 ----------CSLLLARRLYPEAINHQLATLVRHKQLPTDGTFHRALADAEMTGHLWLRM 200 Query: 180 RHTAAA 185 Sbjct: 201 LADLKQ 206 >UniRef50_B0UD78 DNA polymerase III, epsilon subunit n=5 Tax=Alphaproteobacteria RepID=B0UD78_METS4 Length = 238 Score = 139 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 63/189 (33%), Gaps = 14/189 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M ++ IV+D ETTG D T VE+G + + H + A+ ++G Sbjct: 1 MLRE-IVLDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQRPVSQGALAVHGL 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + A D+ TF N AFD + + P Sbjct: 60 ADAFLADK----PPFAAILPAFLDFCGDATFVIHNAAFDVGFLNAEYARLGDAAPP---- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + D A + LDA+ R G+ R H A+ DA A + Sbjct: 112 AIDLAGVVDT--LALARRKHPNAAN-NLDALCARYGIDNSRRTKHGALLDAQILAEVYIE 168 Query: 179 LRHTAAAHL 187 L L Sbjct: 169 LLGGKQTSL 177 >UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIT4_RHOM4 Length = 616 Score = 139 bits (350), Expect = 6e-32, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 17/172 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 V D ETTGL + + +G + + G V ++ ++G Sbjct: 422 YTVFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPRRPISLDSVRVHGIQP 481 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + R G N AFD + ++ + F Sbjct: 482 VLLQDK----PPIEEVLPRFYRFARDTVLVGHNVAFDLKFIRQKEKALGLRFDQPV---- 533 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 L + + GLD +A G+ V RHSA+GDA TA Sbjct: 534 -------LDTMLLAAVVDPERQHYGLDELAAAFGIEPVGRHSALGDALITAE 578 >UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysipelotrichaceae RepID=C8NZK8_ERYRH Length = 1433 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 53/186 (28%), Gaps = 17/186 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + DLETTGL +E G + ++ G + ++ P E+ Sbjct: 381 QTGSYVSFDLETTGLSNYYDHIIEFGGVLIENGRVV-KKMQTFIKAPVPVRPFIQELTNI 439 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L A E+ ++L + N FD + Sbjct: 440 TDADLVNA----PSIEEAMDEILEFLGDHVLVAHNAQFDIDFIQETLRRIGKEP------ 489 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDM 178 + + + L + D L ++A + + H A DA + F Sbjct: 490 -IQNAVIDTLD---LSRALFDNRRSYRLGSIARFMRIGYDEGVAHRADYDAEVLSLVFLE 545 Query: 179 LRHTAA 184 + Sbjct: 546 MLRLEQ 551 >UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NF23_9LACT Length = 875 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ V+DLETTG Y+ + G + + + + + + + + G Sbjct: 1 MHRKYAVIDLETTGPKYEQGDRIFQFGCTLITDHKIVE-HITLNINPEQSIPFEIQLLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMPFSPLT 118 + + + + L G T N FD + + Sbjct: 60 VTNADVEKA----PYFDEVAMNIYNLLEGRTLVAHNVGFDGPFIITALKEALGIELE--- 112 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + ++ L + L +P H+A DA ATA F + Sbjct: 113 --------VPFIDTVQLAQICYPSAISYRLSDLTNMLKIPHTQVHTAGSDARATAQLFLI 164 Query: 179 LRHT 182 L+ Sbjct: 165 LQEK 168 >UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSB2_CHLT3 Length = 578 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 15/177 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG +E+ + G+ + + V + G Sbjct: 23 TFAVVDLETTGGLKPENRIIEICAIKCRNGQEVGMLES-LVNPEQQISYFISQYTGITNS 81 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +V ++ + F N FD + + Sbjct: 82 MVDNA----PVIQSLLTKVSEFFQETIFVAHNVPFDMGFINMELERNGYAKLTN------ 131 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + + + + L +A+ G+ V NRH A GD AT L Sbjct: 132 ----RWLCTFRLARRLLPTQQKKNLGDLAKYFGIIVENRHRARGDCEATIKLLAELI 184 >UniRef50_A4SZE6 DNA polymerase III, epsilon subunit n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SZE6_POLSQ Length = 466 Score = 138 bits (349), Expect = 8e-32, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 52/175 (29%), Gaps = 17/175 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 L VD+ETTG +D E+G+ + + + + G Sbjct: 9 PDLAFVDIETTGSHFDRDRITEIGIKTLANDGIQVWER--LINPQTFIPQNIQRLTGISP 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + E++ L G F N FD + + F P Sbjct: 67 QMVEGQ----PSFDQVAKELKQELEGKIFVAHNARFDYGFIKASFKRVGIDFKPKV---- 118 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L +L LD + G+ V RH A+GDA + Sbjct: 119 -------LCTVKLSRLLFPEQPRHNLDTIINAHGLQVSARHRALGDADLLLQFWR 166 >UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=A0K225_ARTS2 Length = 406 Score = 138 bits (349), Expect = 8e-32, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 15/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M VVD+ETTGL E+ +++VD ++ V P+ I+G Sbjct: 1 MNAGFAVVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETLVNPQRDLGPQ--HIHGI 58 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L +V + L G N FD V+ + + Sbjct: 59 R----AADILHAPVFGDIAHDVMELLAGRVLVAHNVHFDYRFVSHELGRAGLELPFE--- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + L + G+ + N HSA DA A A Sbjct: 112 -----VHDCLCTMKLARRYLPGAGR-SLKDCCDSFGLNLANAHSAGDDAEAAAHVLSNYL 165 Query: 181 HTAAAH 186 + + Sbjct: 166 RMDSGN 171 >UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4 Length = 922 Score = 138 bits (348), Expect = 9e-32, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 60/182 (32%), Gaps = 16/182 (8%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ ++VD+ETTG+ + +++ + ++ + + + V + P + Sbjct: 2 ERFVIVDVETTGVSFIKGDRIIQIAFVVIEGKKIIDR-FNSYVNPMRDIPPFIRSLTNIN 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + L G F N FD + + + Sbjct: 61 DNEVKDA----PTFDLVAPRLLQALDGAFFVAHNVDFDLSFINEELHALGY-------TG 109 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + K+ + L ++E L + H A DA ATA F + Sbjct: 110 LSGPVIDTV---ELSKIAYPTADGFRLSQLSESLHMNHDQPHRADSDAEATALIFLEIMD 166 Query: 182 TA 183 Sbjct: 167 KL 168 >UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUD4_XYLCX Length = 547 Score = 138 bits (348), Expect = 9e-32, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 59/174 (33%), Gaps = 16/174 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL +EV +L +DT + A I+G + Sbjct: 49 FAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWSTRLNPQRTV--GATWIHGITDAD 106 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A +V L G F G N FD+ V + T+ Sbjct: 107 VAHA----PSFADVAAQVAQRLTGAVFVGHNARFDAGFVLAELTRAGWDAPEPTIW---- 158 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 AA + L VA G+ + + HSA+GDA ATA Sbjct: 159 ------CTQAASHHWLPDASSRRLVDVAAAAGISLTHAHSALGDARATAAMLTR 206 >UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acidithiobacillus RepID=B5EMD9_ACIF5 Length = 248 Score = 138 bits (348), Expect = 9e-32, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA + +V+D ETTG+D+ +E+G + + + ++DP+A+ I+G Sbjct: 1 MAVRQVVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQRSSDPEALRIHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + A ++L N FD + + V Sbjct: 61 LTDEFLQDQ----PGFAEVADAFLEFLGDAELIIHNAPFDLGFLNHELQLAGKAPLRQAV 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + A + + L+++ R V +R H A+ D A + Sbjct: 117 ----------MDTLADARRRHPGQKN-DLNSLCRRYSVENSHRELHGALLDTRILAEVYL 165 Query: 178 MLRH 181 + Sbjct: 166 AMTG 169 >UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Neisseria RepID=Q9JYS6_NEIMB Length = 470 Score = 138 bits (348), Expect = 9e-32, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 17/169 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLE+TG + EV L+ + G + V + G + Sbjct: 29 PVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQKPIPQFVAGLTGISDG 86 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A GE+ L+G N FD T + + + FS Sbjct: 87 MVADA----PVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA----- 137 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 L + + LD++ ERLG+ V +RH A+ D +A Sbjct: 138 ------LCSVQLSRCLYPQFYKHSLDSIIERLGIVVEDRHRAMADVSAL 180 >UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales RepID=C4PPS2_CHLTJ Length = 250 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 15/180 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D ETTGLD +E + E + V + A ++ +I+ + Sbjct: 8 EFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVEF-LIHPERAVSAESQKIHKISDA 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + + ++ + + G + FD +++++ Sbjct: 67 MLRDK----PKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLG------ETLLP 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 HH + D A + L+A+A VP H A+ D F L Sbjct: 117 KHHYVIDTLRLA---KEYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMNVKVFKHLTKR 173 >UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY86_DICNV Length = 233 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 21/190 (11%) Query: 1 MAKQLIVVDLETTGLD------YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA 54 M+ + ++ D ETTG++ + +E+G + + H + DP+A Sbjct: 1 MSFRSVIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPEQPVDPQA 60 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMP 113 +++G + L + E + +L N AFD + R+ Sbjct: 61 FKVHGISDEFLADK----PFFKDVLPEFEAYLASADELVAHNIAFDRQFIDRELQLAGCD 116 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAA 171 + + + + + LDA+ +R GV R H A+ DA Sbjct: 117 YRLGDKFTL-------VDSLKIAREKFAGARN-NLDALCKRFGVDNTGRELHGALLDAQL 168 Query: 172 TAFCFDMLRH 181 A + L Sbjct: 169 LAEVYLKLTG 178 >UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propionibacterium acnes RepID=D1YAF0_PROAC Length = 633 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 51/181 (28%), Gaps = 14/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG + + E+G + V G + V + + G + Sbjct: 67 TFCVVDLETTGTS-EGSQITEIGAVKVCGGR-VEGEFQTLVCPTGSIPASVQVLTGITDV 124 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ R N FD + R + P+ Sbjct: 125 MVR----SAPSLNAVLPSWSEFSRSTALVAHNARFDIGFLQRAYAQHDYPW--------D 172 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D A A L L ++ H A+ DA AT L Sbjct: 173 DPAVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLHGLIDRV 232 Query: 184 A 184 Sbjct: 233 G 233 >UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTS6_BACTU Length = 286 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 53/183 (28%), Gaps = 18/183 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ETT E+G + G+ + + ++ G Sbjct: 19 FVVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDKYSQ-LINPEMKIPANITKLTGITND 77 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDS-TIVARQRVTYSMPFSPLTVGRV 122 + + Q ++ G N FD + + Sbjct: 78 MVQGK----PVYGQVLPVFQQFIDGFLVVAHNAKFDWNRFLLFYFEKVGI---------- 123 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 H + L + A + LD G NRH A DA AT +C L+ Sbjct: 124 -HPKNEVLDSVAVFQHFCPNKGKYKLDDFCTTFGYLNKNRHRAYEDAEATGYCLLELKRR 182 Query: 183 AAA 185 A+ Sbjct: 183 FAS 185 >UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiaceae RepID=B4S8Q4_PROA2 Length = 180 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 26/185 (14%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++I VD+ETTGL +EV + + G + + A +I+G Sbjct: 10 SGRVIAVDVETTGLSPRRGDRVIEVAAVAIVNG-VIEEHFCCLINVNAPIPTVVQKIHGI 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L E W E ++ N N FD + + + + + Sbjct: 69 TPELLAGEKPP----EAVWPEFLKFIGSNILIAHNAPFDISFIRNELRFLGLSLLNGS-- 122 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL------GVPVVNRHSAIGDAAATAF 174 A + + L+ VA + G+ + H A GDA TA Sbjct: 123 ---------QCTLAFSRKKFPQLKNHKLENVARHVLGGMPKGIKL---HRASGDALLTAM 170 Query: 175 CFDML 179 + ++ Sbjct: 171 IWQVI 175 >UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVH7_9AQUI Length = 215 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 73/188 (38%), Gaps = 22/188 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D ETTGLD A V +G L V + ++EI+G Sbjct: 39 TFVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFHRFVKPKELTRVSVEIHGITPH 98 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ-RVTYSMP--FSPLTVG 120 L ++A + + + +++RG+ G N FD IV + +P L V Sbjct: 99 ELEKKAESHDR---VLEDFMEYVRGSVLVGFNVEFDRKIVEKYSLKVLGLPLLNYRLDVF 155 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+W R L +AE LG+PVV HSA+ DA TA F L Sbjct: 156 RLWKKR---------------GGREGSLKDIAEELGIPVVGAHSALDDAYITALVFLKLL 200 Query: 181 HT-AAAHL 187 A+L Sbjct: 201 KRFRGANL 208 >UniRef50_Q11G58 DNA polymerase III, epsilon subunit n=1 Tax=Chelativorans sp. BNC1 RepID=Q11G58_MESSB Length = 498 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 61/181 (33%), Gaps = 15/181 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYERG 64 + D ETTGLD TA V+V + + G V + P ++ I+G + Sbjct: 16 VAFDTETTGLDTRTARVVQVAGVAISRGAVRQDESFESLVHPGMSIPPDSIRIHGITDGM 75 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L A W + + G FD I+ R+ + Sbjct: 76 LREA----PAFAAVWRSFEMFRGVRPLIGYAVGFDLAIIEREAARAGIRRKRP------- 124 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L ++ L+A+A LG ++ RH A+ DA A A F L Sbjct: 125 ---RTLCVRTLSRIVNRDLRGHSLEALAAWLGFEIIGRHQALDDAMAAAKVFTGLLPRLQ 181 Query: 185 A 185 A Sbjct: 182 A 182 >UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJV7_ACIFE Length = 223 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 55/187 (29%), Gaps = 18/187 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHIT----VEQLAAADPKAMEI 57 +VVDLETTGLD + +E+G L V G+ + + P + Sbjct: 22 PDTYVVVDLETTGLDPERDQIIEIGALEVTAGKRGRTFSTLLQPRTPLEGQYVSPFITRL 81 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G L Q A +L G N FD + +Q Sbjct: 82 TGITNEMLAAA----PQPRQALEAFGKFLGSRVAVGYNVGFDMGFLQQQFQDQLYRPLAN 137 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 V + + L+ +A V H A+ D T CF Sbjct: 138 DWVDV----------LPMAQTLFPLWDHHRLNNLAAWYHVENKEAHRALSDVETTETCFR 187 Query: 178 MLRHTAA 184 L+ A Sbjct: 188 KLKEDAG 194 >UniRef50_B1VHF1 Putative exonuclease n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VHF1_CORU7 Length = 270 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 5/176 (2%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLETTGL+ T +E+ +L V+ G + H + + ++ ING + Sbjct: 90 RCAVVDLETTGLEPATDRVIEIAVLTVEHGSIV-GSFHCLLNPECSIPGESSNINGLRDD 148 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A E+ + T G N FD +A + + + Sbjct: 149 DVAN----SPTFAEVAQELLPHVLNRTLVGHNVKFDVGFLAAEYARLGHADAARVLTEQC 204 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + AA A + + L +A G+ H A DAA T L Sbjct: 205 LPQALCTAATARELIPREAVGRYTLANLAAHCGLASSPAHRAQQDAATTFDLTHRL 260 >UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycoplasma RepID=B3PN84_MYCA5 Length = 1438 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V DLETTGL +E G ++ G ++ P EI Sbjct: 402 SQTYVVFDLETTGLSPRFNEIIEFGASIIENGIIKESHQFF-IKPTKPIPPSITEITKIT 460 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ D L+ N FD + + Y + Sbjct: 461 DNTVANGYSQ----EEGVRKIYDILKNRICVAHNAKFDINVCKENFLKYGL--------- 507 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDML 179 + ++ + + A + ID + L+ VA++ V H A DA A + ++ Sbjct: 508 -DNSKIIGIDSLAIARFLIDEAKSYRLEIVAKKFNVYYARNEAHRADYDANVLANVWILM 566 Query: 180 R 180 Sbjct: 567 I 567 >UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kordia algicida OT-1 RepID=A9DMS8_9FLAO Length = 457 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 19/185 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++D+ETTG + GE++ V + G Sbjct: 4 NPTYTIIDVETTGRSNKITEIS----IFKFDGETIVDEFTSLVNPNVLIPTHITALTGID 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A EV + + F N FD ++ + + F Sbjct: 60 NAMVADA----PTFAEIAKEVLSITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKK--- 112 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + I + L + + L + + +RH A GDAAAT F +L Sbjct: 113 --------LCTVRLSRALIPGFKSYSLGKLCKSLNIHISDRHRARGDAAATVILFQLLLT 164 Query: 182 TAAAH 186 AA Sbjct: 165 KDAAA 169 >UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-positive type n=16 Tax=Bacteria RepID=C4Z5K4_EUBE2 Length = 1513 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 16/163 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V DLETTG + +E+G + V GE + V + + Sbjct: 470 NDTYVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDR-FSTFVNPEIPIPFRIETLTHIN 528 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + + E ++ G N FD++ + + + Sbjct: 529 DQMVMNA----PKIEEILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTT---- 580 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + D A + + LD + + L V + + H Sbjct: 581 -----IIDTVLLA--QFLMPNLHNYKLDTLTKHLNVVLESHHR 616 >UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Proteobacteria RepID=DPO3E_SALTI Length = 243 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 18/183 (9%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D ETTG++ Y+ +E+G + V H+ ++ DP+A ++G Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVHGI 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + A E D++RG N +FD + + Sbjct: 69 ADEFLLDK----PVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTF 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + A + + LDA+ R + R H A+ DA A + Sbjct: 125 C------KVTDSLALARKMFPG-KRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLA 177 Query: 179 LRH 181 + Sbjct: 178 MTG 180 >UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6 Tax=Rhodobacteraceae RepID=DPO3E_RHOCA Length = 704 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 61/187 (32%), Gaps = 19/187 (10%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 +V D ETTGL V++ + + G + V + ++G Sbjct: 509 TFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGIT 568 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E + T A + G N FD + R+ + F Sbjct: 569 EAMVA----TAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIGKNF------- 617 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDML 179 + L + + E LDA+ RLG +P RH+A+GD ATA F L Sbjct: 618 -DNPVLDTV---LLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRL 673 Query: 180 RHTAAAH 186 A Sbjct: 674 LPALKAR 680 >UniRef50_Q3K0L7 Exonuclease, DNA polymerase III, epsilon subunit family n=8 Tax=Firmicutes RepID=Q3K0L7_STRA1 Length = 604 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 53/182 (29%), Gaps = 21/182 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + I D+ETTGL+ VEVG + + G+ + V IN Sbjct: 51 NRFIAFDIETTGLNSQQDRIVEVGAVLFENGKVVDSYES-LVNAKVNISADVTRINNITN 109 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGN-----TFAGSNPAFDSTIVARQRVTYSMPFSPL 117 R + + E+ ++L N FD + Sbjct: 110 RMIKNA----PSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLG------ 159 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ + L + + N+ + VAE + N H A DA Sbjct: 160 -----YNGEIKYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILT 214 Query: 178 ML 179 L Sbjct: 215 KL 216 >UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-related DNA helicase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHT3_ANOFW Length = 880 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 16/175 (9%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + +VVD+ETTG +++G + ++ + + V+ ++ G Sbjct: 1 MNDRFVVVDIETTGNAPKKEDRIIQIGFVVIEGDK-VKKRFSTFVQPERDIPLFIQQLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 ++ + + G F N FD + + + + Sbjct: 60 IDHAMVHDA----PPFQHIAAMLVEQWEGAYFVAHNVQFDWAFLQEEFIRSGIQPPT--- 112 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 RL D + + L+ +AE L H A DA ATA Sbjct: 113 -----CRLLDT--VELARFLMPTQSSYKLNHLAEALSFAHDRPHQADYDAEATAQ 160 >UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2X3_9BACT Length = 185 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + D+ETTG+ VE+ + VD SL V +A+ ++ + Sbjct: 8 PFTIFDVETTGMSPVRDRIVELAAVRVDRDGSLSR-FQSLVNPGVRIPAQAVAVHHITDD 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A + ++ +T N FD + +P Sbjct: 67 MVAGA----PSFARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLPL--------- 113 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAFCFDMLR 180 + L + K L ++ + N H A D T ++ Sbjct: 114 -WKGKTLDSLRLLKTTFPNLPSYNLQSLRAYFQLETEKGMNAHRAGADVEWTRQVLEIAL 172 Query: 181 HTA 183 A Sbjct: 173 SKA 175 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 16/173 (9%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K+ IVVDLETTG ++ V++G+ L + E+ G Sbjct: 4 KRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYT-TFLNPEKPIPAFIQELTGIS 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + L F N +FD T + R+ + Sbjct: 63 PKDVKNA----PLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISLGK----- 113 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + L ++ + L +++ + H A DA TA Sbjct: 114 -----MKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPHRADSDAEVTAD 161 >UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXK4_MYCAP Length = 1459 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 15/181 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + D+ETTGL +E G ++++ + V ++ A E+ G ++ Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQAKIGAFTTELTGITQQM 484 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E L+ + D L G N FD + Q ++PF +TV Sbjct: 485 LDSEGLS---IKDGLQRIYDCLDGKVAIAHNAKFDFNFLKEQFRLNNVPFPNVTV----- 536 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDMLRHT 182 + A ++ + L+ V RLGV H DA A + + Sbjct: 537 -----IDTLIASRIGFPNYKRHKLEDVTSRLGVVYDPNVAHRGDYDAKVLANVWVNIISE 591 Query: 183 A 183 Sbjct: 592 L 592 >UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alphaproteobacteria RepID=Q0C6A4_HYPNA Length = 232 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 17/192 (8%) Query: 1 MAKQL--IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M +++ I D ETTGL+ + +E+G + + + A + I Sbjct: 1 MTERVREIAFDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINPGMAVSEATIRI 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + L + E ++ N +FD + + P Sbjct: 61 TGITDDHLRDKPPFEHP--DIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPE 118 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFC 175 R D A + P LDA+ +R + + +R H A+ D+ A Sbjct: 119 D-------RWVDTVQMARKR---YPGAPASLDALCKRFDISLESRTFHGALLDSQLLASV 168 Query: 176 FDMLRHTAAAHL 187 + L A Sbjct: 169 YLELLGGRARAF 180 >UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chromobacterium group RepID=B9Z6P2_9NEIS Length = 476 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 25/182 (13%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VDLETTG E+G+L +D + V P + G Sbjct: 4 EQPCAIVDLETTGGHITRDRITEIGILLIDGERIERYET--LVNPGQPIPPFIENMTGIS 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + + L+G N FD + + F Sbjct: 62 DAMVAEA----PPFAALVETLLEKLQGRLLLAHNARFDYGFLKNEFKRAGHVFQSEV--- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA--------ATA 173 L + LD++ R G+ + +RH A+ DA ATA Sbjct: 115 --------LCTVKLSRRLYPQHFKHSLDSLIARHGIVLADRHRAMADALAVYHFIEAATA 166 Query: 174 FC 175 Sbjct: 167 EL 168 >UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019768DE Length = 180 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 16/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V+DLETTG+ + +E G + V + + V + +P ++ G Sbjct: 7 LPDDYVVLDLETTGVSWYRDTIIEFGAVKVVDRKPVDTYQQ-LVNPMRNLNPFITQLTGI 65 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 L + W + G N FD + P Sbjct: 66 TPDMLE----PAPTLDTVLPDFLRWCGDDAMIGHNIMQFDIKFIDLAAQRILHHAVP--- 118 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +R+ D + L + +R + V H A+ DA T CF+ + Sbjct: 119 -----NRIIDT--LQMSRSMYPQYNRHRLVDLIQRFDIADVEEHRALSDAEQTQMCFEYM 171 Query: 180 RHT 182 R Sbjct: 172 RDE 174 >UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinobacter RepID=A3JBF5_9ALTE Length = 483 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 56/187 (29%), Gaps = 17/187 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +DLETTG T E+G+ GE + V P ++ G Sbjct: 10 TTTFAFLDLETTGGSVATDRITEIGIQFWRAGECV-GQWQTLVNPKTRISPFIEQLTGIS 68 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E++ L G F N FD V + F Sbjct: 69 NAMVADA----PLFEDIADELEQRLDGVVFVAHNARFDYGFVKGEFRRLGRMF------- 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LR 180 L + +DA+ ER G+ V RH A+GD AA F+ L Sbjct: 118 ----VAKVLCTVKLSRRLYPEFRRHNMDALIERHGLQQVQRHRAMGDVAAMLGFFEHVLA 173 Query: 181 HTAAAHL 187 L Sbjct: 174 QQGEDTL 180 >UniRef50_A8TQX4 DNA polymerase III, epsilon subunit n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQX4_9PROT Length = 458 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 15/182 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYERG 64 I +D+ETTGLD A V+ G + + G + ++ I+G + Sbjct: 15 IAIDIETTGLDASRAHAVQFGAIPIAKGVLKPDDACEQMLNPGIPIPSSSIAIHGITDAM 74 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + W + + G + FD T++A + + + Sbjct: 75 VRNA----PTLSDVWPNLVGQWKNRVVIGHSIGFDLTVLAAEAKRKKLDWQKP------- 123 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + LDA+A L + NRH A+GDA A F L Sbjct: 124 ---RALCVRMLATIAAPTLASHSLDALATWLNLETRNRHRALGDAEAAGLIFLALIPHLQ 180 Query: 185 AH 186 A Sbjct: 181 AR 182 >UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lovleyi SZ RepID=B3E5V5_GEOLS Length = 168 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 20/183 (10%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++IVVD ETTGL +E+G + V+ G+ + A ++G Sbjct: 2 NRVIVVDTETTGLSVRNQGRVIEIGAVAVENGQIT-AELATLINSGTPISYGAYRVHGIS 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E+ L W ++ + N AFD + + M + Sbjct: 61 EQMLAGR----PTPQEVWPWFLEFAGNSPLVAHNAAFDRAFINHELHLLGMSLAN----- 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVV-NRHSAIGDAAATAFCFDM 178 + + L+ V + L +P RH A+ DA A + Sbjct: 112 ------PWHCTVRLSRRKLPRLMNHKLETVYKHLFGELPEEVQRHRALDDARMAARVWVE 165 Query: 179 LRH 181 L Sbjct: 166 LLK 168 >UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Roseobacter RepID=Q16CY8_ROSDO Length = 228 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 17/183 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG D + VE+G + + + H + + +A +++G + Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPERSMPEEAFQVHGLGDDF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + A D++ N AFD + + ++P P W Sbjct: 64 LRDK----PKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELGWINLPKIP------WE 113 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + L + + LDA+ R G+ +R H A+ D+ A + L Sbjct: 114 QAIDTLDI---ARKRFPGSP-ASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELIGG 169 Query: 183 AAA 185 Sbjct: 170 RQP 172 >UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ64_9FIRM Length = 1442 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V DLETTGL +E G + + G L ++ + + Sbjct: 390 EATYVVFDLETTGLSAKYDYMIEFGAVKIKNGLRLDSKQLF-IKPPISIPAFIEKKTNIS 448 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E+ ++ N +FD + + S Sbjct: 449 NEMVRNAK----SFSEVVDELLAYIGDAVLVAHNASFDFPFLNEELRRLSRKP------- 497 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDML 179 + + + L + + L+ V+ + + H A DA A F+ L Sbjct: 498 LTNPVIDTLDM---ARAILSDRSRFALEYVSNHYKLNYSRSDAHRADYDANILADAFEHL 554 Query: 180 R 180 Sbjct: 555 L 555 >UniRef50_C0WGE7 Possible exonuclease n=2 Tax=Corynebacterium RepID=C0WGE7_9CORY Length = 1118 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 16/179 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +K+ VVD ETTG T +E+G++ +D + V+ ++ Sbjct: 4 SKRYAVVDFETTGFG-STDRVIEIGVVLLDHNREVESTWETLVQPQRDIPNSF--VHRIT 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + GE + L G T N F+ + R+ + + Sbjct: 61 PTDV----VDAPLFGEVAGEFFELLNGRTVVAHNAPFEVRFLQREFSNLGVAWPNYGAWV 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V R + L+ E +G+ HSA+ DA ATA F L Sbjct: 117 VDTKR--------LFQQTYPGEGT-TLEHALEVVGITNARPHSALADALATAELFAQLV 166 >UniRef50_Q04EX4 3'-5' exonuclease domain and Rad3-related DNA helicase n=2 Tax=Oenococcus oeni RepID=Q04EX4_OENOB Length = 489 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 15/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VDLETT + +++G+ V + + V + +++ G Sbjct: 4 NSTFSIVDLETTAPFKEGGHIIQIGISFVKNWKII-NNFQTMVNPGVKIPEQIVDLTGIK 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + D L G F N +D + + M Sbjct: 63 NEDVENA----PYFEDLARMIHDQLSGTVFVAHNVRYDFPYLNGEFARIKMR-------- 110 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 RL + ++ LD + +LG+ + H A DA+ATA F + Sbjct: 111 --RLRLEYVDTVQLAQIVFPTMNSYKLDELVSKLGINLPRHHRADQDASATAQLFLKIHE 168 Query: 182 TAAA 185 Sbjct: 169 HLQE 172 >UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clostridiales RepID=C5EVY5_9FIRM Length = 240 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 49/185 (26%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M I +DLETTGL+ E+ L V G V + ++ G Sbjct: 1 MTNSYIALDLETTGLEPKQEKITEIAALKVVDGVISQRYV-TFVNPGRSLGAYITQLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L +V + G N FD + + V + F Sbjct: 60 TDGMLADA----PPIEELIEDVVKFCGDLPLLGHNIRFDYSFLKHAAVNRRLEFEREG-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + L VP H A DA A + L Sbjct: 114 ---------IDTLTLCRAFMTGETRKNLSCACSYFHVPQSTAHRAQADAEAAHLLYQELM 164 Query: 181 HTAAA 185 Sbjct: 165 SRHGQ 169 >UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Flavobacteriaceae RepID=A0M4R6_GRAFK Length = 507 Score = 136 bits (342), Expect = 4e-31, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + D+ETTG E+ ++ V G+ + V A + G + Sbjct: 5 KFAITDIETTGNGIKGNRITEICVIVVQNGKVID-EYSSLVNPSQAIPLYIETLTGINDE 63 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 ++ Q + E+ + F N FD I+ + + F Sbjct: 64 MVFNA----PQFSEIADEITKITKDCIFVAHNVNFDYNIIRAEFASLDRDFKRK------ 113 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L K I L + + +P ++RH A GD AT F Sbjct: 114 -----RLCTVRLTKKLIPGLFSYSLGNICTSINIPHIDRHRAKGDCDATVTLFQRCISL 167 >UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_LACRG Length = 933 Score = 136 bits (342), Expect = 4e-31, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 49/183 (26%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVDLETTG ++ G V G+ + + + + G Sbjct: 6 TFAVVDLETTGTSVKDGDRMIQFGCALVRHGKII-QTISQMINPDRSVPQTIQRLTGISP 64 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + L F N FD + + +P L Sbjct: 65 ERLVAA----PYFDEVAPALHQVLTKTVFVAHNVNFDYPFLNAEFERIGLPKLQLEA--- 117 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + ++ + L + + N H A DA +TA L+ Sbjct: 118 -------IDTVELAQVLLPEISSFRLSDLTTHFAIQHDNPHQADSDATSTAKLLLQLKAR 170 Query: 183 AAA 185 A Sbjct: 171 FQA 173 >UniRef50_UPI0001B583F7 DNA polymerase III n=2 Tax=Streptomyces RepID=UPI0001B583F7 Length = 612 Score = 136 bits (342), Expect = 4e-31, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 58/186 (31%), Gaps = 16/186 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A +VD+ET+GL + V ++ + V+ P ++++G Sbjct: 17 AHDWALVDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPGCDPGP--VDVHGLT 74 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L G + L+ N FD +A + R Sbjct: 75 RERLSGA----PAFGQIAGRLGAMLQDRVLVAHNAQFDYDFLAHEFARA----------R 120 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++ L A + PT L ++A GVP H A+ D A F Sbjct: 121 LYLPVTRRLCTLALNRQVDPPTRDMKLGSLAAHYGVPRTRAHDALDDTRVLAGIFLRATL 180 Query: 182 TAAAHL 187 AA L Sbjct: 181 REAARL 186 >UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidobacterium longum RepID=B3DQ35_BIFLD Length = 235 Score = 136 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 53/190 (27%), Gaps = 22/190 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +DLETTG ++ E+G + V G + V L + + G + Sbjct: 33 DYVALDLETTGFYPNSCAITEIGAVRVREGHIVD-QFQQLVNPLRPIPRQITTLTGITDA 91 Query: 64 GLYREALTEQQTAVAWGEVQDWLRG-------NTFAGSNPAFDSTIVARQRVTYSMPFSP 116 + WL G N +FD + Sbjct: 92 MVAD----LDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHI------ 141 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 AD + L + R G+ H A+ DA T CF Sbjct: 142 ----AGCGFACADYDTMQISRALFPAQRHHRLADLIVRFGIADNEEHRALSDAIQTQQCF 197 Query: 177 DMLRHTAAAH 186 + +RH H Sbjct: 198 EWMRHYVTEH 207 >UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EC49_MACCJ Length = 850 Score = 136 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 17/178 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 M ++ VVD+ETTG + D+ ++VG+ V + + + I + Sbjct: 1 MNRKYAVVDIETTGNNLDSDEIIQVGIAIVQNKKIIETYDTFIACNN--EIPAFIQSLTK 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + + + L G F N FD + + F P Sbjct: 59 IDAFDL----VDAPNFSHVASHIIKLLDGCVFVAHNVQFDLRFLQKYFSEAGHKFQP--- 111 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + D + K+ E L ++A+ LG+ + + H AI DA ATA F Sbjct: 112 -----RYIIDTVDW--FKIVYPSLERYQLKSIADDLGIELSSAHRAIDDAVATAEVFI 162 >UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum RepID=DPO3E_TREPA Length = 215 Score = 136 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 13/180 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 D ETTGL + +E+G + + + + A P +IN + Sbjct: 15 FTAFDTETTGLKAEEDRIIEIGAVTF-DRKGIIARFSTLIFPDRAIPPDVSKINHITDDM 73 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + +++G N FD + + Sbjct: 74 LVNK----PRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAELSLCKKQPLS-------- 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 H++ D A A L +A + G+ V H A DA F + A Sbjct: 122 HKVVDTYAMAQAVFPGLGRHQYRLQNLALQFGLTVHAAHRAEDDARVCMELFTTMIAHHA 181 >UniRef50_A5IJS5 DNA polymerase III, epsilon subunit n=6 Tax=Thermotogaceae RepID=A5IJS5_THEP1 Length = 186 Score = 136 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 56/184 (30%), Gaps = 18/184 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 VVD ETTG D VE+ + V G+ V +++G Sbjct: 8 FCVVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIRIPALVQKVHGISN 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + +D+++G N FD T + + Sbjct: 68 MDIEEA----PDMDAVYNLFRDYVKGTVLVFHNANFDLTFLDMMAKETG-------NFPI 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + L + L + ERLG+ RH A+ DA TA F L Sbjct: 117 TNPYIDTL-DLSEEIFGRP----HSLKWLCERLGIKTTIRHRALPDALVTARVFVKLVEF 171 Query: 183 AAAH 186 + Sbjct: 172 LGEN 175 >UniRef50_Q3AAH9 Putative DNA polymerase III, epsilon subunit n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AAH9_CARHZ Length = 222 Score = 136 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 56/185 (30%), Gaps = 15/185 (8%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 + V+DLETTGL + +G + + G H V + G Sbjct: 34 LNLTYTVIDLETTGLKPFQGDEIIAIGAVKIINGNITRPAFHAYVNPQREIPEVVQRLTG 93 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + D+ R + G + FD + + + Sbjct: 94 ISPKTVQNA----PPLTNTLTTLLDFARNSVIVGHSVNFDLAFLNKHLSSL--------T 141 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 G+ RL D L+ A++ + + RH+A+GDA A F Sbjct: 142 GKKLTPRLLDTVDLGIY--LFPREPNYSLENFAQKFAISLQGRHTALGDAVICAKVFLNF 199 Query: 180 RHTAA 184 Sbjct: 200 LKILE 204 >UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc RepID=B1MY77_LEUCK Length = 801 Score = 135 bits (341), Expect = 5e-31, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 K +VVDLETTG +++G+ + + V D ++ Sbjct: 4 NKTFVVVDLETTGQSVAKGGRIIQIGMTFIKNRRIID-HFESFVNPAQPIDRNIQQLTHI 62 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + +Q+ L N FD + + P Sbjct: 63 SQKEVKNA----PYFEEIAPVIQNLLTDTVIIAHNVNFDYPYLNDEFARTGFP------- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + ++ + L + L + + N H A DA ATA F L Sbjct: 112 ELTNAAIDTV---QLAQILLPTAPGYRLLDLTTYLNITLNNAHRANADAHATALLFLSLW 168 Query: 181 HTAAA 185 A Sbjct: 169 QRAEQ 173 >UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive type) n=5 Tax=Leuconostocaceae RepID=Q04F80_OENOB Length = 1437 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + D+ETTGL +++ + + G L + + + + G + Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKMKNGVVLD-TFDQFINPGFPLSEQTINLTGITDDL 468 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRVW 123 + + A Q + AG N FD V + +P ++ Sbjct: 469 VKN----SKPEAEVLKMFQQFYARTILAGHNVIKFDYGFVNHALAVHKLP-------KIN 517 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L + LD ++++ V + + H AI D+ AT + A Sbjct: 518 TLVIDTLN---LARWLYPNFGRYTLDFLSKKFSVNLEHHHRAIDDSTATGMLLHIFLKEA 574 Query: 184 AAH 186 + Sbjct: 575 EEN 577 >UniRef50_A1KUV1 DNA polymerase III, epsilon chain n=18 Tax=Neisseria RepID=A1KUV1_NEIMF Length = 253 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 62/185 (33%), Gaps = 13/185 (7%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ I++D ETTGL D VE L + + H+ V +A ++G Sbjct: 10 MIQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHG 69 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + A ++ D+LRG N FD + + +P Sbjct: 70 LTIEVLEGK--NAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLP-----T 122 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + D A A P + LDA+ R V R H A+ D + Sbjct: 123 VEELGCTVTDTLAMAREMF---PGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYL 179 Query: 178 MLRHT 182 + Sbjct: 180 AMTRR 184 >UniRef50_C8SCL6 DNA polymerase III, epsilon subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8SCL6_FERPL Length = 200 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 12/183 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ VVD+ETTGL+ + + ++ +D + L+ + + + +++ +G Sbjct: 3 EEKFAVVDVETTGLNVKKDEIISIAIIPMDGLKILFSEAYYRILKPRRFKIDSVKYHGIT 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + E+ + L G + D + + + F V Sbjct: 63 PRMVEEA----PTFCEVKEEILEKLNERIIVGYSINLDIEFLKKSFKECEVVFECKYVDI 118 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LR 180 +L G+L D + L+ +A++ GV V RHSA+ DA TA F M L Sbjct: 119 ADVEKLV-------GRLFGDYMKDVTLEDLAKKYGVDVAYRHSALSDAYITAQIFQMQLL 171 Query: 181 HTA 183 Sbjct: 172 RLL 174 >UniRef50_C3XME5 DNA polymerase III subunit epsilon n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XME5_9HELI Length = 267 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 19/186 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 + +VD+ET G + P+E+G L V G+ + F + A +I G Sbjct: 69 ETFCIVDIETNGHNPCVHTPIEIGTLKVRNGKVVDCFESFVF---NAEIPEYITKITGIN 125 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L + A + + +L + F N FD +++ + Sbjct: 126 AQMLENA----PKLASVLEKFKLFLGDSIFVAHNVDFDYNFLSQSLEKCGFGY------- 174 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 +++ RL + + + L + E LG+ N H A+ D+ F + Sbjct: 175 LYNPRLCTI---KLAQRVL-QAPRYSLGFLNEFLGINHQNLHRALQDSKTALEIFKICLK 230 Query: 182 TAAAHL 187 +L Sbjct: 231 KIPKNL 236 >UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7J6_HYDS0 Length = 196 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 15/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D+ETTGL+ D +E+ V+ H + + EI G Sbjct: 12 YVVLDIETTGLNPDEHEIIEIFAFLVEKERIT-KQFHRLINPGFFIPRRITEITGITNAM 70 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + + ++++ G N FD + +++ Y Sbjct: 71 L----VGQPKVEGIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNS------- 119 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ K I + L AVA+ + H A DA T F+ L Sbjct: 120 ---PNICTLELSKKLIPNLKSYKLSAVADYFNIKYERLHRAKDDALLTYNIFNKLMDI 174 >UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anaplasmataceae RepID=Q2GJZ1_ANAPZ Length = 244 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 17/190 (8%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + IV+D ETTGLD D +E+G + + V H ++ A ++G Sbjct: 1 MKVREIVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + + A E+ D+L+ + N FD + + S + Sbjct: 61 ITRESL----IGMPKFAEVADELLDFLQDSALVIHNARFDMRFLEVEIERLSNKRAITNT 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + + LDA+ +R + R H A+ DA A + Sbjct: 117 I---------VDTLEMARKKFPGMP-ASLDALCKRFNISTQERKFHGALKDATLLARVYV 166 Query: 178 MLRHTAAAHL 187 L L Sbjct: 167 ELLEALQRRL 176 >UniRef50_C9NHS4 DNA polymerase III, epsilon subunit n=2 Tax=Streptomyces RepID=C9NHS4_9ACTO Length = 346 Score = 135 bits (340), Expect = 7e-31, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 17/173 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL + + +D + + V P + I+G Sbjct: 32 YAVVDVETTGL-ARDDRIISAAVYRLDARGDVEDHWYTLVNPERDPGP--VWIHGLTSDV 88 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E+ + L G N AFD +++AR+ ++ Sbjct: 89 LEGA----PLFPQVAAELSERLAGRVLVAHNAAFDWSMIAREYARAAVTAPVEQ------ 138 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L A K P L+++A GV + H A+ DA A F Sbjct: 139 ----RLCTIALAKELRLPLPNHKLESLAAHFGVVQQHAHHALDDARVLAEAFR 187 >UniRef50_A4U2R7 DNA polymerase III, epsilon subunit n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U2R7_9PROT Length = 459 Score = 135 bits (340), Expect = 7e-31, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 60/184 (32%), Gaps = 15/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 ++V+D ETTGLD V VG + + V +A I+G E Sbjct: 256 PVVVLDTETTGLDAARDAIVSVGAVRCHGSRIYRAAMLDLLVNPGRRIPARATAIHGIDE 315 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + E+ + G FD ++ + ++P Sbjct: 316 SMVAGK----PDLAASLPEIAAIMDKAVVVGHQIGFDLALLRHGTERLGLDWTPP----- 366 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L +D A R+GV + RH+A+GDA TA + L Sbjct: 367 -----PRLDILLLSAALAPDESGHEIDDQAARMGVNISGRHTALGDALVTAELWVRLIPQ 421 Query: 183 AAAH 186 Sbjct: 422 LERA 425 >UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplasma RepID=Q600A7_MYCH2 Length = 1469 Score = 135 bits (340), Expect = 7e-31, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 17/187 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + ++ DLETTGL VE G + + G + ++ P +I G ++ Sbjct: 410 KFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKHQFF-IKPTGKIPPAITKITGISQK 468 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A++ +A ++ ++ + N AFD + + + + Sbjct: 469 MIDETAIS---WEIALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQ-------KAKKSLK 518 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDM-LR 180 + + + + L VA+R + H A DA + L Sbjct: 519 NPIIDT---LEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLA 575 Query: 181 HTAAAHL 187 + ++ Sbjct: 576 ELKSQNI 582 >UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit n=4 Tax=Lactococcus lactis RepID=D2BLE9_LACLK Length = 794 Score = 135 bits (340), Expect = 7e-31, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 16/179 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + VVDLE T +++G++ V+ GE + V P+ E+ G Sbjct: 4 MT-RYAVVDLEATDAHSSENKIIQIGIVLVEDGEIVE-TFSTEVNPHEPLLPRISELTGL 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ L T + + G+V++ L + F N FD ++ + + + F+ Sbjct: 62 SDKQLK----TAPEFSEVAGKVRELLTDSVFVAHNARFDYGLLEKSFLNAGLEFNE---- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + ++ E GL++++E+L + + H+A+ DA ATA + Sbjct: 114 ------MLRVDTVDLARVFYPTFEKYGLESLSEKLDLAHDHPHAAVSDAYATAELLLKI 166 >UniRef50_Q2VYH6 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease n=93 Tax=Bacteria RepID=Q2VYH6_MAGSA Length = 257 Score = 135 bits (340), Expect = 7e-31, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 59/185 (31%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG D VE+G + + V H +A +++G Sbjct: 31 IVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPERDMPEEAFKVHGLSADF 90 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A + +++ N FD + + P + Sbjct: 91 LSDK----PLFAEIVADFLEFIGDVPLVIHNAEFDMRFINAELTRLGFPP-------LPM 139 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R D A + P LDA+ R + +R H A+ D+ A + L Sbjct: 140 SRSIDTVMMARKRF---PGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLIGG 196 Query: 183 AAAHL 187 L Sbjct: 197 RQPGL 201 >UniRef50_A0PN08 DNA polymerase n=1 Tax=Mycobacterium ulcerans Agy99 RepID=A0PN08_MYCUA Length = 500 Score = 135 bits (340), Expect = 7e-31, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 57/182 (31%), Gaps = 15/182 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG + VEVGL+ + + + A E +G Sbjct: 98 FAVLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTLINPHRDV--GATERHGIR--- 152 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 R+ L + LRG F N FD + + +P + + Sbjct: 153 -ARDVLGAPAFEAIIPRLLRDLRGRVFVAHNVNFDQRFLLAELRRAGVP--------LDN 203 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L L + L + GV + + H A+ DA ATA L Sbjct: 204 PWLTGLCTMRWAGRLLPAA-SRKLPDCCDAAGVFLTDAHRALADARATASLLKYLIDHCG 262 Query: 185 AH 186 + Sbjct: 263 SP 264 >UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5I0_9CHLA Length = 231 Score = 135 bits (339), Expect = 9e-31, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 20/179 (11%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYR 67 D ETTG+ D +E+ + + + + P+A I+ + + Sbjct: 6 YDTETTGIKADRDYVIELAVYDPVGNRTFER----LINPGVPIPPEATAIHHITDEMVAN 61 Query: 68 EALTEQQTAVAWGEVQDWL-RGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 E +++ N FD + + + P Sbjct: 62 A----PSFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKF------ 111 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + + L + G+ N H A+ D F + + Sbjct: 112 ----LDTLKWARRYRNDLPRHTLQFLRGIYGIAENNAHRALDDVIVLHQVFSAMLDDLS 166 >UniRef50_Q0EZC1 Probable DNA polymerase III (Epsilon chain) protein (Fragment) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZC1_9PROT Length = 300 Score = 135 bits (339), Expect = 9e-31, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 20/190 (10%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI---TVEQLAAADPKAMEING 59 +LI++D ETTGL + VE+G + V + L H+ + + + I+G Sbjct: 54 RLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPERNIPDEVVRIHG 113 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E D++ G T N FD + + + P Sbjct: 114 IDNAKVKDQ----PTFREIAQEFLDFIEGATLVIHNAPFDLGFIMNELRINNFP------ 163 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + H ++ D +A K P + LDA+ +R + +R H A+ D+ A + Sbjct: 164 -EIGHMQVIDTLVFAREK---HPHQRNNLDALCDRYNIERGHRELHGALLDSELLAEVYL 219 Query: 178 MLRHTAAAHL 187 + L Sbjct: 220 GMTGGRQFSL 229 >UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothiorhodospiraceae RepID=Q0A739_ALHEH Length = 729 Score = 135 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 17/184 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 +V D ETTGL + V + + + G L V ++ +G ++ Sbjct: 536 YVVFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNPGRTIPRSSILFHGIHD 595 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + ++ + N AFD + + + F Sbjct: 596 TTVADK----PRIETVLPRFHTFVGDSVLVAHNAAFDMKFIRLKERRCGVRF-------- 643 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L D T L+A+A RLGV V +H+A GDA TA F L Sbjct: 644 DNPVLDT---LLLSVFLHDHTADHTLEAIAARLGVEVTAQHTAWGDALVTARVFACLLPL 700 Query: 183 AAAH 186 Sbjct: 701 LRER 704 >UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flavobacteria RepID=A5FH18_FLAJ1 Length = 209 Score = 135 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 8/183 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+D ETTG DY+ + +G L + G D +I+G Sbjct: 24 RFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKSTAQIHGI--- 80 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + D+L + + FD T++ + +P Sbjct: 81 -LKDLLVKRPTELEALQQFLDFLGDSIIIAHHTVFDVTMINKALERNGLPQLTNKTLDTA 139 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L + + LD +A++ + +RH+A+GDA TA F + Sbjct: 140 YLYKKTLIQS----HLFERKDHYTLDDLADKFDISKKDRHTALGDAYITAIAFLKIVKKL 195 Query: 184 AAH 186 Sbjct: 196 REK 198 >UniRef50_C3RQT5 DNA polymerase III subunit epsilon n=1 Tax=Mollicutes bacterium D7 RepID=C3RQT5_9MOLU Length = 224 Score = 135 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 21/189 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVE---QLAAADPKAMEIN 58 ++ +V DLETTG + +E+G + V G + F + K E+ Sbjct: 39 QEYVVFDLETTGFNKKEDRIIEIGAIKVKNGRVVDRFSTLCAPIKGGKPMYISAKITEVT 98 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSN-PAFDSTIVARQRVTYSMPFSP 116 G L + + A WL + N FD + ++ F Sbjct: 99 GIKNVDLLNQI----PESEAVKNFMCWLGESKISVAHNGLKFDIPFLKEACKRSNVEFKF 154 Query: 117 LTVGRVWHHRLADLAAYAAG--KLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + D + +N + +A GV H A+ D A Sbjct: 155 T--------HILDTMLLSKALNYVNNGNIPNNKQETLARYFGVD-YQAHRAVNDCEALLK 205 Query: 175 CFDMLRHTA 183 FD L++ A Sbjct: 206 IFDKLKNDA 214 >UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Streptococcus pneumoniae RepID=A5LFK6_STRPN Length = 307 Score = 135 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 60/180 (33%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M+ + +D+ET + +GL+ G + + + D + I+G Sbjct: 1 MSYSYVALDVET--ANDFRGSVCSIGLVKFKDGNIVD-TFYTLINPEEEFDDFNIFIHGI 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + D++ + FD + Y + F + Sbjct: 58 TPEDV----LDSPTFPEVRKSIVDFIGLDIVVAHFAQFDMGALKDVYQKYELDFDNIEY- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +Y K+ + L +A+ L + + + H+A+ DA A+ + L Sbjct: 113 ---------ICSYRLAKVALPGQLNYKLKRLAKNLNIEL-DHHNALSDARASGLILEYLL 162 >UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=Q65S83_MANSM Length = 260 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 19/183 (10%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 I++D ETTG++ Y+ +E+G + + H+ ++ DP+A++++G Sbjct: 11 ILLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPDRLVDPEAIKVHGI 70 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + E D+++G N FD + + + + + Sbjct: 71 TDEMLEDK----PVFTEVAQEFIDFIKGAELLIHNAPFDVGFMDYEFRKHHIDVKTADIC 126 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 V + + LDA+ +RLG+ R H A+ DA + + Sbjct: 127 SV-------TDTLQLARQMYPG-KRNSLDALCDRLGIDNTKRVLHGALLDAEILGDVYLV 178 Query: 179 LRH 181 + Sbjct: 179 MTG 181 >UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolbachia RepID=B3CMS2_WOLPP Length = 234 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTGLD +E+G + + H + + +I+G E Sbjct: 8 IVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKIHGISEEF 67 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + E D++ + N FD + + + G + Sbjct: 68 LEDK----PLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLN-------AGLISS 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R+ D A K P L+A+ +R + + R H A+ DA A + L Sbjct: 117 DRVLDTLPLARKKFVGSPA---SLNALCKRFDISLEGRELHGALVDAQLLAKVYVELTGG 173 Query: 183 AAAHL 187 L Sbjct: 174 LQTFL 178 >UniRef50_C5VCF0 Exonuclease family protein n=2 Tax=Corynebacterium matruchotii RepID=C5VCF0_9CORY Length = 2479 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 16/177 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVD+ETTG VE+ ++ +D + + + A I+G + Sbjct: 2084 TYAVVDVETTGFS-TADRIVELAIVVLDDDGENLYEWSTLINPMRDISNGA--IHGITAK 2140 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +V L G F N FD ++ + + + L G + Sbjct: 2141 DVAVA----PTFDQVADDVAALLEGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHID 2196 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + ++ LD+ +G+ HSA+ DA AT Sbjct: 2197 --------TLRLAQNSLP-ISSRSLDSCLAFMGITNEQAHSALSDARATGRLLTRFL 2244 >UniRef50_Q6MIB4 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIB4_BDEBA Length = 276 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 49/180 (27%), Gaps = 19/180 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + D ET+G VE G + GE + + + + I+G Sbjct: 11 TYVAFDTETSGAYPVGHDVVEFGAVKWYKGEEVGRLQF-LFKPREPMTDFIIGIHGITNE 69 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E+ ++ +G + FD +A +P P Sbjct: 70 MVADA----PLITEKIREIHEFFKGAIVMAHHAPFDLGFMAIDFEKNQLPLLPE------ 119 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC----FDML 179 L + I E L + L + H A DA A F + Sbjct: 120 ----PALCTSLLSRKWIHGVENHKLQTLVRHLNIDGGQAHRAYDDAKACLHVGLACFAKM 175 >UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYA8_9GAMM Length = 595 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 16/183 (8%) Query: 2 AKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A + +++D ETTG + + +EVG++ + H+ + + + ++G Sbjct: 364 ANRQLILDTETTGFEAQNGDRIIEVGIVEMINRRFTGEKLHVYINPKIEMGEEVIRVHGI 423 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + D+L+G N FD + + + +P Sbjct: 424 HNAFLNDM----PVFEQVGEAIYDFLQGAELIAHNAGFDMSFLQAEFARLGLP------- 472 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + + A K LDA+ +RL V +R H A+ DA A + Sbjct: 473 -DINQTVTVTDSLAIAKRMFAGQRN-TLDALVKRLNVGKQDRTFHGALLDAEILAEVYLA 530 Query: 179 LRH 181 + Sbjct: 531 MTG 533 >UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K928_THASP Length = 502 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 55/178 (30%), Gaps = 17/178 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 L VD+ETTG E+G++ VD V + + G + Sbjct: 12 LAFVDIETTGGPAQRESITEIGIVQVDEDGV--REWSTLVRPASRIPETIQRLTGIDDDM 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + EV D L G F N FD + + P Sbjct: 70 VADA----PRFEDIADEVFDRLDGRLFVAHNARFDHGHLRAAFRRAGLDMRPQV------ 119 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + GLD + ER G+ V +RH A+GDA + + Sbjct: 120 -----LCTVKLSRRLFPDHRRHGLDHLIERHGLAVADRHRALGDARLLWQFWQKIHER 172 >UniRef50_C1QET6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QET6_9SPIR Length = 252 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 60/177 (33%), Gaps = 14/177 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTGL +E+G + + + + T+ ++ + Sbjct: 61 YTIIDVETTGLKPREDKIIEIGAIKYRDNKEIDY--FSTLVKVDYIPNFISSYTNITNKM 118 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A + D++ + G N FD + + + + Sbjct: 119 VKNA----PRVDEAIKQFYDFVGDDILVGYNVPFDIKFLYDAL------YEVSNGELLLN 168 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D+ A K + E VA + + N H A+GD + ++ L+ Sbjct: 169 NDFIDVMYIA--KRVLKDLENYKQVTVASYYNISIDNLHRAMGDCKLCSAIYECLQK 223 >UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Deltaproteobacteria RepID=C7LWI5_DESBD Length = 244 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 6/184 (3%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 V+D E TGL V +G + V + + V + I+ Sbjct: 46 YTVLDTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRPSIPLPKTSTLIHRITPE 105 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMPFSPLTVGRV 122 + + A E+ ++ +G G + D + + R + P + + + Sbjct: 106 AIAQA----PPLAEVLPELIEFCKGTLIVGHHVGLDMSFLNRACRKNHGQPLANPCLDTM 161 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + + L +A +P H A+GDA TA+ F L Sbjct: 162 RMAMLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQTAYLFIYLAKK 221 Query: 183 AAAH 186 A + Sbjct: 222 IAGN 225 >UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ART4_RUBXD Length = 560 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 46/163 (28%), Gaps = 18/163 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V DLETTG E+G L + G + V +P + G Sbjct: 30 EAPYVVFDLETTGSSAREGGITELGALKLVRGRVVDR-FSTLVNPGRPIEPFVARLTGIT 88 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++ G+ N FD + +A R +P L Sbjct: 89 DEMVSGA----PPAREVIPRFEEFAEGSVLVAHNAGFDCSFLAAARGGRGLPNPVLDT-- 142 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 +L + L A+ GV H Sbjct: 143 -----------LRLARLLVPGLRRYRLSALVSHFGVRQAPNHR 174 >UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=11 Tax=Bacilli RepID=DING_STAEQ Length = 902 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG D +++G+ V + + H + P + E Sbjct: 5 TFAVVDLETTGNQLDYDEIIQIGITFVRQNQVID-TYHSMIRTDLEIPPFIQALTSIEEE 63 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ ++ F N +FD + + ++ F P V Sbjct: 64 ML----VQAPYFNEVADDIYQLIKDCVFVAHNISFDLNFIKKAFEKCNIQFKPKRV---- 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + K+ + L A+AE +P+ N H A DA TA Sbjct: 116 ------MDTLELFKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATTTAKLMIKAFEKF 169 Query: 184 AA 185 Sbjct: 170 EQ 171 >UniRef50_C8P2F2 Gram-positive family DNA polymerase III, alpha chain n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P2F2_ERYRH Length = 200 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 15/180 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V+DLETTG E+ + + + V+ + P +E+ G E Sbjct: 13 PNFTVIDLETTGRSNKFEDITELSAIKYRNYKQVD-AFSTLVKPDNSILPFVVELTGITE 71 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + D++ + G N FD Y + + Sbjct: 72 EMVSDA----PKIDQVIKQFVDFIGTDVILGHNVMFD----------YGLVYDAYLATVG 117 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + +L ++ L+ + V + H D TA + ++ Sbjct: 118 LRMHNDYVDTLRVSRLLNKDSKNHKLETLCAYFDVERLVGHRGSEDCLQTAEVYIKMKDK 177 >UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rickettsia RepID=DPO3E_RICBR Length = 229 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 14/185 (7%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D ETTGLD VE+G + + H + +A I+G Sbjct: 7 IILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPFEAYRIHGISGEF 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + +++ + N FD + + + + Sbjct: 67 LKDK----PLFHTIADDFLEFIADSKLVIHNAPFDVKFLNHELSLL----KRAEIKLLEL 118 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 D A P LDA+ +R V R H A+ DAA A + L Sbjct: 119 EHAIDTLVMARSMF---PGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTGG 175 Query: 183 AAAHL 187 + Sbjct: 176 RQSAF 180 >UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6P2_9FIRM Length = 228 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 13/186 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITVEQLAAADPKAMEING 59 K+++ D ETTGLD + +E+ V G L + + K +E+ Sbjct: 3 QFKKIVFFDTETTGLDPEKDQIIELAAALVTENGIELKIDAFCKLPEGEKIPEKIVELTH 62 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + + ++ + + N FD + M + Sbjct: 63 ITDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPKAPKL 122 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFD 177 R D + L E G+ V N H AI D A Sbjct: 123 ------RALDSLTVYKDRAAYP----HKLANAIEHYGLADKVQNSHRAIDDVLALYEVTK 172 Query: 178 MLRHTA 183 + Sbjct: 173 AMSEER 178 >UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XHM4_9FLAO Length = 221 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 7/177 (3%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V D ETTG + + +G L + + + + +A+ I+G Sbjct: 33 EARFVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQEVFNEEAVAIHGIL 92 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++E A +++ G + FD I+ P Sbjct: 93 RENRKYKKVSE---EEAVKAFLEFIGDAILVGHHVGFDIGIINYALKRLGAPKLKNKFTD 149 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + DP ++ LD + E L + +RH A+GDA TA F Sbjct: 150 TGVLYKRTVHLV----NITDPNKVYTLDDLCEELNIAKTDRHKAMGDAYITALAFLK 202 >UniRef50_C4XFQ7 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFQ7_MYCFE Length = 1467 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 15/186 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ + D+ETTGL A+ +E G L + + ++ P + G Sbjct: 430 QEYVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEPIKPFTENLTGITN 489 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + L + A ++ + L G N FD + + + F +TV Sbjct: 490 AMIEKSGL---ELKEALQKIYNDLNGKIALAHNARFDFNFLKEKFRQAKIEFPNVTV--- 543 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLR 180 + ++ + L+ VA R+GV H DA A + L Sbjct: 544 -------IDTLIVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALM 596 Query: 181 HTAAAH 186 Sbjct: 597 DELGKK 602 >UniRef50_C7RR73 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RR73_9PROT Length = 484 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 18/176 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + L+ VDLET+G ++ + +EVGL+ VD + V A P + G + Sbjct: 10 EPLVFVDLETSGANFASDRVIEVGLVEVDADGV--REWSVLVNPEAPISPFITRLTGIDD 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + D LRG N FD + + + F Sbjct: 68 AMV----GSAPTFRQLAPTLLDRLRGRLLVAHNARFDYGFLQCEFKRLGVEF-------- 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFD 177 R L + LDA+ R G+ V RH A+ DA + Sbjct: 116 ---RTPTLCTVKLSRKLFPEHHRHNLDALVTRHGLKVAGNRHRALADARILWELWQ 168 >UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2 Tax=Desulfitobacterium hafniense RepID=B8FZZ1_DESHD Length = 929 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 54/180 (30%), Gaps = 20/180 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++V+D+ETTG D +E L ++ GE + + + + + G Sbjct: 5 KIVVIDIETTGFDIYNDEIIEFAALCIEEGEEAE-AFSVLISPRRQVPERILRLTGISPE 63 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ D + G N FD + + Sbjct: 64 ELKQAG----SLQAYRDKILDLFQDAIIVGHNVEFDLGFLEQAL-----------TIHFE 108 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDMLRHT 182 + ++ L + + LG+ P+ H A+ DA A Sbjct: 109 NTLWDT---LEIARILYPNMPKYKLGDLTKSLGLTPLEKAHRALFDARAAWELLQACWEK 165 >UniRef50_A4X9Y0 DNA polymerase III, epsilon subunit n=6 Tax=Actinomycetales RepID=A4X9Y0_SALTO Length = 607 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 56/186 (30%), Gaps = 14/186 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A +VVDLETTG D E+G + V GE L + V P + G Sbjct: 51 ATTFVVVDLETTGGTPDGGGITEIGAVKVRGGEQLGVLA-TLVNPGTPVPPFVTVLTGIT 109 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L L ++L N +D + + + Sbjct: 110 QSML----LPAPPITEVLPSFLEFLPPDAVLVAHNAPYDVGFLKAACAAHGYRWPS---- 161 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+ D AA A L D L +A H A+ DA AT L Sbjct: 162 ----PRVLDTAALARRVLTRDEVPNRRLGTLAAYFRTATRPTHRALDDALATVDVLHGLI 217 Query: 181 HTAAAH 186 H Sbjct: 218 SRLGGH 223 >UniRef50_C0XS38 DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XS38_9CORY Length = 472 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 + D+ET + ++GL+ V G + V + DP + I+G Sbjct: 121 DFVGFDVET--ANPAWGSICQIGLVRVIDGREVERVTWLCTPPPGLDEFDPSNVAIHGIS 178 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A E+ +++ N FD+T + + Sbjct: 179 AETVEG----SPPAAQRIDELVEFVGELPVVAHNAQFDATALREACRAVGRDIPNIMFA- 233 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 A + + L +AE GV + H A DAAA A L Sbjct: 234 ---------CTLAQSRAAKLKVQNHRLPTLAEHFGVQLEKHHDAGEDAAACAGILVGLAR 284 Query: 182 TAA 184 A Sbjct: 285 DAG 287 >UniRef50_B6FWT9 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FWT9_9CLOT Length = 276 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 19/188 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV DLETTGL+ E+ + D E + + H V K ++ G Sbjct: 96 YIVFDLETTGLEAHKEAITEIAAIKFDYDEPVEY-FHTYVNPKKKIREKITDLTGITNEM 154 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + ++ T N +FD + + + Sbjct: 155 VA----SAPPIEYVLPNFLKFIDKYTLISHNVSFDMSFILDPMYNLGYKKPG-------N 203 Query: 125 HRLADLAAYAAGKLNIDPTE---LEGLDAVAERLGVPVV----NRHSAIGDAAATAFCFD 177 + LA + D + L+ + +LG+P+ H+A+ D F + Sbjct: 204 KAIDTLALARRFMKDEDTGKRLSSYKLEDLKYQLGLPLDVYDIKSHNALYDTKVAYFLYK 263 Query: 178 MLRHTAAA 185 R Sbjct: 264 NCRELKEE 271 >UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA Length = 970 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 15/181 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVDLETT ++ +++ + V + + + + +++ G Sbjct: 34 YAVVDLETTRTTSESGRIIQIAIAFVQNKKII-NQFSTLINPHESIPRNVVQLTGINAEM 92 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + L G F N FD + + M Sbjct: 93 VAGA----PSFEEVAESIHTMLTGTIFVAHNVNFDLPFLNAEFQRIGMNTLN-------- 140 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + ++ L + L + H A DA ATA + + Sbjct: 141 --LVAIDTVTLSQIVWPTAPGFRLVDLTSYLALVHGRPHQADSDALATAELLIQIFNRLE 198 Query: 185 A 185 + Sbjct: 199 S 199 >UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma RepID=DPO3_UREPA Length = 1442 Score = 133 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 64/185 (34%), Gaps = 18/185 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ D+ETTGL + +E G + + + + ++ + + + Sbjct: 406 NATYVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFIKPIQQINENVTNLTNIS 465 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 + + A ++++ + N FD + ++ + + + Sbjct: 466 QEMVNNAI----DEKTALLKIKEIFDDHILVAHNGINFDINFINQRLLKWGLEP------ 515 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATAFCFDM 178 + + + L I+P + L A+ ++ V + H A DA A F + Sbjct: 516 -LKNPSIDTLMIS----RAINPFKSHRLGAICKKYEVDYNDESAHRADYDAIVLADVFKV 570 Query: 179 LRHTA 183 +++ Sbjct: 571 MKNNL 575 >UniRef50_D1WX09 DNA polymerase III, epsilon subunit n=17 Tax=Streptomyces RepID=D1WX09_9ACTO Length = 341 Score = 133 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 54/173 (31%), Gaps = 17/173 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL + + +D ++ + V P + I+G Sbjct: 19 YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPERDPGP--VWIHGLTSDV 75 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E+ L N AFD +++AR+ V Sbjct: 76 LEGA----PLFPEVAEELSARLADRVLVAHNAAFDWSMIAREYARA----------SVVA 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L A K P L ++A GV H A+ DA A F Sbjct: 122 PVEQRLCTIALAKELRLPLPNHKLASLAAHFGVVQQRAHHALDDARVLAEAFR 174 >UniRef50_C5EZ00 DNA polymerase III subunit epsilon n=2 Tax=Helicobacter RepID=C5EZ00_9HELI Length = 247 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 19/177 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGY 60 ++ +VD+ET G + P+E+G + G F + E +I Sbjct: 68 EQKFCIVDIETNGHNPFLHQPIEIGAILYQNGMVQKEFQSFVFCE---EIPEYITKITNI 124 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + +L F N FD ++ Y + Sbjct: 125 TTEMLRNA----PPIHQVLESFRIFLGDCVFVAHNVGFDYGFLSNSLHHYGFGY------ 174 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 +++ L + + L+ + L + H A+ DA F Sbjct: 175 -LYNPSLCTI---KLAQKTF-QAPRYSLEFLNGFLNINHSPLHRALEDAKVALEVFK 226 >UniRef50_Q3SKJ9 DNA polymerase III, epsilon subunit n=4 Tax=Proteobacteria RepID=Q3SKJ9_THIDA Length = 470 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 18/185 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++L VDLETTG + E + V V A ++ G Sbjct: 7 PQRLAFVDLETTGANAARDRVTE--IGVVVVDGDRVETWSTLVNPERAIPQFIQQLTGIS 64 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A E+ + L G F N FD + + F Sbjct: 65 NEMVADA----PTFARVADELAERLDGRLFIAHNARFDYGFLKHEYQRLGRRF------- 113 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLR 180 R L + LD++ R G+ RH A+ DA + L+ Sbjct: 114 ----RADVLCTVRLSRRLFPEHYRHNLDSLIARHGLATEGDRHRALADADLIWQFWRTLQ 169 Query: 181 HTAAA 185 A Sbjct: 170 REHEA 174 >UniRef50_A3V111 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V111_9RHOB Length = 469 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +V D ETTG + V++G L V G+ + V A + ++ + Sbjct: 275 TYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLVNPGRAIPASSTAVHRITD 334 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + + R N FD + R M F Sbjct: 335 AMVKDA----PDMVHAGRKFHSFARDAVLVAHNAPFDLSFFHRYAPKIGMKF-------- 382 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV--VNRHSAIGDAAATAFCFDMLR 180 H L + + TE LD +A+RLG+ + +RH+AIGDA AT F + Sbjct: 383 DHPVLDTV---LLSAVLFGITEGHTLDELAKRLGIELLDKHRHTAIGDAIATRDIFLRMI 439 Query: 181 HTAAAH 186 A Sbjct: 440 PMLEAR 445 >UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacteria RepID=A1K1I0_AZOSB Length = 231 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 18/183 (9%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 V+D ETTG+ + A P E+ ++ V G + + + + G Sbjct: 29 DTYAVIDFETTGMAPEHGARPTEIAVVLVRNGCVIDRYQSLM-NAGVHVPYEIQALTGIT 87 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A + D++ + N AFD + Sbjct: 88 NAMVRAA----PPLAQVMAQAADFVGSHALVAHNAAFDRKFWDAELDRLGR--------- 134 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 + + + + L + LG+P R H A+ DA ATA F + Sbjct: 135 --RREADFVCSLLLSRRVFPDSPNHKLGTLVRTLGLPASGRFHRALADAEATAQLFARIA 192 Query: 181 HTA 183 HT Sbjct: 193 HTL 195 >UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4L7K7_STAHJ Length = 219 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 18/182 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M I +D ET + VG++ V E + + V +E++G Sbjct: 37 MGNAFIALDFET--ANGKRTSICSVGMVKVVNNEIVE-SFYTLVNPFDYFSQTNIEVHGI 93 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + ++ N AFD ++ + ++ Sbjct: 94 TPEDV----IDAPSFEYVFPYMMQFIDKLPVVAHNAAFDMNVLHQSLKQLNIETPS---- 145 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +Y K ID GL + + + H A+ DA A A L Sbjct: 146 ------MIYFCSYQLAKRTIDAY-RYGLKHLMKHYKLDFHGHHDALNDAKACAMITFRLL 198 Query: 181 HT 182 Sbjct: 199 KH 200 >UniRef50_UPI0001AEDE41 DNA polymerase III n=2 Tax=Streptomyces RepID=UPI0001AEDE41 Length = 641 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 54/181 (29%), Gaps = 16/181 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VD+ET+GL + V ++ + ++ P +E++G Sbjct: 19 DWALVDVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTLLDPGCDPGP--VEVHGLTAE 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L G + L+ N FD +A + R+W Sbjct: 77 RLRGA----PTFDQVAGRIGAMLQDRVLVAHNAQFDYDFLAHEFARA----------RMW 122 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L A + PT+ L +A VP H A+ D A A Sbjct: 123 LPVSQRLCTLALNRQVDPPTDDMKLGTLATHYDVPQQRAHDALDDTRVLAGILRASLREA 182 Query: 184 A 184 A Sbjct: 183 A 183 >UniRef50_B9L0P4 DNA polymerase III epsilon subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0P4_THERP Length = 228 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 51/183 (27%), Gaps = 5/183 (2%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAA-DPKAMEINGYYER 63 V+D E TGLD + + +G + + L + + +++ ++G Sbjct: 33 YTVLDAEMTGLDPERDELLALGAVRMVGTRLLLGASFYQLIRPQRQGWGQSVTVHGIRPV 92 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + E + + G D + R + + Sbjct: 93 DV----VGAPPLEQVLPEFVRFCASSILVGHGVEIDRKFLQRAAARCGLSWPRTYWVDTG 148 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + + A L+ + + RH A+ DA TA + Sbjct: 149 RVARWLTSHHGALPEAAADRGRFSLEDLLAAYEIEPPARHHALADAFVTALVWQRQLTEL 208 Query: 184 AAH 186 A Sbjct: 209 ATE 211 >UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria RepID=B0VKV7_ACIBS Length = 459 Score = 132 bits (333), Expect = 6e-30, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 17/184 (9%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 + +++D ETTG + D +EVG + + + HI + +++++G Sbjct: 229 QGPRQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD-SVQVHG 287 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + + A + ++L+G N FD + + +P Sbjct: 288 ITDEFLVDK----PKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSEVC 343 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 A K + LDA+ R +P +R H A+ DA + + Sbjct: 344 EV--------TDTLALAKNKHPGQKN-SLDALVRRYEIPARDRTFHGALLDAEILSDVYL 394 Query: 178 MLRH 181 + Sbjct: 395 AMTG 398 >UniRef50_A4CKG8 DNA polymerase III, epsilon subunit n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKG8_9FLAO Length = 222 Score = 132 bits (332), Expect = 6e-30, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 14/186 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D ETTG + +G L V G + D ++ I+G Sbjct: 33 DFVVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFVKQERFDRASVPIHGI--- 89 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPLTVG 120 L + A E+ D+ + G + +FD ++ + + G Sbjct: 90 -LRTGSSERVTEREALAELLDFTGQSPVVGHHISFDQAMIQAACQRSGLGPLRNPLIDTG 148 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ H L + LD +A++ + +RH+A+GDA TA F + Sbjct: 149 LLYGHTLIKSPLLIK-------KDHYTLDELADKFDISCKDRHTALGDAYITAIAFLNIL 201 Query: 181 HTAAAH 186 A Sbjct: 202 ELLRAK 207 >UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lactobacillus salivarius RepID=Q1WU39_LACS1 Length = 929 Score = 132 bits (332), Expect = 6e-30, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 59/184 (32%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + VVDLETTG D ++ V + + + + + ++ G Sbjct: 4 ERIYAVVDLETTGPKQDGSDKIIQFSCDFVQSNKIV-NHFSTLINPGMPIPVEVKKLTGI 62 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + G + L+ TF N FD + ++ + P Sbjct: 63 KDKDVRYA----PYFDEVAGTIYAMLQNTTFVAHNVNFDYSFLSSELERAGYP------- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + ++ L +++ L + ++ H A D ATA L+ Sbjct: 112 ELELPMMDTV---QLTQIIYPTLVSYRLIDISKYLQLSHIHPHKADSDTKATAELLINLK 168 Query: 181 HTAA 184 Sbjct: 169 KRIE 172 >UniRef50_B9XHY8 DNA-directed DNA polymerase n=1 Tax=bacterium Ellin514 RepID=B9XHY8_9BACT Length = 199 Score = 131 bits (331), Expect = 8e-30, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 17/190 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEING 59 M + ++ DLETTGL +++ + + G V + G Sbjct: 1 MHQDYVIFDLETTGLSSYQDEIIQIAAVRMSNGVVCSSDSFFSYVNPGRSISSFITSYTG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLT 118 + + + + + T N FD + ++P Sbjct: 61 ITNQDVGDA----PRVGTVLKDFSRYAGKATLIAHNGHRFDMKFLHAGCSRNALP----- 111 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCF 176 V +H L+ GK GLD+V RL + RH A GD A Sbjct: 112 TRAVNYHDSIYLSRLVWGKCP----GGHGLDSVLNRLQISNHGVRRHDARGDVELLAEAV 167 Query: 177 DMLRHTAAAH 186 + + H Sbjct: 168 EKMWHLLRER 177 >UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) n=2 Tax=Rhodocyclaceae RepID=Q5P3L6_AZOSE Length = 469 Score = 131 bits (331), Expect = 8e-30, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 57/180 (31%), Gaps = 17/180 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L+++D+ETTG + + E+ +L ++ GE + V + G Sbjct: 3 LPDSLVLIDVETTGANPVSDRVTEIAVLRIERGEIVGR-WESLVNPERPIPALIQRLVGI 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A V+ L G F N FD + + F Sbjct: 62 TDEMVAGA----PTFAELADSVRGHLDGAVFVAHNARFDYGFIRNEFSRLGQQFEASV-- 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + GLDA+ ER G RH A+GD F L Sbjct: 116 ---------LCTVKLSRALYPEHHRHGLDALIERHGFTCGARHRAMGDTDVLWQ-FARLV 165 >UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RD59_9FIRM Length = 1447 Score = 131 bits (331), Expect = 8e-30, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 18/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V DLETTGL +E G V + + ++ +E+ G E Sbjct: 398 TYCVFDLETTGLSSRFDHIIEFGGQIVKDRTCI-KSLQLFIKPPVPIPAHIVELTGISEE 456 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A ++ D++ + N FD + + V + Sbjct: 457 HVRNAK----SFAECADQILDFIGDSILVAHNADFDYNFLNSELVRIGRKP-------LD 505 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDMLRH 181 + + L ++ + L +A G+ H A DA A + + + Sbjct: 506 NPVIDTLDL----ARSMQDRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLANTYMNMLN 561 Query: 182 TA 183 Sbjct: 562 DL 563 >UniRef50_C0QPN1 DNA polymerase III subunit epsilon n=1 Tax=Persephonella marina EX-H1 RepID=C0QPN1_PERMH Length = 206 Score = 131 bits (331), Expect = 9e-30, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 14/183 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 DLETTGLD + + +G + + + + + + + I+ Sbjct: 34 TFCSFDLETTGLDVEKDEIISIGAVKIKEMKIDLSTSFYRIVKPERIPEKENILIHSIT- 92 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMP--FSPLTV 119 E + + ++++G G +FD +++++ Y P + V Sbjct: 93 ---ASEMKKGEDIRDVLPKFLEYIKGTVLIGYFVSFDISMLSKYTQKFYGFPILNPYIDV 149 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +++ + + + + LD +AE L +PV RH+A+ D+ TA F L Sbjct: 150 SQLY------IKKKVKSYTPYEKIKEKSLDQIAEELNIPVRKRHNALYDSITTALIFLSL 203 Query: 180 RHT 182 Sbjct: 204 MKR 206 >UniRef50_B4AHF2 DNA polymerase III PolC-type (PolIII) n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AHF2_BACPU Length = 240 Score = 131 bits (331), Expect = 9e-30, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 28/184 (15%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTG-------ESLYFVPHITVEQLAAADPKA 54 + +V+DLETTGLD+ +E+G + + G E F + +E+ Sbjct: 3 PQTYVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHTMVALEEGRDLPEFI 62 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 + G E L + A E+Q+++ N FD + ++R Sbjct: 63 TNLTGITEEDLEDA----PEEWDALDELQNFIGDAIVVAQNAPFDLSFISR--------- 109 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 G + R A + L V +R+G+ + H A+ D AT Sbjct: 110 -----GDIEPERFYCTR--AMARFVEPEL-SASLKDVTKRIGISLDGHHRALNDVEATIE 161 Query: 175 CFDM 178 F Sbjct: 162 VFRR 165 >UniRef50_Q315G7 DNA polymerase III, epsilon subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q315G7_DESDG Length = 239 Score = 131 bits (331), Expect = 9e-30, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 6/184 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 + V D+E TGLD + V +G + + + H V + A I+ Sbjct: 40 EFAVTDMEMTGLDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQRSMARPATLIHRITP 99 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTVGR 121 L A DW G + D + R + + V Sbjct: 100 AQLQH----SPALAGLLPGFVDWCGQALITGHHVGLDMGFLTRACRRHLGGAPATPCVDT 155 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + PT L ++ R G+P H A+ DA TA+ F L Sbjct: 156 MRLAQAWERERWERSFDPFQPTVSYTLADLSARYGLPQFRAHDALEDALQTAYLFLYLVR 215 Query: 182 TAAA 185 Sbjct: 216 KLKG 219 >UniRef50_B1I645 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I645_DESAP Length = 247 Score = 131 bits (331), Expect = 9e-30, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 57/173 (32%), Gaps = 16/173 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHIT-VEQLAAADPKAMEINGYY 61 + +V+D ETTG + + +G + V G V + P + G Sbjct: 54 RFVVLDTETTGFEPAGGDEVIALGAVVVKNGRPRPEQVFHRLVNPGRSIPPLVTALTGIS 113 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E ++L + AG + FD + + + Sbjct: 114 DEAVAGE----DDLVAVLPCFLEFLGNDCLAGHHLGFDLEFLN-------LRLREFSGAA 162 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + L + + LDA+ G+ RH+A+GDA TA Sbjct: 163 IRNPALDTAVI---ARALYPALKYFSLDAMLSFHGIEPAGRHTALGDAWLTAR 212 >UniRef50_D1NTJ1 DNA polymerase III PolC-type n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NTJ1_9BIFI Length = 214 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 20/200 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M I +D+ETTGL E+G + V G + + + + G Sbjct: 14 MPLDYISLDIETTGLAPRQETITEIGAVRVRDGRIADRFS-MLINPGKHIPSRITALTGI 72 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A DW+ G+ G N FD + + ++ + + Sbjct: 73 SDAMVEDA----PMIDEAIPAFVDWVDGDRLIGHNIRFDLSFLLKEAMLLDAALATPFNA 128 Query: 121 RVWHHRLADL--------------AAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAI 166 + + + +E L + R GV H A+ Sbjct: 129 KAVNPAAMTTTAEITRAMLGPDPLDTMMIDRWLFP-SERHRLSDLIVRYGVADTEAHRAL 187 Query: 167 GDAAATAFCFDMLRHTAAAH 186 DA T CF+ R AA Sbjct: 188 SDATQTYQCFEWQRRYVAAS 207 >UniRef50_A8ET44 DNA polymerase III n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ET44_ARCB4 Length = 272 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 18/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + VD+ET G +E+G + GE L ++ P E+ Sbjct: 80 EQTFCFVDIETNGGTPKKGFQIIELGAVKYKNGEVLD--SFNSLVFAKEIPPYIQEVTKI 137 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L T + + +++L + F + FD ++ YS+ G Sbjct: 138 TPAMLE----TAPRIEKVLKDFKEFLGDDVFIAHDIKFDYNFISDSFEKYSL-------G 186 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ + +L + + E GL ++ E L + + N H A DA T F+ Sbjct: 187 KLLNRKLCTIDLAKRTIKS----EKYGLSSLKELLNIDIENHHRAYYDALTTQIVFEKCL 242 Query: 181 H 181 Sbjct: 243 K 243 >UniRef50_Q15SW9 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15SW9_PSEA6 Length = 251 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 8/179 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 L+ +D ETTGL+ T V +GL+ + H ++ K++ I+G Sbjct: 59 PLVALDFETTGLNPKTDSIVSIGLVAMTVKRIRCQEAQHWIIKPDTELKTKSVVIHGITH 118 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 + E+ L+G + + + Y + F + Sbjct: 119 SDVADA----PSFNRVLDELLQHLQGKVVVAHHKDIEVRFLNSALKHYIGEEIVFPCIDT 174 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + L T L R +P +H+A+ DA A A Sbjct: 175 MALEARFSRTIKRTFLRSLLGQKTPSIRLTDCRSRYRLPYYRQHNALTDALACAELLQA 233 >UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromonadales RepID=A1ARI3_PELPD Length = 170 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 22/186 (11%) Query: 1 MAKQLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEIN 58 M L VVD+ET+GL +EV + + G+ + + V + P A ++ Sbjct: 1 MESGLAVVDVETSGLSPRGGGRVIEVAAVLLREGKVVGELESLLRVNC--SIHPAAARVH 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G L + W ++ N FD + + +P + + Sbjct: 59 GIGWEMLRHA----PEPEDVWRRFLSFVGRRPLVAHNAPFDMGFIRHELALLGLPLANRS 114 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVVNR-HSAIGDAAATAFC 175 + + L+A+A L +P R H A+GDA A Sbjct: 115 -----------ICTLRMARRRFPELASHRLEALARHLLGSIPEDCRLHRALGDARLAARV 163 Query: 176 FDMLRH 181 + + Sbjct: 164 WLAMNE 169 >UniRef50_Q67M39 DNA polymerase III-like protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67M39_SYMTH Length = 390 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 15/188 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M L+V+D ETTGL+YD +++G++ + + AM++N Sbjct: 20 MRYNLVVIDTETTGLEYDQHRIIQIGVVAIKEQRIVKTWESKLRLIDGEVSAYAMQVNRL 79 Query: 61 YERGLYREALTEQQTAVAWGEVQD-WLRGNTFAG-SNPAFDSTIVARQRVTYSMPFSPLT 118 + E ++Q+ +LR G N +FD + + + +P Sbjct: 80 DPSDMRSEKYPHP--KAVLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFARHGLPQWQGN 137 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + A G+ + L+++A V + H A+ DA ATA Sbjct: 138 F----------VDSMALGRALLPDL-SASLESLARHFRVELTQHHDALADAVATAHVLLH 186 Query: 179 LRHTAAAH 186 L A Sbjct: 187 LLDLAQQR 194 >UniRef50_C8NPX3 DNA polymerase III epsilon subunit n=5 Tax=Corynebacterium RepID=C8NPX3_COREF Length = 494 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHIT--VEQLAAADPKAMEINGYY 61 + D+ET + D ++GL+ + G + E L +P + I+G Sbjct: 125 DFVAFDVET--ANDDWGSICQIGLVRYENGVEVDSTSWFCTPPEPLNFFEPANIAIHGIT 182 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E A ++ D++ N FD T ++R + G Sbjct: 183 AEQVAGE----PAFAEVLPKMVDFVGDLPLVAHNAQFDFTAISRACAAAGIEAPVFNFG- 237 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + A + + L VA+ LGV + H A DA A A L Sbjct: 238 ---------CSLALSRSSRLKFHNHRLPTVAQALGVELRKHHDATEDARACAGITIELAR 288 Query: 182 T 182 Sbjct: 289 R 289 >UniRef50_D2RB05 CRISPR-associated endoribonuclease Cas2 n=2 Tax=Gardnerella vaginalis RepID=D2RB05_GARVA Length = 359 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 58/189 (30%), Gaps = 17/189 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA--------ADPKA 54 K +V+D ETTGL+ +E+G + G+ F I + + + Sbjct: 176 KNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKIEEFQKLININCDSVSNFNKNNFIPNEI 235 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 +E+ G L + + +A E +++ G N FD + + + F Sbjct: 236 IELTGITSNMLESYGV---RLDLALKEFINFVERLPVLGYNVQFDMSFLNSALSSLDERF 292 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + K + L V + H A+ DA TA Sbjct: 293 ---DHSLSINKIFDISRFVKKEKKF---LKNYQLKTVLHEYNIAESVPHRALLDARLTAH 346 Query: 175 CFDMLRHTA 183 L Sbjct: 347 LVFNLTELL 355 >UniRef50_B0ADG9 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ADG9_9CLOT Length = 174 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 50/182 (27%), Gaps = 14/182 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + IVVDLETTGLD + + + + V+ I Sbjct: 7 DKYIVVDLETTGLDPFSGCEIIEIGITEIVNNKIGRNYSRLVKPKGIIPSHITNITSITN 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + ++ T N FD + + Sbjct: 67 DMVEDA----ESLETVLPNFRKYVGDTTIIAHNAKFDLKFLNYYLDLLGLEKI------- 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ + L K + + L+ + + H A D ATA F ++ Sbjct: 116 -NNHICTLEMLKRCK--SYKGKNKKLETACNYYNIVNEHAHRANSDTLATAKLFLTIKDE 172 Query: 183 AA 184 Sbjct: 173 VE 174 >UniRef50_A4T616 DNA polymerase III, epsilon subunit n=11 Tax=Mycobacterium RepID=A4T616_MYCGI Length = 345 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 16/173 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+G A V V L + ++ + ++ P ++G Sbjct: 32 WAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPGVDPGP--THVHGLTAEM 89 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + G++ + LRG T N FD + ++ + TV Sbjct: 90 LEGQ----PTFGDVVGDLCEVLRGRTLVAHNVGFDYSFLSAEAELVGAELPIDTV----- 140 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + E L+ +A GV + H A+ DA A Sbjct: 141 -----MCTVELARRLDLGLENLRLETLAAHWGVTQMRPHDALDDAMVLAQILK 188 >UniRef50_Q8EUK5 DNA polymerase III subunit alpha n=1 Tax=Mycoplasma penetrans RepID=Q8EUK5_MYCPE Length = 1458 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D+ETTGL +E G + G + + + K I Sbjct: 420 TYVIFDIETTGLSPYYDKIIEFGAIKYHKGVQVE-SIQMFINPEEKISDKIFAITKISNE 478 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A +++D++ + N FD + + M + Sbjct: 479 DVKDALK----IKEALVKIKDFIGDSVLIAHNGIKFDLPFLNCKLEENKMD-------II 527 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCFDMLR 180 + + + + L +A + + H A DA + + Sbjct: 528 KNPLIDT---LQISRAINEQIHGHSLGVIARKYKIDYDETQAHRADKDAEYLLNIWKRML 584 Query: 181 H 181 Sbjct: 585 E 585 >UniRef50_C0GM30 DNA polymerase III, epsilon subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GM30_9DELT Length = 249 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 11/187 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVE-QLAAADPKAMEINGYYE 62 +V+D E TGL+ V +G L + +++ I+G Sbjct: 51 DFVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACPTRDVPKQSIVIHGITP 110 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPLTV 119 + A + D+ + G N D +++ R+ + + Sbjct: 111 SEAQKA----PPLKEALQGLLDFCGNSIIVGHNINLDISVINRELKKEFGGELHNPCIDT 166 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ A L ++ G+P+ H+A DA TA+ F L Sbjct: 167 MRLARQYREGQWTGA---YECYEEYSYNLRKLSREFGLPLFTEHNAFTDALQTAYLFIYL 223 Query: 180 RHTAAAH 186 H + Sbjct: 224 VHKMQVN 230 >UniRef50_A8LH88 Exonuclease RNase T and DNA polymerase III n=2 Tax=Actinomycetales RepID=A8LH88_FRASN Length = 389 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 54/182 (29%), Gaps = 16/182 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + VVD+ETTGL + V ++ ++ ++ P + I+G Sbjct: 75 RPYAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTLLDPGCDPGP--VHIHGLTR 132 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A EV L G N AFD ++A + + Sbjct: 133 QRLAG----SPTFAAVADEVAGLLAGRVLVAHNAAFDWRMLAGEAMRIGTTIPVEW---- 184 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L L ++A GV H A DA A + Sbjct: 185 ------RLCTLTLASRLGLELPSLRLASLAAYWGVVQRRAHDAQDDAEVLAALLPRILQR 238 Query: 183 AA 184 AA Sbjct: 239 AA 240 >UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus RepID=A4VTT3_STRSY Length = 837 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + VVDLE TG D A +++G++ V+ GE + + D + G Sbjct: 25 SNRYAVVDLEATGTGTD-AKIIQIGIVLVENGEIIDSYA-TDINPYELLDDHIKNLTGIT 82 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L + + D + F N FD+ ++A Sbjct: 83 DQQLSQA----PDFGQVASTIYDMIGDAIFVAHNVKFDANLLAEALFFEGYE-------- 130 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + R+ + +L E L +AE L + + H+AI DA ATA ++ Sbjct: 131 LLTPRVDTV---ELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLLIKIQE 187 Query: 182 T 182 Sbjct: 188 K 188 >UniRef50_C5CEK5 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEK5_KOSOT Length = 180 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 60/183 (32%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 + +V+D ETTG A +E+ + V E +Y ++ I G Sbjct: 2 EFVVIDTETTGSSPHKGAELIEIAGVVVRDWEIIYEESFNELIKPKRHVPISITMITGIN 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + D++R N FD + + + P Sbjct: 62 NLMLEDKL----PIEIVLPRFYDFVRDRVLVIQNAPFDLSFLDYFGKKIGIGELP----- 112 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D + + LD + RLG+ +RH A+GDA ATA F + Sbjct: 113 ---NPFVDTISLSRSLF----RGRHNLDIILARLGIFCEDRHRALGDAVATAKAFIKMVK 165 Query: 182 TAA 184 Sbjct: 166 MIG 168 >UniRef50_B8R965 Putative DNA polymerase III epsilon subunit (Fragment) n=1 Tax=uncultured bacterium 1114 RepID=B8R965_9BACT Length = 312 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 62/181 (34%), Gaps = 16/181 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 + +D ETTGLD V +G + + V + A I+G + Sbjct: 27 PVTALDTETTGLDPGRDRIVAIGAVRLHGRRLYPSRTFETLVRPGISIPASASAIHGIGD 86 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A W + WL G G + FD ++ + ++ Sbjct: 87 AMVAGA----PGMAEIWPRLSPWLAGRVVLGHHVDFDLAMIGAAARRHGFSWTE------ 136 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D A A +D + LD A+R GV + RHSA+GD+ A + L Sbjct: 137 --PFALDTARLVAA---LDGSSPVDLDEAAQRHGVTLEGRHSALGDSLIAARVYLRLVPR 191 Query: 183 A 183 Sbjct: 192 L 192 >UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Burkholderia cepacia complex RepID=A0K8A7_BURCH Length = 212 Score = 130 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 53/186 (28%), Gaps = 18/186 (9%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + V+D ETTGL + E+ ++ + G+ + + + + G Sbjct: 9 QTVAVLDFETTGLSPNLGDRATEIAVILLRNGQVVDRFQSLM-NAGRRIPSDVVALTGIT 67 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + T + E ++ + N FD + M Sbjct: 68 NDMIA----TAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSADHAFA-- 121 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLR 180 + L ++AE L +P H A+ DA + L+ Sbjct: 122 ---------CTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMVDAEMAGHLWCRLQ 172 Query: 181 HTAAAH 186 + Sbjct: 173 QDISRT 178 >UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFY8_LIBAP Length = 245 Score = 130 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 70/180 (38%), Gaps = 19/180 (10%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYYERG 64 IV D+ETTGLD +E+G + + + + P+A++++G + Sbjct: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 Query: 65 LYREALTEQQTAVAWGEVQDWL--RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + + E D+ + + N FD + + + + Sbjct: 70 LKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-------L 118 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLR 180 R+ D + A K P+ L+++ +R G+ + +R H A+ D+ + + + Sbjct: 119 DPSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 >UniRef50_Q8D3D2 DnaQ protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3D2_WIGBR Length = 246 Score = 130 bits (326), Expect = 4e-29, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 72/187 (38%), Gaps = 18/187 (9%) Query: 2 AKQLIVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME 56 ++ IV+D ETTG++ Y +E+G + + H ++ + +A + Sbjct: 5 TERQIVLDTETTGMNKNGPHYYGHRIIEIGAIEMINRRLTGRCFHTYLKPDRLVEIEAFK 64 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 I+G + L + + ++++G+ N FD + + + + Sbjct: 65 IHGISDEFL----FFQPTFEEIMEKFINFIKGSELIIHNSVFDIGFINNEIQLCNKNLNN 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAF 174 + ++ + D + + LDA+++R G+ R H A+ DA + Sbjct: 121 I----NYYCSVIDT--LKLARNIFPG-KRNNLDALSDRYGIDTTKRILHGALLDAEILSN 173 Query: 175 CFDMLRH 181 + ++ Sbjct: 174 VYLLMTG 180 >UniRef50_C2H7V1 Possible DNA polymerase III subunit epsilon n=5 Tax=Enterococcus faecium RepID=C2H7V1_ENTFC Length = 297 Score = 130 bits (326), Expect = 4e-29, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 62/181 (34%), Gaps = 17/181 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYY 61 +V+D ETTGL + +++G + ++ E + + ++ + + +I G Sbjct: 124 DDYVVIDFETTGLSPLDSEILQIGAIKYESNEEIDR-IYQNIKPFRSNISKRITKITGLE 182 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++ ++ T N FD + Q ++ Sbjct: 183 LEDVVNM----PTFEDFSPQLMSFISCYTLVAHNAPFDLKFLLHQLNENNIEL------- 231 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + R+ + + + T L + + L + N H A+ D T + ++H Sbjct: 232 --NQRIRVIDTLPLARRHF-ETPNHKLITLKDYLNLDN-NSHDALEDCLVTNKVYQYIKH 287 Query: 182 T 182 Sbjct: 288 E 288 >UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Streptococcus pneumoniae SP23-BS72 RepID=A5MUE3_STRPN Length = 308 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 61/186 (32%), Gaps = 18/186 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M I +D+ET + +GL+ G+ + + + + ++I+ Sbjct: 1 MTYSFIALDVET--ANSFRGSLCSIGLVKFIDGQEVD-SFYTLINPEEKFSSRNIKIHAI 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + E+ +++ N FD+ + + Y +PF + Sbjct: 58 KPEDV----IGAPTFPEVQKEIINFIDNLPIVAHNARFDAYALQDVYLKYEIPFDNIQYF 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +Y K+ + L +AE + + + H+A+ DA A + Sbjct: 114 ----------CSYQVCKIILTDLPNHKLHTLAEHFKISL-DHHNALSDARACGLILLEIL 162 Query: 181 HTAAAH 186 + Sbjct: 163 KLSKQT 168 >UniRef50_C5VD41 DNA polymerase III epsilon subunit n=2 Tax=Corynebacterium matruchotii RepID=C5VD41_9CORY Length = 444 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 58/177 (32%), Gaps = 18/177 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYYE 62 + VD+ET + D ++G++ V G + + D + I+G Sbjct: 101 FVGVDVET--ANADWGSICQIGVVRVTDGMQVDSHEWLCRPPAGIDHFDEGNIRIHGITP 158 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + EV ++ N FD T +R P Sbjct: 159 DMVTDA----PDFAAVFPEVVAYVADQVLVAHNAQFDLTAFSRACHATGTPVPHWKFA-- 212 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + AA + L VA+ LGV + N H A+ DA A A F L Sbjct: 213 --------CSLAASRAAKLGITSHRLPVVAQHLGVELDNHHDAVADARACAGIFVQL 261 >UniRef50_A6GRM1 DNA polymerase III subunit epsilon n=1 Tax=Limnobacter sp. MED105 RepID=A6GRM1_9BURK Length = 248 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 56/186 (30%), Gaps = 9/186 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +D ETTGL+ + + +G + + + L + ++ A + I+G Sbjct: 54 PMLAIDFETTGLNPEYDDIISIGAVPLMSNRIMLGQSRYWILKPAAKLRSDTIPIHGITH 113 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLTV 119 + E+ + G A ++ + + F + Sbjct: 114 SDIANA----PDLIDVLPELLKMMSGKLAVAHCAAIETRFLDTALQYRVGEGIVFPVIDT 169 Query: 120 GRVWHHRLADLAA-YAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H + L + +R +P H+A+ DA A A Sbjct: 170 MGIERHFSDHQNSGLFERMFRKSQGASLRLPDIRKRYKLPFYRPHNALVDALACAELLQA 229 Query: 179 LRHTAA 184 A Sbjct: 230 QIQHHA 235 >UniRef50_D0L0M1 DNA polymerase III, epsilon subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0M1_HALNC Length = 481 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 16/185 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + L +D+ETTG + E+G++ + + A + + G Sbjct: 19 QPLACLDIETTGSHTERDRITEIGIVTLHPDG-TQSNWSCLIHPGCAIPARITTLTGITN 77 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + + L + N FD + + + F+P Sbjct: 78 EMVADQ----PVFAHRAQALLERLENHIVIAHNARFDLGFLKQAFRREGIRFNPSV---- 129 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + LD+V +R+G+ RH A+GDAA A L T Sbjct: 130 -------LCSVKLSRQMFPAERRHNLDSVMQRMGLSCAARHRALGDAAVVADFITTLACT 182 Query: 183 AAAHL 187 A L Sbjct: 183 RAEEL 187 >UniRef50_B3RU88 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RU88_TRIAD Length = 289 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 18/184 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ETTGL +E+G L + + + +A E++ + Sbjct: 16 VVLDTETTGLSVRTGHRIIEIGCLELIDHQPTSRTFQCYINPKFPVSERAFEVHHLSNKF 75 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + +D+++ +T N FD + + ++P + Sbjct: 76 LEG----FPTFDGIVQDFRDFIQEDTLIIHNGHFDIKFINNEFQKLNIP-------EISF 124 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR---HSAIGDAAATAFCFDMLRH 181 R+ D A + P + LD++ +R + +R H A+ D + L Sbjct: 125 ERVIDTMLMA---RKLYPRQPASLDSLCDRFNIDKSSRSLGHGALTDVKLLQLVYAKLLK 181 Query: 182 TAAA 185 A Sbjct: 182 DQDA 185 >UniRef50_Q2SSE0 DNA polymerase III, alpha subunit, Gram-positive type n=4 Tax=Mollicutes RepID=Q2SSE0_MYCCT Length = 1479 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 61/180 (33%), Gaps = 16/180 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ DLETTGL + +E G + + I ++ + ++ E Sbjct: 431 KMVFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKSKLKDFTKKLTNINEE 490 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + VA+ E+ ++ N FD T ++ G++ Sbjct: 491 MLENK----PGIEVAFKEINQVIKDAILVAHNANFDYTFLSHWSEKLGY-------GKLE 539 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRH 181 + + ++ + L ++A+R+ + H DA A ++ + Sbjct: 540 NTIIDT---LTISRIIYPELKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLD 596 >UniRef50_C6IVA0 DNA polymerase III n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVA0_9BACL Length = 247 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 53/181 (29%), Gaps = 14/181 (7%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V DLETTG Y + G + V+ V + + + +E+ G Sbjct: 64 AVFDLETTGFHYHYGDEILSFGAIKVEGERITDEVYYSLAKPACQIPERIIELTGITPEM 123 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A E ++ A D + T Sbjct: 124 AQ----SAPSLLEALREFMAFVDDRVLVAHGSAHDKAFLDVALWK--------TTKAHLG 171 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 HR+ D A KL D LD +PV RH A+ D+ TA + L Sbjct: 172 HRVLDTMMIAR-KLEPDRRISGSLDEWLAVYEIPVTKRHHALEDSKMTAQLWTALIQRLK 230 Query: 185 A 185 Sbjct: 231 E 231 >UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BJL1_9LACT Length = 873 Score = 129 bits (324), Expect = 5e-29, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 18/187 (9%) Query: 1 MAKQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M VVDLETTG + + G ++ GE + + + + ++ G Sbjct: 1 MKTSYAVVDLETTGPKFEEGGRIFQFGCSIIEQGEIVT-QVDLYINPETTIPYEIQQLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLT 118 ++ + + + L G TF N +FD + + + +S Sbjct: 60 VDKKEVKQA----PYFDEVASTIFQLLEGKTFVAHNISFDYSYLVESFRELAGIEWSAPC 115 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 V ++ E L + + L +P HSA DA ATA F Sbjct: 116 VD-----------TVQLAQICYPTIESYRLQDLTQLLEIPHQQIHSAGSDAYATAQLFLN 164 Query: 179 LRHTAAA 185 Sbjct: 165 CLEELEQ 171 >UniRef50_A7K086 DNA polymerase III epsilon subunit n=22 Tax=Vibrionaceae RepID=A7K086_VIBSE Length = 248 Score = 129 bits (324), Expect = 5e-29, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 8/184 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 + VD ETTGL+ + + +GL+ H V + +++ I+G + Sbjct: 57 PFVSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWVVNPNRELNEESVVIHGITD 116 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLTV 119 + Q GE+ D L G + + + F + Sbjct: 117 SEVKNA----PQLTHILGEILDALSGKVVLVHYKNIERQFFNNALLNSIGEGIHFPVVDT 172 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + H + KL L ER +P H A+ DA ATA F Sbjct: 173 LDIEHAIQRRECSGLFNKLKGKKPGSVRLGHARERYRLPAYQPHHALTDALATAELFQAQ 232 Query: 180 RHTA 183 Sbjct: 233 LQYH 236 >UniRef50_B0TF42 DNA polymerase iii polc-type n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TF42_HELMI Length = 255 Score = 129 bits (324), Expect = 6e-29, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 60/190 (31%), Gaps = 24/190 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL---------YFVPHITVEQLAAADPKA 54 +V D ETTGL + +G + + G V V A Sbjct: 61 TFVVFDTETTGLSVPNDDVIALGGVALPPGGEGAEWTEDTGKVRVFDRLVNPHRPIPVLA 120 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 EI G + + ++ + D++ G AFD + + Sbjct: 121 REITGIDDDMV----FSQPTIYPVLDDFLDFIDGAVLVAHGIAFDVGFLDKYLRPL---- 172 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 +++H + + ++ LDA+ G+ RHSA+GDA TA Sbjct: 173 ----RTKLYHPVIDTIT---LSRVLEPFRAEHSLDALVADYGITPRRRHSALGDAQMTAD 225 Query: 175 CFDMLRHTAA 184 F + Sbjct: 226 LFAAMLVRLQ 235 >UniRef50_D2BQ89 DNA polymerase III, epsilon chain n=4 Tax=Lactococcus lactis RepID=D2BQ89_LACLK Length = 277 Score = 129 bits (324), Expect = 6e-29, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 60/183 (32%), Gaps = 15/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITVEQLAAADPKAMEING 59 M+++ +V D ETTG +++G + D + + Q + + ++ G Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L L + E D+++G+ N FD + + + + Sbjct: 61 IKPADL----LNQPTIEEILPEFLDFIKGHLLVAHNAPFDISFLYQAI---------IDC 107 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 A K + L+ + L + + H A+ D TA + L Sbjct: 108 AITDVEAFRVYDTLAESKKLL-TMSSYALENFKDLLEMNDLRSHDALNDCLITAKLYQYL 166 Query: 180 RHT 182 + Sbjct: 167 QKI 169 >UniRef50_B0RTE6 DNA polymerase III epsilon chain n=11 Tax=Proteobacteria RepID=B0RTE6_XANCB Length = 245 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 64/183 (34%), Gaps = 14/183 (7%) Query: 6 IVVDLETTGL-DYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D ETTGL VE+G + + H + +P A E+ G Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDCDFEPGAQEVTGLTLEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A E ++ G N AFD + + F + + Sbjct: 64 LADK----PVFAEVVEEFLAYIDGAELIIHNAAFDLGFLDNELSLLGDQFGRI----IDR 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + D A + P + LDA+ +RLGV +R H A+ DA A + L Sbjct: 116 ATVVDTLMMARER---YPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSG 172 Query: 183 AAA 185 Sbjct: 173 QEE 175 >UniRef50_D1B3F1 DNA polymerase III, epsilon subunit n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3F1_SULD5 Length = 260 Score = 128 bits (322), Expect = 9e-29, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 17/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VD+E G +E+G + V+ G+ + ++ + +++ G Sbjct: 70 KFCIVDIEANGSKPALDAIIEIGAVMVEKGKIVG--EFSSLAKTDVLPESIVQLTGITLE 127 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + +++ F N FD ++ G + Sbjct: 128 EL----SFAPSLNSVLEGFRLFIKDAVFVAHNVNFDYYFISHSLEMAGF-------GPLL 176 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + RL + GL A+AE LG+ N H A+ DA AT Sbjct: 177 NRRLDTIDLARKCI----EAPKYGLSALAEHLGITFENHHRALYDAKATTEVLLH 227 >UniRef50_Q31RN6 Exonuclease n=2 Tax=Synechococcus elongatus RepID=Q31RN6_SYNE7 Length = 256 Score = 128 bits (322), Expect = 9e-29, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 47/171 (27%), Gaps = 12/171 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A VVD+ETTG A +E+G+L E + F + + G Sbjct: 19 AATFTVVDVETTGFKPPQARVIELGILQATLAEGIQFQQAELLNPGIPIPEAIAQFTGIT 78 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + L+ N FD + + + F + Sbjct: 79 TDLIATADPP----ESVLPPLLPRLQTGILVAHNLPFDYRFLTAEYQQLGLDFERSPTEQ 134 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 L + + L + + G PV H A D A Sbjct: 135 --------LCTVQMSRQLLADLPSRSLPQLVQHFGFPVGQSHRAAADVEAC 177 >UniRef50_C9RIR1 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIR1_FIBSS Length = 215 Score = 128 bits (322), Expect = 9e-29, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 53/199 (26%), Gaps = 30/199 (15%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLN----VDTGESL---YFVPHITVEQLAAADPK 53 + + + DLETTGL +E+G + V G + V+ + Sbjct: 4 LPPKFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPNMLIPAE 63 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSM 112 A +N ++ + A + + + N FD++ + Sbjct: 64 ATNVNHITDKMVENA----PPVGEALKQFTAFCGPGSILLAHNANFDASFLRTAYEQN-- 117 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--------GVPVVNRHS 164 + + + A K + L +A + H Sbjct: 118 --------PQFTPGNPVVDSLAISKTIMPELANHKLGFMANMFMKRGEISMTIDEEKMHR 169 Query: 165 AIGDAAATAFCFDMLRHTA 183 ++ D F L Sbjct: 170 SVYDCEMLMEVFVALLRRR 188 >UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchnera aphidicola RepID=DPO3E_BUCBP Length = 245 Score = 128 bits (322), Expect = 1e-28, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 18/182 (9%) Query: 6 IVVDLETTGLDYDT-----ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D+ETTG++ +E+G + + H ++ D ++ +I+G Sbjct: 8 IVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIHGI 67 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + + +++ + N FD + + + ++ Sbjct: 68 TDNFLLDK----PKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKIS-- 121 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + D + + LDA+ R + V +R HSA+ DA A + Sbjct: 122 --DYCNVVDT--LPLARQLFPGKKN-SLDALCNRYKINVSHRDFHSALIDAKLLAKVYTF 176 Query: 179 LR 180 + Sbjct: 177 MT 178 >UniRef50_B2A7J4 DNA polymerase III, epsilon subunit n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7J4_NATTJ Length = 864 Score = 128 bits (322), Expect = 1e-28, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 64/185 (34%), Gaps = 15/185 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +L+V D+ETTGLD +E+ L + + + ++ +++G + Sbjct: 498 NKLVVFDVETTGLDTTKDEIIELAALKAGKDGVVD--EFHEYLRNSKPVGESFQVHGISD 555 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + ++ + +++ G N +D T+V Q + Sbjct: 556 QVLLEQGKPPEK---SLASFTNFIDDCDLVGHNVNYDITMVENQCKKL-------LNQDL 605 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 H + + E L+++ E L + H A+ D AT +L Sbjct: 606 ELHGYDTVDI---SRRYFPRLEKYNLESLCEDLQISSKPTHRAMDDVEATFELLQILLEK 662 Query: 183 AAAHL 187 + Sbjct: 663 IKPGI 667 >UniRef50_C1XKD8 DNA polymerase III, alpha subunit (Gram-positive type) n=2 Tax=Meiothermus RepID=C1XKD8_MEIRU Length = 261 Score = 128 bits (322), Expect = 1e-28, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++V+D+ETTGL +E+ L+ ++ G F V P + G Sbjct: 79 QGEAVVVLDIETTGLSPTDHEIIELALIRLENGRRTVFER--LVNPGVLIPPFISRLTGI 136 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A E L T N +FD + + Sbjct: 137 RSQDVRDAA----DIYTVLEEAWPLLDNATLIIQNASFDLGFLQPRFKRLGY-------- 184 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDML 179 R+ + + + + + GLD++A + P+ RH A+GD T + Sbjct: 185 RLDNPVVDTIH---WARKALPGLTKRGLDSLAWAFDLGPIPARHRAMGDVETTLQVAHEM 241 >UniRef50_Q1V197 DNA polymerase III n=3 Tax=Candidatus Pelagibacter RepID=Q1V197_PELUB Length = 223 Score = 128 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGL D VE+G + ++ H + KA+E++GY + Sbjct: 4 VILDTETTGLSVRDGHRIVEIGCIELENLIPTKNRFHCYLNPERKVSEKALEVHGYTDEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L T ++ E ++ N FD + + + Sbjct: 64 L----STHKKFGDIVDEFLVFIENKRLVIHNAEFDLSHLNNELSLLGKEKLNSENV---- 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + A + + LDA+ +R + R H+A+ D A + L Sbjct: 116 -----VDTLALARDKFPGSP-ISLDALCKRYRIDNSKRTQHTALIDCDLLAKVYINLLDQ 169 Query: 183 AAAHL 187 L Sbjct: 170 KEPTL 174 >UniRef50_UPI0000D530A7 DNA polymerase III subunit epsilon n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D530A7 Length = 226 Score = 128 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 19/186 (10%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D+ETTGLDY + +E+G + + + + H + L + ++I+G Sbjct: 4 IILDIETTGLDYKEGHRIIEIGCVEL-NQKEVGSNFHQYINPLKTLTDENIKIHGITNEF 62 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + ++++ + N FD + + S P ++ Sbjct: 63 LEDK----PLFEDVADKFLNFIKDSQIIAHNANFDVGFLNYELEKVSKP-------QIAK 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP---VVNRHSAIGDAAATAFCFDMLRH 181 R+ D A + P + LDA+ ++L V H A+ DA + L+ Sbjct: 112 DRIVDTVVIARNRF---PGQQVNLDALVKKLKVNSLVDREFHGALKDAKILTDVYLELQG 168 Query: 182 TAAAHL 187 L Sbjct: 169 INQMGL 174 >UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TRJ1_9FLAO Length = 229 Score = 128 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 14/186 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V D ETTGLDY + +G + V + + + +P + +I+G Sbjct: 42 QNTRFVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQDFYNPDSAQIHGI 101 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + A + D++ + G + FD +V + + G Sbjct: 102 ----LKQGNYLKVNEKEAIAQCLDFIGTDILVGHHVGFDVAVVNQSLKRAGL-------G 150 Query: 121 RVWHHRLADLAAYAAGKLNIDPT---ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 R+ + +L Y ++ + LD +AE L +P+ +RH+A GD+ TA F Sbjct: 151 RLKNRQLDTEILYKRLVHPVNRPLQDKRYTLDELAEALKIPLHDRHTAAGDSLITALAFI 210 Query: 178 MLRHTA 183 + H Sbjct: 211 KIVHKL 216 >UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular organisms RepID=C1FD33_9CHLO Length = 1473 Score = 128 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 59/189 (31%), Gaps = 20/189 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++V DLETTGL+ D +E+ +NV + + A P + + G Sbjct: 295 VVVFDLETTGLNKDRNRIIEIAAVNVSDPTHQPMSTLVNPGRFA-VPPPVVALTGITNAM 353 Query: 65 LYR-EALTEQQTAVAWGEVQDWLRGNT------FAGSNP-AFDSTIVARQRVTYSMPFSP 116 + + Q+ A + E D R A N FD+ + + Sbjct: 354 VSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEYRRLGRELPE 413 Query: 117 LTVGRVWHHRLADLAAYAAGKLNID--PTELEGLDAVAERLGVPVVN--RHSAIGDAAAT 172 R D A L + P L+++A GV H A DA Sbjct: 414 D-------WRFVDTLPLARKTLAKEAVPGGSYKLESLAAHFGVDTAGASAHRAEADARML 466 Query: 173 AFCFDMLRH 181 L Sbjct: 467 GDVLQRLVG 475 >UniRef50_Q9K6I8 BH3741 protein n=1 Tax=Bacillus halodurans RepID=Q9K6I8_BACHD Length = 219 Score = 128 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 12/183 (6%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V D ETTG +EV ++V+ E F V + E+ G E Sbjct: 27 FTVFDTETTGFAVGAGDRLIEVAAVHVEGLEVTDFTFQTYVNPERNIPAEIEELTGISED 86 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + + G +FD T++ ++ Y + + Sbjct: 87 KVKNAPASLPAIESFF-RFVEQSGSAAWVGHYASFDVTVLKKELQRYQFSLNVPLLFDT- 144 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + K D L+ A++ G + RH A+GDA TA F L Sbjct: 145 ---LDLIGYISPSKDMRD------LEVYAKQFGTYIYERHQALGDALTTAHLFCELLRHL 195 Query: 184 AAH 186 A Sbjct: 196 EAR 198 >UniRef50_UPI000196B395 hypothetical protein CATMIT_00376 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B395 Length = 212 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 26/193 (13%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITV------------EQLA 48 IVVD+E TGL+ +T +EV + + + F I ++ Sbjct: 12 PDTYIVVDIEATGLNPETERLIEVAAIKYINHKEVARFSELINPLRDQLPVDLLDKDKTI 71 Query: 49 AADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV 108 + G R L+ E ++ + G N FD + + Sbjct: 72 YISDFIENLTGISNRMLHDARGE----KDVLREYIKFIGNDVIIGHNVRFDIRFIYDALL 127 Query: 109 TYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 G ++ + D A KL + + L +A+ + + H A+ D Sbjct: 128 R--------DYGVLFQNDYIDTLKIAR-KLLHEDLKRYRLKDLADHYHIDYSHAHRAVND 178 Query: 169 AAATAFCFDMLRH 181 T ++M+ Sbjct: 179 CEITHDVYEMMME 191 >UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=10 Tax=Clostridium RepID=A5I1F6_CLOBH Length = 855 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 13/182 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + ++V D+E+TG++ V++ + ++ + + ++G+ Sbjct: 492 NENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVI-ESFQRFLTPKKFVGDSYLVHGFS 550 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L + V + ++++ G N AFD +I+ + S+ + Sbjct: 551 DQFLKENGENK---KVVLKDFLEFIKDTVIVGHNVAFDISILNSELERLSLEKASFKT-- 605 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L+ +++ + H A+ D AT + Sbjct: 606 -------YYDTLDIARRFYPNLTNHKLETLSKLFNTETKSSHDAMDDILATKDVLMAMLK 658 Query: 182 TA 183 Sbjct: 659 EK 660 >UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8CUQ0_OCEIH Length = 195 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 18/175 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ET + VG++ ++ E + + + LA+ + I+G E Sbjct: 3 KFAAIDFET--ANEKRNSACSVGVVIMNDTEIID-EFYTLINPLASFRSGNVFIHGITEE 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A W + +L N +FD +++ + Y +P T Sbjct: 60 QVQEA----PTFAELWPTLSAYLEDTILIAHNASFDMSVLRQSLNKYDIPCPNYTS---- 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L +L E L VA G+ + N H A+ DA A+A F Sbjct: 112 ------LCTVKISRLIWPQLENHKLHTVANHHGIAL-NHHHAMDDARASAKIFLA 159 >UniRef50_A8F6Z7 DNA polymerase III, epsilon subunit n=1 Tax=Thermotoga lettingae TMO RepID=A8F6Z7_THELT Length = 188 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 19/184 (10%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 +D ETTG+D + VEV ++ V G LY H V +I+ Sbjct: 8 FCAMDTETTGIDPMNGDRIVEVAIVPVYKGRILYRSIYHTLVNPKIRIPATIEKIHRITN 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +G+++ ++R + FD T + + + Sbjct: 68 EDIENA----PTIEQVFGQMRSFMRRSIMIFHRAEFDLTFIDISAKEIGIFPPSID---- 119 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D + L +AER G N H A+ DA TA F + Sbjct: 120 ----YIDTREISEIIFGEKKA----LSWLAERFGFEKPN-HRALTDAITTAKLFLKMTRK 170 Query: 183 AAAH 186 A Sbjct: 171 LAGS 174 >UniRef50_A9HX18 Putative exonuclease n=1 Tax=Bordetella petrii DSM 12804 RepID=A9HX18_BORPD Length = 177 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V DLETTGL + +E ++V ++ V P + G + Sbjct: 7 PFAVADLETTGLSTASCEILEFAAVHVGPDGAIEREFSQVVRTRGTVPPFITRLTGITQA 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + A A+ +L N +FD + +PF+ Sbjct: 67 EVDGHGIP---VAEAFSAFLAFLADAPVFFHNASFDCRFLQAAAEHTGLPFANA------ 117 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L +A +G H A+ D +T R Sbjct: 118 -----THCTLQLARQAWPELPSHKLQVLARHVG-AADPTHRALADVRSTVAVALAARRKL 171 Query: 184 AA 185 A Sbjct: 172 AG 173 >UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q2F7_CATAD Length = 204 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 16/172 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+G A +EV +++VD + + A ++G Sbjct: 12 YAVVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQGGV--GATRVHGITREM 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + E+ L N AFD+ + Q + + G Sbjct: 70 VE----PAPRFEDVGMELHGLLVDRVVVAHNLAFDAKFLVTQFARLGVHSPEIAGGA--- 122 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + L E +GV + + HSA+GDA ATA Sbjct: 123 ------CTLRTSQAMLPG-PSYKLLDCCEAVGVELTDAHSALGDALATARLL 167 >UniRef50_B8EEZ7 DNA polymerase III, epsilon subunit n=2 Tax=Shewanella RepID=B8EEZ7_SHEB2 Length = 300 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 16/173 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I +D ETTGL D +E+ + D + + V + K I G Sbjct: 19 FIALDAETTGLSADVDKIIEIAAIKFDLLSNDHPVFEALINPNVKVSRKITSITGITNAM 78 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + +++ ++ N FD + + + + + Sbjct: 79 LADQ----ETFTDIAQDLKQFIGDLPIVAYNAKFDKGFLDTEFANVGI---------ILN 125 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + A N+ L VAE +P+ H A DA A F Sbjct: 126 NHYHCALNLAKAAFNLP---NYKLATVAEHCSIPLNEAHRAKADAVAAGRVFM 175 >UniRef50_B5XKK7 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=33 Tax=Streptococcus RepID=B5XKK7_STRPZ Length = 833 Score = 126 bits (318), Expect = 3e-28, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 17/183 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ VVDLE TG + ++ ++ + + + D + + G + Sbjct: 21 RKYAVVDLEATGAGPNASIIQVGIVIIQGNKIIDSYETDV--NPHESLDEHIVHLTGITD 78 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + + + F N FD+ ++A Sbjct: 79 KQLAKA----PDFGQVAHHIYQLIEDCIFVAHNVKFDANLLAEALFLEGYEL-------- 126 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + +L E L ++ +L + + H+AI DA ATA F L Sbjct: 127 ---TIPRVDTVELAQLFFPRFEKYNLGHLSRQLNIDLAEAHTAIADARATAILFLRLLQK 183 Query: 183 AAA 185 + Sbjct: 184 IES 186 >UniRef50_B9JXT6 DNA polymerase III epsilon subunit-like 3-5 exonuclease n=8 Tax=Rhizobium/Agrobacterium group RepID=B9JXT6_AGRVS Length = 207 Score = 126 bits (318), Expect = 3e-28, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 17/185 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++I +D ET + + VGL V+ G+ + + + + I+G Sbjct: 5 LQPKIIAIDFET--ANEERGSACSVGLAFVENGQVVRVEERLIRPKTMRFSSFNIAIHGI 62 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + E D G N AFD ++ Y P+ L+ Sbjct: 63 RPDHVEDAG----EFPEVMDEFADDFSGAMVVAHNAAFDLSVWRASCDLYRQPYPSLSY- 117 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + L+ +A L + H+A DA+ A + Sbjct: 118 ---------VCSVKLAQKVWPQLPSHRLNVLAAHLQLSF-RHHNAAEDASVCAQAVIAMM 167 Query: 181 HTAAA 185 A Sbjct: 168 ERRGA 172 >UniRef50_A5IU60 Exonuclease, RNase T and DNA polymerase III n=64 Tax=Staphylococcaceae RepID=A5IU60_STAA9 Length = 184 Score = 126 bits (318), Expect = 3e-28, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 19/182 (10%) Query: 1 MAKQ-LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + + +D ET + VG++ V + H V + ++++G Sbjct: 1 MIQDAFVALDFET--ANGKRTSICSVGMVKVIDSQITE-TFHTLVNPQDYFSQQNIKVHG 57 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + ++ N AFD ++ + +P LT Sbjct: 58 IQPEDVENA----PTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTY 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + +Y GL + E + H A+ DA A A L Sbjct: 114 FCSYQLAKRTVDSY-----------RYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRL 162 Query: 180 RH 181 Sbjct: 163 LK 164 >UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=53 Tax=Staphylococcus RepID=DING_STAAB Length = 897 Score = 126 bits (318), Expect = 3e-28, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 15/174 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG D +++G+ V + + H + P + E Sbjct: 5 TYAVVDLETTGNQLDFDDIIQIGITFVRNIQIID-TYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + D ++ F N FD + + ++ + P Sbjct: 64 MLQQA----PYFNQVAQGIYDNMKDCIFVAHNVDFDLNFIKKAFKDCNIQYRP------- 112 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 R+ D K+ + L +AE G+ + N H A DAA TA Sbjct: 113 -KRVIDT--LEIFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLMI 163 >UniRef50_Q1NJL0 DNA polymerase III, epsilon subunit n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJL0_9DELT Length = 238 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 56/181 (30%), Gaps = 6/181 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 +V D E TGLD V +G + ++ + ++ V+ A + I+ Sbjct: 39 DFVVFDTELTGLDRRRDEIVSIGAVRINNLRIMVGDTFYVQVKPSQALPKDSTLIHRLTP 98 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTVGR 121 L A D+ + G D V R + Y S + Sbjct: 99 HQLSDA----PPLATVLPGFIDYCGQSLLVGHFVGLDVAFVNRACLRYYGARLSNPCLDT 154 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + L A+ + G+P H+A DA TA+ F L Sbjct: 155 MHLAQTHTEMQWQQYHDRFRMDISYNLAALGAKYGLPAFTHHNAYEDALQTAYLFIYLVK 214 Query: 182 T 182 Sbjct: 215 K 215 >UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseudomonas syringae group RepID=Q4ZNE2_PSEU2 Length = 204 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 51/188 (27%), Gaps = 18/188 (9%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M +++ V+D ETTG+ E+ ++ ++ G + + + G Sbjct: 1 MLERIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVERFQSLM-NAGVRIPAFIEGLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + T G+V D++ N +FD + Sbjct: 60 ISNNMIR----TAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRTREQSFA 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDM 178 + + + L + +P H A+ DA A Sbjct: 116 -----------CSLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAH 164 Query: 179 LRHTAAAH 186 L + Sbjct: 165 LTNELRQT 172 >UniRef50_C9RIV2 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIV2_FIBSS Length = 188 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 16/161 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLETTG + +E+G+ +D E + H V+ P E+ G + Sbjct: 3 KFAVVDLETTGGHGEDNRIMEIGIALMDGSEIVE-TYHALVDPGKPITPFVRELTGITDE 61 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + Q V V L+ F N FD + + + F+P Sbjct: 62 MVSGQ----PQFGVIAEHVAALLQDRIFVAHNVQFDCKYMTAELKRCCIKFNPA------ 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 L + L + E LG+P N H Sbjct: 112 -----RLCTVKLSRRVFPGQPSYSLHKLTESLGLPDFNHHR 147 >UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 family protein n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BET5_9FIRM Length = 295 Score = 126 bits (317), Expect = 4e-28, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 55/186 (29%), Gaps = 20/186 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K I++DLETTGLD +E+G + + + Q K I G Sbjct: 126 TKAYIIIDLETTGLDPINDRIIEIGAIKI---GKENKEYSSIIWQDIKLSEKISNITGIS 182 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + A E D++ +T G N FD + P Sbjct: 183 DEDIKKGK----DEKNAINEFIDFIGEDTLVGYNINFDIKFINESLKRQEKPKIKNMTYD 238 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC---FDM 178 V + D + L+ V + G+ H A+ D + Sbjct: 239 VMQYVKNDKLFL----------KNYKLETVIKEYGINKNVPHRALEDVKIIQKLIAKLNK 288 Query: 179 LRHTAA 184 L Sbjct: 289 LVKRLE 294 >UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8GAH5_CHLAD Length = 233 Score = 126 bits (317), Expect = 4e-28, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 10/180 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL---YFVPHITVEQLAAADPKAMEINGY 60 V+D+ETTGLD + +G +NV+ G L + I +++ ++ Sbjct: 37 PYTVIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHL 96 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS--MPFSPLT 118 L A E+ + G D + + + L Sbjct: 97 TPEELRDA----PPPAEVLAELLRLIAGRVLVVHVAEIDVRFINAALKPFGGRLRRPILD 152 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R+ + ++ L + LG+P+ +H+A+ DA TA F Sbjct: 153 TARLAMTLHLNAQWLGELPRDMP-APAVELRGLTGALGLPIYAQHNALNDAVTTAQLFIA 211 >UniRef50_Q0BM06 DNA-directed DNA polymerase n=20 Tax=Francisella RepID=Q0BM06_FRATO Length = 238 Score = 126 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 13/184 (7%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M++Q + +D ETTG DY +E G + V H + A+ I+G Sbjct: 9 MSRQ-VFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYKVEAGALAIHG 67 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E+ ++LRG N AFD + + + + Sbjct: 68 LTNEFLADK----PLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSL--LKNNKYGT 121 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 ++ D A K P + LDA+ +R + +R H A+ D+ A + Sbjct: 122 LEQNVAKIVDSLDLARKK---HPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYL 178 Query: 178 MLRH 181 + Sbjct: 179 AMTG 182 >UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WWQ3_ALIAD Length = 240 Score = 126 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 27/188 (14%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +VVD ETTGL + VE+ L+ V V V+ P+A ++ Sbjct: 4 QEARFVVVDTETTGLPPEG-RVVELALVEVGLECEPQIVYSALVDPGCPIPPEASAVHHI 62 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 +R + + + + W +V ++ N FD ++ Sbjct: 63 TDRDVAGK----PRLSQVWPKVLGYIGDAILVAHNAEFDRGMLPETGR------------ 106 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCFDM 178 + + + + LG+ V H A+GDA TA F Sbjct: 107 -------PWICSKRLAQHLWRDAPKHSNQVLRYWLGIDVEVGQPHRALGDAIVTAHVFQR 159 Query: 179 -LRHTAAA 185 LR A Sbjct: 160 ELRAYLEA 167 >UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N494_SLAHD Length = 986 Score = 126 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 59/180 (32%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + L+V+D ETTGL Y+ ++ ++ GE + V + + + Sbjct: 2 LDRNLVVLDTETTGLSYNHDELTQIAAARMECGEITDWFV-TFVNPGKPIPDEIVRLTNI 60 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + + A + +++ N FD + + Sbjct: 61 HDEDV----VDAPTPDEARALLAEFIGDAYVVAHNADFDKHFCTKSESGECL-------- 108 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +R + + A ++ + + L + P+ H A D A + +L Sbjct: 109 ----NRNIWVDSLALARIALPRMKSHRLIDLVHAFDAPIS-THRADADVEALCAVYRILL 163 >UniRef50_Q03AH5 DNA polymerase III, epsilon subunit related 3'-5' exonuclease n=54 Tax=Lactobacillales RepID=Q03AH5_LACC3 Length = 180 Score = 126 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 56/176 (31%), Gaps = 18/176 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D ET + A + L+ V + + + + D + + I+G Sbjct: 2 DFIAMDFET--ANRKRASACSLALVVVQQNKVVD-SFYTLINPQMQFDAQNIHIHGITPE 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + W +Q + N FD +++ Y + V Sbjct: 59 MVQDQ----PTFDQVWPHIQMFYTPGRIVTAHNAPFDVSVMRLTLDRYGIAAPRYQV--- 111 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + LD V+ L +P+ + H+A+ D+ A A Sbjct: 112 -------IDTVKTSRQFLPKLPNHRLDTVSAALHIPLEHHHNALADSYACARILIA 160 >UniRef50_Q03C57 3'-5' exonuclease and CRISPR-associated protein cas2 n=3 Tax=Lactobacillus RepID=Q03C57_LACC3 Length = 301 Score = 126 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 14/179 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D+ETTGLD + + +G + + V ++ G Sbjct: 129 PFVALDIETTGLDAERDAIIAIGAVK-GPSVNETEKFTTLVNPRRPLPSTVAKLTGLSAE 187 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ + A ++D+ G N FD ++ + + Sbjct: 188 ELVANGIS---LSEAVQALRDFTGSLPLVGYNLRFDMGFLSAAGRETGLTSFGNQTFDL- 243 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 K + + L V + H A+ DA AT D L Sbjct: 244 ---------LPLVKKSSRFLDNYKLSTVLAHYQIDNEQPHHALSDATATMALADKLIKK 293 >UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales RepID=Q252U5_CHLFF Length = 249 Score = 126 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 16/179 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D E TGLD +E + + + ++ I+ + Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAKRFTFDNVIDSME-TLINPDRVISAESQRIHRISDAM 67 Query: 65 LYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + + ++Q +L+ + G + FD ++ ++ F + Sbjct: 68 LKDQ----PRISEVFPKIQAFLKEGDYIVGHSVGFDLQVLTQEAERIGETF-------LS 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + D A + L+A+A VP H A+ D F Sbjct: 117 KYCIIDTLRLA---KEYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEININIFKHFCKR 172 >UniRef50_B1I518 DNA-directed DNA polymerase n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I518_DESAP Length = 236 Score = 125 bits (315), Expect = 6e-28, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 14/171 (8%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+D ETTGL D + V + V + + + V+ A I G Sbjct: 49 YSVIDTETTGLRPDAGDEVISVACVRVVSAKIQNDYFYTLVDPEREVPELAATITGITTE 108 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + G G N FD + + Sbjct: 109 RVQGQ----PVLEKVLPRMLREMAGGVITGFNIQFDLVFLNNGLKR-------KCGTTLN 157 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + D+ + ++ GL A+A + V +RH+A+GDA TA Sbjct: 158 PPMVLDV--LSLCRILKPRARTFGLGAMAREYQISVKDRHNALGDALITAR 206 >UniRef50_C5F3P4 DNA polymerase III n=1 Tax=Lactobacillus paracasei subsp. paracasei 8700:2 RepID=C5F3P4_LACPA Length = 309 Score = 125 bits (315), Expect = 6e-28, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 19/185 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 IV+D+ETTGL + +++ L V + + V+ + + I G Sbjct: 44 DYIVLDIETTGLSSVSDDIIQLSALKVKEDKVID-TFDSYVKPSTSIPENVVYITGITNS 102 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + G G N FD + + + Sbjct: 103 TVENA----PEIFEIMPKFVSFTEGMPLVGHNIIRFDIPFIVNN----GFYYEDIEA--- 151 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D A K +P + L + E G+ H+A+ D T + LR Sbjct: 152 -----LDTWRLAKNKDFPEPLKNLKLPTLKEYFGISGS-SHNALDDCKTTITVYRHLRDN 205 Query: 183 AAAHL 187 + Sbjct: 206 KLERI 210 >UniRef50_A9AZA6 DNA polymerase III, epsilon subunit n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AZA6_HERA2 Length = 282 Score = 125 bits (314), Expect = 7e-28, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 52/181 (28%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ D+E+TGLD E+ + + E + V DP A +NG Sbjct: 25 PFVLFDMESTGLDVQIGHRICEMAAMRIQGREIIDRCEF-LVNPQREIDPAAFAVNGISA 83 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + W +V N FD + + +P V Sbjct: 84 EMVANA----PSFGEIWPKVNKLFHEAVLVAHNAYFDIGFLTSELSRIDLPPLETPV--- 136 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + A + L ++A LG H A+ D A F+ L Sbjct: 137 -------IDTLALARR-YITARRYNLTSLATNLG-EKAPSHRAMSDVVALRPVFEHLLDI 187 Query: 183 A 183 Sbjct: 188 L 188 >UniRef50_D2QAZ6 DnaQ DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium RepID=D2QAZ6_9BIFI Length = 317 Score = 125 bits (314), Expect = 7e-28, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 61/183 (33%), Gaps = 19/183 (10%) Query: 1 MAKQ-LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M + VVD ETTGL+ +E+GL++V L + A I+ Sbjct: 1 MNSKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVHRDI--GAQWIH 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 E + + E++D L G F N AFDS + + Sbjct: 59 HIS----AVELIHAPEFEGIARELRDLLAGRVFVAHNVAFDSKFLLSEYRRLGTDIP--- 111 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 V H + + + + L G+ + HSA+ DA ATA Sbjct: 112 ---VNSHTMLCTMKLSRSLIGVG-----SLADCCREFGIDNEDAHSALSDAHATALLLGR 163 Query: 179 LRH 181 L Sbjct: 164 LMD 166 >UniRef50_A9BFB1 DNA polymerase III, epsilon subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BFB1_PETMO Length = 187 Score = 125 bits (314), Expect = 8e-28, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 56/180 (31%), Gaps = 17/180 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 + +D ETTGL+ + +E+ + + + + H V + + + Sbjct: 8 FLALDFETTGLNPELGDRIIEIAAIPIYDKKINFKYAFHTLVNPNIFIPGEVSKFHKLNN 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + ++++ + N D + M + Sbjct: 68 QDISNA----PSLSEVFPRFKEYIDDSIIVSHNVKMDLRFLDIAAKESGM-------FSI 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ + L L+ ++++ + + H A DA +TA F Sbjct: 117 DNYYIDTLEISK----YYFDKGPYNLEFLSKKFNLGIKQFHRAWDDALSTAKLFQKYIKL 172 >UniRef50_A6CHW6 DNA polymerase III, alpha subunit n=1 Tax=Bacillus sp. SG-1 RepID=A6CHW6_9BACI Length = 245 Score = 125 bits (314), Expect = 8e-28, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 17/179 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYY 61 + DLETTG + V +G + + + L + L + G Sbjct: 62 TFTIFDLETTGFFPEIGDEIVSIGAIKMQGNKILDQKTFYEVINPLQNVSLETKRFTGLR 121 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + V + ++ +G +FD + ++ + +P Sbjct: 122 RTD----FIKAKTLPVGLKDFLEFCKGTILVAHPASFDINFLQKRIRKWDLPSFEPEY-- 175 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +YA K ++ + LD + ++ + RH A+ DA TA F L Sbjct: 176 --------IDSYALAKELLNEQKCY-LDDLVKKFQISEKTRHHALNDAIMTAEVFQELL 225 >UniRef50_C6RD51 Mature parasite-infected erythrocyte surface antigen n=2 Tax=Campylobacter RepID=C6RD51_9PROT Length = 311 Score = 125 bits (314), Expect = 8e-28, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 22/183 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 VVD+ET+G ++ +E+G L + GE + F + E+ G Sbjct: 73 FCVVDIETSG-GINSGQIIEIGALKLQNGEIIGKFETFVYAP---YVPENISELTGITAE 128 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A + + +L + F N FD ++ G + Sbjct: 129 HLKNA----PSLAFVMEQFKVFLGQSVFVAHNVRFDYGFISATLEALGY-------GELL 177 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LRHT 182 + +L + + I + GL + E LG+ H A+ DA A A F L+ Sbjct: 178 NRKLCTID---LARRTI-ASPKYGLGTLKEILGIDNT-HHRALSDAIAAAEIFKYSLQKL 232 Query: 183 AAA 185 + Sbjct: 233 PSE 235 >UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WPW0_EGGLE Length = 966 Score = 125 bits (314), Expect = 8e-28, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 18/181 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++V+D ETTG ++ ++ ++ GE + + V + ++R Sbjct: 10 VVVLDTETTGFSFNHDELTQIAAARMEQGEIVEWFI-TFVNPGKPIPEDVAHLTDIHDRD 68 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + L A A ++ +++ N FD T R Y + + Sbjct: 69 VADAPLP----ADALAKLVEFIGDAKVVAHNAEFDRTFTTRHPSGYPLLENTW------- 117 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + + ++ + + L + G P+ H A D AT F +L A Sbjct: 118 -----IDSLDLARIALPRMKSHRLLDLVRAFGAPLS-THRADADVEATCAIFRILLAGVA 171 Query: 185 A 185 A Sbjct: 172 A 172 >UniRef50_D2L4P4 DNA polymerase III, epsilon subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4P4_9DELT Length = 249 Score = 125 bits (314), Expect = 9e-28, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 56/189 (29%), Gaps = 10/189 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 + VD E TG D V +G + + L V AA A I+ Sbjct: 48 DFVAVDTELTGFDPRRHALVSIGAVRLRGLSILPGEAFYTLVRPPAAVPRDATLIHRLTG 107 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 L A A D+L G + D + + + + Sbjct: 108 AALADA----PPVAEALAAFLDFLGPAVVVGHHVDLDMGFLNAAARRHMGGELAAPCIDT 163 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTEL--EGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 R+ A A G D E L A+ R G+P H A DA ATA+ F Sbjct: 164 LRLAMALEEKRLAVAGGAGGPDGFERVDYRLPALCRRYGLPGFAAHDARADALATAYLFL 223 Query: 178 MLRHTAAAH 186 L Sbjct: 224 YLARHCGRA 232 >UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K987_THASP Length = 482 Score = 125 bits (314), Expect = 9e-28, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 54/185 (29%), Gaps = 20/185 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +L +D+E+TG E+ +L V+ GE + V P E+ G Sbjct: 3 LPSRLAFIDVESTGAHPVRDRITEIAILRVEDGEVVAR-WESLVAPGQPIPPLIEEVTGI 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + V V L G F + FD + F Sbjct: 62 SDAMVAEA----PAFEVLADTVAALLEGCVFVAHSARFDYGFIRNAFTRIGREFEAPV-- 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + GLDA+ ER G+ RH A+GD Sbjct: 116 ---------LCTVKLSRALYPEHHRHGLDALIERHGLVCAARHRAMGDV----EVLWQFV 162 Query: 181 HTAAA 185 A Sbjct: 163 RGLEA 167 >UniRef50_C4DV08 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DV08_9ACTO Length = 410 Score = 124 bits (313), Expect = 9e-28, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 54/175 (30%), Gaps = 16/175 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V D ETTG+ +E+ ++ D S+ + P+ I+G Sbjct: 2 YAVFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTLLNPDRDLGPQ--HIHGIK-- 57 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 R+ + + G++ L G T N FD ++ + + V Sbjct: 58 --ARQVIDAPKFGDIAGQLIQMLSGRTLVAHNLPFDLRFLSAEFERLGHQLTYNHHLGVC 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L + GV + HSA+ DA ATA Sbjct: 116 TMNWSTT---------FLEGASRSLPECCKAAGVQLTGWHSALSDAEATAALLKH 161 >UniRef50_Q6NGF2 Putative DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium diphtheriae RepID=Q6NGF2_CORDI Length = 448 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA--AADPKAMEINGYY 61 + VD+ETT + D ++G V G + + + D + I+G Sbjct: 104 DFVAVDVETT--NSDWGSICQIGAAKVRDGHVVETKEWLCTPPGDLNSFDEANIAIHGIT 161 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + T A + + D+ A N FD T R + G Sbjct: 162 ADMVA----TAPSFAECYDQFADFAGDLPLAAHNAQFDMTAFLRATQAADIRLRTTNFG- 216 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + AA + P L V++ L V + N H+A DA A A L Sbjct: 217 ---------CSLAAARAAHLPIANHKLPTVSQHLHVELRNHHNACADAEACAGILIALTQ 267 Query: 182 TA 183 Sbjct: 268 RL 269 >UniRef50_D2PY06 Exonuclease RNase T and DNA polymerase III n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PY06_9ACTO Length = 415 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 54/173 (31%), Gaps = 16/173 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+D ETTGL +E+ ++ +D + P+ I+G Sbjct: 2 YAVIDTETTGLLPGHRHRVIEIAVVLLDQHGRFEHEWVTLLNPQRDLGPQ--HIHGI--- 56 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + L + + L G G N FD + + +T Sbjct: 57 -LTADVLAAPEFVDVARHLGALLAGRMVVGHNVEFDLGFLRAEFARLGHVVPLITERS-- 113 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + A ++ L A G+ + HSA+ D ATA F Sbjct: 114 ------MCTMALAGYLYPGSKR-TLGACCAAAGISLQGWHSALADTRATAELF 159 >UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG63_THET1 Length = 960 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 22/178 (12%) Query: 1 MAKQ--LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 MA + + +DLE TG D + +++G + L V + + Sbjct: 1 MAAERIFVALDLEMTGHDPEQDEIIQIGAVKFTQTRVLGR-WGTLVRPKVKLPFRIARLT 59 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G L + +++ ++ + G + D + +A+Q Sbjct: 60 GINPNDLNKA----PVFDAVKDKLRSFVGDHPIVGHSIGNDLSFLAKQ------------ 103 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + L + L + L VA LGV V N H A+ DA T F Sbjct: 104 GLALDNPSLDT---WELAMLLMPSLNAYSLQGVASALGVSVDNHHDALADAEITRQVF 158 >UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD Length = 1043 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + K ++V+D ETTG+ + ++ + G+ + + V + + Sbjct: 33 LDKDIVVIDTETTGISFVRDELTQIAAARMVEGKIVDWFV-TFVNPGRPIPEEISHLTSI 91 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 YE + A ++ D++ + N AFD + P T Sbjct: 92 YESDVADA----PSPEEAVFQLVDFVGESCLVAHNAAFDKHFCTK----------PATGE 137 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + H+ D + ++ + + L + P+ H A D A F +L Sbjct: 138 SLTHNIWID--SLDLARIALPRLKSHRLLDLVRAFDAPLS-THRADADVEALCAVFRILL 194 >UniRef50_C0N4N3 Exonuclease superfamily n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N4N3_9GAMM Length = 240 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 48/184 (26%), Gaps = 8/184 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYE 62 + +D ETTGLD V GL+ H V + +++ + Sbjct: 49 PFVALDFETTGLDPRYNEIVSFGLVPFTLRGIRPSDGHYQVVKPNCVLSEESIAFHRITH 108 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP---FSPLTV 119 + T E+ L G + + F + Sbjct: 109 SQVD----TAPPLEKVLDELLGRLSGCIVVVHYQQIERPFLDLACRKLWGEHCLFPLIDT 164 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + K LD R G+P + H A DA ATA F Sbjct: 165 MAIEARWQRSGWKHRLKKTLGLQPVSIRLDDSRRRYGLPSYSAHHAKVDAMATAELFLAQ 224 Query: 180 RHTA 183 Sbjct: 225 VARH 228 >UniRef50_A8ES54 DNA polymerase III, epsilon subunit n=4 Tax=Epsilonproteobacteria RepID=A8ES54_ARCB4 Length = 203 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 74/183 (40%), Gaps = 16/183 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 + + +D ETTGL+ + +G + + + L I ++ + ++++++ Sbjct: 29 NEYVSLDCETTGLNPKKDEILSIGAVLIKDNKILMRKTFNIFLKPSKDINIESIKVHHLR 88 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLT 118 + L E + ++ D++ G FD I+++ Y +P +P+ Sbjct: 89 QIDLNDAL--EPEIG--IYQLLDFIGSRPIVGYYIEFDMAIISKYTKKYLGIKLPNTPIE 144 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 V +++ + Y D + + L +PV+ +H A+ DA T+ F Sbjct: 145 VSSIYYDSRKSTSNY--------GFIDLKFDTIMKNLNIPVLGKHDALNDAIMTSMIFLK 196 Query: 179 LRH 181 L+ Sbjct: 197 LKQ 199 >UniRef50_A7HHL1 Exonuclease RNase T and DNA polymerase III n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HHL1_ANADF Length = 238 Score = 124 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 17/191 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA--ADPKAMEING 59 V+D E TGLD + +G + + G + V + + + + I+G Sbjct: 44 TMTFTVLDCEMTGLDPARDEILSIGAVRIRNGRIVMAERFYQVFKPTEAVSPKEVILIHG 103 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + R A + ++ + G + D + + Sbjct: 104 LGPDEVSRGL----PLGDALERLLAFIGDSVVIGHFTSVDLSFLNAALA-------SRKE 152 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + L YA + P L+ + +G+P H A DA T Sbjct: 153 RSLKNPALDTRLLYAWWRRRTSPAGQAAADANLEDIVIEMGLPRYPAHHAFYDALTTGMV 212 Query: 176 FDMLRHTAAAH 186 F L A Sbjct: 213 FLKLLGDFEAS 223 >UniRef50_Q7VGH4 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7VGH4_HELHP Length = 266 Score = 124 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 19/178 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 L+ VD+ET G +E+G L V GE + F ++ + ++ G Sbjct: 69 QKGNLVFVDIETNGAKPQQCQIIEIGALKVKGGEIIDKFESYVYAD---EVPENITQLTG 125 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + GE + +L + F N FD V + Sbjct: 126 ICQADIAYA----PSIKEVLGEFRAFLGTDVFVAHNVNFDYGFVDYHLRQCGL------- 174 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + +L + L+ L + E LG+ H A DA + F+ Sbjct: 175 FGLLNPKLCTIELAKKTILS----PRYALGFLNEFLGIRTAVTHRAYADALTSFRVFE 228 >UniRef50_A6WGD9 DNA polymerase III, epsilon subunit n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WGD9_KINRD Length = 224 Score = 124 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 56/186 (30%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + V+D+ETTGL + V++ + +D ++ V+ P ++G Sbjct: 25 RYAVLDVETTGLRPETGDRVVQIAVTLLDARGTVERSWSSLVDPHRDPGP--THVHGITA 82 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L A V L G F N FD V+ + + Sbjct: 83 ERLAGA----PTFAQLAPTVAGLLDGRVFVAHNARFDWKFVSAEMRAAGVHLPVRQ---- 134 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD-MLRH 181 L + + P E L +AE GV + H A D L Sbjct: 135 ------RLCTWELAQRLDLPVENLKLATLAEHWGVRQLRPHDAEDDTRVLVEVLREELLD 188 Query: 182 TAAAHL 187 A L Sbjct: 189 AAGQRL 194 >UniRef50_B4WSD0 Exonuclease family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSD0_9SYNE Length = 273 Score = 124 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 52/180 (28%), Gaps = 13/180 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A L VVD+ETTG A +EV +L+ + L + I G Sbjct: 28 ASPLTVVDVETTGALGHNARVIEVSVLHASLADGLEHQESYLINPQVKIPEYITRITGIT 87 Query: 62 ERGLYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W + Q L F N FD + + + + F Sbjct: 88 PEMV----YSSPPPEEIWPKCQPLLEGDRVFTAHNLDFDYSFLRTEYKRLGIRF------ 137 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L L ++ + L + + + H A D A L Sbjct: 138 --YKPPLQKLCTVILSRMLLADLPSRSLPNLIKHFNFDIDTSHRAEADTKACWLLAKTLL 195 >UniRef50_A6QC85 DNA polymerase III, epsilon subunit n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QC85_SULNB Length = 272 Score = 124 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 17/178 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 ++ V+D+ET G T+ +E+G + V+ GE + T + A +I G Sbjct: 70 QEQRYCVIDIETNGSKPGTSQVIEIGAVMVEKGEIVDR--LETFVECAFLPEYITKITGI 127 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A +++ ++ F N FD + + + + G Sbjct: 128 EPIDLKDA----PTRRAALTQLRQFMGDAVFVAHNANFDYSFLTASFERFGL-------G 176 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + +L + K +E GL + + LG+ H A DA + Sbjct: 177 GIGNPKLCTID---LAKRTF-ESERYGLAYLIDFLGIETATHHRAYSDALCAEKVMEK 230 >UniRef50_B6IRC5 3'-5' exonuclease n=2 Tax=Alphaproteobacteria RepID=B6IRC5_RHOCS Length = 212 Score = 124 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 17/177 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 L+ +D ET + A +GL V+ G + ++ P + I+G Sbjct: 4 PPPLLAIDFET--ANEQRASACSIGLCRVENGRVVRTAEYLIRPPELRFTPFTIAIHGIR 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + W ++ L G N +FD +++ TY + Sbjct: 62 PEDV----VDAPEFPDIWDAMRPELEGAVLLAHNASFDMSVLRAMLGTYGLAVPDHGY-- 115 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L A + E L+ +A + G+ + H A DA A A Sbjct: 116 --------LCTLVAARRAWPDLEKHRLNHLARQFGIELE-HHRAGSDARACAAIALR 163 >UniRef50_C0ECE2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECE2_9CLOT Length = 865 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 13/178 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K ++V D+E+TG D + +++ + +D + + + ++ ++ + + Sbjct: 497 KNVVVFDVESTGTDTSSDEIIQIAAVRIDETGRVLR-SFEQLLHPSKPVGQSEAVHHFSD 555 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L E ++RG G N FD TI+A + +P + Sbjct: 556 ALLAERGGEPP---QVLAEFCSFVRGAVVVGHNVGFDLTILASELSRLGLPPAEYEE--- 609 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L+ +++ L V + H A+ D AT L Sbjct: 610 ------YYDTLDLARRFYPDLPNHKLETLSKLLDTEVKSSHDAMDDILATKDVLLHLT 661 >UniRef50_C3XF27 DNA polymerase III subunit epsilon n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XF27_9HELI Length = 268 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 17/180 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +L VD+ETT +E+G + GE L T+ +++ G Sbjct: 77 EAKLCFVDIETTSASVKNGQIIEIGAIIAQNGEILD--TFDTLVYSPFVPEDIIDLTGID 134 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + +L + F N +FD +A Y MP Sbjct: 135 SYMLEDA----PRLEQVLKQFRAFLGDSVFVAHNVSFDYNFIAESLHEYDMPP------- 183 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 +++ RL L + ++ L + + LG+ H A DA +++ Sbjct: 184 LFNPRLCTLDLSRRTIV----SKKYALAYLNDMLGINTAQAHRAYADALTAFRLYEICMQ 239 >UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2F3_PELTS Length = 937 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 19/164 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K+++V DLETTGLD + +E+GL+ + + + H V K + G Sbjct: 1 MIKEIVVCDLETTGLDPLSDRIIEIGLVRLKDLKIVDI-YHTMVNPGRPLPLKIKNLTGL 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + +V ++ AG N FD +A + F Sbjct: 60 DDSDLA----SAPAFSGVREKVLGFIGDAPIAGHNIRFDMGFLAAAG---GISFKNPAYD 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 +L + L+++ ERL V RH Sbjct: 113 -----------TVELARLAVPGLPTYRLESLCERLNVEAAARHR 145 >UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRZ3_METLZ Length = 228 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 53/180 (29%), Gaps = 13/180 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++VD ETTGL+ E+ + D G +I++ E+ G Sbjct: 1 MLIVDTETTGLNPKIDRITELAAIKFDKYGNKSVMDEYISLPNDICYPENVQEMTGITPE 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + E++ A + + N FD + + F Sbjct: 61 ILELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRHRYVFPNG------ 114 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-VVNRHSAIGDAAATAFCFDMLRHT 182 + D + L G+ V N H AI D A FD + Sbjct: 115 -WGVIDTLTVFRDRKPQP----HRLSDAISYYGLDGVKNSHRAIDDVVALCAVFDAMCQE 169 >UniRef50_Q6Q234 Putative uncharacterized protein n=1 Tax=uncultured soil bacterium RepID=Q6Q234_9BACT Length = 195 Score = 123 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 11/185 (5%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +V+D ETTGL T V++G+++ L V I+G Sbjct: 22 MHGDFVVLDTETTGLGP-TDEVVQIGIIDSKGRTVLN----TMVRPTRPVPSVVTRIHGL 76 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + + + L G T N FD ++ + Y +P Sbjct: 77 TNEKLAEAS----PFSDLYVSLSSILAGVTVIAYNMDFDWRMLVQSAGLYGLPAFRTGDR 132 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + A K L +PVV H A+ DA T + Sbjct: 133 QCAMKAYAQGHGMFDLKRRTYAY--HKLGEACRHQKIPVVQAHDALSDARMTLALVRKMA 190 Query: 181 HTAAA 185 +A Sbjct: 191 EFHSA 195 >UniRef50_A4U4S6 DNA polymerase III epsilon chain-like protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U4S6_9PROT Length = 619 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 65/185 (35%), Gaps = 18/185 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHIT-VEQLAAADPKAMEINGYY 61 + D ETTGL D ++VG + + G L ++ ++M +G Sbjct: 429 TFVAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDPGIPIPAQSMAYHGIS 488 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + AV + + + AG N AFD + + + Sbjct: 489 NDMVKGK----PPLAVVLPQFAAFAGASALAGHNVAFDLKFLHAAQGETGIAL------- 537 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A +DP L+AVA RLGVP + SA+ DA TA L Sbjct: 538 --RQPVLDTMILA---ALLDPGYDLSLEAVAGRLGVPPLPHRSALSDALVTAEILARLIA 592 Query: 182 TAAAH 186 A Sbjct: 593 PLEAR 597 >UniRef50_A5CX11 DNA polymerase III epsilon subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A5CX11_VESOH Length = 223 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 64/182 (35%), Gaps = 15/182 (8%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++LIV+D ETTG+ + +E+G + + + + Q ++ I+G Sbjct: 2 ERLIVLDTETTGIKPSEGHRIIEIGCIEIIDRQITKNNKYHEYIQPNRNVGDSVRIHGIT 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L ++ + E +++ T N FD + + + Sbjct: 62 DKFLTKK----PKFKEVVEEFLAYIKETTLIIHNAPFDLGFLNHELKLIGINERIEDKCT 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + + + K T L LD++ R + R H A+ D A + + Sbjct: 118 I-------IDSLELSKQQRPGT-LHNLDSLCRRFKIDSSARTVHGALLDVQILAQVYLAM 169 Query: 180 RH 181 Sbjct: 170 TG 171 >UniRef50_A6Q1S7 DNA polymerase III, epsilon subunit n=2 Tax=Epsilonproteobacteria RepID=A6Q1S7_NITSB Length = 276 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 19/179 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 ++ +VVD+ET G + + +E+G + + F I E ++ G Sbjct: 66 QEQEFVVVDIETNGSKPEFSQVIEIGAIKFKGNTIIDRFESFIYAE---DVPEYISKLTG 122 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L +++L+ F N FD ++ + + Sbjct: 123 ILQEDLENA----PSQKEVLLSFKEFLQDAVFVAHNVRFDYNFISSKLEQLGLEKLANRK 178 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + + I +E GL+ + E LG+ H A DA M Sbjct: 179 ----------LCSIDLARKTI-ESERYGLEFLNETLGINTAVSHRAYADALTAYKILQM 226 >UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8I6_9BACT Length = 197 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 54/184 (29%), Gaps = 16/184 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 L++ DLETTG +++ + + G V E+ G + Sbjct: 3 LVIFDLETTGFSPRWNDIIQIAAVRLVDGRISDETFSTYVSPRRPVPDHITELTGITDAD 62 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRVW 123 + T A+ + T N FD +A + +P P+ Sbjct: 63 VADAPETSDALR-AFARFVGDVGPTTLVAHNGHRFDMRFIAESCTLHGLPMRPIRF---- 117 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV----VNRHSAIGDAAATAFCFDML 179 + + K L LD + ERLG+ RH A D A + Sbjct: 118 ------IDSIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARADVHLLANAVRRM 171 Query: 180 RHTA 183 Sbjct: 172 IQNL 175 >UniRef50_P96171 DNA for Na+/glucose symporter, n=1 Tax=Vibrio parahaemolyticus RepID=P96171_VIBPA Length = 234 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 62/174 (35%), Gaps = 10/174 (5%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ETTG + + + +G + + L H+ + ++++++ Sbjct: 49 LVLDFETTGFNPEVDRVISIGWVEIRNSNIRLNSARHVFINHAIDICHESVKVHHIRPET 108 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L+ ++EQ A+ ++ D + G + + + ++ Sbjct: 109 LHVSGISEQ---AAFTQLLDVIAGKILVAHGCIMEQRFLEQYIKM------KYQNLKLPL 159 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L L L ++ + L +P H+A+ DA ATA + Sbjct: 160 IWLDTLKIEQYRTQLRPTRSDWRLSSIRKELNLPTYQAHNALNDAIATAELYLA 213 >UniRef50_D0RQR6 DNA polymerase III PolC-type (PolIII) n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQR6_9RICK Length = 223 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 16/186 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYY 61 V D ETTGL+Y+ + V + V + + + P+ +I+ Sbjct: 26 TFSVFDTETTGLNYNSGDKIISVSGVKVQNFQIDTEGKLDEFCDPMVEITPENEQIHHIS 85 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + + + + + + + N FD + + + Sbjct: 86 NRMVKGK----PNIYDLESKFRGFFKRSVLVAHNVKFDCNFLISNLSHTKLESRIREAVK 141 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDML 179 + + L A+ + L + + RHS++GD+ TA F L Sbjct: 142 LD--------TVLYSAGVYPDLKSYELSALCDELNITHHDQLRHSSLGDSIITARLFIHL 193 Query: 180 RHTAAA 185 + A Sbjct: 194 LKKSKA 199 >UniRef50_Q4K5K3 Exonuclease n=3 Tax=Gammaproteobacteria RepID=Q4K5K3_PSEF5 Length = 203 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 51/183 (27%), Gaps = 18/183 (9%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++ V+D ETTG+ + E+ ++ ++ G + + ++ G Sbjct: 2 ERIAVIDFETTGISPSSSCRATEIAVVILEQGRIVERYQSLM-NAGVRVPAFIEQLTGIS 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + EV +++ N AFD + Sbjct: 61 NAMLR----SAPPAEQVMNEVNEFVGITPLLAHNAAFDQKFWDFELGRIKRTRLQNFA-- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLR 180 + + + L + G+P H A+ DA A L Sbjct: 115 ---------CSLLLARRLMPAAPNHKLGTLTSFAGLPHTGQAHRAMADAEMAANLVAHLA 165 Query: 181 HTA 183 Sbjct: 166 GEL 168 >UniRef50_Q1JYJ5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JYJ5_DESAC Length = 193 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 14/180 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VDLETTGLD T + + + G V+ + P++++ +G + Sbjct: 6 FCIVDLETTGLDLTTDTIINAAAVKIKKGRITKIYE-TYVKPPTSIPPESIQFHGITDDM 64 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E ++ + G + FD ++ R Sbjct: 65 LVDK----PSIGEVLPEFMTFIGDSMITGHHINFDLKMLDRHLREN---------YDCNL 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L KL ++ LD + + RH A+GD+ ATA F + H + Sbjct: 112 EGAPWLDTMLLHKLVMENNTSTQLDDLLNVYCIDCEQRHRALGDSIATAKVFLRILHELS 171 >UniRef50_A6D4K1 DNA polymerase III subunit epsilon n=1 Tax=Vibrio shilonii AK1 RepID=A6D4K1_9VIBR Length = 176 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 16/178 (8%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYERGLY 66 +D ETT LD A V + + + P + + + +++I+ L Sbjct: 1 MDCETTSLDPSVAEIVTIAATKIIDNRIITSDPFEVRLSAPKSLGEDSVKIHHITHDELK 60 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTVGRVW 123 A + +++ G + +D I+ R + +P + V +++ Sbjct: 61 HGI----SEKQAMSALLNFIGNRPLVGYHIRYDKKILDRAAKKHLGFPLPNELIEVSQIY 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + KL + L+A+ L +P ++H A+ DA A A + L Sbjct: 117 ND--------KLLKLLPNGYFDLSLEAICRHLQIPNYHKHDALEDAKAAAMVYLKLTR 166 >UniRef50_C9ZG17 Putative DNA polymerase III, epsilon chain (EC 2.7.7.7) n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZG17_STRSW Length = 613 Score = 123 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 48/174 (27%), Gaps = 16/174 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VD+ET+GL + + +L +D + + P + ++G Sbjct: 18 DWALVDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTLLNPDCDPGP--VHVHGLTAD 75 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L +V L N FD +A + R W Sbjct: 76 RLAGA----PAFEEIAPQVGALLSSRVLVAHNAQFDYDFLAHEFAQ----------VRSW 121 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L A +L T L +A GV H A D + Sbjct: 122 APVSRRLCTLALNRLVGPATPDLKLGTLAAHYGVRQEKAHDAQDDVRVLSGILR 175 >UniRef50_Q2B6U9 Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6U9_9BACI Length = 243 Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 16/174 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYYER 63 IV+D+ETTG D + +G + ++ G ++ + P+ ++ G Sbjct: 60 IVMDIETTGFFPDQGDEIISIGAVKIENGTINEDKKFYSLIRYEKTLSPQIEQLTGLRGS 119 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E + T + + + + + Sbjct: 120 QLKEA----PPLPEVLIEFFKFCEARTIIAHHARHEKSFLQNASWKH--------FKAPL 167 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 HR+ D + ++ L+ L+ + G+PV+ RH A+ DA A + Sbjct: 168 KHRIIDTSFL--YRIAEPELNLQRLEDLCSHNGIPVMERHHALEDARLAAELWC 219 >UniRef50_B1GYV2 DNA polymerase III epsilon subunit n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYV2_UNCTG Length = 198 Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 18/172 (10%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 + L+ +D+ETTGLD + A VE+ +L V G + V + +I+ Sbjct: 14 LPDNLVFLDIETTGLDPEKGANIVEIAMLKVCGGIEERYES--LVNPGLPIPSECSKIHA 71 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 Y+ + G V ++ + N FD V R+ +P + Sbjct: 72 IYDDMIKN----SPSFDEIAGNVFSFIGHSVVVCHNAPFDLLFVYRELYLAGVPVKNI-- 125 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 R D A + D L +A+ +G+ RH A+ D Sbjct: 126 ------RYIDTLKLARQYFSFD---SNKLGNIADAIGIEAELRHRAMADVLT 168 >UniRef50_C0Z5S3 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5S3_BREBN Length = 235 Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 16/177 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYY 61 +++VVDLETTG D + +G + + L V A P + G Sbjct: 52 EVVVVDLETTGFYPDHGDAIISMGAVAMRGEHLLLGDSFYTLVNPGRAIPPHIRSLTGIT 111 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A ++ + + + T R Sbjct: 112 DDMVADA----PPLLEALSRFFQYVGDRPLVAHHSRHEREFLRSGLWK--------TSRR 159 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + HR+ D +L +P LDA+ +P+ RH A DA A + Sbjct: 160 PFTHRMLDTMLL--IRLLNNPIGNGSLDALCAAHDIPISRRHHAYCDALAAGTLWAK 214 >UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIP6_9BACT Length = 261 Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 54/179 (30%), Gaps = 19/179 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + ++ DLETTGL+ +E+ + V V +A EI G Sbjct: 5 LQRPIVFFDLETTGLNPTEDRIIEICCIKVHPDGKRDIKTR-RVNPEKPISSEASEITGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + E + + G +G N FD ++ + + F Sbjct: 64 TDEDVKDE----PTFKQMAKGIYKFFEGCDISGYNIMRFDLRVLTEEFKRAGISFDASAH 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFD 177 V R+ E L+A + H+A D AT + Sbjct: 120 DLVDVQRI------------FHKKEPRTLEAALRFYCKKDLEGAHAAENDVIATIDVLE 166 >UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class) RepID=B9KXZ3_THERP Length = 982 Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 20/185 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + +D+E TG+D + +EV + E L V+ + G Sbjct: 1 MPRIYVALDIEATGMDPERDEIIEVAAIKFREEEVLER-FETLVQPRRPVPLAVASLTGL 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R L R ++ ++R G +P +D +++ + Sbjct: 60 TMRDLRRA----PSFQQIAPRLRQFVRNYPIVGQSPDYDLQMLSAH--GLELRNPVYDTF 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+ + + L +A RLG+ V +H A+ D T F L Sbjct: 114 RL-------------ATILLPDLPAYSLAGIAARLGISVAQQHRAMADVETTMAVFLGLC 160 Query: 181 HTAAA 185 A Sbjct: 161 DLLRA 165 >UniRef50_B2KEE3 DNA polymerase III, epsilon subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEE3_ELUMP Length = 201 Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 51/179 (28%), Gaps = 19/179 (10%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 + +D ETTGL D A E+ ++ G + + + + + I+G Sbjct: 12 KFAFLDTETTGLSPYDGARLCEIAVI--TNGALIAKSEYGTIINPRCVISQEVINIHGIT 69 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + L + N FD +A + + + Sbjct: 70 NEMAAQA----PYFEDIAPLLIGLLTDSVIVCHNADFDIPFLAAEFARCGLRMPQTVI-- 123 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + N + L + LG+ H A+ DA T F Sbjct: 124 --------LDTLKFARKN-GNFKKNNLGFIVSELGLSNEGWHRAMADAKMTEKVFYHFL 173 >UniRef50_B4RBF9 DNA polymerase III epsilon chain n=3 Tax=Alphaproteobacteria RepID=B4RBF9_PHEZH Length = 234 Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 67/190 (35%), Gaps = 16/190 (8%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG D VE+ L ++ H ++ +A +++G Sbjct: 1 MARE-IVLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDPCRDMPAEAEKVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E D++ N AFD V + + Sbjct: 60 LSTAFLRGKPKFEAP--EIVEAFLDFVADAPIVAHNAAFDRAFVNYELGLC-------SR 110 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + HR D A A + P LDA+ +R + + R H A+ D A + Sbjct: 111 AELPDHRWIDTLALAKQRF---PGMHNSLDALCKRFKISLAEREKHGALIDTKLLAAVYL 167 Query: 178 MLRHTAAAHL 187 LR L Sbjct: 168 ELRGGRERRL 177 >UniRef50_C2MC99 Exonuclease n=3 Tax=Bacteroidales RepID=C2MC99_9PORP Length = 189 Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 52/178 (29%), Gaps = 21/178 (11%) Query: 4 QLIVVDLET-TGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 I +D ET TG EVG+ V GE + + M+ +G Sbjct: 5 DFIAIDFETATG---QRTSICEVGICLVRNGEIAETRSWLVQPEGNRYSYWNMQCHGIRP 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWL--RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R A W E+ + G N FD + + + Y + L Sbjct: 62 EDTKRA----PSFAEVWQEIAEQYIGEGALLVAHNVPFDRSCLEQAAQLYELTLPELQWD 117 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + D L + E+L +P H A DA A + Sbjct: 118 ----------CSLRRARQIYD-YGCHTLAYLCEQLSIPEGRHHRAGDDAEMCARLYLR 164 >UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Campylobacter RepID=B9KCR0_CAMLR Length = 254 Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 21/179 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVD+E+TG + +E+G + + E F + VE + E+ G Sbjct: 72 FCVVDIESTG-GIKSGQILEIGAVKIQNYKEIDRFESFVKVE---SIPENITELTGISLD 127 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + +L+ + F N FD +++ G + Sbjct: 128 MVENA----PSLKTVLNNFKLFLKDSIFVAHNVRFDYHFISKAMYEN-------DFGVLL 176 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + RL + + GLDA+ E L + H A+ DA A + Sbjct: 177 NRRLCTIDLAKKCI----ESPKYGLDALKEFLCIE-SKHHRALSDALAASEILKYCLKK 230 >UniRef50_A3ZH56 DNA polymerase III n=1 Tax=Campylobacter jejuni subsp. jejuni 84-25 RepID=A3ZH56_CAMJE Length = 326 Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 17/183 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K +V+DLETTG D +E+ L + E + + +++ E G Sbjct: 31 PKSYVVIDLETTGFDPKCNEILEIVALRYENNEKI--AEFSKLIKVSFLPSFITEFTGIN 88 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + + E D+L+ + N FD + + Y Sbjct: 89 EDMIKNCN----DISQTLKEFDDFLKSGDILVAHNAHFDINFLYDNFMCYLNKPFSFDF- 143 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + KL L + + + N H D T C L+ Sbjct: 144 ---------VDTMRLSKLINQELAHHRLKDLCNQYNICYENAHRGEKDCELTHLCLMELK 194 Query: 181 HTA 183 TA Sbjct: 195 KTA 197 >UniRef50_O29290 DNA polymerase III, subunit epsilon (DnaQ) n=1 Tax=Archaeoglobus fulgidus RepID=O29290_ARCFU Length = 205 Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 11/180 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +DLETTGL+ + +G + + L + + + ++M+ +G Sbjct: 10 FLSIDLETTGLNQKKDEIIAIGAVPIIGTRILAGESYYRLLRPEKFKHESMKFHGLDPAR 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L T + EV D LRG G D + R + Sbjct: 70 LK----TAHDFSEIAEEVADLLRGKVLVGYAIELDYGFLKRALKREGYKVENKRID---- 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD-MLRHTA 183 + D L P LD +A++ V V RH+A+ DA TA F L Sbjct: 122 --VIDFEKAVCYILGERPVGEMTLDNLAKKYRVEVSYRHNALADAFITAQIFQVQLLKIL 179 >UniRef50_D0RQQ0 DNA polymerase III, epsilon subunit n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQQ0_9RICK Length = 223 Score = 122 bits (307), Expect = 5e-27, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 59/184 (32%), Gaps = 16/184 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTGL +E+ + ++ H+ + A + +G + L Sbjct: 4 VLLDTETTGLSSVNDKIIEIACIEIEDHIPTGEKFHVFLNPEMEISQGAYDTHGISKEFL 63 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + ++ G N FD + ++ ++ Sbjct: 64 KNK----PKFNDVAKDFTKFIDGKKLVIHNAEFDLAFLNKELKEVGEK-------QISKD 112 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHTA 183 + D A K P LDA+ +R + R HSA+ D A + L Sbjct: 113 NIVDTLNIAREKF---PGAQNSLDALCKRFKIDNSRRQKHSALLDCELLAKVYIELFEKK 169 Query: 184 AAHL 187 Sbjct: 170 EPTF 173 >UniRef50_B5FC60 DNA polymerase III subunit epsilon n=58 Tax=Vibrionales RepID=B5FC60_VIBFM Length = 213 Score = 122 bits (307), Expect = 5e-27, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 76/180 (42%), Gaps = 10/180 (5%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYY 61 +L+ +D ETT L+ + A V + + + L H+ + + + +++I+ Sbjct: 28 DELVSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPPQSLNSDSIKIHQLR 87 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L+ + A ++ +++ G + +D I+ R + + P ++ Sbjct: 88 HQDLHHGLSEQ----QAMTQLLEFIGNRPIVGYHIRYDKKILDRACLRHFSHPLPNSLIE 143 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 V H + +L + ++A+++ LG+P RH A+ DA A A + L H Sbjct: 144 VSH-----IYHNKLERLLPNAYYDLSIEAISKHLGLPQTERHDALEDAIAAALIYVRLTH 198 >UniRef50_A9VZJ3 Exonuclease RNase T and DNA polymerase III n=7 Tax=Alphaproteobacteria RepID=A9VZJ3_METEP Length = 297 Score = 122 bits (307), Expect = 5e-27, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 17/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ +D ET + VGL ++ G + + P + ++G Sbjct: 2 KVVAIDFET--ANERRDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGILPA 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E L G N FD ++A + P Sbjct: 60 DVRDA----PTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPD------- 108 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +A + GL VA RLG+ H A DA A A H Sbjct: 109 ---MAGHCTLQIARRVFPDPAGHGLAKVAGRLGIRFE-HHDAGEDAFACAEIALAALHET 164 Query: 184 AAH 186 A Sbjct: 165 GAA 167 >UniRef50_B8G6F9 DNA polymerase III, epsilon subunit n=3 Tax=Chloroflexus RepID=B8G6F9_CHLAD Length = 280 Score = 122 bits (307), Expect = 5e-27, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 17/182 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 L+ D+ETTGLD + E+ +L + + + + DP+A ++NG Sbjct: 14 PLVFFDVETTGLDLQNGHRICELAMLRREHRQIT-GQINTLINPERELDPQASQVNGIRA 72 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + A +V + N FD + + + P Sbjct: 73 EDLQ----SAPRFAELTVQVVQLSQQAVRVAHNLPFDESFLNMELARAGYPPLTG----- 123 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + L A+A G+P H A+ D FD L Sbjct: 124 -----PALDTLELARRLGIRRGSLSLGALATSFGLP-TPTHRAMDDVLTLHALFDRLVAK 177 Query: 183 AA 184 A Sbjct: 178 LA 179 >UniRef50_Q0SVV0 Helicase/exonuclease n=12 Tax=Clostridium RepID=Q0SVV0_CLOPS Length = 870 Score = 122 bits (307), Expect = 6e-27, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 60/176 (34%), Gaps = 13/176 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +IV D+E+TG+D +++ + ++ + + + + ++G+ + Sbjct: 502 ENIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVV-DKFEKFLKNKKSVKDSYYVHGFSD 560 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L R +++ E ++ + + G N +D I+ + ++ Sbjct: 561 EMLQRIGEEKEK---VLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTF-- 615 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L Y + L+ +++ H A+ D AT Sbjct: 616 ----YDTLDIY---RRFYPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGELLVR 664 >UniRef50_UPI000196AD91 hypothetical protein CATMIT_00292 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AD91 Length = 297 Score = 122 bits (307), Expect = 6e-27, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 60/183 (32%), Gaps = 16/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M++++ + D+E L+ D +G++ ++ + + DP +++ Sbjct: 1 MSEKITIFDIE--ELNNDPVSVCSIGIVVLEDMKVKETFYSLIRPPKLTFDPYRYKVHKI 58 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L ++ W ++ + + + D + + + + Sbjct: 59 RPQDLKKQ----PTFPEIWPKISKYFENSIVISHDIQSDLNHLLAVFRRFRIRKPTCYLS 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 KL + GL ++ + V + N H+A+ D+ A A + Sbjct: 115 ----------CTLVLAKLFHPELQKYGLGSLCDFYSVDLENAHNALADSLACAELLKKMM 164 Query: 181 HTA 183 Sbjct: 165 EEH 167 >UniRef50_P47729 DNA polymerase III polC-type n=1 Tax=Mycoplasma pulmonis RepID=DPO3_MYCPU Length = 1435 Score = 122 bits (306), Expect = 6e-27, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 18/190 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++ +V D+ETTGL ++ G + G + ++ + D ++ G Sbjct: 400 LDQEYVVYDIETTGLSPMLNELIQFGASVIKNGRIIETHHFF-IKPKSKLDSFTTKLTGI 458 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + A ++ + N AFD + ++ + ++ F Sbjct: 459 TQEHLEKGY----ELQEALEKISSIFKARIMVAHNAAFDHNFLKQKFIDNNIEFEE---- 510 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCF-D 177 + + K+ L VA +L V H A D++ F Sbjct: 511 ------MISIDTLNLAKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFIL 564 Query: 178 MLRHTAAAHL 187 + H + Sbjct: 565 QMSHLKEKGI 574 >UniRef50_A5CE47 DNA polymerase III epsilon chain n=2 Tax=Orientia tsutsugamushi RepID=A5CE47_ORITB Length = 222 Score = 122 bits (306), Expect = 6e-27, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 18/189 (9%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTG-ESLYFVPHITVEQLAAADPKAMEINGY 60 ++ IV+D ET+GLD+ +E+G + +D+ + H + +A +++G Sbjct: 2 QRKIVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDISKEAYKVHGL 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + E ++ N FD + + + Sbjct: 62 SRDFLSDK----PKFREIVDEFLQFIDRAQLIMHNANFDMQFLNSELFR-------IRKS 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + + D A + P E LDA+ + + +R H A+ DA A + Sbjct: 111 AIPNTCVIDTLTLARKRF---PKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVYGR 167 Query: 179 LRHTAAAHL 187 + H L Sbjct: 168 MMHGMQVVL 176 >UniRef50_C6SPJ4 DNA polymerase III alpha subunit n=1 Tax=Streptococcus mutans NN2025 RepID=C6SPJ4_STRMN Length = 300 Score = 122 bits (306), Expect = 6e-27, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 66/182 (36%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ET GLD + +E+G + +D + F + +++ + ++ G + Sbjct: 130 PYVVIDIETDGLDENENSIIEIGAVKIDPSQLEEFNYLVKYDKI--LPKQISKLTGISQE 187 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L R+ V E +++ + G FD + ++ + P + Sbjct: 188 LLDRDGKD---LQVVLQEFLNFIGNHDLVGYGINFDIKFINKKLKELNQP--------LL 236 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +R+ DL YA + + L V + + H A+ D+ + Sbjct: 237 KNRVYDLMQYAKKEKLF--LDNYKLQTVLKAYEIEDEVPHRALHDSKLIYDLSTKMNKFL 294 Query: 184 AA 185 Sbjct: 295 KG 296 >UniRef50_B9L5N4 DNA polymerase III PolC-type n=1 Tax=Nautilia profundicola AmH RepID=B9L5N4_NAUPA Length = 255 Score = 122 bits (306), Expect = 7e-27, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVD+E + +E+G + + + + + + + G + Sbjct: 65 EYCVVDIEVNNSKPNIGQVIEIGAVKIKNLKIVDTFEFLIYAK--DVPKYVERVTGINQE 122 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L EA + + +L + F FD +A Q ++ G + Sbjct: 123 MLKNEASQ----KEILRKFRLFLGESVFVAHAADFDYNFLAHQFEKENL-------GEIL 171 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L L E GL + E L +P H A+GDA TA F M Sbjct: 172 NRFLCTLTLSQKTL----EAERYGLKYLMEELKLPEETHHRALGDAKTTARIFLMCLENL 227 Query: 184 AAHL 187 ++ Sbjct: 228 PDNI 231 >UniRef50_Q7UJ56 Probable DNA polymerase III polC-type n=1 Tax=Rhodopirellula baltica RepID=Q7UJ56_RHOBA Length = 355 Score = 122 bits (306), Expect = 7e-27, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 17/165 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +D ET + ++ + V GE + + + P ++I+G Sbjct: 2 DFTAIDFET--ATRRSDSACQLAAVRVRGGEIVDSACWLIRPRPFVFSPANIQIHGITPG 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E + W E+Q L + N +FD ++ ++ P Sbjct: 60 MVREE----PEFGELWPEIQSTLGDDCLIAHNASFDLGVLMACLESHDHPVPD------- 108 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + A + GL +++ LG+ H A+ D Sbjct: 109 ---MQYSCTRAIARRTWPQQPRFGLKPLSDWLGI-RFRHHDALED 149 >UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactobacillus RepID=D0R432_LACJF Length = 938 Score = 122 bits (306), Expect = 7e-27, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 46/169 (27%), Gaps = 16/169 (9%) Query: 5 LIVVDLETTGL-DYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG ++ G + + + + + Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVVKTYSF-LINPHREIPQAVENLTHISNE 68 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + +++ L F N FD + + V + Sbjct: 69 DVAKAH----DFSYYAPKIRKILENTIFVAHNVNFDLPFLNYELVNAGLEPLTGKA---- 120 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + ++ L + RL + +N H A DA T Sbjct: 121 ------VDTVELAQIVFPTFPSYKLRDLTARLRIKHLNPHRADSDALVT 163 >UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales RepID=A8VXY5_9BACI Length = 935 Score = 121 bits (305), Expect = 8e-27, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 51/180 (28%), Gaps = 17/180 (9%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + +++DLETTG+ Y +++ ++ E L + + G Sbjct: 1 MN-RYVILDLETTGVAYDKGDRIIQIAYQVLEDQEVLKR-FSTYINYDKPVPAFIQSLTG 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L E+ L F N FD + V Sbjct: 59 ISGEHLKNA----PLFEEVAPEILSDLEEAYFVAHNVEFDLKFLNESLEDAGYASFQGPV 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + ++ + + L +A+ + H A D AT F+ L Sbjct: 115 ----------IDTVELARICLPSEDSYRLSDLAKTVQATHTAPHQADSDVEATRALFNEL 164 >UniRef50_A9FIM8 Exonuclease n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIM8_SORC5 Length = 298 Score = 121 bits (305), Expect = 8e-27, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 47/185 (25%), Gaps = 17/185 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + L+ +DLE TGL ++ +EV + + + ++G Sbjct: 30 SAPLVFLDLEMTGLRPESDRVIEVCAERTRGDACEDAITS--LVRPEPGVFGNAHVHGID 87 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R L A + G A+D + + Sbjct: 88 PRELAGA----PTFAELCDRIDQVTEGAVLVAHAAAWDVAFLEAELARAGRARR------ 137 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D + + L ++ LGV H A D A F + Sbjct: 138 --LPHYLDTLVLSRRAFALP---SHSLASLCRELGVHRERAHRAEDDVHALRAVFRKIVE 192 Query: 182 TAAAH 186 A Sbjct: 193 VLAPR 197 >UniRef50_C2JRY7 DNA polymerase III, epsilon subunit n=3 Tax=Enterococcus faecalis RepID=C2JRY7_ENTFA Length = 289 Score = 121 bits (305), Expect = 8e-27, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 21/181 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ I D+ETTGLD+ +++ G + T+ + ++ G Sbjct: 6 KEFIAFDIETTGLDFHQDAVIQISAARYVDG--IEVDYFDTLVNSDYIPDEITKLTGITN 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGR 121 + + D+L G N FD + Y++ Sbjct: 64 DQVLNA----PTLDEVMPYLFDYLGDTILVGHNIKSFDFPFLKA--KGYNIA-------- 109 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 H + D +AA + L + G+ + H+A+ D +A F L Sbjct: 110 -EGHEIYDTRYFAATRK--HGAVNNQLTTLKLLFGIDAI-SHNALNDVRISAIVFMELLK 165 Query: 182 T 182 Sbjct: 166 I 166 >UniRef50_Q1PZU3 Strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZU3_9BACT Length = 204 Score = 121 bits (305), Expect = 9e-27, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 17/181 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ET + + +GL ++ + + DP + I+G + + Sbjct: 4 VAIDFET--ANAKRSSVCSLGLAIIEEQTIVKRTSWLIRPPELYFDPFSTYIHGISAKDV 61 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + W E+ +L G+ N +FD +++ Y +P+ PL Sbjct: 62 EDK----PEFYQLWDEIFPFLEGSYLVAHNASFDMSVLCCILDVYKIPYPPLNYF----- 112 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAAA 185 A K L+ ++ L + H A DA A A + Sbjct: 113 -----CTLAIAKRVWPGLLGYALNKISRYLEIEFK-HHDAEEDAVACAKILLHAYNELGV 166 Query: 186 H 186 + Sbjct: 167 N 167 >UniRef50_C6NVW4 DNA polymerase III epsilon subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVW4_9GAMM Length = 475 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 56/187 (29%), Gaps = 16/187 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L +DLE TG + +EVG++ V + P + G Sbjct: 5 LDTTLAFIDLENTGGHLERDRIIEVGIILVAPAGEPEV-WSTLINPEIRLSPAISTLTGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A +++ L G + D + ++ F+ Sbjct: 64 DPADLAHA----PTFAQVAEPLREKLAGRLLIAHDARTDLAFLRQEWRRLGQVFTA---- 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + GLDA+ ERL + RH A+ DA A L Sbjct: 116 -------DVLCTLRLSRSLFPDEKRHGLDAIIERLQLHSAGRHRALTDARTVAIFLARLY 168 Query: 181 HTAAAHL 187 A L Sbjct: 169 SEQPARL 175 >UniRef50_C8X5R2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5R2_DESRD Length = 233 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 6/183 (3%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D E TGL + +G + ++ T A I+ + Sbjct: 36 FCVLDTELTGLR-RRHEIISIGAVRIEHLALKPLDRFYTEVCPKAWTKTGTLIHRISPQQ 94 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTVGRVW 123 + E+ +L + G N A D + + + P + + Sbjct: 95 CQDA----PKIGKVLPELIAYLGTSLLIGHNIALDLQFLQKACKKHLGHPLVHPCIDTLR 150 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 R+ + + + + L +A+ G+P H+A DA TA+ F L H Sbjct: 151 LARVYEESRWESYYDRFTLRVSYQLQELAQAYGLPCFPAHNAASDALQTAYLFVYLVHKL 210 Query: 184 AAH 186 Sbjct: 211 RET 213 >UniRef50_C6UMV7 Putative DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UMV7_HODCD Length = 182 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 16/184 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYYERG 64 I++D ETTGL T +E+ + ++ G H A ++G Sbjct: 9 IILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYFNPQPVKVSRSAFNVHGISNEF 68 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E +++ G+ N FD I+ R+ Sbjct: 69 LSDK----PAFKSCAREFLEFVAGHELIAHNARFDLQIINRELQMAGADPIDAG------ 118 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDMLRHTA 183 + + K + A+ +R + HSA D A ++++ Sbjct: 119 ---CWRDSLSIAKQLFPN-RSNSMAALCKRFNLECETETHSAARDCELLARVYELILDEK 174 Query: 184 AAHL 187 + Sbjct: 175 RRRI 178 >UniRef50_D1BFD5 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BFD5_SANKS Length = 611 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 51/174 (29%), Gaps = 16/174 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+GL ++V + V+ +L ++ P + ++G Sbjct: 22 YAVVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPGVDPGP--VHVHGLTRER 79 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L Q G + + +R N FD +A + P S Sbjct: 80 LAGA----PQYQDVAGTLDELVRDRVLVAHNARFDWGFLAAESDRARAPLSVD------- 128 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L A + P L VA GV H A D Sbjct: 129 ---RRLCTLALSRRLDLPVSDLRLATVAAHWGVQQRRAHDAEDDVRVLVEVLRH 179 >UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma RepID=DPO3_MYCGE Length = 1451 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 53/186 (28%), Gaps = 20/186 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG-ESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ D+ETTGL +E + E + + +++ EI + Sbjct: 415 TFVIFDIETTGLHGRYDDVIEFSARKIKNNSEIDHQQFFLKIDKP--IPKTITEITKITD 472 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGR 121 L + +++++L N FD + Q Y++ Sbjct: 473 EMLEGGIDQQ----QGLEKIRNYLDDCVMVAHNGINFDLPFLQTQFEKYNIKP------- 521 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + + + L L + +L + + H A D A F Sbjct: 522 LTNPLIDTLC---LSWALNPLFSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVFFYF 578 Query: 180 RHTAAA 185 + Sbjct: 579 KKQLKE 584 >UniRef50_Q482N7 DNA polymerase III, epsilon subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q482N7_COLP3 Length = 256 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 16/190 (8%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAA------ADPKAM 55 K+LI++D ETTG++ + VE+G + + + H ++ L + + + Sbjct: 14 KRLIILDTETTGINPREGHRIVEIGCVEMINRQLTGRTYHAYIKPLDQRGQVFQMEQEVI 73 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 I+G L + + E D++RG N FD + + ++ Sbjct: 74 NIHGLTNEFLADK----PIFSQVVHEFIDFIRGAELVIHNSKFDVGFMDHEFSLFNSMGR 129 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-VVNR--HSAIGDAAAT 172 + K + + LD +A V +V+R H A+ DA Sbjct: 130 SQDKVPMTEDICTITDTLKVSKDELGSPK--TLDYLARFYRVDKLVDRTYHGALIDAQLL 187 Query: 173 AFCFDMLRHT 182 A+ + + Sbjct: 188 AYVYIEMTRK 197 >UniRef50_A8VVX5 DNA polymerase III alpha subunit (Gram-positive type)-like protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VVX5_9BACI Length = 242 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYY 61 V DLETTG + + +G ++ + +E + + G Sbjct: 59 TFTVFDLETTGFFCNLGDEVLAIGATKLNRNRIDFPEQFYEVIEPVKPMSAFVSNLTGMT 118 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A+ + ++ +G+ +FD + + + Sbjct: 119 HEEVTAGL----AFPEAFSKFLEFSKGSILVAHPASFDVQFLKILADRWRLH-------- 166 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A + P + LD + + + RH A+ DA TA F L Sbjct: 167 GYDPLYIDQYQLAKS---LYPRKRNSLDELIKLYQIETSGRHHALADAYMTATVFHHLLD 223 Query: 182 TAAAH 186 A Sbjct: 224 ELDAK 228 >UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium RepID=C8W8J2_ATOPD Length = 978 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 58/180 (32%), Gaps = 19/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++V+D ETTGL + +E+ + E + V+ + + Sbjct: 15 LEDDIVVLDTETTGLSFKKCSLIEISAAKLSGREIIER-FQTFVDPGCPIPEEITTLTSI 73 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A + +++ G N FD T + R S+ + + Sbjct: 74 TDEDVKGA----PSAKEAVAALAEFVGGLPVLAHNATFDRTFIERVPGGTSVSDTWIDT- 128 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + ++ + L ++AE G + H A D A + +L Sbjct: 129 ------------LSLSRIALPRLSSHKLSSMAEAFG-TMKVTHRASDDVDALCGMWRILL 175 >UniRef50_A4ASW0 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4ASW0_9FLAO Length = 222 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 65/183 (35%), Gaps = 11/183 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + IV D ETTGLD + +G ++V +G+ + +++EI+G Sbjct: 33 RFIVFDTETTGLDIVNDRILSIGAISVFSGKLDIGDSLEIYLKQKIFKAESVEIHGI--- 89 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ + A ++ + AFD ++ +P ++ Sbjct: 90 -LKEGSIEKHTEEEAIISFLKYIENGILVAHHAAFDIAMINAGLRRMGLP-------KLK 141 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L + L D ++ LD ++ +RH++ GDA T + Sbjct: 142 NKVLDTGVLFKKTTLCEDKNKIYSLDYLSGIFKFRNHDRHTSSGDAFLTGMILLKILSNL 201 Query: 184 AAH 186 Sbjct: 202 KGK 204 >UniRef50_B5YGV6 DNA polymerase III alpha subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGV6_THEYD Length = 230 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 53/187 (28%), Gaps = 15/187 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 +VVD E TGL+ + +G + + +++ I+ Sbjct: 23 DFVVVDTELTGLNEFRDNIIAIGAIKMKGRTIKIGDIFYRTVSPSTKKFRKESIMIHEIT 82 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLT 118 L + E E + + G D T + ++ + Sbjct: 83 PSELEKCPQIEP----ILREFIKFSKNCLVVGHCVDIDLTFLKKEIRNNLREIFEPFSID 138 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 ++ + L D + L+ +A L + H A+ DA TA F Sbjct: 139 TLLIYKWLI------KKEILPSDFSNKNSLEDIALSLDIEPKELHDALSDAFITAQIFQR 192 Query: 179 LRHTAAA 185 L Sbjct: 193 LLAYLGE 199 >UniRef50_D2EP63 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG (Fragment) n=4 Tax=Streptococcus RepID=D2EP63_9STRE Length = 157 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 17/170 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVDLE T A ++VG++ ++ GE + V D E+ G Sbjct: 5 NDRYVVVDLEATSTG-SKAKIIQVGIVVIENGEIINQYA-TDVNPHEPLDSHIKELTGLT 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 +R L + + G++ + ++ F N FD+ ++A Sbjct: 63 DRRLAAA----PEFSQVAGKIFELVKDGIFVAHNVQFDANLLAEFLFFEGYEL------- 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 R + ++ E L + + LG+ + + H+A+ DA A Sbjct: 112 ----RTPRVDTVELAQVLYPQFEKYNLGILCQELGIELEHAHTALSDAQA 157 >UniRef50_B8HW82 UvrD/REP helicase n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HW82_CYAP4 Length = 829 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 16/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +L+V D+ETTG +E+ + ++ G+ + + +++GY Sbjct: 457 QQGRLVVFDVETTGFSGAADEVIELAAIALEHGQI--REEFNRYIRNTVPVGETQQVHGY 514 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + E ++ +G G N FD +V + F Sbjct: 515 SDDFLATHGQPAAT---VFREFCEFSQGAVLVGHNLGFDIKMVTAHARRVGIEFPS---- 567 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R D A +E L +A L + H A D T + + Sbjct: 568 ----PRWEDTLNLAHR---FIQSENYKLATLASSLNLSATPTHRASDDTRTTVALLEAIL 620 Query: 181 HTA 183 Sbjct: 621 PLL 623 >UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria RepID=C2L049_9FIRM Length = 178 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 18/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + IV D+ET + +G+ V+ G+ + V D +++ G + Sbjct: 3 RFIVFDVET--PNRKNNRISAIGITVVEEGKI-SKEFYSLVNPETNFDYFNVKLTGISKA 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + W +++ N +FD ++ + Y + W Sbjct: 60 SVKDA----PTFPELWQQIEPLFSDGMLVAHNASFDMNVLKNCLLDYEID---------W 106 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L G+ L+ V E G+ + H A D+ A A Sbjct: 107 KPYARYLCTVKMGRSLFPD-RSHKLNMVCEDFGISL-QHHRADSDSHACAEILLRYLEAG 164 Query: 184 AA 185 A Sbjct: 165 AE 166 >UniRef50_A1Y2U5 Transposase n=2 Tax=Bacteria RepID=A1Y2U5_9BACT Length = 275 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 57/177 (32%), Gaps = 12/177 (6%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IV+D ETTGL D A E+ +L+V L V +A I+ + + Sbjct: 87 IVLDTETTGLG-DDAEICEITILDVTGAPILD----TLVRPTRPIPVEATAIHKITDAMV 141 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + G T N AFD+ ++ + + + LT Sbjct: 142 A----SAPSWPEVAEQYAAAVAGRTVVAYNVAFDARLLRQTYQIHGITAPVLTTACAMLM 197 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 Y + D L A GV H A+ DA T L+ Sbjct: 198 YAEWHGEYDRSR---DRWRWLKLIEAATDCGVAEDGAHRALADARMTLGVLRYLQRR 251 >UniRef50_A1SNC5 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Nocardioides sp. JS614 RepID=A1SNC5_NOCSJ Length = 405 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 57/175 (32%), Gaps = 17/175 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++DLETTGL VE+GL+ V ++ V P I+G Sbjct: 4 YTIIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQRDVGP--THIHGIT-- 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 R+ L + L G T N FD+ + + S+ P T Sbjct: 60 --ARDVLDAPTFQEVAPYLIGSLAGRTLVAHNARFDTQFLDYEFERASVGTRPPTPS--- 114 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 ++ L L VP + H+A+GDA A A + Sbjct: 115 ----LCTMQLSSSYL---RGASRKLKDCCVAANVPHADEHTALGDARAVAGLLNY 162 >UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface antigen n=1 Tax=Campylobacter rectus RM3267 RepID=B9D3Q4_WOLRE Length = 289 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 20/182 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+G ++ +E+G L + GE + T E+ G Sbjct: 73 FCVVDIETSG-GINSGQIIEIGALKLQNGEIIGK--FETFVHAPYVPENISELTGITAEH 129 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L A + + +L + F N FD + G + + Sbjct: 130 LKNA----PNLAFVMEKFKVFLGQSVFVAHNVRFDYGFIGATLEALGY-------GELLN 178 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LRHTA 183 HRL + + I + GL + E LG+ H A+ DA A A F L+ Sbjct: 179 HRLCTID---LARRTI-ASPKYGLGTLKEILGINN-AHHRALSDAIAAAEIFKYSLQKLP 233 Query: 184 AA 185 + Sbjct: 234 SE 235 >UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHF7_9ACTN Length = 1045 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 56/180 (31%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + ++V+D ETTG + ++ + G + + V + + Sbjct: 53 LDEDVVVLDTETTGFSQNHDELTQIAAARMKQGRIVEWFV-TFVNPGKPIPEEVARLTDI 111 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + A ++ ++ + N AFD + + + + Sbjct: 112 HDEDVADA----PSPDDARIQLAAFVGDSCIVAHNAAFDKGFCTKSQGGAPLSDN----- 162 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + ++ + + L + + PV H A D A + ++ Sbjct: 163 -------LWIDSLDLARIALPRLKSHRLIDIVKAFDAPVS-THRADADVEALCAAYRIML 214 >UniRef50_A0L6G9 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G9_MAGSM Length = 230 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 8/176 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGYYE 62 + + +DLETTGLD + + + VG + V G + H V+ A + ++G + Sbjct: 43 KFLALDLETTGLDPNKSEILSVGFVPVYNGRVVLSGCAHYLVQPEGAISHASAVVHGITD 102 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +V V L+G+ + + + + + Sbjct: 103 DHAEAYG---EPLSVVLPRVLKALKGHVLLAHHCPIELNFIRKACQRLYGEMPLIPAVDT 159 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + L R +P H A+ DA A F Sbjct: 160 ----LVIERQIMDRRSGTYEPGALRLFTARTRYNLPRYAAHDALMDAIACGELFLA 211 >UniRef50_B2Q2X9 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q2X9_PROST Length = 234 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 14/178 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGY 60 +Q++ +DLETTGLD + + +G++ + + L H V + IN Sbjct: 49 TQQILSIDLETTGLDPEKDRILSIGMVTIADSKILLKSAQHYYVNDNEPVKAETAVINHI 108 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A +G A + +++ +P Sbjct: 109 TPEQLSDGV----SLPHAIASFLHEAKGKCILAHGSAIEHAFLSKALNIKELPLLWFDTL 164 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L+ L A+ R +P + H+A+ DA ATA F Sbjct: 165 NIEKTLLS---------HKNINRNDFSLSALRSRYQLPDYDAHNALSDAIATAELFLA 213 >UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2L6_SALRD Length = 538 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 15/162 (9%) Query: 23 VEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEV 82 +E+G + V G + V + + ++ G ++ + Sbjct: 1 MEIGAVKVRDGSVVDR-FQQLVNPQQSVPGRITKMTGITTGMVFEA----PPADEVLPDY 55 Query: 83 QDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDP 142 + +L N +FD + + + P L + + Sbjct: 56 RAFLGDGILVAHNVSFDGSFLDAELQRMGDETLPNE----------TLCTVRLARRLLPG 105 Query: 143 TELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + +GL +A+ + V RH A+GDA AT+ A Sbjct: 106 LDSKGLSRLAQFYDIDVEGRHRALGDAEATSVVLRRFVSQLA 147 >UniRef50_D0L8D9 Exonuclease RNase T and DNA polymerase III n=2 Tax=Corynebacterineae RepID=D0L8D9_GORB4 Length = 590 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 49/186 (26%), Gaps = 19/186 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++VD+ETTG + + + + +D + + P + I+ Sbjct: 10 WVLVDVETTGTNARRDRVLSLATMTLDYDGRVEDEYATLLNPGCDPGP--VHIHNLTRDR 67 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L+ V +Q L G T N FD + + Sbjct: 68 LHGA----PTFDVTMSPLQQMLAGRTMVAHNATFDHGFLVEEARRLGATLPIDH------ 117 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM---LRH 181 L + L +A G+ H A D A F L Sbjct: 118 ----RLCTVTLARRLQLDVPNVKLGTLATYWGIRQRAAHDARDDVRTLAEVFRRSLDLAE 173 Query: 182 TAAAHL 187 T L Sbjct: 174 TLGLRL 179 >UniRef50_B5YGW1 DNA polymerase III PolC-type, putative n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGW1_THEYD Length = 225 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 14/181 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGY 60 K+ +V+D E TGLD + +G + + L + KA+ I+ Sbjct: 17 NKEFVVIDTELTGLDEKNDSIISIGAITMRERSILIGDIFYRILNPQCKPKDKAVLIHKL 76 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPL 117 L + + E D+++ G D + ++ + + Sbjct: 77 TSTELEQ----CPDIKLILKEFIDFIKNRPIVGHFIEIDIKFLRKETSKWLNTGFTPEAI 132 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 +++ + K + L +AE + V H A+ DA TA F Sbjct: 133 DTYIIFNWLIEREIISKKFK------GAKSLPEIAEAFDIKVDMLHDALYDAFITAQIFQ 186 Query: 178 M 178 Sbjct: 187 R 187 >UniRef50_A9NGM6 DNA polymerase III, epsilon subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGM6_ACHLI Length = 227 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 57/180 (31%), Gaps = 15/180 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLL---NVDTGESLYFVPHITVEQLAAADPKAMEING 59 K+++V D ETTGL +EVG + + + ++Q + G Sbjct: 6 KKILVFDFETTGLTPKRDKVIEVGAVLLEKIGDTYEIVQEIDYLIKQQTPITDFISNLTG 65 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L R+ + E+ + D N AFD ++ TY + Sbjct: 66 ITNEMLARDGVEEEYAFRQLDNLID--EDTLLVAYNLAFDIGFLSALYQTYVAHNYKI-- 121 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + D A + L+ R + H A DA AT D L Sbjct: 122 ----QNDILDCMAVYKDRYPYP----HKLENAVARFELSNNQAHRASEDAKATFKVLDCL 173 >UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0X6_DEIDV Length = 1683 Score = 119 bits (300), Expect = 4e-26, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 61/183 (33%), Gaps = 13/183 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETT +D A +EV + V+ G + + E+ G + Sbjct: 9 YVILDTETTSVDRAEARLLEVAAVRVEDGRICD--TLQLLVSGERIPREVAELTGIRQEE 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRVW 123 L R+ +V ++ G N FD ++ R S+ F V Sbjct: 67 LDRDGQPLP---DVLKQVLAFMGDLPVVGHNAQGFDVPLLKRLCREQSLKFQVPFVFDTL 123 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLRHT 182 AA P E GL+ + R G + H + D AAT+ + Sbjct: 124 LLAPLAFAAVV------PPVEGYGLEGLHARFCGDVHDDAHRTLADCAATSRLLAYMVER 177 Query: 183 AAA 185 A Sbjct: 178 LRA 180 >UniRef50_A3Q8X5 Exonuclease, RNase T and DNA polymerase III n=6 Tax=Gammaproteobacteria RepID=A3Q8X5_SHELP Length = 239 Score = 119 bits (299), Expect = 4e-26, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 60/179 (33%), Gaps = 8/179 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 +L+ +D ETTGL+ D V +G + L H TV +++ I+G Sbjct: 48 ELLAMDFETTGLNVDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPREQLAEESVIIHGITH 107 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLTV 119 + + + +V + + G A + + R + + F + Sbjct: 108 SDILDA----PDLSAIFEQVLEQMAGKIMVVHYQAIERLFLERALIRRIHQGIEFPLIDT 163 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + +L D L R G+P H+A+ DA ATA Sbjct: 164 MALESEIQKRQHGGLLQRLKGDKPGSVRLGQSRSRYGLPSYPPHNALTDAIATAELLQA 222 >UniRef50_C8P6J0 Putative uncharacterized protein n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P6J0_9LACO Length = 224 Score = 119 bits (299), Expect = 4e-26, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 13/184 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +DLET+GL+ TA + +G + G + F + ++ + G + Sbjct: 54 DFVSLDLETSGLNPTTAQIISIGAVKRIAGHTTTFYRLVKLQSGKKLAGDIARLTGLNSQ 113 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E + A ++Q + + G N FD + + + + Sbjct: 114 QLATEGV---AVKEALIDLQSFAKKLPIVGYNLLFDERFLQTAVIRAGI--------VQF 162 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 ++++ D+ Y L + R G+ H+++ DA AT D L Sbjct: 163 NNKMVDVLPYVKTVDKFCD--NYHLATILTRYGIKNEQAHNSLADATATMKLVDKLIKIH 220 Query: 184 AAHL 187 + Sbjct: 221 GFRI 224 >UniRef50_D0WP21 Putative DNA polymerase III epsilon subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WP21_9ACTO Length = 240 Score = 119 bits (299), Expect = 4e-26, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 55/184 (29%), Gaps = 7/184 (3%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +I D ETTG+D V L+ V + + +A ++G Sbjct: 10 SSPVIGFDTETTGIDPKRDRLVTCSLVAVTEEGV--SKRYWLADPGVEIPERAGAVHGIT 67 Query: 62 ERGLYREALT-EQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E ++ + + + + N +D T++ + + +P + Sbjct: 68 TERARAEGRPSKEVLEEVAALLAEHMGRGHPAVAFNATYDFTLLESELDRHGLPTLAERL 127 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDM 178 G + + L+ + GV + H+A D AT Sbjct: 128 GGEVFPVVD--PYLLDRSADRYRKGKRRLEDLCRHYGVHAEDDFHNAEADVLATLRLLAA 185 Query: 179 LRHT 182 + Sbjct: 186 IVRK 189 >UniRef50_A1TXA3 Exonuclease, RNase T and DNA polymerase III n=8 Tax=Gammaproteobacteria RepID=A1TXA3_MARAV Length = 240 Score = 119 bits (299), Expect = 5e-26, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 52/179 (29%), Gaps = 8/179 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYE 62 L+ +D ETTGL+ D V +GL+ V + ++ I+G Sbjct: 49 PLVALDFETTGLEADQHSIVSIGLVPFTLTGIQLGQCWHQVVRPRLPLHKTSVTIHGITH 108 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLTV 119 + + + L G + + + F + Sbjct: 109 SEIENA----PDLEDVLDPLFEHLNGRIPVVHYRNIERPFLNTALQWRLNEQLRFPVIDT 164 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H + +L L R G+P H+A+ DA ATA Sbjct: 165 MAIEAHLHPNRNPSRWQQLMGKKPISIRLADSRLRYGLPHYASHNALIDAIATAELLQA 223 >UniRef50_A5UUT9 DNA polymerase III, epsilon subunit n=4 Tax=Chloroflexaceae RepID=A5UUT9_ROSS1 Length = 233 Score = 119 bits (299), Expect = 5e-26, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 8/186 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL---AAADPKAMEINGY 60 V+D+ETTGL+ + +GL+++D G T+ + A +P+A+ ++G Sbjct: 37 PYSVIDVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGL 96 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + L G D + + Sbjct: 97 LPQDVEQA----PPPGDVLPVLLRRLTGRVLVVHVADIDIGFLRQALRRLYQVDPRGPAI 152 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D L A+AE G+PV H+A+ DA TA F Sbjct: 153 DTARLAW-HFQRNQRLIDGADQEPALQLRALAESAGLPVYAEHNALNDALTTAQVFLAQI 211 Query: 181 HTAAAH 186 + + Sbjct: 212 NAMQPN 217 >UniRef50_C4VNH6 DNA polymerase III n=4 Tax=Lactobacillus jensenii RepID=C4VNH6_9LACO Length = 316 Score = 119 bits (298), Expect = 5e-26, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 61/175 (34%), Gaps = 14/175 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYY 61 ++D+ETTGL E+ + V G+ + + ++NG Sbjct: 33 DDYTMLDIETTGLSPYRDRVTELAGIKVRNGKVVDKYSQLVKHPKNNKVPQFITKLNGID 92 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E+ + + + A + ++++ + G N FD + +++ R Sbjct: 93 EKLILTQGIP---VKEAITDFRNFIGEDVIVGYNVNFDLNFIYDLCEKFNLE-------R 142 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + ++ + L ++ L +RLG+ H + D+ T F Sbjct: 143 LSNNYIDVLHF---SRVFFKKESHNRLLDCIQRLGISESEAHRGLKDSLDTKAVF 194 >UniRef50_Q2SPW2 Putative exonuclease n=2 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPW2_HAHCH Length = 192 Score = 119 bits (298), Expect = 5e-26, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 20/181 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +++V+D ETTGLD D A +E+ ++++ V L P+A EI+G Sbjct: 14 SSRVVVLDTETTGLD-DQAEVIEISVMDMRGNVLFDQ----LVRPLNPVPPEAAEIHGVT 68 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + + G T N FD ++ + Y +P Sbjct: 69 NEKLANK----PNFPDVYISLWRAIGGRTVVAYNADFDRRLLKQTCAAYRLPM------- 117 Query: 122 VWHHRLADLAAYAAGKL----NIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + + AYA + + L A ++G+ V H A+ D T Sbjct: 118 IEANWQCAMNAYARYRKEPDAKRGGYRRQSLAKAAAQMGIEVYGAHRAVADCFTTVEVIR 177 Query: 178 M 178 Sbjct: 178 A 178 >UniRef50_A3J795 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J795_9FLAO Length = 202 Score = 119 bits (298), Expect = 5e-26, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 67/171 (39%), Gaps = 12/171 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ +V D ETTGLDY + + +G + ++ + + +++ I+G Sbjct: 32 KRYVVFDCETTGLDYKSDRILSIGAVAIENNQIIVGDFMEVFLLQDVFKAESVPIHGI-- 89 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + A A ++++ T G + FD ++ + VG++ Sbjct: 90 --LKEGKEEKIVEAEAIIRFLEFIKDATLVGHHVDFDIEMINQGLARL-------EVGKL 140 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + + Y K + LD + + + +RH+A GDA TA Sbjct: 141 KNQAMDTDVMYQKLKYL-PQEQHSSLDELCDIYKIRKSDRHTASGDAFITA 190 >UniRef50_Q057S0 DNA polymerase III, e subunit n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057S0_BUCCC Length = 231 Score = 119 bits (298), Expect = 6e-26, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 66/182 (36%), Gaps = 18/182 (9%) Query: 6 IVVDLETTGLDYDT-----ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +D+ETTG++ +E+G++ + H + + + A +I+G Sbjct: 9 VFLDIETTGMNKYGCIYLNHKIIEIGIIETINRKYTGRYIHYYLYPQRSIESSAYKIHGI 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E L + + E+ ++++ + N FD + + + ++ + + Sbjct: 69 SESFLSNK----PTFKDIYKEIFNFIKNSEIIVHNSNFDISFLDYEFFLLNIGINKIKTF 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + LDA+ R + +NR HSA+ DA + Sbjct: 125 ST------ITDTLFIARKLFPGKKN-NLDALCARYKITNINRNFHSALLDAKILMKLYMY 177 Query: 179 LR 180 + Sbjct: 178 MT 179 >UniRef50_B9CLN3 Putative exonuclease, RNase T and DNA polymerase III n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLN3_9ACTN Length = 251 Score = 119 bits (298), Expect = 6e-26, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A++++ +D ETTGLD +++ +++ + P A EING Sbjct: 20 AEKILCIDTETTGLDPRKDEIIQLSMIDGHGKSIFES---LICPPTRKRWPNAQEINGIT 76 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + +VQ+ + G N FD +++ + FS Sbjct: 77 PKMVKGK----PELEEVADQVQEAINAADLIVGYNLPFDISMMEAE----GFDFSDKEQY 128 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +++ K + T L A+ G+ H A DA AT F + Sbjct: 129 DLMEDYAQVFGRWSSAKDDYLWT---KLTTAAKHYGIKF-AAHDAGEDARATIKLFYAML 184 Query: 181 HTAA 184 Sbjct: 185 SDPE 188 >UniRef50_Q4ZCJ2 ORF013 n=5 Tax=root RepID=Q4ZCJ2_9CAUD Length = 306 Score = 119 bits (298), Expect = 6e-26, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 53/184 (28%), Gaps = 18/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D+ET + + + LL + + + I+G E Sbjct: 2 DFVAIDVET--ANEQRSSICSIALLKFQDNKMRD-AIYTHINPETYFSSINTSIHGISEE 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + +L + N +FD + Y++P Sbjct: 59 DV----MDSPKMYQMHEAIIRFLDNHIIVAHNTSFDMYALCDSFKKYNLPLPSNQYF--- 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 Y K ++ L +AE + H+A DA A + Sbjct: 112 -------CTYRLSK-DLYNLPSYRLQDLAEHFDIKNEEYHNAFYDAKVCAKIAYNILKDQ 163 Query: 184 AAHL 187 A+L Sbjct: 164 DANL 167 >UniRef50_C9R9F3 DNA-directed DNA polymerase n=1 Tax=Ammonifex degensii KC4 RepID=C9R9F3_AMMDK Length = 233 Score = 118 bits (297), Expect = 7e-26, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 60/184 (32%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + DLETTGL + +G + + E LY V P ++ G Sbjct: 46 EFVAFDLETTGLKPGAGDEIIALGAVRLRGNELLYPAFDQLVRPGRRVPPLVEKLTGISS 105 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L A +L G N AFD + + + R+ Sbjct: 106 GLLRYA----PPLASVLPFFLGYLSRGFPLGFNVAFDLAFLNQALKPHG---------RL 152 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D+ A E +D +A L V + RH+A+GDA A + LR Sbjct: 153 SEQAVLDVWTVARA--LDARCEHATMDEIASFLKVNLEGRHTALGDALIHARMWLKLRER 210 Query: 183 AAAH 186 Sbjct: 211 LKEK 214 >UniRef50_A4B904 DNA polymerase III subunit epsilon n=1 Tax=Reinekea blandensis MED297 RepID=A4B904_9GAMM Length = 236 Score = 118 bits (297), Expect = 7e-26, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 55/178 (30%), Gaps = 8/178 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + VD+ETTGL+ + + +GL+ + + +++ ++ Sbjct: 47 EFVAVDIETTGLNAEQDDIISIGLVPFTAQRITLAKARHWLVRTRNLTSESVVVHRITHS 106 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPLTVG 120 + + EV L+G + + F + Sbjct: 107 DIAQA----PPLRAVLSEVIPCLQGRQVVVHYRYMEREFFRQSVAGLHESTWLFPVIDTL 162 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L + +L L V ER +P H+A+ DA ATA Sbjct: 163 ELEAAHLRQKQSI-VSRLFKQTLPSLRLPNVRERYNLPAYENHNALTDALATAELLQA 219 >UniRef50_A0Y5B9 DNA polymerase III subunit epsilon n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y5B9_9GAMM Length = 234 Score = 118 bits (297), Expect = 7e-26, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 52/184 (28%), Gaps = 9/184 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYE 62 + +D ETTGL+ V VGL+ H V+ ++ I+G Sbjct: 44 PFVALDFETTGLNSKADDIVSVGLVPFTLARIYCKQSKHWVVQPRRNLSESSIVIHGITH 103 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLTV 119 + + D LR A + + + F + Sbjct: 104 NDVDNA----PDFDNIIAPLLDALRSKVIVVHYAAIERGFFNSALLLRLKEHIEFMVVDT 159 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L G++ L+ +R +P H A+ DA ATA Sbjct: 160 MELERRALKAKQGL-IGQIFNTKLGSLRLNDCRKRYSLPSYEGHHALTDALATAELLQAQ 218 Query: 180 RHTA 183 Sbjct: 219 LRHH 222 >UniRef50_D0IFC0 DNA polymerase III epsilon subunit n=1 Tax=Vibrio sp. RC586 RepID=D0IFC0_9VIBR Length = 233 Score = 118 bits (297), Expect = 8e-26, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 9/179 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 L+ +D ETTGL+ + +GL+ +T L + V+ + ++ I+G Sbjct: 43 PLVALDFETTGLNAQQDDILSIGLVPFNTQRIALKQARYWLVKPSRPLEEDSVVIHGITH 102 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVAR---QRVTYSMPFSPLTV 119 L V + E+ D LRG + + + + ++ F + Sbjct: 103 TELKHAQEP----EVVFSELFDALRGKIVVAHFRHIEREFLRQTTLKLWEEAVEFPIIDT 158 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + +L P L R G+P + H A+ DA ATA F Sbjct: 159 LEIELSVQNTQRSL-WQRLLRSPIPSVRLGQSRLRYGLPAYSPHQALTDAIATAELFQA 216 >UniRef50_Q3SMK3 Exonuclease n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SMK3_THIDA Length = 233 Score = 118 bits (296), Expect = 9e-26, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 13/184 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 + +VVD+ET+GLD + +G + V G+ V Q K + I+G Sbjct: 41 RCVVVDVETSGLDPRRDRLIAIGAVAVSRGKVQLGDSLEIVLQQDTVSEKGNILIHGIG- 99 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R + A A ++L + + AFD+ ++ R + +G Sbjct: 100 GTAQRAGVPP---ADALLAFLEYLGKDPLVAFHVAFDAPMIRRAMKAF--------LGLD 148 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + H ADLA A LD + RH+A+ DA +TA LR Sbjct: 149 FSHAWADLAYVAPALYPRLARRRRSLDDWMSEFKIGNYARHNALADALSTAQLLLALRKA 208 Query: 183 AAAH 186 A Sbjct: 209 LDAR 212 >UniRef50_C9Z7X4 Putative exonuclease n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z7X4_STRSW Length = 215 Score = 118 bits (296), Expect = 9e-26, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 67/189 (35%), Gaps = 17/189 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGY 60 + + V+DLETTGLD + VG + V G ++ + A +++++G Sbjct: 20 SAEYCVIDLETTGLDLRRDEIISVGAVPVREGRIDLGDSFYSLVRPRCAVSVASIKVHGL 79 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + A + L G + ++R + T Sbjct: 80 RPGDLD----SAPDPATVGQALSPRLSGRVVVAHAAWIERAFLSRTQSTVGWSQ------ 129 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEG---LDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + D AA A + L+ +A RLG+PV H A+GDA TA F Sbjct: 130 ---VRAVVDTAALARATGCWAGHDSGREPPLELLARRLGLPVCTPHHALGDALTTATVFL 186 Query: 178 MLRHTAAAH 186 L A Sbjct: 187 ALAARAERT 195 >UniRef50_C4LI81 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI81_CORK4 Length = 555 Score = 118 bits (296), Expect = 9e-26, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 45/185 (24%), Gaps = 20/185 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEING 59 I D+ET + + G++ G+ + P I+G Sbjct: 220 PPSFIAFDVET--ANEANGSICQFGVVVYHEGKEAESHTWLCQPPSAWPDFTPATTAIHG 277 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTF--AGSNPAFDSTIVARQRVTYSMPFSPL 117 + E ++ LR N FD + + + Sbjct: 278 ITPDKVANE----PSCHDRLEQLAALLRKENLPIVAHNAKFDMVALRDAARAEKVDIPHI 333 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 T Y + L VA+ G + H A+ DA A Sbjct: 334 TFA----------CTYLLARALHPELPNYKLTTVAQSAGSEAFHHHDALADARACGEIML 383 Query: 178 MLRHT 182 L Sbjct: 384 SLCGI 388 >UniRef50_UPI000185C325 putative DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C325 Length = 545 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 54/185 (29%), Gaps = 18/185 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYY 61 D+ET + DT +++G+ V G+ + L D + I+G Sbjct: 165 PFAAFDVET--ANEDTGSIIQLGVAVVRGGKVTERYSWMCRPPKGLEYFDEANVAIHGIT 222 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E + D + N FD T ++R +P L Sbjct: 223 AADVAGE----PSFPEQLAKFVDVVGDLDVVAHNARFDFTALSRACRAEGIPAPKLNFA- 277 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 Y + L +AE G + N H A DA A A L Sbjct: 278 ---------CTYMWARQMQLGLPNLKLPTLAEAAGASLENHHDATADAVACAEVALWLME 328 Query: 182 TAAAH 186 A Sbjct: 329 QQRAT 333 >UniRef50_Q041D1 DNA polymerase III, alpha subunit (Gram-positive type) n=20 Tax=Lactobacillus RepID=Q041D1_LACGA Length = 320 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 14/176 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGY 60 + ++D+ETTGL E+G L V GE + F + ++NG Sbjct: 30 PENYTLIDVETTGLSPYRDRITEMGGLKVRHGEVVATFSELVKFPDSNKVPTFITKLNGI 89 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + + L A + ++++ + G N FD V Y + Sbjct: 90 DEAAIEEKGLP---VQEAIKKYREFIGSDPIVGYNVNFDLNFVYDLAEKYHLTVLNNDYV 146 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 V Y + L R+ + H + D T F Sbjct: 147 DV----------YRLARSFYPQERHNRLLDCMHRMNIAENQEHRGLDDCLDTKKVF 192 >UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Corynebacterium RepID=C2BLZ4_9CORY Length = 221 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 12/183 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG + +E+ + D+ + H + A K I+G Sbjct: 21 FAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTLLNPDGKAI-KNSHIHGITNDM 79 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + +T + +G+ ++ G N FDS ++ + + + Sbjct: 80 V----VTAPTFSEVYGDFTSYIDGMQLFAHNAPFDSKMIVAEVDRMTGGDNDGDEFF--- 132 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 D A L+ P L A+ +RLG+ + H+A+ DA +T L Sbjct: 133 -PFIDTIDLAKQMLDCGP---YNLPALLDRLGLDNPDAHAAVADATSTVNMLHALFGFKR 188 Query: 185 AHL 187 + Sbjct: 189 GEI 191 >UniRef50_B3XRZ2 DNA polymerase III, epsilon subunit n=1 Tax=Lactobacillus reuteri 100-23 RepID=B3XRZ2_LACRE Length = 283 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 64/183 (34%), Gaps = 20/183 (10%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VD ETTGL +++ + + + T+ ++ A +N E Sbjct: 15 YVSVDTETTGLYPMYGDKIIQLSAIKYIDDKLVD--TFDTLINPDGSNNNAKSVNNISES 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + G+ +++ + G N +FD + + + L + Sbjct: 73 SLKNQ----PTFDEVIGDFVNFVEDLPWVGHNLSFDFSFLKSE---------ELKIASFK 119 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + + L +I + L +A++ + N H+++ DA A + LR Sbjct: 120 KNSVDTLQI----ARSIYGNKGNKLQQLAKKFNIDYKNLHNSLYDAQIAASLYQHLRSVF 175 Query: 184 AAH 186 + Sbjct: 176 QTN 178 >UniRef50_B6WSP3 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSP3_9DELT Length = 173 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 21/180 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + +D ET+G Y VGL ++ G ++ + ++ ++G Sbjct: 2 MTGRYVALDFETSG--YAAHSACAVGLCRIEDGAVTD--SFYSLIRPPSSRVLFTHVHGL 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L W ++ ++ N FD ++ + Sbjct: 58 TWPLLKDA----PTFTEVWPQLAAFMEGSRAILAHNAGFDRRVLHASCQALGL------- 106 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +L L + ++ LD+V + G+P+ + H A DA A A + L Sbjct: 107 ---VQPQLPFLCTLKGARRSLP-LASRALDSVCDYFGIPLDHHH-AGSDARACAEIYLRL 161 >UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2_9FIRM Length = 202 Score = 118 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 19/174 (10%) Query: 5 LIVVDLET-TGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D ET TG V + V G+ + D + I+G + Sbjct: 20 YIAIDFETATG---SMNSACSVATVEVRDGQLKEGWTTLIQPPGLRFDSFNIGIHGISPK 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A W E+++ L G N +FD ++ + + Sbjct: 77 DVTDA----PTFAEVWEELKERLAGKIVVAHNASFDMGVLKASLLANRLQAP-------- 124 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L+ V L + H A+ DA A Sbjct: 125 --YFRTCCTVRIARKVWPALDDHKLNTVGAHLNI-NFRHHRALDDARTCAAILL 175 >UniRef50_B0UN90 Exonuclease RNase T and DNA polymerase III n=3 Tax=Rhizobiales RepID=B0UN90_METS4 Length = 223 Score = 118 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 62/185 (33%), Gaps = 15/185 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYERG 64 + +D ETTGLD V V + + L TV + P+A++++ Sbjct: 32 VALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESLRATVRSDRPSSPEAIKVHRL---- 87 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLTVGR 121 L E + + ++ G G FD ++ + +P + V Sbjct: 88 LNAEIREAEPLDAVLPALLRFIGGRPIVGYYTEFDVRMLDKSVRRQFGIRLPNPRIDVSS 147 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++H + E LG+P + +H A DA TA + LR Sbjct: 148 LYHAA-------KYRDAPDYVKIDLSFARILEDLGLPALPQHDAFNDALMTAMIYLQLRD 200 Query: 182 TAAAH 186 A Sbjct: 201 LLARR 205 >UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase III n=3 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F5B Length = 203 Score = 118 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 66/186 (35%), Gaps = 22/186 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEING 59 M + V DLETTGLD E+ + D E IT P+ + + G Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDIRITKNSGTKLTPEIVNLTG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E + + E A + ++ G + FD +AR + P S + Sbjct: 61 ISESMMRG-GVPEPV---AIMLLSCFMSGTIVVAHHAPFDLAFLARYQFE---PDSFVCT 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + +D E L +VAER G+ + H A+ D AT F + Sbjct: 114 RALSKLVESD--------------ESASLASVAERRGIELTGHHRAMNDVEATVKVFQQM 159 Query: 180 RHTAAA 185 + A A Sbjct: 160 KAEADA 165 >UniRef50_B8F0B3 Exonuclease RNase T and DNA polymerase III n=2 Tax=Thauera sp. MZ1T RepID=B8F0B3_THASP Length = 201 Score = 118 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 14/179 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTGL D A VE+ +++ L V +A I+G + L Sbjct: 23 LILDTETTGLG-DDAEVVELAVIDCAGAVLLD----TLVRPSGPVPAEAAAIHGITDAML 77 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + G N FD ++++ Y + + Sbjct: 78 AGA----PTWSELHARFCGLVEGRQVVIYNHEFDVRVISQTARRYGLQAPQGFDQVLDPG 133 Query: 126 RL-ADLAAYAAGKLNI----DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ + AYA + + L A A++ GV V N H A+GD T + Sbjct: 134 RIHCAMQAYAEFRGEWSAEKGQYRWQKLSAAAQQQGVTVENAHRALGDCLMTLGVVRAM 192 >UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKT0_9SPHI Length = 245 Score = 118 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 21/178 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNV-DTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K ++ DLETTG D V++ ++ + G + + P+ +++G Sbjct: 5 KPIVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEKER--LINPTIPIPPEVTKVHGVS 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVG 120 + + + +++RG AG N FD ++ + + F V Sbjct: 63 DEMVKDA----PTFHQVAKSLFEFIRGCDLAGYNHLNFDMPLLIEEFARAGVVFPEPDVQ 118 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFD 177 + ++ L A + + N H+A+ D AT F+ Sbjct: 119 YIDVMKV------------YYHFHPRTLSAAYQLYCHKELENAHNAMADTQATLEIFE 164 >UniRef50_D0Z0S6 DNA polymerase III epsilon subunit n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z0S6_LISDA Length = 237 Score = 118 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 12/180 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYY 61 + +V+D ETTG D + + VG + + + + P+ IN Sbjct: 51 EYLVLDFETTGFDPEQDDILSVGFVTISQQRIDLSTATELLIKDSQQKVKPETAIINHIT 110 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYSMPFSPLTVG 120 L + A + + ++G + + Y +P P+ Sbjct: 111 TEKLAHGV----ELDCAMAALFNAMKGKIMVAHGAMIEQRFLNHYLATRYQLPPLPI--- 163 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +W L + + + + L + +R G+P H A+ DA ATA +L+ Sbjct: 164 -IWLDTLTIEKSLSIHRQQL-KANDYRLAQIRQRHGLPAYPAHGAVIDAIATAELLLVLQ 221 >UniRef50_UPI0001C41BCD exonuclease n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41BCD Length = 261 Score = 118 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 57/181 (31%), Gaps = 10/181 (5%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++I D ET+GL+ + +E+G+L ++ G+ + + D I G Sbjct: 44 NRIIFFDTETSGLNPNYCKIIELGMLVIEDGKIIE-EYDKLINIGERIDSTITRITGITN 102 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L E ++E A E + G N FD + + + + Sbjct: 103 DMLIDEGVSEGDVAQDLKE--KLISGTLMIAYNCQFDLSFAYGLLKRH---YPHEAEAII 157 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D + E + VN H AIGDA L+ Sbjct: 158 EDVKWLDPMTVFKDRKAYP----HKFSDAVEHYDIRNVNFHRAIGDAKGLYEVCLSLKDE 213 Query: 183 A 183 Sbjct: 214 R 214 >UniRef50_O67875 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O67875_AQUAE Length = 210 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 17/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D E T LD A + +G + V E + + KA EI+G Sbjct: 36 RFVVFDCEATELDVKKAKLLSIGAVEVKNLEIDLSKSFYEILKSDEI--KAAEIHGITRE 93 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + +++G+ G FD ++V + + Y + Sbjct: 94 DVEKYGKEP---KEVIYDFLKYIKGSVLVGYYVKFDVSLVEKYSIKY------------F 138 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + + + LD + + LGV + RH+A+ DA TA F Sbjct: 139 QYPIINYKLDLFSFVKREYQSGRSLDDLMKELGVEIRARHNALEDAYITALLFLK 193 >UniRef50_A0JY37 Exonuclease, RNase T and DNA polymerase III n=4 Tax=Micrococcaceae RepID=A0JY37_ARTS2 Length = 337 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 56/187 (29%), Gaps = 19/187 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA--AADPKAMEIN 58 M +D ET + P VGL V G + + D + I+ Sbjct: 1 MGLDFTAIDFET--ANGFRGSPCAVGLSKVRGGVVVEEASWLMRPPEDHDRFDYHNVRIH 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + + E+ ++ G+ A N AFD ++ +P Sbjct: 59 GIRPEDVAG----LPRFGELFPEIGAFIGGDVLAAHNAAFDLGVIRSALEVSGLPGPA-- 112 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + L AE GVP+VN H A DA A A Sbjct: 113 --------YDYVCTVMLSRRCY-SLVSNSLPYAAEEAGVPLVNHHDAAEDARACAGILID 163 Query: 179 LRHTAAA 185 + A Sbjct: 164 IARRNGA 170 >UniRef50_C6X498 DNA polymerase III subunit epsilon n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X498_FLAB3 Length = 185 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 22/182 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +D ET ++ E+G+ V+ G+ + I P+ ++++G Sbjct: 3 DFCAIDFET--ATHERNSACEMGICVVEDGQIVKTQTWLIKPPNYPYFHPRNIDVHGITP 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R + W E ++ + GN N FD+ ++ Y Sbjct: 61 RDVQD----SPTFDEIWHEAENLMYGNLMVAHNAGFDAGVLRSCLDYYGF---------- 106 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC----FDM 178 + +L L + + K + GL ++AE+ + H A DA A F+ Sbjct: 107 YKPKLNYLCSISIAKKSWKNLPKYGLKSLAEQHQISFK-HHRAGDDAEVCAKISLLAFEK 165 Query: 179 LR 180 L Sbjct: 166 LM 167 >UniRef50_B7GKX3 Exonuclease n=2 Tax=Bacillaceae RepID=B7GKX3_ANOFW Length = 222 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 55/182 (30%), Gaps = 19/182 (10%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 V D ETTG T +E+G + V + V P +E+ E Sbjct: 29 FTVFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPNRDLPPVIVELTNITE 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGN---TFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + A + ++ F G +FD ++ + M F Sbjct: 89 EKVKHA----PTAIEALQQFFQFVEQKQSVCFVGHYISFDLFVLKHELRREKMKFR---- 140 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 D L+ A+ G + RHSAIGDA TA+ F L Sbjct: 141 ----KPTFIDTLDLIGFIAPSYDMRD--LERYAQAFGTRMYERHSAIGDALTTAYLFVEL 194 Query: 180 RH 181 Sbjct: 195 LQ 196 >UniRef50_C7M082 Exonuclease RNase T and DNA polymerase III n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M082_ACIFD Length = 475 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 53/183 (28%), Gaps = 17/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + ++D+ETTG EV ++ V G +L V P + + G Sbjct: 17 RFAILDVETTGAASGADELTEVAMMVVQEGRAL-AHLQSLVHTDRPIPPAIVALTGISNE 75 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + L G G N FD + + + + V Sbjct: 76 LVADA----PSARTVIERTARLLEGTVMVGHNVRFDRSFLGAAADAAGITLPEVPV---- 127 Query: 124 HHRLADLAAYAAGKLNIDPT-ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L ++ +D L +A L +P H A+ D T L Sbjct: 128 ------LDTLTLSRVLLDGEVPNHRLATLAHYLQLPP-PSHRAMADVVTTVALLHRLIER 180 Query: 183 AAA 185 A A Sbjct: 181 AGA 183 >UniRef50_Q1MYK1 DNA polymerase III subunit epsilon n=2 Tax=Gammaproteobacteria RepID=Q1MYK1_9GAMM Length = 238 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 58/178 (32%), Gaps = 9/178 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 + +D ETTGL+ + + +G++ + V +++ I+ Sbjct: 46 FMALDFETTGLNPNDDSIISIGMVPFSLQRIYCNNAVYWVVRPNTPLSEESILIHHIKHS 105 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTVG 120 + + + + + L + + + + ++ F + Sbjct: 106 EIQ----SAPRIERLLEPLLEKLSEHILVVHFQRIERLFLNNTLKEHLGETLQFPLIDTM 161 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L G++ P L+ ER +P H+A+ DA ATA F Sbjct: 162 EIEKKALKARQGLT-GRILNKPVGGIRLNNCRERYSLPQYQSHNALIDAQATAELFIA 218 >UniRef50_Q9ZX22 Gp57 n=2 Tax=unclassified Siphoviridae RepID=Q9ZX22_BPMT4 Length = 177 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 101/187 (54%), Positives = 125/187 (66%), Gaps = 10/187 (5%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +QL+VVD ETTGL D A +EV +N+DTG L+FVP +T EQLA A P AM++N Y Sbjct: 1 MTRQLVVVDCETTGLH-DGAAILEVAAVNIDTGAELHFVPFVTREQLAQAQPMAMQMNRY 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 YERG+++ L+ T A+ ++ + L GNTF GSNPAFDS ++A Sbjct: 60 YERGIWQRRLSPDSTDAAYWKLANMLAGNTFGGSNPAFDSRLLAAAM---------PDGA 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 WHHRLADLAA+ AGKLN+DP EL GLDAV ERLGV V +RHSA+ DA ATA CF +LR Sbjct: 111 PEWHHRLADLAAFTAGKLNLDPVELPGLDAVCERLGVTVSDRHSALADAHATATCFTILR 170 Query: 181 HTAAAHL 187 AA L Sbjct: 171 EIPAAAL 177 >UniRef50_Q3B459 DNA polymerase III, epsilon subunit n=8 Tax=Chlorobiaceae RepID=Q3B459_PELLD Length = 236 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 13/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAA-DPKAMEINGYYE 62 +++V D ETTG D T + +G + ++ + + +A+ ++G + Sbjct: 48 RMVVFDTETTGFDLKTDGVISIGAVAINGLSINVADSFEVLVRQDRVGRSEAVAVHGLLK 107 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR---VTYSMPFSPLTV 119 + + A A +++ + + +FD ++ R + + Sbjct: 108 KDIAGGAGEV----EAAEAFLEYIGSSILVAQHASFDVAMLNRILSETFRIRLFNGVVDT 163 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + LD + +R G+ + +RH+A GDA TA L Sbjct: 164 ASLAKRL-----EKGPYYNLAHKAGEYRLDHLCQRYGIRLYDRHTAAGDAFLTAQLLQRL 218 Query: 180 R 180 Sbjct: 219 L 219 >UniRef50_Q1QZ77 Exonuclease n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QZ77_CHRSD Length = 205 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 12/185 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 ++I +D ETT LD A V + + V G L + +++ + ++ I+G Sbjct: 30 EVIALDCETTDLDPRQADLVAIAAVKVRDGRVLTSESLDLRLQRPDSLSSDSIRIHGLRG 89 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYSMPFSPLTVGR 121 L L + A + D++ G +D ++ R T+ Sbjct: 90 VDL----LGGEALGDALNTLLDFIGNRPLVGWCIDYDVAVINRHLRPRTGFDLPNRTID- 144 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L A + D +A++E LGVPV+ RH+A+GDA TA + L Sbjct: 145 -----VCRLYARERRRAQPDVEPDLRFEAMSEALGVPVMGRHTALGDAVTTALMYLRLCR 199 Query: 182 TAAAH 186 AA Sbjct: 200 GQAAS 204 >UniRef50_D1W3Q1 DNA polymerase III subunit epsilon domain protein n=36 Tax=Bacteroidetes RepID=D1W3Q1_9BACT Length = 194 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 14/178 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K +D ET + + VG++ V+ G+ H+ P+ + ++G Sbjct: 31 KDFAAIDFET--ANSCRSSVCSVGVVIVENGKITDSYYHLIRPYPNYYHPRNIAVHGILP 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 W ++ ++ N AFD + + TY M + Sbjct: 89 SDTQDA----PTFPEVWAQIAPLIKHLPLVAHNKAFDESCLKACFATYGMAY-------- 136 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ + L VA LG +VN H A+ DA A + + Sbjct: 137 LNYPFYCTLIASRRVFCHHELANHQLHTVAAHLGYNLVNHHHALADAEACSVIALNIL 194 >UniRef50_C4XRC4 DNA polymerase III epsilon subunit n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XRC4_DESMR Length = 242 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 53/184 (28%), Gaps = 6/184 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGYYE 62 + +V+D E TG D V V + + + + ++ ++G Sbjct: 45 EFVVLDTELTGFDPKRDAIVSVAAVRLRGLSIMAGETFAALTRPQRDVPRQSSLVHGLTA 104 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTVGR 121 L + A + D++ G + D + Y + + Sbjct: 105 STLSQAA----DLEAVLLRLLDFIGPAVIVGHHVDLDMGFLNAASRRYFGDELAAPCIDT 160 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + L ++ R G+P H A DA A A+ F L Sbjct: 161 LRLAMAYEEKRLSLEGGAGLEHAAFDLPSLCRRYGLPEFAAHDARHDALAAAYLFVYLAK 220 Query: 182 TAAA 185 Sbjct: 221 KLGQ 224 >UniRef50_D0WQJ6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQJ6_9ACTO Length = 206 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 58/174 (33%), Gaps = 15/174 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL VE+G++ +D V L A+ ++G + Sbjct: 3 YAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSLVNPLRGM--GAVFVHGLTDAD 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A +++ G N FD + + Sbjct: 61 VADA----PTLADLLPQIRGLFSGRALVAHNATFDVGFLNASFARAGY--------GMHV 108 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R A + K+ + P GL A AER GV RH A+ DA A Sbjct: 109 PREATVCTMELSKIYLPP-GRHGLAAAAERAGVATAKRHRALADAHTAAGLLRH 161 >UniRef50_C5WML0 Putative uncharacterized protein Sb01g037840 n=1 Tax=Sorghum bicolor RepID=C5WML0_SORBI Length = 583 Score = 116 bits (292), Expect = 3e-25, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 56/188 (29%), Gaps = 24/188 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++V D+ETTG +E + ++ G++ F I E+ ++G Sbjct: 382 TILVFDIETTGFSRREDRIIEFAVRDLMGGKNSTFQTLINPEKEVR----NAYVHGISNS 437 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT-------FAGSNPA-FDSTIVARQRVTYSMPFS 115 L + + ++ + N FD + + + Sbjct: 438 ML--CRPDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFRRCKLEMP 495 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTE--LEGLDAVAERLGVPVVN-RHSAIGDAAAT 172 D A ++ D ++ L + ER +P+ H A+ D Sbjct: 496 GD-------WLFVDTLPIARQLVDSDGSKLSSVSLKNLRERYNIPLTGSAHRAMQDVTTL 548 Query: 173 AFCFDMLR 180 + L Sbjct: 549 CYVLQKLT 556 >UniRef50_B2GAN1 DNA-directed DNA polymerase III epsilon subunit n=49 Tax=Lactobacillales RepID=B2GAN1_LACF3 Length = 179 Score = 116 bits (292), Expect = 3e-25, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 55/175 (31%), Gaps = 18/175 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I +D ET + + V + + + + +++G +ER Sbjct: 3 FIAMDFET--ASAKRFSACSLAITIVRNSQIQD-EFYTLINPQTPFFWRNTQVHGIHERD 59 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + W +Q++ + N FD++++ + + + Sbjct: 60 VKDA----PTFPEVWEHIQEFFTPDKLVIAHNATFDNSVLKNTLLHFEIEPP-------- 107 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + L+ + ++L + + + H+A+ DA A A Sbjct: 108 --VYQTLDTLKTSRQLFPAFPNHKLNTICDQLNIDLHHHHNALDDAHACANILLY 160 >UniRef50_B5JTW6 Exonuclease, RNase T and DNA polymerase III n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW6_9GAMM Length = 238 Score = 116 bits (292), Expect = 3e-25, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 51/186 (27%), Gaps = 8/186 (4%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +D+ETTGL+ + V +GL+ D + ++ ++G Sbjct: 47 EAPCLAIDIETTGLNAERDKIVSIGLVEFDASRVYLASAKHWLVNPGELSDSSVIVHGIT 106 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTI---VARQRVTYSMPFSPLT 118 + R E+ + G A + + + F + Sbjct: 107 HSDVSRA----PTIDAVIPELLRAMAGRLSVVHYRAMEREFFRMLGFSLWSQPWLFPVID 162 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L + + L R +P H A+ DA ATA Sbjct: 163 TFALETTCLKQSQGW-FDRFRNKSLPSLRLPDARLRYHLPEYENHDALVDAIATAELLQA 221 Query: 179 LRHTAA 184 Sbjct: 222 QIQKWQ 227 >UniRef50_Q0J9Z9 Os04g0623400 protein n=4 Tax=Oryza sativa RepID=Q0J9Z9_ORYSJ Length = 282 Score = 116 bits (292), Expect = 3e-25, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 19/188 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A ++V DLETTG + VE L ++ G++ F V + Sbjct: 59 AATILVFDLETTGYFHKDHRIVEFALCDLSGGKNSTFET--LVNPERTVPDYVEHLIKIG 116 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNT-------FAGSNP-AFDSTIVARQRVTYSMP 113 + R + + + + ++R + N FD+ +A++ S P Sbjct: 117 TDLVCRPGI--PRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAP 174 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAAT 172 + L L+A+ E G+ + H A+ D Sbjct: 175 LPADWLF------FDTLLLAKKMVKAEGKKRRTSLEALREHYGIVSHDDAHRAMRDVMIL 228 Query: 173 AFCFDMLR 180 + F + Sbjct: 229 SQVFQKMT 236 >UniRef50_B9ZJP8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJP8_9GAMM Length = 246 Score = 116 bits (292), Expect = 3e-25, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 11/185 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYYE 62 + + VDLETTGLD + + +G + +D + + ++ I+ + Sbjct: 55 RFLAVDLETTGLDPEHDAILSIGWVAMDGVRIDLSTADQRLVRADCPVPEQSAVIHRITD 114 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R A + + L+G + A + + PL V Sbjct: 115 REAAGGT----TVDSALDALFEVLQGRVLVAHHAALELGFLEEACYRLYGVRPPLPVVDT 170 Query: 123 WHHRLADLAAYAAGKLNID-PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 LA + P + L + R +P H A+ DA A F L Sbjct: 171 LR-----LAERQLRRAGRPIPADGMRLHTLRGRYNLPQYRAHDALFDALAAGELFVALVS 225 Query: 182 TAAAH 186 + Sbjct: 226 QLSPE 230 >UniRef50_D1BL33 Exonuclease RNase T and DNA polymerase III n=3 Tax=Veillonella RepID=D1BL33_VEIPT Length = 209 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 18/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ET + + ++ V G+ + + D + +EI+G + Sbjct: 3 DFVALDFET--ANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPK 60 Query: 64 GLYREALTEQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L E+ W + + L+GN N FD ++ Y +P+ L Sbjct: 61 DV----LHEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYA-- 114 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L+ +A +GV H A+ DA A Sbjct: 115 --------CTVKLSRAVWPDLVNHKLNTMAAYIGVEFK-HHYALDDAETCAKVVLEAAKL 165 Query: 183 AAAH 186 + Sbjct: 166 KGVN 169 >UniRef50_B6XU67 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XU67_9BIFI Length = 196 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 52/183 (28%), Gaps = 14/183 (7%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 IV+D ETTGL A +E+G + + E + + + + G + Sbjct: 21 DFIVIDTETTGLSVRKGARLIEIGAVKIHNDELVD-EFDQLINPFEHIPSRITGLTGIDD 79 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + E W N +FD + + + + Sbjct: 80 GMLLGK----PDVREVMDEFARWCSDTAVVMAHNASFDMSFLDNA-----VQLAYADRDA 130 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + H D + + + + + H A+ DA + +R Sbjct: 131 RFAHHFVDT--LDLSRRLHPEKRTHKVSTLIVDYHIADMEEHRALSDAKQEWMLYRAMRD 188 Query: 182 TAA 184 A Sbjct: 189 EAE 191 >UniRef50_Q2KXB5 Putative exonuclease n=4 Tax=Bordetella RepID=Q2KXB5_BORA1 Length = 193 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 47/164 (28%), Gaps = 15/164 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V DLETTGL +E + VDT + V + G ++ Sbjct: 28 FVVADLETTGLSAHACEILEFAAVRVDTEGQIASEYSQLVRINGRVPSFIARLTGISQQE 87 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + R+ A+ D++ N +FD+ + F Sbjct: 88 VIRDGKP---IDEAFRAFCDFVGTAPVFFHNASFDTRFLRATASRCGQAFDN-------- 136 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + L +AE LG H A+ D Sbjct: 137 ---DTHCTLLLARRAWPELRSHKLGMLAEHLG-AATPTHRALAD 176 >UniRef50_A3UR50 DNA polymerase III, epsilon chain n=6 Tax=Vibrionales RepID=A3UR50_VIBSP Length = 238 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 9/180 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 IV+DLETTGLD + L + +G ++V G L HI ++ + + + IN Sbjct: 50 DYIVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQINAETAVINHITP 109 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A A + +G + +++ + + + + Sbjct: 110 QMLEEGA----SIHDAMLTFFEAAKGKIIVAHACMVEERFISQYLLRC---YGLRAIPLL 162 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 W L + ++ L ER G+P N H+A+ DA +TA F + Sbjct: 163 WLDTLCIEKSMEKA-ISNHEEVDLTLAGTRERYGLPEYNNHNALADAVSTAELFLAQQKR 221 >UniRef50_A3Y5Y0 Exonuclease n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5Y0_9GAMM Length = 230 Score = 116 bits (291), Expect = 4e-25, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 7/183 (3%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V+D+ETTGLD + +G + + G + D K + I+ Sbjct: 35 NHEYLVLDMETTGLDATKDRVISLGWVLIKNGAIKLSSARHILLDNGPVDEKTVAIHMIT 94 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + +VA ++ L + + + + + + V Sbjct: 95 DQDISELGRNP---SVAMRYLRQLLLDKVLVVHHAPIEQAFLEKLWQAHKL-NPLTQVML 150 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D L D L +R G+P H A+GDA ATA + Sbjct: 151 DTLAMERDTQMRKQYMLTSDA---FRLGECRKRYGLPDYQGHDALGDAQATAELLLAQLN 207 Query: 182 TAA 184 A Sbjct: 208 HAG 210 >UniRef50_C8WHL0 Exonuclease RNase T and DNA polymerase III n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WHL0_EGGLE Length = 367 Score = 116 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 D+ET + +G + D ++ V ++ D + I+G Sbjct: 3 YTFFDVET--PNRRNDRICSIGAVVTDQDGTVVEKKSYLVNPESSFDDINVRIHGIAPVD 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + N FD +++ + V+Y +P ++ Sbjct: 61 VRNAKTFPELWYDSLSAFFPVDG---VVAHNARFDLSVLTKTLVSYDIPSPKMSYA---- 113 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L L V E LG+ + H A DA A F L A Sbjct: 114 ---CTLDMSKKIDFIGGG----KLPHVCEALGIELERHHQAESDATACMRVFWTLVGMAG 166 >UniRef50_Q5E1T7 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) n=50 Tax=Proteobacteria RepID=Q5E1T7_VIBF1 Length = 238 Score = 116 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 8/184 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 + + +D ETTGLD + + +GL+ H V+ + + ++ I+G Sbjct: 47 EFVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQDSLEENSVVIHGITH 106 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 L +V D L G + + + F + Sbjct: 107 SDLQGA----PDLRRILEQVLDALAGKVVVVHYRRIERDFFDANLRSLIGEGIVFPVVDT 162 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ + A L E L R G+P H A+ DA ATA F Sbjct: 163 MQIEGDYQQEQAKGFINWLKGKRPESIRLANTRLRYGLPSYPPHHALTDAIATAELFQAQ 222 Query: 180 RHTA 183 Sbjct: 223 VRYH 226 >UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine microorganism HF4000_001N02 RepID=B3T077_9ZZZZ Length = 299 Score = 116 bits (290), Expect = 5e-25, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 58/186 (31%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLL-NVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++ DLETTGLD V+ L+ + G + + + A I+G E Sbjct: 38 RVLGFDLETTGLDARKDRIVQYALIGSDVDGSHINLASLVDPRRG--IPTAASRIHGISE 95 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 + G + + + G N FD + + + + Sbjct: 96 EDVRGVG----SFETHVGAISELIEDAVIVGHNISNFDWRFLELECMRAGVETPIP---- 147 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D + A L + R + + HSA DA A+ + H Sbjct: 148 ---RAIVDTYSLARKLRI---PGRRTLGVLCARYDISIGRAHSADADAGASLLLLWSMMH 201 Query: 182 TAAAHL 187 + A Sbjct: 202 SHPAEF 207 >UniRef50_C2BJB2 DNA polymerase III subunit epsilon n=1 Tax=Corynebacterium pseudogenitalium ATCC 33035 RepID=C2BJB2_9CORY Length = 232 Score = 116 bits (290), Expect = 5e-25, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 14/183 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG + +E+ + D L H + K I+G Sbjct: 34 FAVIDTETTGFNKRYDRIIELAVARFDESFRLVDQWHTLINPDGKQI-KNSHIHGITNAD 92 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + E + G N FDS ++ + G + Sbjct: 93 VAHA----PTFPEVYTEFAARVDGMVLMAHNAPFDSKMILAEAERI------TPDGEDVY 142 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 D A A ++ L A+ + +G+ H+AI DA AT + L A Sbjct: 143 FPFVDTIALAKQMVS---LRSYKLSALLDHVGLHNPQSHAAIADATATGQMLNKLFGKEA 199 Query: 185 AHL 187 + Sbjct: 200 TKI 202 >UniRef50_A1VJH5 Exonuclease, RNase T and DNA polymerase III n=8 Tax=Proteobacteria RepID=A1VJH5_POLNA Length = 220 Score = 116 bits (290), Expect = 5e-25, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 66/189 (34%), Gaps = 12/189 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEING 59 + + +D ETTGL+ T + +G + + + + + +++ ++ Sbjct: 39 ENEWVALDCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRLSAESVRVHR 98 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSP 116 E+ + + A ++ ++ G FD ++ R + +P Sbjct: 99 LREQDVAQGI----SADEAMMKLMYFIGSRPLVGYYLEFDLAMINRVLFPMLGMGLPQPK 154 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + V ++ + +++ + L +P+ + H A+ DA A F Sbjct: 155 IEVSSMY---YDYKFHQLPHHARDSGSIDLRFESLMKDLNLPLWSAHDALNDAIMAALAF 211 Query: 177 DMLRHTAAA 185 LR A Sbjct: 212 LKLRQLRAG 220 >UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4FB13_9ACTN Length = 977 Score = 115 bits (289), Expect = 6e-25, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 19/179 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +IV+D ETTGL + + +E+ + E + V+ + ++ Sbjct: 44 EDDVIVLDTETTGLSHRDSELIEIAAARLRGREIVDR-FDTFVKPSGLIPEEITKLTSIT 102 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A + +++ G N AFD + + V Sbjct: 103 NVDVAHA----PSAVDAVASLAEFVGGCPVVAHNAAFDRGFIEQV-------PGGADVSD 151 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +W + + A ++ + L +AE G H A D A + +L Sbjct: 152 IW------IDSLALSRIALPRLASHKLAVMAELFGCE-SVSHRANADVEALCGVWRILL 203 >UniRef50_C2PKV5 DNA polymerase III subunit epsilon n=1 Tax=Bacillus cereus MM3 RepID=C2PKV5_BACCE Length = 280 Score = 115 bits (289), Expect = 6e-25, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 15/156 (9%) Query: 27 LLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWL 86 ++ V+ GE + + + D + I+G + LT + A+ + Sbjct: 1 MVFVENGEIID-TLYELINPEEDFDYYNIAIHGITPSDVKDA-LTFPEFYEAYKK---RF 55 Query: 87 RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELE 146 FD + Y +P V+++ L Y K I + Sbjct: 56 ENKLLVAHYLPFDGYALRDSLRRYELP-------SVYNNLLCT---YQLSKKLITGEKSY 105 Query: 147 GLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + + + N H+A+ DA A A L H Sbjct: 106 TLKYLCKHFSIELNNHHNALEDARACAQLMLQLSHK 141 >UniRef50_C2KP37 DNA polymerase III epsilon subunit n=3 Tax=Mobiluncus RepID=C2KP37_9ACTO Length = 258 Score = 115 bits (289), Expect = 7e-25, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 56/185 (30%), Gaps = 7/185 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + D ETTG+ L+ GE + + KA E+NG + Sbjct: 33 EWLGFDTETTGVWVRRDRIATASLIRRVGGE--DTAYNWVINPGVPMPVKASEVNGLTDE 90 Query: 64 GLYREAL-TEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + A E+ + G N AFD I+ + Y +P +G Sbjct: 91 YLEKHGEQPAVALAEIASELAAAMSSGVPVVGFNVAFDFEILEAELARYELPTLRARLGG 150 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 + L L+ L V E G+ H A D AT + Sbjct: 151 RIAPVIDPLVLDRT--LDRYRRGKRKLATVCEAYGLDGNRAFHQADSDVTATLDLLGAMI 208 Query: 181 HTAAA 185 + Sbjct: 209 ERYES 213 >UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB51_MYXXD Length = 219 Score = 115 bits (288), Expect = 7e-25, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 67/180 (37%), Gaps = 13/180 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTG---ESLYFVPHITVEQLAAADPKAMEING 59 + L VDLETTGLD +EV +L VD + + +LA A P+A+ + G Sbjct: 29 RTLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVKPTRLADAHPEALAVCG 88 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 Y + V L G AG N +FD + + + Sbjct: 89 YSDEEWRDAL----PLQEVLATVTPLLAGTLVAGHNTSFDWGFLVESYRRSELALPSVDY 144 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ D A+ A L E L+A+A+R G+ H A+ DA L Sbjct: 145 HRL------DTASLAWPLLATGEVESLSLNALAKRFGLHRPTPHRAMADARCALEVARCL 198 >UniRef50_Q47S15 Exonuclease n=3 Tax=Nocardiopsaceae RepID=Q47S15_THEFY Length = 516 Score = 115 bits (288), Expect = 7e-25, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 19/186 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V+DLETTGL+ A E+ ++ + ++ V ++ A +G + Sbjct: 20 TYAVLDLETTGLNPKRGARVCEIAVVRMRGDGTVLDEYSTLVNPGSSIRNSA--FHGITD 77 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + T G++ +L G G F+ +A + +P + Sbjct: 78 TWVK----TAPSFDQVAGDLLAYLDGAIVVGHKLDFEEKFLAAEFARLGVPLTG------ 127 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLRH 181 + L A + +D L + L G HSA+GDA + A L + Sbjct: 128 ----IPGLCTLVAARYQLDRYG-YRLAHLHHLLTGRWPTAEHSALGDARSLAAVLTELIN 182 Query: 182 TAAAHL 187 A L Sbjct: 183 AAPQPL 188 >UniRef50_Q1QYX2 Exonuclease n=2 Tax=Gammaproteobacteria RepID=Q1QYX2_CHRSD Length = 241 Score = 115 bits (288), Expect = 8e-25, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 8/179 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYE 62 ++ +D+ETTGLD V +GL+ D + V +++ + Sbjct: 50 PMMAMDMETTGLDEQRHAIVSIGLVPFDLRRIRMAQRRYWIVRPPRPLSERSITFHHITH 109 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA---RQRVTYSMPFSPLTV 119 + + E+ + + G+ + T + + R + F + Sbjct: 110 TEIEQA----PDLDEILDELLEAMAGHVMVVHYRHIERTFLNAAVKARRGEGIHFPVIDT 165 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + P L R G+P H A+ DA ATA Sbjct: 166 MSLEARLHRQPLWARFRRWMGRPPASIRLPDSRTRYGLPPYQAHHALIDALATAELLQA 224 >UniRef50_C6HVS0 DNA polymerase III, epsilon subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVS0_9BACT Length = 288 Score = 115 bits (288), Expect = 8e-25, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 16/187 (8%) Query: 2 AKQLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L+ VD+ETTGL ++ VE+G ++V L + + P I+G Sbjct: 28 EEDLLFVDVETTGLLFENDARIVEIG-ISVWDSFGLKERMTSLINPGSPIPPMYTRIHGI 86 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W E +G N +FD ++ R+ + + Sbjct: 87 DDVMVEH----SPTFLEFWMENGIRFQGKVVIAHNLSFDMGMINRELMR-------RDMA 135 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + + + + L +A+ LGV +RH A D AA + Sbjct: 136 PLGNPGIDTVPILKS---LLPREKNHKLSHLAKSLGVRHDSRHRAEDDVAALEQVLTIAL 192 Query: 181 HTAAAHL 187 L Sbjct: 193 DRPLEDL 199 >UniRef50_B7V8D9 Probable nuclease n=6 Tax=Pseudomonas aeruginosa RepID=B7V8D9_PSEA8 Length = 208 Score = 115 bits (288), Expect = 8e-25, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 16/189 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGY 60 A+++I +DLETT LD A + +G + V G+ + + VE + D +++ I+ Sbjct: 29 AEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKL 88 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPL 117 L + A +V ++ G +FD ++ R + + Sbjct: 89 RRADLEGQLQ----LEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSI 144 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + ++H + D D +A L VPV RH+A+GDA A A F Sbjct: 145 EISSLYHR--------KVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFM 196 Query: 178 MLRHTAAAH 186 L A Sbjct: 197 RLLKGPAPK 205 >UniRef50_Q10MN9 Os03g0301400 protein n=4 Tax=Poaceae RepID=Q10MN9_ORYSJ Length = 313 Score = 115 bits (288), Expect = 9e-25, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 54/190 (28%), Gaps = 24/190 (12%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++V D+ETTG +E + ++ G++ I E+ ++G Sbjct: 110 PATILVFDIETTGFSRRYERIIEFAVRDLMGGKNSTIQTLINPEREIK----NAYVHGIS 165 Query: 62 ERGLYREALTEQQTAVAWGEVQDWL-------RGNTFAGSNPA-FDSTIVARQRVTYSMP 113 + + + ++ + + N FD + + + Sbjct: 166 SSMV--CKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIE 223 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDP--TELEGLDAVAERLGVPVVN-RHSAIGDAA 170 D A + D + LD + E +P+ H A+ D Sbjct: 224 MPGD-------WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVI 276 Query: 171 ATAFCFDMLR 180 + L Sbjct: 277 TLCYVLQKLT 286 >UniRef50_D0I9Y6 DNA polymerase III epsilon subunit n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I9Y6_VIBHO Length = 239 Score = 115 bits (288), Expect = 9e-25, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 10/179 (5%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ET+GLD + + +G + + + L HI V Q ++ I+ Sbjct: 54 LVLDFETSGLDPEQDKVLSMGWVEIRQSQIRLSSARHILVNQPVLNGYESARIHHLRPET 113 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L ++E A+ ++ D ++G + +AR + + V Sbjct: 114 LRNCGVSE---HHAFSQLFDVMKGKVIVAHGSVIEKRFLARYLTLHYGQINLPLV----- 165 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L L + L +V G+P H+A+ DA ATA + H Sbjct: 166 -WLDTLKIEQYREQLRQVCRDWRLSSVRAAHGLPDYQAHNALNDAIATAELYLAQVHRL 223 >UniRef50_B6JP45 DNA polymerase III epsilon subunit n=17 Tax=Helicobacter RepID=B6JP45_HELP2 Length = 323 Score = 114 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 17/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +DLETTG +E+G + V GE + T+ ++ + E+ G Sbjct: 109 FSFIDLETTGSCPIKHEILEIGAVQVKGGEII--NRFETLVKVKSVPDYIAELTGIAYED 166 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 A E++ +L + F N FD + R V + + Sbjct: 167 TLNA----PSVHEALQELRLFLGNSVFVAHNANFDYNFLGRYFV-------EKLHCPLLN 215 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +L L L++ L + E LG + H A DA A+ F++ Sbjct: 216 LKLCTLDLSKRAILSM----RYSLSFLKELLGFGIEVSHRAYADALASYKLFEICL 267 >UniRef50_D1C750 Exonuclease RNase T and DNA polymerase III n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C750_SPHTD Length = 335 Score = 114 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 15/186 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +D ETTGL D A V++ +++ L V+ +A ++G Sbjct: 22 DDVVYLDTETTGLGPD-AEIVDIAVVDQAGRVLLNS----LVQPRNPIPAEATRVHGITN 76 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + E+ ++ N A+D ++++ Y + Sbjct: 77 KMVMNA----PEWPEVYQELARIIQDYPTLIIYNAAYDRRLISQTCRRYGISVPRAD--- 129 Query: 122 VWHHRLADLAAYAAGK-LNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 W + + AAY L+ A G P+ H A+ DA A + Sbjct: 130 -WQCAMLNYAAYRGEWNARYGNHRWHTLEKAAIETGAPMPPTHRALDDAQACRHVVLSMA 188 Query: 181 HTAAAH 186 A A Sbjct: 189 GVATAR 194 >UniRef50_C2D7T6 3'-5' exonuclease and CRISPR-associated Cas2 family protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7T6_9ACTN Length = 337 Score = 114 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 66/181 (36%), Gaps = 14/181 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ +++D+ET+GL+ +E+G + + + + I + L P ++ G + Sbjct: 168 KKFVILDIETSGLNETDDKIIEIGAIRICDKQVDDYQCLIKRDSL-NLSPAITQLTGLTD 226 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + A ++ ++ G N AFD + + + + + Sbjct: 227 IELANRGVNPNL---ALNGLKQFIGHLPVLGYNIAFDMRFINNELRSMNEEL-------L 276 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + K+ E LD V + G+ H A+GDA A + Sbjct: 277 DNREIDVMRFIKKEKMF---LESYALDNVLKVYGISATVPHRALGDAKLIAKLALKVNKI 333 Query: 183 A 183 Sbjct: 334 L 334 >UniRef50_C9KN36 Helicase, UvrD/REP/exonuclease family protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN36_9FIRM Length = 874 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 60/181 (33%), Gaps = 13/181 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A+ ++V D+E TG+D +++ L + + + + + ++ Sbjct: 510 AENIVVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAE-FKRLLRARRSVGDSYRVHKIS 568 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L +E ++ E + G G N +D +I+ + +P Sbjct: 569 DAILQQEG---EEPEAVLREFCAFAEGAVIVGHNVTYDLSILGSELARLGLPP------- 618 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + R D + L+ + E V + H A+ D ATA Sbjct: 619 LSYQRYYDT--LDIFRRFYPNLPNHKLEYLGEFCKVSHRSTHDAMDDVCATAEILTYAIE 676 Query: 182 T 182 Sbjct: 677 K 677 >UniRef50_B7A7M2 DNA-directed DNA polymerase n=3 Tax=Thermus RepID=B7A7M2_THEAQ Length = 247 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 21/190 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + ++V+DLETTGL +EV L+ ++ + F + P + G Sbjct: 70 EEAVVVLDLETTGLAPGLNEIIEVALVRLEGERRVAFQSLARPRRP--PSPFIQRLTGIT 127 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + L G T N +FD + + V Sbjct: 128 LEELEKA----PPLEEVLFRAYPLLEGATLVIQNASFDLGFLRPALGELGLELENPVVDS 183 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA----FCFD 177 + K + GLDA++E L + H A+ D T + Sbjct: 184 I-----------RLSKRAMRGLRRYGLDALSEVLELAPRAEHRALLDVERTLAVVYEVYY 232 Query: 178 MLRHTAAAHL 187 ML + L Sbjct: 233 MLTSGSPRPL 242 >UniRef50_A7GZ66 Nickel transport permease component NikD n=5 Tax=Campylobacter RepID=A7GZ66_CAMC5 Length = 273 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 23/183 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTG-ESLYFVPHITVEQLAAADPK-AMEINGY 60 ++ +VD+ET+G + +E+G L + G E F + A P+ ++ G Sbjct: 74 QEFCIVDIETSG-GITSGQIIEIGALKIKNGVEIGRFESFV----DAPFVPENITQLTGI 128 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + +L + F N FD +++ + G Sbjct: 129 SQSDLTGA----PSLKSVLERFKIFLGTSVFVAHNVNFDYGFISQSLSNIGL-------G 177 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + +L + + I ++ GL ++ E LG+ H A+ DA A + Sbjct: 178 MLLNRKLCTID---LSRRTI-ASQKYGLGSLKELLGINNT-HHRALNDAIAATEILKICI 232 Query: 181 HTA 183 Sbjct: 233 SRL 235 >UniRef50_Q1QRC1 Exonuclease n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QRC1_NITHX Length = 334 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 17/185 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 IV+D+ET + D A ++GL+ V GE + I V D I+G Sbjct: 3 NSDFIVLDVET--ANADYASICQIGLVEVVAGEVVSQEA-ILVNPDDYFDGFNTSIHGIT 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L G+ + FD ++R + V Sbjct: 60 ----ADHVCGAPLFHEVHAALSQRLSGSIIV-HHGPFDRVSISRACERCGIE--SFDVQW 112 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + R+ K L ++A G+ H A+ DA AT F + Sbjct: 113 LDNQRVVRRVWEQFSK------SGYALKSLAAFFGIEF-QHHDALQDAIATNEIFRRALN 165 Query: 182 TAAAH 186 + Sbjct: 166 ESGTT 170 >UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit n=9 Tax=Prevotella RepID=D1PV56_9BACT Length = 287 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 56/182 (30%), Gaps = 22/182 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + K LI+ DLETTGLD T +++ + VD + V P E+ Sbjct: 5 LTKPLIIFDLETTGLDLATDRIIQISYIKVDPQGNEERKSLF-VNPEKPIPPFVQELTHI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + +Q+ G FAG N FD ++A + + + F Sbjct: 64 TDDMVKDA----PTFKQIAKSLQETFAGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFQ-- 117 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV----PVVNRHSAIGDAAATAFC 175 RL D + E L A H A D AT Sbjct: 118 ----RCRLID------AQNIFHKMEPRNLAAAYRFYTGNKMEDDFQAHRADEDTEATYRV 167 Query: 176 FD 177 Sbjct: 168 LQ 169 >UniRef50_Q9K697 BH3832 protein n=4 Tax=Bacillus RepID=Q9K697_BACHD Length = 265 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 19/176 (10%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYY 61 ++V DLET+G D + +G + V +V P+ +E+ G Sbjct: 79 PVVVFDLETSGFYPDQGDRILSIGAVKVVGLTIQEEETFYSVVHTDTVPPENILELTGLS 138 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVAR-QRVTYSMPFSPLTVG 120 L ++R +T + + + ++ T +PF Sbjct: 139 VEELEAA----PPLTSVLESFYAFIRHSTLVAHHASHEKAFMSHVTWQTMKLPFE----- 189 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 HR+ D + P EL LD +PV NRH A D+ TA + Sbjct: 190 ----HRVIDTSFLTKIVA---PQELVTLDDCCAYYSIPVQNRHHAFEDSLMTAKLW 238 >UniRef50_D1C533 Exonuclease RNase T and DNA polymerase III n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C533_SPHTD Length = 197 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 67/184 (36%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ +D ETTGLD A VE+ +++ L V L P+ I+G + Sbjct: 22 RDVLFLDTETTGLD-GQAEIVEIAVVDAQGTVLLD----TLVRPLRPIPPEVQAIHGITD 76 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + + E+ R N AFD ++A+ + +P Sbjct: 77 RMVAGA----PRWPEVHAELVRLFRERPRAVVYNAAFDRRVIAQTAQQHCLPPPTAE--- 129 Query: 122 VWHHRLADLAAYAAGKLNI-DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 WH + AAYA + + LD A LG+P H A+GDA + Sbjct: 130 -WHCAMLRYAAYAGERHPVTGKYRWHRLDRAAAALGIPR-PTHRALGDALVCRGVVAAMA 187 Query: 181 HTAA 184 Sbjct: 188 GLGG 191 >UniRef50_Q2FLJ5 Exonuclease n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FLJ5_METHJ Length = 215 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 58/191 (30%), Gaps = 15/191 (7%) Query: 4 QLIVVDLETTGL-----DY-----DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK 53 + ++ D E+TGL D V++ + D + ++ Sbjct: 2 KYLIFDTESTGLPREEKDPFHYPEYWPRMVQLAWILTDGETIITEENYLIYPDGFVIPSS 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSM 112 +MEI+G E + ++ G N +FD +IV + + Sbjct: 62 SMEIHGITNERAREEGKP---VLEVLSVFSESIKQADVLVGHNVSFDRSIVTSEYSRAKL 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGDAAA 171 L + + + K + L + + P + H A D A Sbjct: 119 NAPILKLPYHCTMKTSTEVCKLPAKGGRRGYKWPSLSELHQFLFEEPFEHAHDASADVRA 178 Query: 172 TAFCFDMLRHT 182 C+ L++ Sbjct: 179 CMRCYLELKNR 189 >UniRef50_Q4A745 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A745_MYCS5 Length = 1451 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 20/187 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D+ETT L +E ++ + I ++ + Sbjct: 410 RYVVFDIETTSLSAYHGEIIEFAATIIENKAVVD-KVDIFIKSKEKLSHFTTRLTSITNE 468 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ + + A ++ D L N N FD + + +M T Sbjct: 469 MLDQKGI---ELKEALQKIYDVLNNNVAVAHNANFDYNFLIEKFDQNNMQAPKCTF---- 521 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVVNRHSAIGDAAATAFCF----D 177 + + ++ + + L+ L H A+ D A + Sbjct: 522 ------IDSLVVSRILFEHRDKHNLNEFCRNLSVNYDTEKAHRALYDTEVLADAWIEATL 575 Query: 178 MLRHTAA 184 L+ Sbjct: 576 KLKDIKQ 582 >UniRef50_B9F7W0 Putative uncharacterized protein n=3 Tax=Poaceae RepID=B9F7W0_ORYSJ Length = 901 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 54/188 (28%), Gaps = 24/188 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++V D+ETTG +E + ++ G++ I E+ ++G Sbjct: 700 TILVFDIETTGFSRRYERIIEFAVRDLMGGKNSTIQTLINPEREIK----NAYVHGISSS 755 Query: 64 GLYREALTEQQTAVAWGEVQDWL-------RGNTFAGSNPA-FDSTIVARQRVTYSMPFS 115 + + + ++ + + N FD + + + Sbjct: 756 MV--CKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMP 813 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDP--TELEGLDAVAERLGVPVVN-RHSAIGDAAAT 172 D A + D + LD + E +P+ H A+ D Sbjct: 814 GD-------WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVITL 866 Query: 173 AFCFDMLR 180 + L Sbjct: 867 CYVLQKLT 874 >UniRef50_Q1N3V9 Exonuclease n=1 Tax=Bermanella marisrubri RepID=Q1N3V9_9GAMM Length = 224 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 14/185 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+D ETTGL + +G + +++G+ ++ ++ I+ + Sbjct: 42 RYLVIDTETTGLSPKDNTLLSIGWVAIESGKVKLNSARHRYIKVKEGVGQSATIHQIRDC 101 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A EV ++ + + D + + + Sbjct: 102 ELQDGV----TINQAMAEVLTAMKDSVLVFHHAPMDMAFLNKYCRQLYNAP-------LL 150 Query: 124 HHRLADLAAYAAGKLNIDPTEL---EGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L + ++ D L +R G+ H+A+ DA ATA Sbjct: 151 MPLVDTLNIEKSRHMHNDQARKNGFFRLAHCRQRYGLSAHQGHNALTDAIATAELLLAQV 210 Query: 181 HTAAA 185 + Sbjct: 211 AHKGS 215 >UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECT2_9ACTN Length = 964 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 21/180 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 + +IV+D ETTGL +E+ + E + F + +QL + E+ Sbjct: 35 EEDVIVLDTETTGLSVQDNELIEISAARLSGREVVDRFDTFVHPKQL--IPAEITELTSI 92 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + A + D++ G N FD + + + ++ Sbjct: 93 TNADVADA----PSAVEAVAALADFVGGCPVIAHNATFDRSFIESVKGGVNVSD------ 142 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + A ++ + L +A+ G H A D A + +L Sbjct: 143 -------IWIDSLALSRIALPRLASHKLSFMADLFGCD-SVSHRANADVDALCGVWRVLL 194 >UniRef50_A8VW12 S-adenosylmethionine decarboxylase related n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VW12_9BACI Length = 233 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 48/173 (27%), Gaps = 15/173 (8%) Query: 7 VVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 V DLETTG + +G + + E + V + G E + Sbjct: 53 VFDLETTGFFPQKQDRILSIGGVKIKNNEITDDTFYSFVYYDQPISETIRHLTGIQEEDV 112 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 A + + F + A + + + + Sbjct: 113 LNA----PAEADVLTRFFAFAEDDLFIAHHAAHEKGFMQDALWR--------SFRATFQR 160 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 RL D + ++ T L+A + RH A+ DA A + Sbjct: 161 RLIDTIFLTKLQPDLRDTAE--LEACCRYFNIEPAGRHHALHDAKLAAELWIH 211 >UniRef50_A7A5A0 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5A0_BIFAD Length = 261 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 17/164 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VD+ETTGL A +E+G + + G + V K +I G Sbjct: 96 EDDYVAVDIETTGLG-RDARIIELGAVRIRHGRKVASYSQ-LVNPQIPIPAKVTQITGIT 153 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVG 120 +R + + A + + +T+ G N FD ++AR+ ++ Sbjct: 154 DRNVKGK----PTIDKALPKFYAFCGRDTWIGHNIRRFDIPVIAREAQRVGAGMPDVSFY 209 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + + + + + G+ RH Sbjct: 210 D----------TMELSQALLPQLDHHRVVDLIRYFGIAKTERHR 243 >UniRef50_B5JQE7 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQE7_9BACT Length = 220 Score = 113 bits (284), Expect = 3e-24, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 58/186 (31%), Gaps = 18/186 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGES--LYFVPHITVEQLAAADPKAMEINGY 60 ++L+ DLETTGL Y ++ + + G + V ++ Sbjct: 5 RELVAFDLETTGLRYKQEEITQIAGVRL-GGVIMNVEDSFCTYVNPGKPIPENIQKLTRV 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + + A DW+ T G + FD + + + + Sbjct: 64 RDEDVKDA----PKPLEALQAFSDWVGDATLFGHDIYRFDFNFIRKYARQEGVETRTV-- 117 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVVNRHSAIGDAAATAFCFD 177 R D LD +AERL G+ + RH A DA A + Sbjct: 118 ------RFIDTMDIFEVMWPDFSRLRNSLDDIAERLSAGLSSMRRHDAQSDAILLAHIYQ 171 Query: 178 MLRHTA 183 ++ Sbjct: 172 RIQDHP 177 >UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D091_MYXXD Length = 988 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 20/177 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +DLETTGLD +E+G + + G + + + G + L Sbjct: 12 VFLDLETTGLDPRVDEVIELGCIFFENGREVERFARLY-SASRPLPLTIRRLTGLTDADL 70 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + E+++ L G T N F+ + + H Sbjct: 71 EGH----PRFGTDIAELREKLSGWTVVAHNAPFEKGFL-------------PDLLGPIHA 113 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D L+++ G+ + H A+ D A Sbjct: 114 PVLDSCELMHY--LHPELPSHSLESLLRWGGLALRQPHRAVSDCEAVYSVLVHAMER 168 >UniRef50_Q2NHS5 Predicted 3'-5' exonuclease n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NHS5_METST Length = 445 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 62/180 (34%), Gaps = 19/180 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+DLE ++ +G++ + + + + D ++I Sbjct: 2 RDYVVMDLE--NPNFRQNSICAIGVMLIRNNNVVERK-YSLINPEDTFDNINIQITKIAP 58 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + W E+ WL N G N +D ++ + Y + Sbjct: 59 HMIKQ----SPTLPEYWSEISSWLSNNVIVGHNITYDLRVLTKSLQRYDLEVPEFNYC-- 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + N+D L+ +A++L + + N H+AI DA A F+ + Sbjct: 113 --------CTLTQSRKNLD-LPSYKLENIAKKLHI-IYNPHNAIEDARAAYELFEYINRH 162 >UniRef50_A7GA16 Exonuclease, DNA polymerase III, epsilon subunit family n=28 Tax=Clostridium RepID=A7GA16_CLOBL Length = 309 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 17/179 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D ET + P +G++ V GE + V ++ + P + I+G Sbjct: 3 FVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + E + WG+++ + N N +FD +++ Y++ Sbjct: 61 VQDEL----EFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEY----- 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + K + L+ V LG H A+ DA A + + Sbjct: 112 -----ICTMKLSKNFYSNIDNARLNTVNNFLGYKFK-HHDALADAMACSNILINISKEL 164 >UniRef50_Q47ME2 Exonuclease n=1 Tax=Thermobifida fusca YX RepID=Q47ME2_THEFY Length = 313 Score = 113 bits (282), Expect = 4e-24, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 64/186 (34%), Gaps = 20/186 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + VVD+ETTGL + A E+ ++ + ++ V+ + E +G Sbjct: 30 EYAVVDVETTGLRPEGGARVCEIAVVRMRGDGTVLREFTTLVDPRIKVTGQ--EFHGI-- 85 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + A E+ G G N F++ + + V +P Sbjct: 86 --AQGDVVGAPRAAELVAELCALFSGAVVVGHNLDFENAFLTSEFVPAGLPDG------- 136 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-VVNRHSAIGDAAATAFCFDMLRH 181 L L + E L + LG +H+A+GDA A A L H Sbjct: 137 -LPGLCTLRTLRSQVHL----ERYSLARASHALGGDWPTGQHTALGDARACAQLLAELLH 191 Query: 182 TAAAHL 187 A L Sbjct: 192 NAPGPL 197 >UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostridiales RepID=C7H6D8_9FIRM Length = 244 Score = 113 bits (282), Expect = 4e-24, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 21/185 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY------FVPHITVEQLAAADPKAMEIN 58 ++ D ETTGL+ ++ +E+ + V+ E + + + K +E+ Sbjct: 14 VVFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKIVELT 73 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWL--RGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 G + L E +TE A A + + N FD A + Sbjct: 74 GITDEQLENEGITE---AEAAARFTELISGGRVLLVAHNAQFDLLFTAEMLRRHGNGGPE 130 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATAF 174 + D + L + V N H AI D AA Sbjct: 131 ----ALKAADYLDSLTVYKDRRAYP----HKLANAILTYKLEGKVQNSHRAIDDVAALFE 182 Query: 175 CFDML 179 + Sbjct: 183 VCKAM 187 >UniRef50_D1J1T2 Whole genome shotgun sequence of line PN40024, scaffold_60.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1J1T2_VITVI Length = 332 Score = 113 bits (282), Expect = 4e-24, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 25/189 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +IV D ETTGL +E+GL ++ GE+ F + E++ ++G Sbjct: 127 TVIVFDTETTGLSRANDRIIEIGLQDLGGGENSTFQTLVNPERIVPNP----HVHGITTY 182 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT-------FAGSNPA-FDSTIVARQRVTYSMPFS 115 + R + + ++ + N FD + + + Sbjct: 183 MVNR--PDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVP 240 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPT---ELEGLDAVAERLGVPVVN-RHSAIGDAAA 171 P + R D A + + L A+ E +P+V H + D Sbjct: 241 P-------NWRFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYT 293 Query: 172 TAFCFDMLR 180 + ML Sbjct: 294 LSQVLQMLT 302 >UniRef50_C9LHX7 Exonuclease n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LHX7_9BACT Length = 256 Score = 113 bits (282), Expect = 5e-24, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 19/189 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +I D+E TGL VE+ + V + +A +NG Sbjct: 6 LTRPIIFFDIEATGLQIARDRIVELSYIKVFPDGREESKT-LRFNPEMHISAEATAVNGI 64 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + GE+ + AG N FD ++ + F Sbjct: 65 KDEDVAD----CPTFKEKSGELTAIFQSCDLAGFNSNVFDVPMLVEEFARAGSDF----- 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDM 178 + +L D+ E L A + + N H+A+ D AT Sbjct: 116 -DITKSKLVDVQTI------YHKLEPRNLIAAYKFYCNKDLHNAHTAMADTQATYEVLKA 168 Query: 179 LRHTAAAHL 187 L Sbjct: 169 QLDKYGKEL 177 >UniRef50_D1U8F3 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8F3_9DELT Length = 179 Score = 112 bits (281), Expect = 5e-24, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 19/175 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D ET D VGL+ VD GE + + +P ++++G + Sbjct: 7 TTRFVAIDFET--ADAKRDSACAVGLVVVDRGEIVARDYRLIRPPRRRFNPFCVQVHGIH 64 Query: 62 ERGLYREALTEQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W ++ + + N +FD +++A Sbjct: 65 WEDVADQ----PAFGELWPDLSPLFEGADFLVAHNASFDKSVLAACCRE----------S 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 R L + L V LG+ + + H A DA A A Sbjct: 111 RCLPPVQPFLCTVQLARTTW-QLPSNKLPNVCCHLGITLTHHH-AASDAEACARI 163 >UniRef50_C1YLW5 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YLW5_NOCDA Length = 360 Score = 112 bits (281), Expect = 5e-24, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 20/186 (10%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + V+D+ETTGL+ + A VE+ ++ V ++ A E +G Sbjct: 43 EYAVLDMETTGLEPREGARIVEIAVVRVRGDGKFVEEFSTLIDPRAPV--GGREFHGIG- 99 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + + L G G N F+ +A + V +P + + Sbjct: 100 ---EGDTVGAPTAAQVVPRLTELLSGAVVVGHNLDFEQRFLASELVPAGLPTGQAGLCTL 156 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLRH 181 + E L + RL G +H+A+GDA A A + Sbjct: 157 ------------RALRSQVELERYSLPKASHRLSGDWPTGQHTALGDARACAKLLAEMLT 204 Query: 182 TAAAHL 187 A L Sbjct: 205 NAPGEL 210 >UniRef50_O64348 Gp41 n=3 Tax=root RepID=O64348_BPN15 Length = 304 Score = 112 bits (281), Expect = 5e-24, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 54/185 (29%), Gaps = 20/185 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D ETTGL + + GE L V+ P+ EIN Sbjct: 20 DYVVIDTETTGLGEYAEIIEIA--IINMRGEVLLD---TLVKPTKPIPPEVTEINHITNE 74 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDST----------IVARQRVTYSMP 113 + + + +V + + + N FD+ + + + Sbjct: 75 MVA----SAPAWCDVFPKVLAIISKHKWLAWNSGFDARMLEQTCLNTIFLNKNAYYVTAM 130 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 S + + + D Y + + L A R GV + H A+ D Sbjct: 131 VSRIHTSHIDAKAVYDTW-YGEYDAKHQAFKRQSLTIAAARHGVLLEGAHRALADCKMVL 189 Query: 174 FCFDM 178 Sbjct: 190 AVLQK 194 >UniRef50_A6DK72 DNA polymerase III n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK72_9BACT Length = 210 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 20/182 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVE--QLAAADPKAMEINGYY 61 +V+D E TGL + + + + G V + + + I+ Sbjct: 29 DYVVIDCEMTGLKPKQDKLLSIAAVKISQGRIQSQESFYRVIFQEKQKLRDETILIHRLN 88 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E D+ + G D + + +PF Sbjct: 89 HEQISTGSDQI----AVLKEFSDFCQNCIPVGHFFDIDLSFLNPVMP---LPF------- 134 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L K L+ + + +P H+A+GDA +TA F + Sbjct: 135 ----LYPHLDTRLLVKTLQPCPSSIQLNELCDFYNLPSFEAHNALGDATSTACLFLKILS 190 Query: 182 TA 183 Sbjct: 191 EL 192 >UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9J0_9ACTN Length = 1011 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 51/180 (28%), Gaps = 19/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++ +D ETTGL + ++ + ++ G V ++ Sbjct: 49 LESDIVALDTETTGLSHKNDQLTQIAAVKLEEGSVAD-EFTTFVNPSRPIPHNIEKLTNI 107 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 Y + A + D++ + N +FD + + V Sbjct: 108 YSVDVEHA----PTPQTAVARLADFVELDPILAHNASFDRAFIEAA-------QNDTCVS 156 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 W + A ++ L +A G H A D A A + + Sbjct: 157 DTW------IDTLALSRIAFPALTSHKLQDLAYIFGCE-SVTHRANDDCTALAGVWHYIL 209 >UniRef50_A4IMY1 Putative uncharacterized protein n=1 Tax=Geobacillus thermodenitrificans NG80-2 RepID=A4IMY1_GEOTN Length = 242 Score = 112 bits (280), Expect = 6e-24, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 52/183 (28%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++D+ETTG + + G + V+ ++ G Sbjct: 61 PFVIIDMETTGFSPQQGDEILAMAAAKTVNG-LVTGTYMTLVKPEKPIPEHISDLTGIE- 118 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 ++ + A A ++ G + D + + + Sbjct: 119 ---AKDVVFAPPLAEALRTFVPFISAGVLVGYHIGHDLSFLRHVLWRHYRQK-------- 167 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 W R D+ +++ LD G+ RH+A GD A + +L Sbjct: 168 WSWRFVDMQPI----VSLVRHPCPTLDDALACYGIDCPRRHTADGDVEAMVKLWAILLGE 223 Query: 183 AAA 185 Sbjct: 224 LRE 226 >UniRef50_Q11Z63 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11Z63_CYTH3 Length = 183 Score = 112 bits (280), Expect = 7e-24, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 17/182 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +D ET + VG+ V+ G+ + + + ++I+G Sbjct: 3 FTALDFET--ANTHKTSICAVGMAIVEDGKVVKTISKLIKPVPDFYSYWNVQIHGITPDM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 W E++ ++ +T N AFD + T+ + F Sbjct: 61 TADA----PYFIDVWQELKQYIDYSTLVAHNAAFDVGALRSILTTHEVSFPKTDYF---- 112 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + + + E L V + VP+ N H A DA A Sbjct: 113 ------CSCSVSRKVFKEIENHKLSTVCRHIDVPL-NHHEAESDAIGAAQIIIKAGERLG 165 Query: 185 AH 186 A+ Sbjct: 166 AN 167 >UniRef50_Q05FQ3 DNA polymerase III epsilon subunit n=1 Tax=Candidatus Carsonella ruddii PV RepID=Q05FQ3_CARRP Length = 181 Score = 112 bits (280), Expect = 7e-24, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 14/179 (7%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K++I +D+ETTGL + +E+G + V G V H A ++G Sbjct: 2 KRIIFLDVETTGLFVEHGDRIIEIGCVEVINGHLTGRVFHSYFNPEVKITQGAFNVHGIK 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L L + E ++ +T N FD + ++ + + Sbjct: 62 DDFL----LLKPMFYEKINEFIGFINNSTIIAHNAKFDINFINKEIYLTNFKIKKI---- 113 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG-VPVVNR-HSAIGDAAATAFCFDM 178 + L + + + L+ + + + R H A+ DA A Sbjct: 114 --QNYANILDSLLLFRKLYPRKKN-NLNDLCLKFNLIKNKKRIHGALNDAFLLAVLIIK 169 >UniRef50_C6W9X5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W9X5_ACTMD Length = 262 Score = 112 bits (280), Expect = 7e-24, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 13/186 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG----ESLYFVPHITVEQLAAADPKAMEING 59 L+ +DLETT ++ V ++ + G + V + A I+G Sbjct: 14 PLLALDLETTDVEPRRDRIVTASVVVITPGAEGAKPDVRVRTWLADPGVPIPASATAIHG 73 Query: 60 YYERGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 E + + W N FD T++ + + + + Sbjct: 74 ISTEQARAEGRPVGEVVAEVEALLAELWTASTPLCAFNAPFDLTMLDAELLRHHGRSLRV 133 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + V + L+ L AV E GV + H++ GDA A A Sbjct: 134 SGPVVDPLCVDR-------ALDPRRVGKRTLGAVCEHHGVRLEGAHTSAGDALAAARLAW 186 Query: 178 MLRHTA 183 L Sbjct: 187 KLARVH 192 >UniRef50_C0YRX4 Possible DNA-directed DNA polymerase III n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YRX4_9FLAO Length = 184 Score = 112 bits (280), Expect = 7e-24, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 22/181 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYYE 62 +D ET ++ + E+G+ V + + + + ++G Sbjct: 2 DFCAIDFET--ATHEKSSACEMGICVVQDSKIVETKTWLIKPPSFPYFSKFNIAVHGIQP 59 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + W E QD + G+ N FD++++ Y M Sbjct: 60 EDVKDA----PTFDEIWYEAQDMMYGSLMIAHNAGFDASVLRGCLEHYGM---------- 105 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC----FDM 178 + +L L + K + + GL +AE + H A DA A F+ Sbjct: 106 FTPKLNYLCSIQLAKKSWNYLPKYGLKPLAEYHKIDFT-HHRAGADAEVCAKISLLAFEK 164 Query: 179 L 179 L Sbjct: 165 L 165 >UniRef50_C6XW17 Exonuclease RNase T and DNA polymerase III n=74 Tax=cellular organisms RepID=C6XW17_PEDHD Length = 328 Score = 112 bits (280), Expect = 7e-24, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 19/184 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + L DLETTG++ VE+ +L S + + A I+G Sbjct: 5 LKRPLAFFDLETTGVNVGADRIVEIAILKAMPDGSELIKT-MRINPEMPIPLYASLIHGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 Y+ + E E+ D++ AG N FD ++ + + + F Sbjct: 64 YDEHIANE----PIFKEVATELADFIGDADLAGYNSNRFDIPVLLEEFLRAGVDF----- 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDM 178 + + D+ E L A + ++N HSA D AT Sbjct: 115 -DMSDRKFVDVQNI------FHQMEQRTLRAAYKFYCNKDIINAHSAEADITATYQVLLA 167 Query: 179 LRHT 182 Sbjct: 168 QIER 171 >UniRef50_UPI000185C08E DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C08E Length = 195 Score = 112 bits (280), Expect = 8e-24, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 11/177 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEINGYY 61 + VD+ETTGLD + +G + V+ + + + + + ++ ++G Sbjct: 21 WLAVDVETTGLDPSKDQLLSIGWVAVEGRDIVLEESGHLIIRPEREEVSVGESATVHGLT 80 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + VA G++ + LRG + + Y + V Sbjct: 81 DDMVATGV----EAEVAVGKLLEALRGRKLLAHYARMEVGFLDPLCRKYFDARFDVPVAD 136 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + L ++ ++ G+P H A DA A A + Sbjct: 137 TMTREYDAI----LRANREPVRDELRLWSLCDKYGIPRFKAHHAFNDALACALVWLA 189 >UniRef50_A6DBG1 DNA polymerase III subunit epsilon n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBG1_9PROT Length = 248 Score = 111 bits (279), Expect = 8e-24, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + ++DLE +E+G + + + + + ++ G + Sbjct: 65 EYTILDLEVNNSKPKEGQIIEIGAVKLKNLVPIDEFSFLIYAK--DIPRYVTKVTGINNQ 122 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E + + +L + FD +A+Q + + + Sbjct: 123 MLKNEKSQ----KEILEKFRLFLGDSVIVAHAADFDFNFLAKQFEKEDLGY-------LL 171 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L + GL + E L +P H A+GDA T F Sbjct: 172 NPHLCTITLAKKTLKAN----RYGLKYLKEELNLPEEIDHRALGDARTTTRVFLKSLENL 227 Query: 184 AAHL 187 + Sbjct: 228 PKSI 231 >UniRef50_Q2Q0H1 Putative DNA polymerase type III, exonuclease domain n=1 Tax=uncultured organism HF70_19B12 RepID=Q2Q0H1_9ZZZZ Length = 270 Score = 111 bits (279), Expect = 8e-24, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 59/188 (31%), Gaps = 22/188 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI---TVEQLAAADPKAMEINGY 60 +++ D ETTGL+ ++ + G + ++ +M ++G Sbjct: 8 KVLGFDTETTGLNPRKDRILQYAFI----GRDVDGSSVCQVELIDPGIKIPEASMNVHGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + ++ + + G G N FD + + + Sbjct: 64 SNEDVTGRG----SFGMHSNDIAELIDGAIIVGHNINAFDWRFIEFEFMRVGEAVPSP-- 117 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L D A G L + +R G+ + HSA DAAAT + Sbjct: 118 -----YALVDTLELARGLRI---PGRHTLGHLCKRYGIGLDRAHSADADAAATLILLWKM 169 Query: 180 RHTAAAHL 187 + L Sbjct: 170 IEGNQSIL 177 >UniRef50_A7I1F1 DNA polymerase III subunit epsilon n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I1F1_CAMHC Length = 262 Score = 111 bits (279), Expect = 9e-24, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 55/182 (30%), Gaps = 19/182 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 VD+ET G D +E+G + V E L T + +E+ G + Sbjct: 72 EADFCFVDIETNG-GIDKGQIIEIGAIKVRAKEIL--NTFKTFVYASNIPENIVELTGIH 128 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + +L + F N FD ++ G Sbjct: 129 TNDLKNA----PHLSNVLENFRLFLGDSVFVAHNVKFDYGFISESLQKIGF-------GG 177 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + R+ + + GL ++ E LG+ H A DA + F Sbjct: 178 LLNRRIDTIDLAKRTIA----AQKYGLSSLKELLGIENE-HHRAFSDALSCYEIFKFCTQ 232 Query: 182 TA 183 Sbjct: 233 KL 234 >UniRef50_C2G0Y5 DNA polymerase III, epsilon subunit n=8 Tax=Bacteroidetes RepID=C2G0Y5_9SPHI Length = 203 Score = 111 bits (279), Expect = 9e-24, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 17/186 (9%) Query: 3 KQLIVVDLE-TTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E T VG++ VD G + + ++G Sbjct: 4 QSFIAIDFELAT---AAYNSVCSVGIVRVDQGVITDEFYSLVKPPKNEYMWQTTRVHGIK 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++D L+ N FD ++++ + + L + Sbjct: 61 PKDTADA----PTFEEIYPKIKDLLQNKKMVAHNEKFDREVLSKTMKACGLDYRELHLPV 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 +W + + L+ E +G+ + N H A+ DA A AF + Sbjct: 117 MWEC--------TSKIYRDKGFKKTKLNLCCEIMGIDL-NHHEALSDAKAAAFLYLKQNE 167 Query: 182 TAAAHL 187 L Sbjct: 168 VTQELL 173 >UniRef50_A3EQH5 DNA polymerase III, epsilon subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3EQH5_9BACT Length = 265 Score = 111 bits (279), Expect = 9e-24, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGL-DYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYY 61 ++ +D+ETTGL A +E+G + + G+ L T+ + A P +ING Sbjct: 2 KVTFLDVETTGLLRDSRARIIELGFSSWENGKLLRKTS--TLIKGADIVPDNISKINGIT 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + W ++ ++G+ N AFD +V R+ + Sbjct: 60 TEMLKDA----PRFEEVWKSIKGDIQGSLLVAHNLAFDVGMVNRELI-------LADRIP 108 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + L + + L +A+ +G+ N H A+GD L Sbjct: 109 LGNMGIDTLP---LSRKMLPELSSYRLGEIAKHMGILNENPHRAMGDLETLEKIVSNLLG 165 Query: 182 TAAAHL 187 + Sbjct: 166 SLPGTF 171 >UniRef50_P41060 Uncharacterized exonuclease CP81 n=12 Tax=root RepID=CP81_BP186 Length = 194 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 60/189 (31%), Gaps = 14/189 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + I +D ETTGL D A VE+ L++ L V+ +A I+G Sbjct: 16 LEDDRIFIDTETTGLG-DDAEIVEICLIDSAGFIMLN----TLVKPTKPIPAEATAIHGI 70 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + G V F N +D+ ++ + Y + Sbjct: 71 TDEMV----MYAPTWKDIHGAVASLFFEYGFVIYNADYDTRLIYQTAKLYGLENDGFCYF 126 Query: 121 RVWHHRLADLAAYAAGK---LNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCF 176 + + YA + + L A GV V H A+ D T Sbjct: 127 -LNERSACAMMLYAEYRGEPGRFKGYKWHKLVDAAAHEGVSVEGKAHRALADCRMTLGII 185 Query: 177 DMLRHTAAA 185 D L AA Sbjct: 186 DALAKGGAA 194 >UniRef50_Q3ILF6 Putative DNA polymerase, exonuclease activity n=2 Tax=Alteromonadales RepID=Q3ILF6_PSEHT Length = 207 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++ +V+DLE TGLD V + + ++ + + ++ +G Sbjct: 21 LKQRYLVIDLELTGLDAKQHEIVSLAWVVIENQCIKMSQSQHLINKEVKNLAQSPVYHGI 80 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + Q + + N D + ++ P Sbjct: 81 NNDNVAAG----QSLHSILEHLSEHFNDCILVFHNAMLDWGFLKPALKNANITTRP---- 132 Query: 121 RVWHHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + +L E L+ R +P + H A+ DA ATA F Sbjct: 133 ----KLILCTLQIEKKRLQHQGVEIKQDDLTLNECRNRYELPSYHCHHALTDAQATAELF 188 Query: 177 DMLRH 181 H Sbjct: 189 LAQCH 193 >UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus thermophilus RepID=Q746C7_THET2 Length = 1649 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 61/186 (32%), Gaps = 18/186 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +DLE T D A +EV + GE F ++ ++ D + ++ G Sbjct: 9 VALDLEATSTDPSEAEVLEVAAV---DGEGRVFHRYLATQRPLPPDHEVFQLTGIPYEEY 65 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A E+ +L G G N +D ++ R +P W Sbjct: 66 EAKKVAP---KEALEELLAFLGGRPLLGHNLLRYDLPLLQRHLEEAGLPR--------WQ 114 Query: 125 HRLADLAAYAAGKLNIDPTE--LEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLRH 181 D A P L + L G P+ H A+ DA AT F L Sbjct: 115 GEALDTLRLAHLLFPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQATLAVFHRLLD 174 Query: 182 TAAAHL 187 L Sbjct: 175 RGRRAL 180 >UniRef50_C8NL81 DNA polymerase III, epsilon subunit n=7 Tax=Corynebacterium RepID=C8NL81_COREF Length = 227 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 17/190 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA--ADPKAMEINGYY 61 L+ VD+ETTGL D V +G + V V + + I+ Sbjct: 44 PLLAVDVETTGLKPDEHQIVSIGWVPVTGRVIELGGAGYRVIRGTEGFTVGSSAVIHRLT 103 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLT 118 + L A E+ L+G + ++ + Y + + Sbjct: 104 DDELAAGV----DLEDALVELLAALKGRVLLAHFAPMEQNFLSAACLKYFDAPLQLPVVD 159 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + ++ Y E L V R G+P + H A+ DA A A + Sbjct: 160 TFAIERRHMEKMSTY-------PRGEDLRLARVRTRYGLPQYSNHQALTDALACAELYLA 212 Query: 179 -LRHTAAAHL 187 +R A+ L Sbjct: 213 QIREVNASAL 222 >UniRef50_Q1QDN3 Exonuclease n=3 Tax=Psychrobacter RepID=Q1QDN3_PSYCK Length = 203 Score = 111 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 62/182 (34%), Gaps = 15/182 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYY 61 +Q + +D E TGL+ + V ++++ + H+ + + I+G Sbjct: 33 EQWVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVMPEGDTIVIHGLR 92 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA---RQRVTYSMPFSPLT 118 + G + ++ G P D + + + +P + Sbjct: 93 TADVEHAM----SYDEMLGLLLPFISNRPLVGFCPQIDVGFLNPLVKHYMGTHLPNEIID 148 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + ++ R+ + + + L+++ +P + H A DA TA F Sbjct: 149 IRPLYSRRMMGRSQGLSSQAQH-------LNSILAHYNIPELGTHDAYNDAIMTAMAFLH 201 Query: 179 LR 180 +R Sbjct: 202 MR 203 >UniRef50_Q04DG0 DNA polymerase III, epsilon subunit or related 3'-5' exonuclease n=3 Tax=Leuconostocaceae RepID=Q04DG0_OENOB Length = 177 Score = 111 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 18/183 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D ET + +A V +GL V + + ++ + EING Sbjct: 3 FLAMDFETASSEPWSA--VSLGLTIVRDNQI-AQNWYSLIKPETSFSYWNTEINGLT--- 56 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + L + W ++++ G N FD+ ++ + Y + Sbjct: 57 -ADDVLDSPKFPEVWADIKNLYDDYPVVVGHNVRFDNNVLKQTLKYYGLKTP-------- 107 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 R L + + LD V LG+ + + H+A DA A+A Sbjct: 108 --RYLSLDTVSLPRKFQPGMVNHKLDTVVSDLGLFLEHHHNASDDAQASAQILIYEIEHF 165 Query: 184 AAH 186 Sbjct: 166 GEE 168 >UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group RepID=Q3B5G9_PELLD Length = 197 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 63/187 (33%), Gaps = 9/187 (4%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 K+++ DLETTG+D D ++ L G F + + A + +A+ ++G+ Sbjct: 2 KKVLWFDLETTGIDPDRHGIIQFAGLAEIEGVVAESFEIKMQPHEGAMIEDEALAVSGFS 61 Query: 62 ERGLYREALTEQQTAVAWGEV------QDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 + + G + + AG N FD ++R Y Sbjct: 62 REQIASFTPHAEAYKAIDGFLARHVSRFERNDKFYPAGYNVRFDLDFLSRMFRRYDQYGL 121 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + L + L V E LGV + N H A+ D AT Sbjct: 122 GSFINWRSLDPQPILNIME--YMGRLSLPNHKLQTVCEHLGVRLENAHDALSDIKATREL 179 Query: 176 FDMLRHT 182 ++L Sbjct: 180 MELLMEH 186 >UniRef50_B8J155 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J155_DESDA Length = 176 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 21/176 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ET+G Y VGL ++ G ++ + ++ EI+G L Sbjct: 10 VAIDFETSG--YAAHSACAVGLARIEDGRVT--EQFYSLVRPPSSRVLFTEIHGLTWPML 65 Query: 66 YREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 W +++ +++G N +FD ++ Sbjct: 66 KNA----PVFGDVWPQMESFMKGAGVLLAHNASFDRRVLLACCREAGAGVPEQHF----- 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + ++ + L+ V E G+ + + H A DAAA A + LR Sbjct: 117 -----LCTLKGARRSLP-LPSKKLNHVCEHFGIALEHHH-AGSDAAACAEVYLHLR 165 >UniRef50_B4TI94 Exonuclease n=2 Tax=root RepID=B4TI94_SALHS Length = 198 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 14/183 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTGL D A VE+ +++ L V+ +A+ I+G + Sbjct: 25 LFIDTETTGLG-DDAEIVEICIIDSHGFILLN----TLVKPTKPIPDEAIAIHGITNEMV 79 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 G V++ +R F N +D ++ + P + H Sbjct: 80 AYA----PAWTDICGAVEELIRRFGFVIYNADYDLRLIRQTYALNGRPSEGAPWM-LAAH 134 Query: 126 RLADLAAYAAGK---LNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLRH 181 + + YA + + L A GV + H A+ D T L Sbjct: 135 SVCAMKLYAEYRGEPGKYHGYKWHKLVDAAAHEGVVIEGKAHRALADCKMTLGVIKALAQ 194 Query: 182 TAA 184 A Sbjct: 195 GGA 197 >UniRef50_UPI0001BC4EA4 exonuclease n=4 Tax=Fusobacterium RepID=UPI0001BC4EA4 Length = 186 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 68/188 (36%), Gaps = 12/188 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 +++ +D ETTGL Y + +++ + GE + + +A+ I + Sbjct: 2 KILYLDTETTGLTY-RSTIIQLAAIVEIDGEIKETINLYCAPFPDSDISEEALSITKFTR 60 Query: 63 RGLYREALT---EQQTAVAWGEVQDWL---RGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 +++ Q G+ D G N FD ++ + F Sbjct: 61 EEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERF-- 118 Query: 117 LTVGRVWHHRLADLAAYAAGKLN--IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + + LA K+ + TE L+ + + +P+ N H+A+ D A Sbjct: 119 IASYIDFKNEFDTLAFTKCLKILGRLPQTENNKLETLCQAFQIPLENAHNALADTIAAKD 178 Query: 175 CFDMLRHT 182 + L++ Sbjct: 179 LYHYLQNK 186 >UniRef50_A5U937 DNA polymerase III subunit epsilon DnaQ n=20 Tax=Mycobacterium RepID=A5U937_MYCTA Length = 329 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 56/181 (30%), Gaps = 16/181 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + V+D+ET+G A + + +L +D L + DP ++G Sbjct: 12 QDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP--KVDPGPTHVHGL 69 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + Q A GEV D LRG T N AFD +A + V Sbjct: 70 TAAMLDGQ----PQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFV- 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + L+ +A GVP H A D Sbjct: 125 ---------MCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAAL 175 Query: 181 H 181 Sbjct: 176 E 176 >UniRef50_Q30Q47 Exonuclease n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30Q47_SULDN Length = 266 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 19/179 (10%) Query: 1 MAK-QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M++ +VD+ET G + +E+ L V G + ++ + +P EI G Sbjct: 66 MSESTFCIVDIETNGSKIEKHQIIEIAALKVKNGLVVER--FESLVECHEINPHITEITG 123 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E + + + +L F + FD ++ +P Sbjct: 124 IST----NETIDAPNLKKVMYDFRTFLGDAVFIAHDVKFDYKFISLSMQKIGLPPLLNRS 179 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFD 177 + +Y L + + P H A+ D T F Sbjct: 180 LCSLSLAERTIESY-----------RYALSYLNTIFNLHPEATHHRAMSDVITTYELFK 227 >UniRef50_D0JBJ5 DNA polymerase III subunit epsilon n=1 Tax=Blattabacterium sp. (Blattella germanica) str. Bge RepID=D0JBJ5_BLASB Length = 256 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 60/186 (32%), Gaps = 19/186 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + + D+E TG++ +E+ +L + + V P++ I+G Sbjct: 5 LHRPICFFDIEATGINIGKDRIIEISILKIFPNGNQEDKTW-LVCPGIPIPPQSTAIHGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + + + AG N FD I+A + + + F Sbjct: 64 KNEDVEGKLK----FKDVAFSIFKMIENTDLAGYNSNRFDIPILAEEMLRAGISF----- 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG-VPVVNRHSAIGDAAATAFCFDM 178 + H+ D+ ++ E L A + ++ HS+ DA AT Sbjct: 115 -DIKKHKTIDV------QVIFHKMEPRTLSAAYKYYCSKELIKAHSSKEDAFATYEILLS 167 Query: 179 LRHTAA 184 Sbjct: 168 QLEKYE 173 >UniRef50_A6DRG8 Putative exonuclease n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRG8_9BACT Length = 165 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ET V ++ V+ G + + + ++++G R Sbjct: 2 DFVAIDFET--ATAKRNSACAVAIITVEKGVIVDEYSELIQPPNNEYSWRNIDVHGIEPR 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ + E++ L G N +FD +++ R Y + ++ L V W Sbjct: 60 H----TMYKEDFEDLYPEIRKRLTGKLVVAHNESFDRSVMTRSMEYYDLDYADLGVADRW 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + Y A + L+ + + G+P+ H A+ DA A A + ++ Sbjct: 116 ---VCTVKLYKAQ-----GFKPAKLNILCDHFGIPLK-HHDALSDARACAELYKRVQEI 165 >UniRef50_A9RDT8 Predicted protein n=6 Tax=Eukaryota RepID=A9RDT8_PHYPA Length = 1960 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 23/194 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +IV D+ETTG + VE+ ++ G+ + Q + ++ Sbjct: 249 PTIIVFDIETTGFLKPGSKIVELACRDIAGGDCSTLETLVNPYQPVPI--ASTAVHKITS 306 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNT-------FAGSNP-AFDSTIVARQRVTYSMPF 114 + R+ + D++ N FD + ++ SM Sbjct: 307 EMVNRDDI--PSWTEVMTAFVDFVESRRIGNSDVILVAHNGRRFDVPFIMKECYECSMEI 364 Query: 115 SPLTVGRVWHHRLADLAAYAAG--KLNIDPTELEGLDAV-AERLGVP-VVNRHSAIGDAA 170 H D A K T+L L + + +P + + H A D Sbjct: 365 P-------SHWYFIDTIDLAKAMLKKRFGKTKLYNLQFLYYDCYKLPRLEDAHRAGVDVD 417 Query: 171 ATAFCFDMLRHTAA 184 A F L Sbjct: 418 MLASVFGKLLMELE 431 >UniRef50_C5SA67 Exonuclease RNase T and DNA polymerase III n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SA67_CHRVI Length = 225 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 60/179 (33%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 + + +DLETTGLD L + VG + + E H V + + I+ + Sbjct: 40 EYLAIDLETTGLDQRQDLILSVGYVVLHGPEIDLSTARHHLVRIDRSIPEASAVIHQITD 99 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 T ++ GEV L G + + +++ +P + Sbjct: 100 DQAA----TGRELEDVLGEVLAALTGRVMIAHHAGIEQGFLSQACQRCWGRGLPLRLVDT 155 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H L + L A+ R +P H+A+ DA + A F Sbjct: 156 QTLAHRTL-------ERRQIPFKASDLRLHALTSRYNLPRHGAHNALSDALSAAELFLA 207 >UniRef50_C6P477 DNA polymerase III, epsilon subunit n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P477_9PROT Length = 235 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 15/176 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +++VVD+ETTGL+ T + +G + V G + ++Q ++D + + ++G Sbjct: 42 RVVVVDVETTGLNLITDTLISIGAVAVVNGRIALGDSFSVVLKQQESSDKENILVHGISS 101 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 A ++L + + AFD T++ R Y +G Sbjct: 102 TAQRDGVDPV----EALLTFLEYLGKSRLIAFHVAFDETMIRRAMRQY--------LGLS 149 Query: 123 WHHRLADLAAYAAGKLNIDPTELEG-LDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + H DLA LN E LD R + + RH+A+ DA ATA F Sbjct: 150 FKHEWLDLAYVMPA-LNRSLMENHRVLDDWIGRFNIHIEARHNALADALATAQLFQ 204 >UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 Tax=Haliangium ochraceum DSM 14365 RepID=D0LN23_HALO1 Length = 180 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 61/181 (33%), Gaps = 13/181 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAA---DPKAMEING 59 + L+ +D ETTGLD + +E+ + V + + DP+A+E+NG Sbjct: 2 QPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNG 61 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 Y R A E+ L G AG N AFD + L Sbjct: 62 YRRRAWADAV----SLGDAMAELAPMLEGAVLAGHNVAFDRRFLEAAWDCVGHRPENLD- 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 H D AA A L + L V LGV H A D A+ L Sbjct: 117 -----HHALDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDVRASLGVAQRL 171 Query: 180 R 180 Sbjct: 172 L 172 >UniRef50_C9PB04 DNA polymerase III epsilon subunit n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PB04_VIBFU Length = 222 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 6/182 (3%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYY 61 + L+ +D+ET+GLD + V +G + + + + DP+ + ++ Sbjct: 30 QPLLSLDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQNDPQQVVLHHIM 89 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A A + L+G + + + P P+ Sbjct: 90 PQMQRQGI----PLAQAIELLFTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDLPIVWLD 145 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 A A YA + L V +R +P H A+ DA ATA + ++ Sbjct: 146 TLKIEQAY-AQYAPYNMPHSNANDWRLSTVRKRYHLPAYQAHHALSDAIATAELYLAQQN 204 Query: 182 TA 183 Sbjct: 205 RL 206 >UniRef50_Q7MCI1 DNA polymerase III, epsilon subunit n=6 Tax=Vibrio RepID=Q7MCI1_VIBVY Length = 239 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 13/176 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ETTGLD + +G++++ G +L I + A ++ ING + Sbjct: 53 FLALDFETTGLDAKHDKILSIGMVDLTLEGINLSSAEEILLNHGAYIKAESARINGLTPQ 112 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + +G + + + + + ++ Sbjct: 113 ALEQGC----SLEQGMMRLFERAQGKVLLAHSAIIEQGFLQAFAQQH------FQLAKLP 162 Query: 124 HHRLADLAAYAA--GKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 H + L LD + +P + HSA DA A A F Sbjct: 163 CHFVDTLQIEKRFSYAGKSGQRSSFQLDDLRRCYHLPDYHSHSAASDALACAELFI 218 >UniRef50_Q47TJ3 DNA polymerase III, epsilon subunit n=10 Tax=Actinomycetales RepID=Q47TJ3_THEFY Length = 250 Score = 109 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 52/162 (32%), Gaps = 5/162 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ D+ETTG++ + V ++ S V P+A+ I+G Sbjct: 15 PLVGFDIETTGINLEQDRVVTAAIIETAADGSQRTRRTWLVNPGVEIPPEAVAIHGISTE 74 Query: 64 GLYREALTEQQTAVAWGEVQDWL--RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ + + G N FD TI+ R+ Y + Sbjct: 75 LAVADGIPAPVAVAEITDLLEQVLQSGTPLVIMNAPFDLTILDRECRRYGV-VPLSERLD 133 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 + L ++ L+A+ GVP H Sbjct: 134 TVAPVIDPLILDRH--IDRYRRGKRTLEALCAHYGVPYDGSH 173 >UniRef50_A6W3F5 Exonuclease RNase T and DNA polymerase III n=2 Tax=Marinomonas RepID=A6W3F5_MARMS Length = 236 Score = 109 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 11/181 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY--FVPHITVEQLAAADPKAMEIN 58 L+ +DLETTGLD + +GL+ + + + + + + + +++ I+ Sbjct: 47 QDTPLLALDLETTGLDPSQDEIISLGLIPL-NHKIIRCQGAKYWMAKPECSLNAESVTIH 105 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV-ARQRVTYSMPFSPL 117 L + E+ L A + + Y P Sbjct: 106 EITHSELEEA----PRLHAILDEILLALTHQVIVVHCVAIERQFLLKASMKIYGYPLYFP 161 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + + LDA +R +P H A+ DA ++A Sbjct: 162 ---VLDTMDIERQVTFKPWWKRFGRRPSLRLDACRQRYKLPRYKAHHALTDALSSAELLQ 218 Query: 178 M 178 Sbjct: 219 A 219 >UniRef50_Q2BJ82 DNA polymerase III subunit epsilon n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ82_9GAMM Length = 209 Score = 109 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 73/182 (40%), Gaps = 16/182 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 +++ +D ETT LD V +G + + + L I ++ + +++I+ Sbjct: 31 DEVVSLDCETTSLDVKQGEIVSIGAVKIKGRKVLSSDRLDIKLKPPKSLTGDSIKIHKIR 90 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLT 118 E L A +V +++ G +D ++ + + +P + Sbjct: 91 ESDLAGGI----DIEDALEQVLEFVGNRPILGYYVNYDIRMLDKFIRPQFGFGLPNKAIE 146 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + V+H + ++ D ++++L +P++ RH+AIGDA A + Sbjct: 147 LSHVYHDIIKW--------KSVGGNVDLRFDTISKQLDIPMLERHTAIGDALTVALMYVR 198 Query: 179 LR 180 L+ Sbjct: 199 LK 200 >UniRef50_C5YG62 Putative uncharacterized protein Sb06g028980 n=1 Tax=Sorghum bicolor RepID=C5YG62_SORBI Length = 283 Score = 109 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 54/190 (28%), Gaps = 21/190 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +V DLETTG + VE L ++ G+ + A E+N Sbjct: 81 QPGTFLVFDLETTGFFHVDNRIVEFALRDLSGGK--DCTFQTLINPERDVPIYASELNNI 138 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNT-------FAGSNPA-FDSTIVARQRVTYSM 112 + + + + ++R + N FD + ++ S Sbjct: 139 TTELV--CRPDVPRFSDVLPILLAYVRSRQAPGKPVLWIAHNAKGFDVPFLNQEFDRCSA 196 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELE-GLDAVAERLGVPVVNR-HSAIGDAA 170 D A ID + L A+ ER G+ H A+ D Sbjct: 197 QVP-------SDWLFVDSLRLARKLKKIDGKKNLVNLVALGERYGLSSEGPSHRAMPDVE 249 Query: 171 ATAFCFDMLR 180 A + Sbjct: 250 ALCNILPKIT 259 >UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales RepID=A6VXX3_MARMS Length = 484 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 56/196 (28%), Gaps = 15/196 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEINGYY 61 D ETTG D P++ + D + + + + P+A + G Sbjct: 9 FFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLTGIS 68 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFSPLTV 119 + RE L E + A G N FD +V + P++ Sbjct: 69 PQDANREGLCEAEFMQAVEAELSQPGTCAL-GYNTIRFDDEVVRYGFYRNFIDPYTREWQ 127 Query: 120 GRVWHHRLADLAAYAAGKLNI--------DPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 + DL D L+A+ + G+ H A+ D Sbjct: 128 NNCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKANGIAHEQAHDALSDVYG 187 Query: 172 TAFCFDMLRHTAAAHL 187 T L + L Sbjct: 188 TIEI-AKLIRSKQPKL 202 >UniRef50_A4WYE4 Transposase and inactivated derivatives-like protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WYE4_RHOS5 Length = 282 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 17/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+D+ET + + ++GL+ + G + H ++ DP + I+G Sbjct: 2 KFVVLDVET--ANPRMSSICQIGLVTFEGGVEVAAESH-LIDPEDHFDPVNVAIHGIT-- 56 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E +G V D G A FD ++R +++P Sbjct: 57 --AAAVVGEPTFREVYGRVCDLTAGTVVACH-THFDRVALSRVCELHALP--------TL 105 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D A A GL +A G+ H A+ DA A Sbjct: 106 SCSWLDTARVARRAWVEFSKSGYGLSNLARHFGITF-QHHDALHDARAAGLILARAIEET 164 Query: 184 A 184 Sbjct: 165 G 165 >UniRef50_Q89MS5 Blr4117 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89MS5_BRAJA Length = 223 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 15/184 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYY 61 + +V+D ETTGL+ T V + + + L V + + +A++I+ Sbjct: 30 DEFVVIDCETTGLNVRTDNVVAIAAIKIRGNRILTSARFEAIVHPDSELEAEAIKIHRLR 89 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPLT 118 + ++ G FD ++ + V +P + Sbjct: 90 RSDVEA----SPIVWKVLPGFLHFIGPRPLIGYYVDFDIAMLDKYILPLVGIELPNERIE 145 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 V R+++ R G + A+ L +P + +H A DA TA F Sbjct: 146 VSRLYYER-------KYGNAPPNTEVDLSFAAILHDLCIPPLGQHDAFNDALMTAMMFLQ 198 Query: 179 LRHT 182 LR Sbjct: 199 LRDL 202 >UniRef50_C7RVE9 Exonuclease RNase T and DNA polymerase III n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RVE9_9PROT Length = 469 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 17/185 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +L + LETTG + ++G+L + V ++NG Sbjct: 3 PARLAFIGLETTGANPLRDRITKIGVLEAEGDRV--STWSTLVNPQRPIPEFIQQLNGSR 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A E+ D L G F + F+ V R+ F Sbjct: 61 DATVADA----PTFAQVAAELADRLHGRLFIAHHARFNYAFVKREFQRLGKSF------- 109 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 R L + + L+++ R + A+ A + +L+ Sbjct: 110 ----RADVLCTVRLSRKLFPEHQKHHLESLMVRHDLTTGVHSGALAAAHLLGQFWCVLKR 165 Query: 182 TAAAH 186 Sbjct: 166 ERGEE 170 >UniRef50_Q6LGI0 Putative DNA polymerase III n=1 Tax=Photobacterium profundum RepID=Q6LGI0_PHOPR Length = 236 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 9/180 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ETTGL+ + +G++N+ T L I + ++ +IN + Sbjct: 51 FVAIDFETTGLNCQQDKILSIGVVNLTTDMIELASSEEIYIRHGEFIKAESAQINEITPK 110 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L++ A + + ++G + + L + Sbjct: 111 QLHKGV----DIDTAIDWLLERIQGKIVLAHCANIEKQFIESYLK----DTYQLNTFPCY 162 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + + LD + + +P HSA DA A A F + Sbjct: 163 FIDTLQLEKHHSYAGKSNQHTSYQLDDLRQYHNLPAYYSHSAASDAVACAELFLVQVKKL 222 >UniRef50_D1XX28 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1XX28_9BACT Length = 894 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 13/186 (6%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF--VPHITVEQLA--AADPKAMEIN 58 ++++V D ETTGLD T +E+ + + G+ + +I ++ K + Sbjct: 510 QEIVVFDTETTGLDVFTDDIIEISAIKIKEGKIVGEPLDLYIYTDKPILQKLGTKENPLY 569 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 Y + L L + A + +++ +T G N +D I+ Y Sbjct: 570 EIYHKKLASGELLKAN--DALNKFIEFVDNSTLIGHNINYDYHILDNCLKRY-------A 620 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + +H + +L L+ + ER + +N H +I D AT + Sbjct: 621 NDCMDNHSYKYFDSLKLIRLLEPSLRSYKLEYLLERFQLEGINSHQSIDDVKATISLINY 680 Query: 179 LRHTAA 184 A Sbjct: 681 CADKAQ 686 >UniRef50_Q2QCR8 Putative uncharacterized protein n=1 Tax=Pseudomonas sp. CT14 RepID=Q2QCR8_9PSED Length = 197 Score = 109 bits (273), Expect = 5e-23, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 9/175 (5%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYR 67 +D ETTG+ D E+ +L+ L + +A I+ + Sbjct: 16 LDTETTGVG-DGDEVCEITILDASGTPLLN----TLIRPTQPIPAEATGIHRITNDMVA- 69 Query: 68 EALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRL 127 T + + G T N +FD ++++ + + L Sbjct: 70 ---TAPAWPEIAEQYASIVSGRTVVAYNASFDERLLSQTHQRHGLVAPALATACAMLLYA 126 Query: 128 ADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + G+ L A GV H ++ DA T L Sbjct: 127 EWHGEWVEGRYGAWQWRWIKLIEAARACGVLEDGAHRSLADARMTLGVLRYLHKR 181 >UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate division TM7 RepID=A5KSP8_9BACT Length = 476 Score = 109 bits (273), Expect = 5e-23, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 50/199 (25%), Gaps = 13/199 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEI 57 MA+ DLET+GLD ++ F + + P A+ + Sbjct: 5 MAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPSPDAVMV 64 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSP 116 G + + E + E + + T +N FD + P+ Sbjct: 65 TGITPQKTHEEGIAEAEFIKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNFHDPYEW 124 Query: 117 LTVGRVWHHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSAIGD 168 L D+ L+ + + H A+ D Sbjct: 125 AWKDGRSRWDLLDVVRMTRALRPGGIVWPVDKSDKPTNRLELLTSENNLEHSQAHDALSD 184 Query: 169 AAATAFCFDMLRHTAAAHL 187 A + L Sbjct: 185 VYALIAI-TRMVRDKQPKL 202 >UniRef50_C7LT45 Exonuclease RNase T and DNA polymerase III n=4 Tax=Bacteria RepID=C7LT45_DESBD Length = 177 Score = 109 bits (273), Expect = 5e-23, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 19/178 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ + +D ET D VGL V GE + + + + P + ++G + Sbjct: 4 SRAYVAIDFET--ADSCRDSACAVGLTKVQGGEIVDRLYGLIRPPRSRFSPFCVNVHGIH 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + W E +L + A N +FD +++ +P L Sbjct: 62 WSDVKDA----PAFREFWIENAGFLEGADFLAAHNASFDRSVLGACCTMAGLPAPSLP-- 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 A + N+ PT L V LG+ + N H A DA A A Sbjct: 116 ------FVCTVELARNQWNLRPT---KLPDVCRHLGLDL-NHHHAGSDAEACARIVMA 163 >UniRef50_Q682U6 Putative uncharacterized protein At5g26940 n=3 Tax=Arabidopsis thaliana RepID=Q682U6_ARATH Length = 316 Score = 109 bits (272), Expect = 6e-23, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 52/189 (27%), Gaps = 24/189 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +IV DLETTGL +E+ ++ G + T+ I+G Sbjct: 110 TVIVSDLETTGLHRKNERIIEIAAQDIAGGG---YSTFQTLVNPGVVPITNAHIHGIRND 166 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN-------TFAGSNPA-FDSTIVARQRVTYSMPFS 115 + + ++ N FD + + S Sbjct: 167 MV--CRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIP 224 Query: 116 PLTVGRVWHHRLADLAAYAAG--KLNIDPTE-LEGLDAVAERLGVPVVN-RHSAIGDAAA 171 + L D A K + L+A+A+ + H A+ D Sbjct: 225 H-------NWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLL 277 Query: 172 TAFCFDMLR 180 + F L Sbjct: 278 LSKVFQKLT 286 >UniRef50_Q6UAU3 Gp39 n=1 Tax=Klebsiella phage phiKO2 RepID=Q6UAU3_9CAUD Length = 202 Score = 109 bits (272), Expect = 6e-23, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 21/187 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTGL D +E+ ++N+ GE L V+ P+A +IN + Sbjct: 22 VIIDTETTGL-MDFDEIIEITIINMR-GEILLNS---LVKPSRPIPPEATKINHITNEMV 76 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS---------- 115 + + V + + N +FD+ ++ + + Sbjct: 77 ADA----PTWSDVFPAVLKIIWKYKWLAWNSSFDARLMVQSCLKTWFFDDLKPHRITSII 132 Query: 116 -PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + + D Y + + L A R GV H A+ D Sbjct: 133 MAIETRHIDAKAVYDQW-YGEFDEKRKNFKRQSLATAAARHGVSTAGAHRALADCLMILG 191 Query: 175 CFDMLRH 181 + + Sbjct: 192 VLNQICQ 198 >UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=EX1_ECOLI Length = 475 Score = 109 bits (272), Expect = 7e-23, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 50/200 (25%), Gaps = 15/200 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEI 57 + D ET G P + + D+ ++ + P A+ I Sbjct: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + + E A + + +N FD + Sbjct: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD-PYA 125 Query: 118 TVGRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIG 167 + + R L A L+ + + G+ N H A+ Sbjct: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 Query: 168 DAAATAFCFDMLRHTAAAHL 187 D AT L T L Sbjct: 186 DVYATIA-MAKLVKTRQPRL 204 >UniRef50_D2Q9U9 DNA polymerase III, epsilon subunit n=2 Tax=Bifidobacterium dentium RepID=D2Q9U9_9BIFI Length = 212 Score = 108 bits (271), Expect = 7e-23, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 49/191 (25%), Gaps = 21/191 (10%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGY 60 +++D ETTGL + A +E+G L V G V+ + G Sbjct: 23 DTYVMLDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDPQRPLPEFISRLTGI 82 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNT-------FAGSNPAFDSTIVARQRVTYSMP 113 + L + A WL N FD + + Sbjct: 83 SDGMLRDK----PTADAAMLRFHQWLDDVWPTGKPLTIIAHNAEFDIGFLDAAERAHDPD 138 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + R + + + + V H A+ DA Sbjct: 139 ANEFD------CRWLCTKEMSWE--LNPRKRHHRVSDLIVDYRIGDVEEHRALSDAIQEQ 190 Query: 174 FCFDMLRHTAA 184 + L A+ Sbjct: 191 MIYRALCREAS 201 >UniRef50_D2ATQ8 DNA polymerase III epsilon subunit and related 3'-5' exonuclease-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ATQ8_STRRD Length = 407 Score = 108 bits (271), Expect = 7e-23, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 16/160 (10%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+DLETTGL +E+G++++D + V P+ I+G Sbjct: 10 YAVIDLETTGLRPSWNDRVIEIGIVHLDLSGEVTGEWATLVNPGRDLGPQ--HIHGITAA 67 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + G V + L G A N FD+ ++ + + Sbjct: 68 DIRHA----PAFGEIAGAVAERLDGRVVAAHNLPFDAGFLSHEFGRLGLDTPLDHTAG-- 121 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 + A + L A R GV + H Sbjct: 122 ------VCTMAWSAQFLPGAPR-SLAACCARAGVSLNGHH 154 >UniRef50_C1XFI0 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XFI0_MEIRU Length = 200 Score = 108 bits (271), Expect = 7e-23, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 13/185 (7%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESL---YFVPHITVEQLAAADPKAMEINGYYER 63 +DLET+GL+ + + VG++ + G ++ + + A + ++ + Sbjct: 18 ALDLETSGLEP-SDQILSVGMVPIRGGVIEFGAHYYSLVRPVRPQALSVEGIQAHHILPS 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A E++ + + + D + + + T P+ V Sbjct: 77 ELEAA----PPLAQVLDEMEQRIGQDVLILHFSSIDLSFLRQSYKTLGRPWPKPLVVDTA 132 Query: 124 HHRLADLAAYAAGKLNIDPTELE--GLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + ++ L A G+P H A+ DA ATA F +LRH Sbjct: 133 ---VLLARLNERKRWLEPHSQPYPGALGAARATFGLPGHLEHHALWDALATAELFLVLRH 189 Query: 182 TAAAH 186 AH Sbjct: 190 RLQAH 194 >UniRef50_A1S5S6 DNA polymerase III epsilon subunit-related 3'-5' exonuclease-like protein n=6 Tax=Shewanella RepID=A1S5S6_SHEAM Length = 228 Score = 108 bits (271), Expect = 7e-23, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 14/174 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + ++ +DLE TGLD + +G++ +D G + ++ + ++ I+G Sbjct: 40 SAPMLALDLEMTGLDPGRDQILAIGVVPIDGGIIQLQGAESVLVEIQGSVGQSAVIHGIT 99 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLT 118 +R L+ A A + + G + D + SMP + Sbjct: 100 DRELHNAL----PLADAMNWLMQKMNGRILVAHHAPLDLAFIRANMSRSLGISMPMLAID 155 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + RL + L A +R G+PV + H+A+ DA + Sbjct: 156 TLALERQRLLRIHDAI-------QEGSLRLGASRQRYGLPVYDAHNALTDALSC 202 >UniRef50_Q8NQY3 DNA polymerase III epsilon subunit and related 3'-5' exonucleases n=4 Tax=Corynebacterium RepID=Q8NQY3_CORGL Length = 218 Score = 108 bits (271), Expect = 7e-23, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 66/190 (34%), Gaps = 17/190 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA--ADPKAMEINGYY 61 +L+ VD+ETTGL V +G + ++ V + + + + I+ Sbjct: 35 KLLAVDVETTGLKPHRHQIVSIGWVPINGDVIDLSGAGYVVIRGSEGFSVGSSAVIHQLT 94 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPLT 118 + + A G++ L+G + ++ + + + + Sbjct: 95 DDEIAAGI----DIKEALGQLLQALQGRAMLAHFSPIERDFISAACLKHFGTLLDVPLVD 150 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD- 177 + + ++ Y E L + +R G+P + H A+ DA A A + Sbjct: 151 TFAMERRHMERMSTY-------PRGEDLRLARIRQRYGLPNYSNHQALTDALACAEVYLV 203 Query: 178 MLRHTAAAHL 187 + H A L Sbjct: 204 QITHLRANTL 213 >UniRef50_D1VY91 UvrD/REP helicase n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1VY91_9BACT Length = 905 Score = 108 bits (271), Expect = 7e-23, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 57/188 (30%), Gaps = 13/188 (6%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++V D ETTGL+ V++ + + G + + + P+ ++ Sbjct: 520 EDIVVFDTETTGLNVFEDDIVQIAAVRMRQGCVVPGSEFVVFMRTNREIPR--KLGNIDN 577 Query: 63 ---RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L +++ + G N +D I+ Y + + Sbjct: 578 PLIEEIQHHQLYSPS--EGLKMFLEYVGNSRLLGHNADYDYHILNFNLQRY---LPDIQL 632 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + +L + L + L + N H A D AT Sbjct: 633 EERCNMYFD---SLKLIRLLEPNLKEYKLKYLLSVLHLEGQNSHLADADVHATCSVVRHC 689 Query: 180 RHTAAAHL 187 A H+ Sbjct: 690 YEKAKLHI 697 >UniRef50_C8WSI6 Exonuclease RNase T and DNA polymerase III n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WSI6_ALIAD Length = 218 Score = 108 bits (271), Expect = 8e-23, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 46/186 (24%), Gaps = 17/186 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAA---DPKAMEIN 58 V+DLET+G + V S + + E+ Sbjct: 27 EAPYFVLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAIVRHDDVADVPSHIWELT 86 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + VA + G + + D + R Sbjct: 87 GLTPE----AMRDGEPLEVALRRALELGAGRVWVAHHVRHDLGFLQRA----------TD 132 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R + ++ LD E LG+PVV RH A D TA + Sbjct: 133 ALWRLRLRPLAMDTAVVAQVLARAARPLTLDEACEWLGIPVVGRHRADADVRMTAAVWRK 192 Query: 179 LRHTAA 184 Sbjct: 193 EMELCG 198 >UniRef50_C1YMP7 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YMP7_NOCDA Length = 335 Score = 108 bits (271), Expect = 9e-23, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 48/167 (28%), Gaps = 20/167 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA---MEI 57 M++ +D ET ++D VGL+ V G + + D + + + Sbjct: 1 MSRTWTAIDFET--ANHDRGSACAVGLVRVRDGAVVDRYT-TLIRPPRQVDFFSRHNIAV 57 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + A + ++ G N AFD ++ + + Sbjct: 58 HGITAADVADA----PSWEQAHARIVEFADGGPLVAHNAAFDMGVLRQACGHTGL----- 108 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 H A + L V +G V + H Sbjct: 109 -----SHPAWEYACTLALSRRTWSGLPDHKLPTVCAHIGHRVTHHHR 150 >UniRef50_A4C923 Putative DNA polymerase, exonuclease activity n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C923_9GAMM Length = 210 Score = 108 bits (271), Expect = 9e-23, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 56/187 (29%), Gaps = 16/187 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+DLE TGLD V + L ++ + + ++ +G Sbjct: 27 KYLVIDLELTGLDPKVDEIVSLAWLPIEEQRIIVGRSEHFINCEVNELKQSPIFHGIDRF 86 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A E+Q L + N D + ++ + Sbjct: 87 AVKGGV----PLRQALLELQPLLDDHVLVFHNAELDWAFLKAAFQNANL--------LLS 134 Query: 124 HHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + D +L E L R +P H+A+ DA ATA F Sbjct: 135 SSVMLDTMKIEYKRLMNQGHEIASDDLNLARCRSRYQLPEYLTHNALTDALATAELFLAQ 194 Query: 180 RHTAAAH 186 + A Sbjct: 195 LNQIAGA 201 >UniRef50_Q854A2 Gp164 n=1 Tax=Mycobacterium phage Omega RepID=Q854A2_9CAUD Length = 178 Score = 108 bits (270), Expect = 9e-23, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 108/187 (57%), Gaps = 13/187 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M++Q+IVVD ET GL + A +E+ +NV+TGE VP +T QL++ +P+A+ IN + Sbjct: 1 MSRQIIVVDTETGGLGPN-APVLEIAAVNVETGEEFRVVPFVTAAQLSSCEPEALAINRF 59 Query: 61 YERGL-YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 YER + + A+ ++ L GN FAGSNPAFD+ ++A+ Sbjct: 60 YERRVFADMLEDAEGNKNAFDWLRSMLDGNVFAGSNPAFDAPLIAKLLN----------- 108 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 G WHHR L +YAAG L + EL GL+ V E LGV + HSA+GDA ATA CF +L Sbjct: 109 GEPWHHRKLALESYAAGVLGLPLDELPGLNKVCEILGVENEDPHSALGDARATAECFRIL 168 Query: 180 RHTAAAH 186 R A + Sbjct: 169 RGMAEQN 175 >UniRef50_D0B757 DNA polymerase III n=38 Tax=Brucellaceae RepID=D0B757_BRUME Length = 224 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K++IV D ETTG+ + +G + ++ GE L ++ + + P+A ++G+ Sbjct: 14 KRVIVFDTETTGILPY-DRIITLGAVKIEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDN 72 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + A + N FD + R+ V + Sbjct: 73 WMTRYQDLFHELAAPIRKWF---SWADEVVAHNAQFDMHYIQREFRKA-------EVDML 122 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLRH 181 + + + LD ++G+ H A+ DA TA + + Sbjct: 123 DQPVYCTMDG---ARRLW-RGDSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQG 178 Query: 182 TAAA 185 A Sbjct: 179 VAKP 182 >UniRef50_C5V7D5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7D5_9PROT Length = 303 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 27/179 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTG------ESLYFVPHITVEQLAAADPKAMEING 59 +VVD ETTG++ +E+G++ + + + A P++ E++G Sbjct: 43 VVVDTETTGINSAQDAIIELGMVLFEYDPDTGEAGRVLGSFDQLEDPGMAIPPESTEVHG 102 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + A D + N FD + ++ + Sbjct: 103 ITDEMVQGKRID----DAAVAAFLD--GVSVVIAHNSKFDRVFLEKRLSVF--------- 147 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + A + LD ++ + G H A GD A Sbjct: 148 -----ETLPWGCSLAQVDWRAEGIGSAKLDYISYQYGF-FYEAHRAEGDCYALLEILQQ 200 >UniRef50_UPI0001B53E3D DNA polymerase III subunit epsilon n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B53E3D Length = 282 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 57/186 (30%), Gaps = 13/186 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L DLET+G+D + V + GE + ++ A ++G Sbjct: 20 RLCAFDLETSGVDVEADRIVTAAAYGLGGGEPVEPHDW-MLDPGVEIPAGATAVHGITTD 78 Query: 64 GLYREALTEQ----QTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E G G N +D T++ R+ Y +P + Sbjct: 79 EARAKGEPAPGGIDHISDVLAEYAR--AGVAVVGHNVPYDFTLLDRECRRYELPTLHDRL 136 Query: 120 GRVWHHRLA----DLAAYAAGKLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATA 173 G + + D A + L +A+ +P H A DA A Sbjct: 137 GETPLYVIDTRVLDQHADPYRRRPSKDQGARQLVTLAQVYELPWDDEGAHGAAYDAVLAA 196 Query: 174 FCFDML 179 + Sbjct: 197 RVAYRI 202 >UniRef50_A1TZ29 DNA polymerase III, epsilon subunit n=3 Tax=Marinobacter RepID=A1TZ29_MARAV Length = 235 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 15/185 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +LIV+DLETTGL+ + +G + ++ G + + + + + I+G Sbjct: 40 RLIVLDLETTGLNASKDEVIAIGAVAIEGGVIHLNDQFDLILRRPELDIRETVLIHGIGP 99 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYSMPFSPLTVGR 121 L + T+ A + +W+ G+ + AFD + + Sbjct: 100 EALTQGYETQ----DALLYLLEWMNGDPILAYHSAFDQKFLEKTLKSQLGYTLP------ 149 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 H D+A + GLD A+ G+ + RH A DA TA + + Sbjct: 150 ---HVWMDVAELMPAFFPKATIKGRGLDDWADVFGLEISERHHAAADALVTAELALIALN 206 Query: 182 TAAAH 186 A + Sbjct: 207 KARKN 211 >UniRef50_C1D0R4 Putative DNA-directed DNA polymerase (DNA polymerase III, subunit) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0R4_DEIDV Length = 204 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 15/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHIT-VEQLAAADPKAMEING 59 + L+ +D E+TG++ ++VGL +D G V + I+G Sbjct: 9 LEASLVALDFESTGMNPAHDEVIQVGLAPLDAGAVDLGGAWAQWVRPTRPFRADTVAIHG 68 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E+ L+G A + + R + T+ Sbjct: 69 LSYELLQEA----PAISTVRLELGARLQGRVLVAHYAALELGFLKRWGLR-----PAATL 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + D + A + + L A+A R GV V H A+ DA TA F +L Sbjct: 120 DTLMLALALDRQSTATARRDA-----YTLSALARRFGVEVYGEHDALADALITAQVFLVL 174 Query: 180 RHTAA 184 H Sbjct: 175 AHELE 179 >UniRef50_C1SJH8 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJH8_9BACT Length = 179 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 44/164 (26%), Gaps = 18/164 (10%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLY--FVPHITVEQLAAADPKAMEINGY 60 V D ETTG+ A +E+G + V G L + A A ++G Sbjct: 10 TFTVFDTETTGMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLINPKAPIPYNAYSVHGI 69 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + A N FD + V+ + + Sbjct: 70 STAMVADK----PEIKDVLPGFFSFTENTIIAAHNARFDCSFVSHHSAECCIVNPMTKI- 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RH 163 + K + L + + + RH Sbjct: 125 ---------VDTVKLAKSAHSGLKSYSLGNLIHYFSMDIPPSRH 159 >UniRef50_A3WQA1 3'-5' exonuclease n=1 Tax=Idiomarina baltica OS145 RepID=A3WQA1_9GAMM Length = 217 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 19/185 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV--PHITVEQLAAADPKAMEIN 58 I +D+ETTGLD + + + + L H ++ I+ Sbjct: 25 QEHTYIAIDIETTGLDPINDQILSIAWVPIKPPMILIGEAQYHEFCVDPDVDLQQSPTIH 84 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + L +++D L G + + D + + R+T ++ F PL Sbjct: 85 GLTKAQLSSGG----DVKKVLKDLEDKLYGCVMVCHHRSLDWSYLRDNRLTENLHFEPLG 140 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPT-----ELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 V D ++ K++ D L A R G+P+ H A+ DA A A Sbjct: 141 VF--------DTLSFEKNKMSFDNEFQLHNSSLTLAACRTRHGLPIYTSHHAMDDAIACA 192 Query: 174 FCFDM 178 F Sbjct: 193 ELFLA 197 >UniRef50_C7U038 Putative uncharacterized protein n=1 Tax=Ostreococcus tauri virus 1 RepID=C7U038_9PHYC Length = 446 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 51/199 (25%), Gaps = 27/199 (13%) Query: 5 LIVVDLETTGLDYDT-------------ALPVEVGLLNVDTGESLYFVPHITVEQLAAAD 51 + D ET G+ A V + + + + + Sbjct: 8 YVAWDTETCGIPKTRVRPTRENLSKFDDARIVSLSAVKFSS-RGREIDTFNRIIKPIGYQ 66 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNT--FAGSNPAFDSTIVARQRVT 109 A I+G + A+ E +++ N FD I+ + + Sbjct: 67 VGATHIHGITHEYAEEHGVP---FKTAFQEFIEFIGDRCNILCAHNSLFDEGIIGHELLR 123 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGD 168 + + + + + L + + G N H+++ D Sbjct: 124 IGLDPNK---DFLDKYIFNCTHEMYKKRFL----SSIKLTNLYKDIFGKEFDNAHNSLAD 176 Query: 169 AAATAFCFDMLRHTAAAHL 187 A A + L L Sbjct: 177 ARACGQVYPYLMGNTKREL 195 >UniRef50_B6BKX7 Exonuclease n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BKX7_9PROT Length = 272 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 52/175 (29%), Gaps = 18/175 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VD+ET G D +E+G + V G + ++ + EI G Sbjct: 68 EFCIVDIETNGSKIDKHQIIEIGAVKVRDGVIIDK--FESLVYCREINKHITEITGISVE 125 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 E + +L F + FD ++ + Sbjct: 126 DTKNA----PNLKKVLYEFKSFLGNAIFVAHDVKFDYKFISLSMQKIGLEPLLNRS---- 177 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFD 177 + + A + I+ L + + L + P H A+ D T F Sbjct: 178 ------ICSLALAERTIESY-RYALSYLNDSLHLNPNATHHRAMSDVITTYGLFM 225 >UniRef50_D0U233 Putative exonuclease n=1 Tax=Clavibacter phage CMP1 RepID=D0U233_9CAUD Length = 236 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 17/193 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++V D ET+G+D + V + +D ++ ++ A +I+G Sbjct: 5 DKIMVFDTETSGVDVENDRIVTAFIGLMDPDGTMTEFHEWLIDPGIPIPEGASDIHGITT 64 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGN-----TFAGSNPAFDSTIVARQRVTY-SMPFSP 116 + E + A E+ L N +D TI+ R+ + + Sbjct: 65 EKAHAEGR--KDIDKALMEIATKLDYASRWNYPVVIMNAPYDLTILDRELRRHVGIKNFR 122 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGDAAATAFC 175 + + KL L +A GVPV N H A D Sbjct: 123 APNVVLDTFVID-------KKLYTFRKGSRKLVDLARIYGVPVEENAHDAQADCRMAGRV 175 Query: 176 -FDMLRHTAAAHL 187 L+H A L Sbjct: 176 TLKQLQHEWLAPL 188 >UniRef50_C9PT90 Putative uncharacterized protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PT90_9BACT Length = 900 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 9/185 (4%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++++V D ETTGL+ V++ + + + + P + Sbjct: 514 TEEIVVFDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFIKTERPIP--AMLGDIP 571 Query: 62 ERGLYR-EALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + T A A + ++ + N FD I+ Y Sbjct: 572 NPIVAELQRNTCLPAAQALQDFMQYVGDSVLLAHNADFDYNILRFNLQRYCPSIDLHATH 631 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + +L + L A+ E L + N H A D AT R Sbjct: 632 PTY------FDSLKIIRLLQPGLKQYKLKALLEVLHLEGTNSHLADEDVQATVSLVGYCR 685 Query: 181 HTAAA 185 AA Sbjct: 686 QKAAE 690 >UniRef50_B5ETC4 DNA polymerase III, epsilon chain n=2 Tax=Vibrio fischeri RepID=B5ETC4_VIBFM Length = 259 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 60/189 (31%), Gaps = 21/189 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPK---------A 54 VVD ET+GL+ T V +G +++ G L H + + + + + A Sbjct: 66 FTVVDFETSGLNPKTDHIVSIGWVHIINGVIKLNSAQHHIINEPISINAEDEGEERDHTA 125 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 ++ + ++ A L N + + + ++ +P Sbjct: 126 RSLHHILPEQ-QKMGIS---LEKAMECFFSNLPSNILVVHGATIEQRFLEQFFLSLQLPN 181 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 P+ + + L ++ + +P H A+ DA +TA Sbjct: 182 LPMIWLDTLRIEQNTIQQNRYQR-------DFRLFSLRRQYKLPDYPAHHALVDAISTAE 234 Query: 175 CFDMLRHTA 183 F + Sbjct: 235 LFLAQKKRL 243 >UniRef50_D0I3G5 Putative exonuclease n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I3G5_VIBHO Length = 198 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 15/180 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I +D ETTGL + A E ++ + ++ +A I+G + Sbjct: 26 ITIDTETTGLG-EDAEICEFAAIDGRGNVLIN----TLIKPSKPIPAEATAIHGITNDMV 80 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ-RVTYSMPFSPLTVGRVWH 124 T G + L A N +D ++ + +++ + Sbjct: 81 E----TAPTWLEVEGMIAGLLVSRPVAIYNAEYDIRVIWQTSMISHGKDRAVPDELERSI 136 Query: 125 HRLADLAAYAAGKLNI----DPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDML 179 + + YA + L A A GV V N H A+ D T + Sbjct: 137 NATCIMLEYAEYRGEWCDSRHQYRWHKLTAAAAHEGVTVEENAHRALADCRMTLGLIKAM 196 >UniRef50_C0W0V1 DNA polymerase III subunit epsilon n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0V1_9ACTO Length = 232 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 7/182 (3%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 L+ DLETTG+D V E L V + A++++G Sbjct: 8 LLGFDLETTGVDTARDRIVTASYEVRCGSEVLEQVT-LLFNPGVEIPQSAIDVHGITNER 66 Query: 65 LYREALTEQQ-TAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 E L + ++ +L G G N FD T++ + Y +P +G Sbjct: 67 AQAEGLDPRVGLEQLAAKLVSYLSEGAPLVGFNVQFDVTLLENELRRYGLPTVAERLGGR 126 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDMLR 180 + + L L + E G+ H + D + T + Sbjct: 127 FAPIVDPLVLDRELDRWRKG--KRKLVDLLEVYGIAVDPDELHQSDVDVSMTLSLLQAMV 184 Query: 181 HT 182 Sbjct: 185 RK 186 >UniRef50_Q2RWQ8 Exonuclease n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RWQ8_RHORT Length = 209 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 13/185 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYE 62 +++ VD ETTGLD + + + V L V + A+ I+ E Sbjct: 30 EVVSVDCETTGLDRHNDDIITLAAVRVRGNRVLTSQKLDLVVKPSRPIRRDAVCIHHLRE 89 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 + + R A + G FD ++ R + +P + V Sbjct: 90 QDVERGLAP----REAVARFLRFAGSRPLIGYYLEFDVALIDRLVRPWLGIGLPNPRIEV 145 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +++ + T + E L +P ++ H A DA T+ + L Sbjct: 146 SEMFYD-----WRTRGREELYTGTVDLRFATILEALDIPPLHNHDAFEDAVMTSLAYLKL 200 Query: 180 RHTAA 184 R A Sbjct: 201 RARAG 205 >UniRef50_D1BPK1 UvrD/REP helicase n=3 Tax=Veillonella RepID=D1BPK1_VEIPT Length = 862 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 62/179 (34%), Gaps = 13/179 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++V D+E+TG D +++ + +D + ++ E++G+ + Sbjct: 493 EVVVYDVESTGTDTAQDRIIQIAAIRIDEDGQVL-ETFERFINPGVPVGQSEEVHGFSDA 551 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ A+ +++ + G N +D TI + +++ + Sbjct: 552 YLQEHG---EEPAIVLQAFKEFSKNAIIVGHNVNYDVTIFTNELARHNLGNPE------F 602 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L Y + L +A + + H+A+ D ATA Sbjct: 603 KAIYDTLDIY---RRFYPNLPNHKLGFLASKFPIHHEPTHNAMDDILATAQLLIYAVKE 658 >UniRef50_C9LN05 DNA polymerase III PolC-type n=1 Tax=Dialister invisus DSM 15470 RepID=C9LN05_9FIRM Length = 196 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 18/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+D+ETTG+ + E+ L V +GE H V+ + + + G Sbjct: 30 TYTVMDIETTGM---YSDITEIAALCVVSGEIRD-TFHTLVKAKGPIEKRVERLTGITSD 85 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ G G D ++ R P + Sbjct: 86 MLEEQ----PPIDDVLPIFMTFIEGFPLVGHGLDSDLIVIDRNLKAVGKP--------LV 133 Query: 124 HHRLADLAAYAAGKLNI--DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D + A L + A+AE +P H A+ D A F+ L Sbjct: 134 TNDYIDTHSLAKLLLPEREGEHRKYSVKALAEYYELPCSTFHRAMDDCMAEKMLFERLLA 193 Query: 182 TA 183 Sbjct: 194 EW 195 >UniRef50_A3QFI6 Exonuclease, RNase T and DNA polymerase III n=5 Tax=Shewanella RepID=A3QFI6_SHELP Length = 226 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 16/181 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +L+ +DLE TGL+ + +G++ + G+ + + Q+ + ++ I+G Sbjct: 40 EAELLAIDLEMTGLNASFDQILSIGVVPIRQGQLILSEAQHKLVQIEGSVGQSATIHGIL 99 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L A G + D + +G Sbjct: 100 DTHLDAALTP----EQAMAWFLSVSEGMVLVAHHAPLDLAFLQSGLQ--------ACLGE 147 Query: 122 VWHHRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 D +L L R G+PV H+A+ DA A Sbjct: 148 KPRLLAIDTLLLEKQRLLRQQEHLQEGCLRLGRSRARYGLPVYAAHNALIDALACGELLL 207 Query: 178 M 178 Sbjct: 208 A 208 >UniRef50_A8L7F0 Exonuclease RNase T and DNA polymerase III n=1 Tax=Frankia sp. EAN1pec RepID=A8L7F0_FRASN Length = 237 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 62/183 (33%), Gaps = 9/183 (4%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + V+D ETTG D +T V+V LL V L + I ++ A I+G Sbjct: 6 RPMAVLDFETTGTDVETDRAVQVALLKVGPTGVLNQLCQI-IDPGVDVPEAAARIHGITT 64 Query: 63 RGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 RE + G+ + W G N +FD T++ R+ + Sbjct: 65 ERARREGRDPAEVLGRVGQALEGVWRDGIPVVIMNSSFDLTLLDRELRRHHGRSLAEADM 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V + D L+ L A+A V H A+ D TA L Sbjct: 125 LVLDPMVIDRE------LDPRRPGKRTLTALATHYRVRQEGAHDALADCLTTARIAWRLP 178 Query: 181 HTA 183 Sbjct: 179 RMH 181 >UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammaproteobacteria RepID=Q21I25_SACD2 Length = 485 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 57/200 (28%), Gaps = 16/200 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEI 57 M K D ET G + P + + D ++ + + +P+A + Sbjct: 1 MQKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLV 60 Query: 58 NGYYERGLYREALTEQQT-AVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVT-YSMPF 114 G + + +TE++ E+ G G N FD + Y P+ Sbjct: 61 TGLTPQETLAKGVTEREFIKQIHRELAK--PGTCGVGYNSIRFDDEVTRYTLYRNYFDPY 118 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNI-------DPTELEGLDAVAERLGVPVVNRHSAIG 167 + D+ D L+ + + G+ + H A Sbjct: 119 EREWRNGNSRWDIIDMVRLCYALRPEGIEWPVVDGKPSFRLENLTKVNGIVHASAHDAYS 178 Query: 168 DAAATAFCFDMLRHTAAAHL 187 D AT L L Sbjct: 179 DVEATIKL-ARLVREKQPAL 197 >UniRef50_D1W6A9 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1W6A9_9BACT Length = 904 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 9/182 (4%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++V D ETTGL+ V++ + + G+ + + + P+ ++ Sbjct: 520 QDIVVFDTETTGLNVFEDDIVQIAAVRMRQGKVVPGSSFVVFMETDRDIPQ--QLGEIEN 577 Query: 63 RGLYREALT-EQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A D++ + G N +D I+ Y L Sbjct: 578 PLIAEMQRHVLHSHAEGLQMFMDYVGDSMLLGHNADYDYHILDFNLQRY------LPAIS 631 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L + +L L + L + N H A D AT Sbjct: 632 LKEQCPRYLDSLKLVRLLEPNLREYKLKHLLSVLHLEGENAHLADADVDATCNVVRHCYG 691 Query: 182 TA 183 A Sbjct: 692 KA 693 >UniRef50_B1BYN4 Putative uncharacterized protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1BYN4_9FIRM Length = 261 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 18/181 (9%) Query: 1 MAKQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + +V+D ETTG++ Y V+V ++N D + + + P A ING Sbjct: 1 MKNKYVVLDFETTGVNRYHNDEVVQVAIVNQDD--EVLINELCKPKHHFSW-PSAQRING 57 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + + + + + N AF+ ++ Y + S Sbjct: 58 ISPLMVKDKLC----FESYIDRIIEIFDNSEFIVCYNIAFEQGMLKN----YGIDISKY- 108 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 V+ + D A + + + L A+ G H A+ D AT +CF+ Sbjct: 109 ---VFKDPMKDFAYIYGERGYHGGYKWQSLSTCAKYFGY-NFAAHDALEDVKATRYCFEQ 164 Query: 179 L 179 + Sbjct: 165 I 165 >UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae RepID=B5K7E4_9RHOB Length = 500 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 16/198 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYY 61 + DLETTGL P++ + D E + P+A+ + Sbjct: 2 DFVFYDLETTGLSPAFDQPLQFAAIYTDENFVEKDRVNIRCRLAPHILPSPQALVVTRVT 61 Query: 62 ERGLYR-EALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTV 119 L + + + E+ + + G N FD ++ + ++ + Sbjct: 62 PDQLTDPSLPSLFEFSQQVAELTERWAPAIWVGYNTIKFDEEVLRQTFYR-NLSPNVYAT 120 Query: 120 GRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGDA 169 + R L A A + LD +A G N H A+GD Sbjct: 121 QFNGNTRFDILPAVYAAYVREPDLLAWPKDDTGRRSFKLDRLAPANGFKAHNAHDALGDV 180 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L + L Sbjct: 181 EATIHI-ARLIAMRSPAL 197 >UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S7Q3_PROA2 Length = 189 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 21/193 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEING 59 K+++ D+ETTG + +++G + G + + A P A+ I+G Sbjct: 3 QHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDGVVVEECNLKCAPHEGAEISPDALAISG 62 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWL----------RGNTFAGSNPAFDSTIVARQRVT 109 L + A+ + + +L AG N FD + Sbjct: 63 TERSELESRMTSH----EAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRH 118 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDP--TELEGLDAVAERLGVPVVNRHSAIG 167 + +G + R+ D K L+ V G+ + + H A+ Sbjct: 119 HG---DKYGIGSFINWRMLDPLPLLFIKDFTRQITLPDYRLETVCRHFGIAL-HAHDAMS 174 Query: 168 DAAATAFCFDMLR 180 D AT L Sbjct: 175 DIRATRELLLKLL 187 >UniRef50_D2VB97 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VB97_NAEGR Length = 302 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 64/189 (33%), Gaps = 10/189 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++V+D+E T + +EV + G S+ + + EI + Sbjct: 81 VVVLDIEGTSTNTSYCRMIEVACARIVDGTSISSFTSLVNADIDYIPEPVQEITKITKAM 140 Query: 65 LYREALTEQQTAVAWGEVQDWL--RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + Q ++ ++L + + G N FD++++ + V Y + + + Sbjct: 141 I--DLSPPPQI--VLSQLYNFLSSQPSLVVGHNVRFDASVIYNEFVRYKIINNEVHKPDD 196 Query: 123 WHHRLA---DLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDM 178 + L + L + E LG+ N H A D + T + Sbjct: 197 FISHSLFTNTLCTLKLARRLFQGQPDYKLGNLVENLGLGRSINAHRAHADVSMTTLLWRR 256 Query: 179 LRHTAAAHL 187 + + L Sbjct: 257 IYRESFERL 265 >UniRef50_Q3JDE1 Exonuclease n=4 Tax=Gammaproteobacteria RepID=Q3JDE1_NITOC Length = 205 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 57/186 (30%), Gaps = 15/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTA--LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 + IV+D ETTGL + V +G+ V E V +A I+ Sbjct: 12 LPDDYIVLDTETTGLPDENGLPDIVTLGITVVSNREIAESVEF-KTRPQKRISEEAQSIH 70 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + W ++ ++L+ N +FD I+ + + + + Sbjct: 71 GITNKQAAA----FDSFDSQWQQISEYLKHQLIVIHNASFDWPILLDHVLRHGLAMPEIQ 126 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-----VVNRHSAIGDAAATA 173 +A LD + + LGV H A D+ A Sbjct: 127 GVFCSQKAAI---PWAQAMDLPCSHRGPSLDTLTKALGVEDLRVKEDGLHGAKIDSRQLA 183 Query: 174 FCFDML 179 ++ Sbjct: 184 QVVQVI 189 >UniRef50_Q6MC14 Putative DNA polymerase III, epsilon chain, mutD n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MC14_PARUW Length = 216 Score = 106 bits (265), Expect = 4e-22, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 38/165 (23%), Gaps = 19/165 (11%) Query: 22 PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGE 81 +E+ + F + P++ I+ + + A E Sbjct: 1 MIEIAAYDPVQNR--RFEKFV--HPGFPIPPESTAIHHITDEMVANAG----SFADVGAE 52 Query: 82 VQDWL-RGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLN 139 ++ N FD + + + L + + Sbjct: 53 FVEFCAGEVVLIAHNNDNFDLHFLRHEFERNQLILPT---------HWKFLDSLKWARRY 103 Query: 140 IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + E G+ N H A+ D F + Sbjct: 104 RSDLPRHTLQFLREIYGITANNAHRALDDVIVLERVFRSMVDDLE 148 >UniRef50_UPI0001AF0A70 hypothetical protein AbauAB_10367 n=1 Tax=Acinetobacter baumannii AB900 RepID=UPI0001AF0A70 Length = 179 Score = 106 bits (265), Expect = 4e-22, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 18/186 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ VD ETTGL+ + +E+ L+ D + ++ DPKA ++G Sbjct: 1 MIPYILGVDTETTGLEVENGDKIIEIALIKYDLDGAKLEEFVQRIDPERNIDPKAQAVHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLT 118 L + + EV + + N AFD +A + M ++ Sbjct: 61 ISYSDL----IGCPKFVDIAEEVASIVNHASLLVAHNFAFDGPFIATELKRAGMTPKKVS 116 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCF 176 G+ + L + LGV H+A D CF Sbjct: 117 SF----------CTMEYGRWATFDGKYPKLADLCFSLGVEYDASAAHAASYDVDVMMQCF 166 Query: 177 DMLRHT 182 R Sbjct: 167 FKARER 172 >UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L7M7_NAUPA Length = 293 Score = 106 bits (265), Expect = 4e-22, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 71/179 (39%), Gaps = 10/179 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++++D ETTG + + +++ L ++ + + V+ +AM ++ Sbjct: 2 KIVILDTETTG-NKEEDRIIQLSYLVLNENLEIEEIHDELVKPPLPISFEAMAVHHITNE 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + L + ++ +++ N FD ++ ++ ++ F + RV Sbjct: 61 MVEDKPLIKHT--ESYKRLKELNSPENLLVIHNAKFDLDMLKKE--GFNSFFKLIDTFRV 116 Query: 123 WHHRLAD-LAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 H + + + + + + E + E+ + + N H A+GD F+ L Sbjct: 117 LKHLIPEGKFSLQYNRYALGLYKKEK--DICEKYNIQI-NAHDALGDVIVLGLLFEYLV 172 >UniRef50_A4A420 Exonuclease family n=3 Tax=unclassified Gammaproteobacteria RepID=A4A420_9GAMM Length = 221 Score = 106 bits (265), Expect = 4e-22, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 14/187 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D E +GLD A + +G + V E + + + ++ I+ + Sbjct: 40 DFLVCDAEMSGLDPRQAELLSLGWVRVSGLEIALGSARHLLIRNRESVGQSATIHQLRDC 99 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + G N A D+ + + + Sbjct: 100 ELRDAG----DVKEGLEALLAAAGGRVLVFHNAALDTAFLDYAAK-------AVFGAPLL 148 Query: 124 HHRLADLAAYAA--GKLNID-PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L + L A ER G+ N H+A+GDA ATA Sbjct: 149 LPTIDTLLLEKRLLQRQERPIGQGDLRLGACRERYGLTTHNAHNALGDAMATAELLLAHI 208 Query: 181 HTAAAHL 187 L Sbjct: 209 AKRGRGL 215 >UniRef50_B4WXR6 Exonuclease superfamily n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXR6_9GAMM Length = 215 Score = 106 bits (264), Expect = 5e-22, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 63/178 (35%), Gaps = 10/178 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 ++ +D ETTGLD TA V + + + G L + + + + I+ Sbjct: 45 VVAIDCETTGLDSRTAELVSIAAVVIKDGRVLSSQGLDVKLMPPDSLKEDTIRIHRLRPV 104 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + + G AFD ++ R P + + Sbjct: 105 DLEGG----ESVRDALDALLALVGNRPLVGWCVAFDVAMINRYLRPLMGFDLPNDIIELS 160 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L D T DA+A L VPV+ RH+A GDA +A + L+ Sbjct: 161 A-----LYQKKMRYWQPDVTPDLRFDAMASALQVPVMERHTARGDAVTSALMYLQLQK 213 >UniRef50_A1SRL7 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRL7_PSYIN Length = 228 Score = 106 bits (264), Expect = 5e-22, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 8/167 (4%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 L+ +D+E TGLD V +G++ + + + ++ + ++ I+G Sbjct: 40 EATLLALDIEMTGLDPKKDQMVSIGIIPIINAKIQPEFAQHKLIKIQGSVGQSAVIHGVL 99 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L A + + + + D + + + Sbjct: 100 DKDLADAL----PLEEALQWLFEQCKDKVLVAHHAQLDLQFLQQSLSKSGAH----SFSM 151 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + L K + T L+A +R +P+ N H+A+ D Sbjct: 152 LAIDTLIIEKERELRKHQVLKTGSLRLNACRDRYNLPIYNAHNALTD 198 >UniRef50_C0QMS3 Predicted type III DNA polymerase PolC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QMS3_DESAH Length = 290 Score = 106 bits (264), Expect = 5e-22, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D+ET + D A ++G+ + G+ L V DP + ++G E Sbjct: 2 EFVSIDVET--ANPDMASICQIGIACFNNGQ-LEREWSSLVNPRDYFDPINVSVHGINET 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + E++ L G FD + + +S+ + Sbjct: 59 SV----SSAPSFEEIYHEIRSLLSGKICVSH-THFDRISMDKAIRKHSLDPIDV------ 107 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D A A + GL V + +G H A+ DA A A Sbjct: 108 --VWLDSARIARRAWEECAWKGYGLANVCKIIGFEFK-HHDALEDAKACGAIVHAAVEKA 164 Query: 184 AAHL 187 L Sbjct: 165 GLTL 168 >UniRef50_Q31GK8 Exonuclease n=8 Tax=Bacteria RepID=Q31GK8_THICR Length = 207 Score = 106 bits (264), Expect = 5e-22, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 12/182 (6%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 +++ D ETTGL+ V + + + E L +T Q AA ++++I+ Sbjct: 29 DEVVCFDCETTGLNPRKDRIVSLSAIKIRGNEVLTSEALNLTFVQEAAISEESIKIHWIR 88 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYSMPFSPLTVG 120 + ++ G FD +V + + + Sbjct: 89 NEDTKAGLSEQ----EGIEAFLHFIGSRPLVGYYLEFDVAMVNQIIKPWLGITLPNAQI- 143 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V K+ DA+ + L +P + +H A DA T+ + L+ Sbjct: 144 EVSSRYYDYKEEIIPKKII-----DLTFDAILKDLELPNLGQHDAFSDAFMTSLIYIKLK 198 Query: 181 HT 182 Sbjct: 199 SL 200 >UniRef50_C9S192 Exonuclease RNase T and DNA polymerase III n=6 Tax=Geobacillus RepID=C9S192_GEOSY Length = 242 Score = 106 bits (264), Expect = 5e-22, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 50/184 (27%), Gaps = 18/184 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++D+ETTG + + + G + V+ + G Sbjct: 61 PFVIIDMETTGFSPEQGDEILAMAAAKTVGG-VVTDAYMTLVKPEKPIPEHISALTGIE- 118 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 ++ + A A ++ G + D + + Sbjct: 119 ---AKDVVFAPPLAEALRTFVPFIAAGVLIGYHIGHDLAFLRHALWRHYRQK-------- 167 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 W R DL + + D G+ RH+A GD A A + +L Sbjct: 168 WSGRFVDLQPM----MTLIGHSCPTFDDALACYGIRCPRRHTADGDVEAMAKLWAILLDE 223 Query: 183 AAAH 186 Sbjct: 224 FRQR 227 >UniRef50_A5FFY1 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FFY1_FLAJ1 Length = 198 Score = 106 bits (264), Expect = 5e-22, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 59/181 (32%), Gaps = 13/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+ ET+GL+ + + + +G +V + V K +E NG Sbjct: 29 KFVVLSTETSGLNPNKDVILSLGAFSVIDDSIIIKENFEAVL----LQYKFLEDNGLSNE 84 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +T+ A A ++L G + FD ++ + Sbjct: 85 FIIESKMTKMPEAEALEAFINFLGNAVLVGHHINFDIEMLNAALERLDCGRLKNEALDID 144 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 KL + L+ + E +P +R+S+ DA F L+ Sbjct: 145 ---------VMYRKLTDINDKQFSLNDLCEIYKIPKSDRNSSAEDAYKIGLLFLKLKSRL 195 Query: 184 A 184 Sbjct: 196 G 196 >UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID=B0BNV2_ACTPJ Length = 514 Score = 106 bits (264), Expect = 5e-22, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 52/202 (25%), Gaps = 17/202 (8%) Query: 1 MAK--QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAM 55 M K D E+ G+ P + + D+ ++ + P+A+ Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 + G + E + E + A +N +D + Sbjct: 61 MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFD-P 119 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSA 165 + + R L A L+ + + G+ N H A Sbjct: 120 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDA 179 Query: 166 IGDAAATAFCFDMLRHTAAAHL 187 + D AT L L Sbjct: 180 MADVYATIA-MAKLIKQKQPKL 200 >UniRef50_B1YF69 Exonuclease RNase T and DNA polymerase III n=2 Tax=Exiguobacterium RepID=B1YF69_EXIS2 Length = 190 Score = 106 bits (264), Expect = 5e-22, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 49/182 (26%), Gaps = 14/182 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + +D ET + ++ G + G + + + D + ++G Sbjct: 1 MPPYTLAIDFET--ANRNSRSICAFGWSVLSEGRVVTSEQ-VLINPEEDFDAGNIRVHGI 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + A G + + N AFD + + Y + Sbjct: 58 RPSDVWDA-PALPEAMEAHGLFKLIEKAELVIAHNAAFDMGALQKAVQKYDLYQ------ 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L+ +AE L V H A DA A + Sbjct: 111 ---MPTFQYGCTVKLSRKLYPWLPNHKLNTMAEFLNVSFK-HHDAKEDAYICALLLQDMF 166 Query: 181 HT 182 Sbjct: 167 DR 168 >UniRef50_A4HKS0 Exonuclease-like protein (Dna polymerase iii epsilon subunit-like exonuclease) n=1 Tax=Leishmania braziliensis RepID=A4HKS0_LEIBR Length = 292 Score = 106 bits (264), Expect = 6e-22, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 55/248 (22%), Gaps = 78/248 (31%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV----------------------------------- 30 +VVDLETTG +EVG + + Sbjct: 53 VVVDLETTGFSPTADEILEVGCVELRWTPSSRTTLTGPKDADPCAPPLEKQGSCGVLEGL 112 Query: 31 DTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWL---- 86 T F ++ A ++G + V E+ ++ Sbjct: 113 WTRGGRVFHRYVRPSHPRRITAAATAVHGITWEKVQH----CAPWPVVASELVAYMTLIR 168 Query: 87 ----------------------RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 N FD+ +A WH Sbjct: 169 ADALFTKSVQVEAAQHGGHSAVHLPPLVAHNALFDARFLAHHLQRCGYQ-------IFWH 221 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-----VVNRHSAIGDAAATAFCFDML 179 + ++ LD + L + N H A+ DA TA F + Sbjct: 222 PQYPLTCTRQWAQVAYPHLAN-NLDTLCAFLSIDGAADRATNGHGALTDATLTALLFLRM 280 Query: 180 RHTAAAHL 187 Sbjct: 281 CCRWTERF 288 >UniRef50_A0JYL8 DNA polymerase III, epsilon subunit n=8 Tax=Micrococcaceae RepID=A0JYL8_ARTS2 Length = 254 Score = 105 bits (263), Expect = 6e-22, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 10/182 (5%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + DLETTG + A V + VD S+ + +A E++G Sbjct: 25 RPRAAFDLETTGRNSRAARIVTASVTVVDADGSVITEHEWLADPGIEIPAEASEVHGVTT 84 Query: 63 RGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + V + G N ++D T++A + Y +P Sbjct: 85 ERARLEGRPAAEVTRELASVLQGLFDDGIPVIAFNASYDFTVLAAESARYGIP------- 137 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ + D +++ L A+ E V + N H++ DA AT D + Sbjct: 138 QLNRFPVLDPYIMNK-QVDRFRKGKRTLTALCEEYKVNLDNAHTSAADALATLRMLDAMA 196 Query: 181 HT 182 Sbjct: 197 GK 198 >UniRef50_A7HLA2 DNA polymerase III, epsilon subunit n=3 Tax=Thermotogaceae RepID=A7HLA2_FERNB Length = 188 Score = 105 bits (263), Expect = 6e-22, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 54/182 (29%), Gaps = 18/182 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 VD+ETTG+D +E+ ++ + G+ + + V A ++ Sbjct: 7 YCCVDIETTGIDPSMGDRIIEIAIIPIYKGKIVKEWIYTSLVNPKVNIQAYAQSVHKISN 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + V+ + + N FD T + + Sbjct: 67 SDIENA----PELDEIISVVRKYSKDTIMVFHNAKFDLTFLDYAAKEVG-------QLPL 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + L A L+++A+ + + H A DA TA F Sbjct: 116 DVYYIDTLDISKAVY-----GRRRKLESLAQEMKISHKVTHRAYDDAFVTANVFIRFFDM 170 Query: 183 AA 184 Sbjct: 171 LG 172 >UniRef50_B8HX99 Exonuclease RNase T and DNA polymerase III n=2 Tax=Chroococcales RepID=B8HX99_CYAP4 Length = 164 Score = 105 bits (263), Expect = 7e-22, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 21/175 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D ET + VGL+ V+ + + ++ + I+G Sbjct: 4 FVAIDFET--ANRAKESACAVGLVRVENLQIVQKAYYLICPPQ--PHFEFTHIHGIRWTD 59 Query: 65 LYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + W E+ + + A N FD +++ +Y +P Sbjct: 60 VAAQ----PTFGDLWSELHPLIAGTDFIAAHNAGFDRSVLHACCNSYGIPRPA------- 108 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 A ++ PT L V LG+ + + H A+ DA A A Sbjct: 109 -QNFICTVQLARRTWSLYPT---KLPDVCRFLGLELDHHH-ALSDAEACAQIVIA 158 >UniRef50_C6X5Z0 DNA polymerase III alpha subunit n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X5Z0_FLAB3 Length = 1567 Score = 105 bits (263), Expect = 7e-22, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 53/192 (27%), Gaps = 17/192 (8%) Query: 5 LIVVDLETTGLDYDTA----------LPVEVGL-LNVDTGESLYFVPHITVEQLAAADPK 53 ++ D ETTGL + V++ L+ G L +I Sbjct: 18 YLIFDTETTGLPKNYNAPLTDSDNWPRMVQIAWQLHDRDGNLLENQDYIIKPDGYDIPFN 77 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSM 112 A I+G + + E E + L+ G N FD I + S+ Sbjct: 78 ASRIHGISTKMAHAEGRD---LREVLIEFGEVLKKAEVVAGHNIDFDYKIAGAEYHRQSL 134 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPVVNRHSAIGDAAA 171 + L G + L+ + H+A D A Sbjct: 135 DNILEKIPSADTMEL-GTDYCKLGGGKNGRYKSPKLEELYTTLFNERFDEAHNAAADVNA 193 Query: 172 TAFCFDMLRHTA 183 TA F + Sbjct: 194 TAQIFFEMMRLR 205 >UniRef50_D1Y3R1 Putative DNA polymerase III PolC-type (PolIII) n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3R1_9BACT Length = 351 Score = 105 bits (263), Expect = 7e-22, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 17/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNV-DTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+E+ G Y P+E+ + G+ L + ++A ++ G Sbjct: 15 YVVLDVESQG--YARFCPIEISAVRFAPDGQCLDAYSSLVRPRVARVSRYVSDLTGITTD 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRV 122 + R L G ++D++ + G D I+ Sbjct: 73 MVRRAPLP----REVIGSLRDFIGDSVIVGHAVAENDLPIIDHFCQELYHARLE------ 122 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D +A T L A+AE + H A D TA + + H Sbjct: 123 --NLYVDTFYWAQALFPALGTGHYNLKALAEHFVIDAQTFHRAEADCRTTARLYQ-ILHD 179 Query: 183 AAAHL 187 AA L Sbjct: 180 AAQRL 184 >UniRef50_A3HVK4 DNA polymerase III, epsilon subunit n=1 Tax=Algoriphagus sp. PR1 RepID=A3HVK4_9SPHI Length = 223 Score = 105 bits (263), Expect = 7e-22, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 9/166 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING-YYER 63 +V+D ETTGL+ + G + ++ + + D K + ++G Sbjct: 39 FVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWYLKSSKKDFKTIPVHGLIGNE 98 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 V ++ N G + FD ++ + + + Sbjct: 99 E-------AVPLEQFAKRVLEYFENNILVGHHLGFDLEMLEKALKPFGLDKIQNKCIDTM 151 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 L N + LD++ +R + +RH+A GDA Sbjct: 152 -SLAIRLDHGLMADRNYIDFKDYSLDSLCQRYDIKTDDRHTAGGDA 196 >UniRef50_B9NP01 Exonuclease n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NP01_9RHOB Length = 334 Score = 105 bits (262), Expect = 8e-22, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 17/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D+ET + D + ++G V G+ + + DP + I+G Sbjct: 45 RFVALDVET--ANSDASSICQIGFA-VSDGQGTILTFGTLIHPETSFDPFNIGIHGID-- 99 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 T + +L + + FD V Y +P ++ Sbjct: 100 --ADAVSTAPVFPEVLQTFRAFLERHPLVQHSS-FDKRAVNAACDRYDIP-------KLR 149 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + + + GL + E LG+ + H AI DA A A L A Sbjct: 150 SNWHDSVVMARRAWPELKGNGGHGLANLKEVLGLEF-DHHDAIEDAKAAAHVVL-LAEEA 207 Query: 184 AAH 186 Sbjct: 208 TGK 210 >UniRef50_B9YE07 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YE07_9FIRM Length = 187 Score = 105 bits (262), Expect = 8e-22, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 19/174 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 + +D ET + VGL D GE ++ + A P ++I+G Sbjct: 2 KWAAIDFET--ANPSPMSACAVGLTVFDEGEMVFSDSWLIRPHPYYDAFYPSFIDIHGIT 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++ WL G N FD ++A Y + Sbjct: 60 PDQVADA----PFFPKVYEQLKPWLDGGVLCAHNAGFDMKVLASCCSLYRLELPDAPYF- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + L+ V + +G+ + + H A DA A Sbjct: 115 ---------CTVKLSRKVYPYLKHHRLNDVCDYMGIQL-DHHDAGSDARGCALI 158 >UniRef50_Q6VY79 Putative uncharacterized protein n=1 Tax=Streptomyces phage VWB RepID=Q6VY79_9CAUD Length = 263 Score = 105 bits (262), Expect = 8e-22, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 54/184 (29%), Gaps = 10/184 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ DLETTG+D + V +++ + L + A ++G Sbjct: 6 RMVAFDLETTGVDVEQDRIVTAAAIDLGAEKPLTLEW--LADPGIEIPEGATAVHGITTE 63 Query: 64 GLYREA-LTEQQTAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + G G N +D T++ R+ Y +P + Sbjct: 64 HAREHGERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYELPLLQDRLDG 123 Query: 122 VWHHRLA----DLAAYAAGKLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATAFC 175 H + D K + L +A+ +P H DA A Sbjct: 124 TPLHVIDTRVLDQHCLPYRKRVSETQGARQLITLAQVYSLPWDAEAAHGCSYDALMAARI 183 Query: 176 FDML 179 + Sbjct: 184 AYRI 187 >UniRef50_Q4UJH2 DNA polymerase III, epsilon subunit-like protein n=5 Tax=spotted fever group RepID=Q4UJH2_RICFE Length = 377 Score = 105 bits (262), Expect = 9e-22, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 26/176 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV---DTGES--LYFVPHITVEQLAAADPKAMEINGY 60 I +D ETTGL ++ +E+G++ + G + + + + E+ G Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQQPIPLRITELTGI 185 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + +A+ + A + + + N +FD + + Sbjct: 186 TDEMVQGKAIDQ----EAVTQFLE--NVDIIIAHNASFDRPFFDKMFLHLP--------P 231 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + W AD+ A E L+ +A + H A+ D A Sbjct: 232 KAWGCSRADIDWKAE------KIESHKLEYLAYKYNF-FYEGHRAVTDCLAGLHLL 280 >UniRef50_C8PWB9 DNA polymerase III subunit epsilon n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWB9_9GAMM Length = 215 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 19/188 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVP--HITVEQLAAADPKAME 56 A + + +DLE TGL+ + VG + V G + + + Sbjct: 38 ANEWVSLDLEMTGLNAKQDYILSVGAVQVRKESNGFVIDTDSALSLVCRPPVMPTHDTIV 97 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA---RQRVTYSMP 113 I+G + ++ L+ G D + + + + Sbjct: 98 IHGLRPIDVDNGL----SYDEMLTQLLPMLKNRPIIGFCVDMDMAFLNAIAKPFLGVELA 153 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + V R++ G+L L+ + E +P + H+A+ DA TA Sbjct: 154 NKLVDVSRLYQQNQHRHDPSQVGQLPH-------LNQLLEEYQIPRLPAHNALNDAIMTA 206 Query: 174 FCFDMLRH 181 F L Sbjct: 207 MLFTHLMQ 214 >UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteobacteria RepID=Q1QT40_CHRSD Length = 495 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 53/197 (26%), Gaps = 14/197 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEIN 58 + D ET G D P + + D+ + + P+A I Sbjct: 7 EPTFLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHPQACLIT 66 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFSP 116 G + R L E + A + G N FD + + P+S Sbjct: 67 GITPQAARRRGLAEIEFAARIHAEMSVPGTCSL-GYNTLRFDDEVSRHLFYRNFIDPYSR 125 Query: 117 LTVGRVWHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIGD 168 L D+ D L+ + G+ H A+ D Sbjct: 126 EWQNGNSRWDLIDVVRTYHALRPDGIEWPTREDGAPSFRLEDLTAANGIEHAGAHDALAD 185 Query: 169 AAATAFCFDMLRHTAAA 185 AT +L+ A Sbjct: 186 VRATIELARLLKARNAQ 202 >UniRef50_C0GGY8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGY8_9FIRM Length = 198 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 47/177 (26%), Gaps = 26/177 (14%) Query: 6 IVVDLETTGLDYDTALPVEVG----LLNVDTGESLYF-VPHI-TVEQLAAADPKAMEING 59 VD+ETTGL VE+ D+GE ++ E P A ++G Sbjct: 13 CFVDVETTGLSPRKEEIVELAICLFAYRRDSGEITRIVDRYVGQREPGVPVSPGAARVHG 72 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + L + N +FD VAR Sbjct: 73 LRMADLRGKQLDTARIEAILH------SAEFIVAHNASFDRGFVARLFPVSG-------- 118 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 R L + + GL + + H A D AT Sbjct: 119 ------RKQWLCSMSGIDWKGKGFPSRGLQNLLRAHRIDAGRAHRAEDDVLATLKLL 169 >UniRef50_Q04A97 DNA polymerase III, epsilon subunit related 3'-5' exonuclease n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q04A97_LACDB Length = 261 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 59/179 (32%), Gaps = 21/179 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V DLETTG +++G L V +++ V L + + G Sbjct: 7 DYTVFDLETTG-----KKIIQIGALKVRDDQTV-AKFSTYVNPLEKINDYVSHLTGISNY 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRV 122 + D++ +T G N +FD ++A Y + L + Sbjct: 61 QTDAA----PLIDEVMPDFLDFVGDDTLVGHNILSFDCNVLADN--GYPVANPKLDTLLL 114 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + +Y L DP L + E G+ + N H AI D + LR Sbjct: 115 AN-------SYKKRGLFADPIPNVRLSTMKEYYGINI-NSHIAISDCITNNIVYQKLRD 165 >UniRef50_Q0VMJ4 Nuclease, putative n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VMJ4_ALCBS Length = 173 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 63/178 (35%), Gaps = 10/178 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 ++ +D ETTGLD TA V + + + G L + + + ++ I+ Sbjct: 1 MVAIDCETTGLDSRTAELVSIAAVVIKEGRVLSSQSLNVKLAAPDSLREDSICIHRLRPV 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A A + + G AFD ++ R P + Sbjct: 61 DLEGGA----SIREALEALLALIDNRPLVGWCVAFDVAMINRYLRPLMGFDLPNDTLELS 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L D T DA+A L VPV+ RH+A GDA +A + L+ Sbjct: 117 A-----LYQRKMRYWQPDITPDLRFDAMASALQVPVIERHTARGDAVTSALMYLQLQK 169 >UniRef50_Q7NC15 PolC n=1 Tax=Mycoplasma gallisepticum RepID=Q7NC15_MYCGA Length = 1501 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 28/189 (14%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI---------TVEQLAAADPKAM 55 ++ D+ETTGL+ +E+ + V ++ ++ Sbjct: 417 FVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEFVQIGKFEKLIKNKKPLSKFTT 476 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSN-PAFDSTIVARQRVTYSMP 113 ++ G + L Q E ++++ + N FD + + Y + Sbjct: 477 QLTGLKDSDLKDA----QDEKTVLEEFVNFIQKDDVLVAHNGIDFDFIWINTKLDKYKLK 532 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAA 171 + + L L + + L+ ++ +LG H A D Sbjct: 533 P-------LDNPMLDSL----RLAYQLYQFKRYTLENLSLKLGYEYDKTLAHRANYDTEL 581 Query: 172 TAFCFDMLR 180 A C ++ Sbjct: 582 LAKCLMIML 590 >UniRef50_A0KJY7 DNA polymerase III, epsilon subunit n=2 Tax=Aeromonas RepID=A0KJY7_AERHH Length = 208 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGY 60 A + + +D ETT LD A V +G + + L I V+ A+ ++ I+G Sbjct: 28 ADEWVALDFETTSLDPAQAEIVAIGAVRIQGNRVLTGEALSIRVQAPASLSEHSVVIHGL 87 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPL 117 + L + A + ++ G + A+D I+ + + Sbjct: 88 RHQDLQQGM----TLEAALRLLLAFIGPRELVGYHIAYDLRILNLACQRCWGLTLAQRGI 143 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 V R++H + D L A++ +G+P + H A+ DA A F Sbjct: 144 EVSRLYHDH--------LYRRYPDAAIDLHLAAISSHIGLPTLPAHDALSDAITAALIFL 195 Query: 178 MLRH 181 L Sbjct: 196 RLTR 199 >UniRef50_D1PSL1 Putative DNA polymerase III, epsilon subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSL1_9FIRM Length = 318 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 16/186 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D+ETTGLD++ ++V +L++DTGE L ++ P+A +N + + Sbjct: 120 VSIDIETTGLDFNQDEILQVSILDIDTGEVLL-DSYVKP-YFTEDWPEARRVNHITKEMV 177 Query: 66 YREALTEQQTAVAWGEVQDWL-RGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRVW 123 + L + T G N FD+ + Y F+ T+ Sbjct: 178 CNA----PYIYELLPRLNQVLAQVKTIVGYNFTGFDNGFLT----RYGASFNDETIVEDL 229 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATAFCFDMLRH 181 + A + + K + L A+ G H+++ D ATAFC+ + Sbjct: 230 SNIFAAIYGEFSPKHGDFKFKN--LSTCADYFGYDWGEETAHNSLADCRATAFCYKKTQE 287 Query: 182 TAAAHL 187 L Sbjct: 288 EMYQEL 293 >UniRef50_B9L7I4 Exonuclease family n=2 Tax=Nautiliaceae RepID=B9L7I4_NAUPA Length = 271 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 60/183 (32%), Gaps = 15/183 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++ V D ETT + + ++ D + + A +A E++ + Sbjct: 102 QKVGVFDTETTDI---YGYIISYAVVIQDMQSMDTEEIYDFLNPKAKISEEAYEVHKIKQ 158 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A E + G N +D ++ R+ + + + Sbjct: 159 EDIEHK----PTFAEKKDEFLQIFDNLDMVVGHNVLYDFGVLKRELERAEHFPNIIDIP- 213 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLR 180 + D Y+A + ++ ++ L+ G N H A+ D T F+ L Sbjct: 214 -----IFDTMYYSADVVVLEKKKMPRLEECVAFFFGKQNANYHDALEDVKMTLKVFNRLL 268 Query: 181 HTA 183 Sbjct: 269 QEK 271 >UniRef50_C9LQ99 Exonuclease n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQ99_9FIRM Length = 207 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 57/182 (31%), Gaps = 17/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ET +A +G+ D E + DP M +NG Y Sbjct: 2 KYAAIDFETAYWGPGSA--CSLGISVSDGNEITEEWYRLIRPYRMNFDPICMRVNGIYPD 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +E W EV + L G+ N FD ++A Y +P G Sbjct: 60 DVEKE----PAFPAFWKEVAERLEGSIVFAHNARFDMGVLASVLDVYDLPDIHFLYGD-- 113 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 A ++ LD VA LG N H A+ DA A Sbjct: 114 --------TVAVSRMLWKELPNHKLDTVAGSLGYDF-NHHQALDDARACEMIVRKAVEKT 164 Query: 184 AA 185 A Sbjct: 165 EA 166 >UniRef50_UPI0001C31300 Exonuclease RNase T and DNA polymerase III n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31300 Length = 259 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 49/164 (29%), Gaps = 4/164 (2%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++L D+ETTG+D + V +++ V+ A ++G Sbjct: 2 RRLAAFDIETTGIDPQSDRIVT-AAVSLAGDARPTVDHDWLVDPGVEIPAGATAVHGITT 60 Query: 63 RGLYREALTEQQTAVAWGEVQ--DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + V L N FD T + R+ + + VG Sbjct: 61 DHARAEGRASAEAVEEITAVLAAQLLDHVPVIAFNARFDLTCLDREARRHGVVPLVDRVG 120 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + D + + L AV E V + H+ Sbjct: 121 GPDGLIVVDPFVLDK-QFDRYRRGKRTLGAVCEHYRVRLDAAHT 163 >UniRef50_Q4V274 Possible exonuclease n=3 Tax=Bacillus cereus RepID=Q4V274_BACCZ Length = 287 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 24/179 (13%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGL +E+ ++++ G+ L V+ +A I+G + Sbjct: 131 FVILDTETTGLT-LRDQIIEICVIDLT-GKILLNS---LVKPTINIPAEAASIHGITNKM 185 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 ++ + E+ + G T N FD ++ + ++ F Sbjct: 186 VHDA----PSWIEIYKELCEVTAGKTLLIYNAEFDLGMIESTCIANNVEFKNFKS----- 236 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +D L E L + H A+ D A L++ Sbjct: 237 -----TCIMKMYADYVDSKRWISLGDATE-LTIK----HRAVADCFAVLELLQQLKNNH 285 >UniRef50_C0WKD3 DNA polymerase III epsilon subunit n=5 Tax=Corynebacterium RepID=C0WKD3_9CORY Length = 470 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 50/183 (27%), Gaps = 14/183 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 + VD+ET + + ++G + G + + I+G Sbjct: 125 DFVAVDVET--ANDNWGSICQIGAVRYRDGGETASQSWLCTPPPGLEHFAEINISIHGIT 182 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A A E+ D++ + N FDS+ + + + + Sbjct: 183 AADVEGAM----PFATAAAELFDFIGSDVIVAHNVQFDSSALRSGLLAAGADVPTVPLAC 238 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 A + + L V + LG H A DA A L Sbjct: 239 SLALSRD------ASRQGVISVANHKLPTVVKHLGGASFTHHDATEDARAAGTIITGLAQ 292 Query: 182 TAA 184 Sbjct: 293 RFG 295 >UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRC0_9RICK Length = 473 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 15/192 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGYYE 62 + D ETTG ++VG + V+ F +++ +P A+ +N Sbjct: 3 YVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEARCSLKPGTVPEPGALLVNKTTP 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 L + L+ E + F G N +FD + + Sbjct: 63 DMLKKTNLSHFGMVQMMKETFEKWSPAMFIGYNSLSFDEEFLRKTFFKS--LTDVYLTNT 120 Query: 122 VWHHRLADLAAYAAGKLNIDPTEL----------EGLDAVAERLGVPVVNRHSAIGDAAA 171 + R L + L LD +A G+ N H A+GD A Sbjct: 121 NGNKRGDILGLVRSAHLYYPECLKTPISEKGNAVFKLDQIASMNGISHDNAHDAMGDVLA 180 Query: 172 TAFCFDMLRHTA 183 T ++ A Sbjct: 181 TMGMAKIIADKA 192 >UniRef50_UPI0001B52926 exonuclease, RNase T and DNA polymerase III n=3 Tax=Fusobacterium RepID=UPI0001B52926 Length = 191 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 16/193 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEV-GLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++I +D ET G++ + + +++ G++ +D + F +I + + + KA+E+ G Sbjct: 1 MN-KIIFIDTETGGVNPEKSALIQLSGIIRIDKKDVEKFNFYIKPFENSEVNEKALEVQG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGN----------TFAGSNPAFDSTIVARQRVT 109 L E E+ + + + L AG N FD I+ Sbjct: 60 RTLDELKAEKYIEE--KEVYKQFINLLDKYIDKYDKTDKFIVAGYNVRFDVDILKALFQR 117 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 + F + L + + E L+ + G+ + H ++ D Sbjct: 118 HGNNFLFSYLDSSMLDPLYSIRLLQIAGIL-PVLENNKLETWCKHFGIELK-AHDSLEDI 175 Query: 170 AATAFCFDMLRHT 182 AT L Sbjct: 176 VATKKLIGKLISL 188 >UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitrosomonas RepID=Q0AEW3_NITEC Length = 486 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 51/199 (25%), Gaps = 15/199 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDT--GESLY-FVPHITVEQLAAADPKAMEIN 58 L D ET+G + PV+ L D E V + + P+A + Sbjct: 5 TSTLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLT 64 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFSP 116 G + L E + G N FD + P++ Sbjct: 65 GITPQMAATRGLPEPEFIALIHAQLAQPGTCG-VGYNTLRFDDEVTRFALYRNFYDPYAR 123 Query: 117 LTVGRVWHHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSAIGD 168 + DLA L+ + G+ + H A+ D Sbjct: 124 EWQSGNSRWDVIDLARMTFALRPEGINWPVNGEGKPSFRLEDITAANGLMHDSAHDALSD 183 Query: 169 AAATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 184 VRATIAL-ARLLRDRQPRL 201 >UniRef50_C2S1I6 DnaQ family exonuclease/DinG family helicase n=3 Tax=Bacillales RepID=C2S1I6_BACCE Length = 99 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 1 MAKQLIVVDLETTGLDYD--TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M+K+ +VVDLETTG + ++ + V+ GE L + P E+ Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSF-INPKREIPPFITELT 59 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTI 102 G E + + V + L+G F N FD Sbjct: 60 GIDESMVKQA----PLFEDVAPMVVELLQGAAFVAHNVHFDWNF 99 >UniRef50_Q47RH7 DNA polymerase III, epsilon subunit n=1 Tax=Thermobifida fusca YX RepID=Q47RH7_THEFY Length = 210 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 20/167 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK---AMEI 57 M +D ET + + VGL+ V G + V A D + + Sbjct: 1 MHDTWTAIDFET--ANRNQGSVCAVGLVRVTDGRIVDRYT-TLVRPPAPVDHFEQDNIAV 57 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + ++ G+ F N FD ++ +P L Sbjct: 58 HGITPEHVADA----PAWPQVHTTILEFAAGSPFVAHNAVFDMGVIRAACAHAGLPEPSL 113 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + + L V +G + H+ Sbjct: 114 HYA----------CSLDIARRTWPALRNHRLPTVCRTIGYDLRRHHT 150 >UniRef50_A7HF37 Exonuclease RNase T and DNA polymerase III n=10 Tax=Bacteria RepID=A7HF37_ANADF Length = 213 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 55/187 (29%), Gaps = 17/187 (9%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH---ITVEQLAAADPKAMEINGYYER 63 +D+ET GLD + +G++ V G + + ++ + + Sbjct: 31 AIDVETGGLDAKRDPLLAIGMVPVRAGRIRLGECYRTLVRPHAGTRITSASVTAH----Q 86 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + EV+ R + A D + R + + V Sbjct: 87 LVSNDFEAAPPLGDVLPEVERRAREGALLFHHAAIDVAFLRRDFARTGLTWPSCPVVDTA 146 Query: 124 HHRLADLAAYAAGKLNIDPTEL----EGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + +L L LG+P H A+ DA ATA F L Sbjct: 147 RLLV------RHAQLRDPTRPRDHIALNLSVARAELGLPEYQAHDALSDAIATAELFLAL 200 Query: 180 RHTAAAH 186 R A Sbjct: 201 RMALGAR 207 >UniRef50_C5BKW5 Putative exonuclease n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BKW5_TERTT Length = 235 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 14/187 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVD E +GLD + + + +G + ++ + + + I+G + Sbjct: 40 ENRFLVVDCEMSGLDANRSQLLSIGWVVIENARITHASGKHLLIHADRGAGDSTRIHGLH 99 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + G+ + D + + Sbjct: 100 DATIAGAKSAAAA----ITLLAKQVPGSVLVFHHAPLDLRFLQQTAYENFRCPLLFG--- 152 Query: 122 VWHHRLADLAAYAAGKLNIDPTEL-EGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDML 179 D +L + E L ER G+ P+ H+A+ DA ATA Sbjct: 153 -----YVDTMLIEQRRLQLQGAESGLRLAQCRERYGLPPISGHHNAMTDARATAELLLAQ 207 Query: 180 RHTAAAH 186 Sbjct: 208 TSYLGGA 214 >UniRef50_Q8EDA7 Exonuclease n=1 Tax=Shewanella oneidensis RepID=Q8EDA7_SHEON Length = 181 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 14/164 (8%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYR 67 +DLE TGLD + +GL+ ++ G + Q+ + ++ I+G + L + Sbjct: 1 MDLEMTGLDPFKDQILSIGLVPIENGAIPLSHAQQKLVQIRGSVGQSAIIHGILDNHLTQ 60 Query: 68 EALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP---FSPLTVGRVWH 124 A + RG + D + + +T + + Sbjct: 61 AV----SIEEAMAWFMEQTRGRVLVAHHSPLDCRFLQQDILTIYHQAVLLPAIDTLVLEK 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 RL + L A ER G+P+ HSA+ D Sbjct: 117 QRLLREHSVLK-------EGSLRLGACRERYGLPIYGAHSALTD 153 >UniRef50_B2A6Q7 Exonuclease RNase T and DNA polymerase III n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6Q7_NATTJ Length = 170 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 15/146 (10%) Query: 30 VDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN 89 ++ GE + + P + I+G + E + W E+ +L N Sbjct: 1 MEAGEIIEKQHWYIRPKPFYFHPYNVYIHGIKPEDVRDE----PDFSEIWREISTYLENN 56 Query: 90 TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLD 149 N +FD +++ Y + + L + + GL Sbjct: 57 LVVAHNASFDISVLRHVLDLYDLDYPQ----------FDYLCTKKLAEKQWPHLDKYGLK 106 Query: 150 AVAERLGVPVVNRHSAIGDAAATAFC 175 ++A+ L V H A+ DA A A Sbjct: 107 SIAKFLDVKFK-HHDAMEDAYACAQI 131 >UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YII7_9FLAO Length = 1555 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 58/192 (30%), Gaps = 19/192 (9%) Query: 5 LIVVDLETTGLDYDTA----------LPVEVGLLNVDTGESLYFVPHITVEQLAAADPK- 53 ++ D ETTGL + V++ D +L ++ P Sbjct: 2 YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGNLIENQDYIIKPEGYDIPFN 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSM 112 A I+G + E E L G N FD IV + ++ Sbjct: 62 AARIHGITTKIANEEGRD---LQEILEEFSKVLEKVRVVSGHNVEFDYNIVGAEFYRKNL 118 Query: 113 PFSPLTVGRVWHHRL-ADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGDAA 170 + + L AD G+ + L+ + E+ G H+A D Sbjct: 119 KDNLQEKPKADTMILGADFCQLGGGR--GGRFKPPKLEELYEKLYGSKFDEAHNAAADVN 176 Query: 171 ATAFCFDMLRHT 182 ATA F + Sbjct: 177 ATARAFFEMVRI 188 >UniRef50_B0G161 DNA polymerase III, epsilon subunit n=1 Tax=Dictyostelium discoideum RepID=B0G161_DICDI Length = 483 Score = 103 bits (258), Expect = 3e-21, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 18/180 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++I DLET+G+ + +E+G + + G + + A P + +I+ Sbjct: 300 RVICFDLETSGVT-SSDTIIEIGAVELIDGCRTGVIFQSYAQPKAQIHPVSEQIHQLTSL 358 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ + DW+ + N AFD I+ ++ + Y++PF+ Sbjct: 359 QL----MSAPPIEIILASFMDWVGNSPLVAHNLAFDKRILIQELIRYNIPFNIDH----- 409 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP---VVNRHSAIGDAAATAFCFDMLR 180 K + LD+++++L + + H A+ D+ A + L Sbjct: 410 ----ICFCTMKYFKKIYNGL-NYSLDSISQKLKINKLLLRKTHGALIDSEILAIIYTHLL 464 >UniRef50_B1JN65 Exonuclease RNase T and DNA polymerase III n=4 Tax=Enterobacteriaceae RepID=B1JN65_YERPY Length = 217 Score = 103 bits (258), Expect = 3e-21, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 11/186 (5%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +++D ETTGL + A +E+ +++ L V+ + A +A I+G Sbjct: 41 LKRNYLILDTETTGLG-NDAEIIEISIIDCTGKILLD----TLVKPIKAIPAEATAIHGI 95 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + T N +FDS ++ + + P Sbjct: 96 TNDIVADA----PTWRDIHWQFMVLTNDRTLLIYNASFDSRLIFQTAAANNCPVPEKKYI 151 Query: 121 RVWHHRLA-DLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDM 178 + Y + + + L AE+ GV + H A+ D T Sbjct: 152 FDAECVMESYAKYYGQWDQKRNKFKWQRLSNAAEQQGVAIDGTPHRALADCKTTLGIIRA 211 Query: 179 LRHTAA 184 + + Sbjct: 212 MAGVKS 217 >UniRef50_D2MNZ8 Exonuclease n=1 Tax=Bulleidia extructa W1219 RepID=D2MNZ8_9FIRM Length = 186 Score = 103 bits (258), Expect = 3e-21, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 21/175 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA---AADPKAMEINGY 60 +++ VD+ET D +GL ++ G L + ++ A + +++G Sbjct: 3 RVVAVDVET--ASSDHRSMCAIGLSVLENG-VLEEAFYSLIKPAANANHFEYFNTKVHGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + ++ L N FD +++ + P +T Sbjct: 60 HPKDVQDA----PTLPEVYPTIKSLLESGIVVAHNAVFDVSVIKNCCLNTGCPVPKVTYF 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + LD VA L +P+ + H A DA A Sbjct: 116 D----------SVPLSRRAFPLLVNHKLDTVARYLKIPLDHHH-AGSDAYACLAI 159 >UniRef50_B0PH29 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH29_9FIRM Length = 866 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 17/167 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVD--TGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++V D+E+TG D T V++ + + GE++ F + + A ++G+ Sbjct: 511 RVVVFDVESTGADVYTDDIVQIAAVRLSPGGGEAVRFERFLCPSRPVGASE---RVHGFS 567 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L A + D+ +G G N FD TI ++ +V Sbjct: 568 DAFLAENGGAP---CAALEDFLDFSKGCVLVGHNVMFDLTITSQNLARAG------SVQT 618 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + + L + + L V+ LG H+A+ D Sbjct: 619 LSNVWYDTLDI---SRRYMKDLPNHKLSTVSAALGAAHDPSHNAMDD 662 >UniRef50_C5NYM3 ATP-dependent helicase DinG homolog n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYM3_9BACL Length = 616 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 19/183 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K VVD+E T D ++ +D + ++ E+ G Sbjct: 1 MNKLFCVVDIELT----DDKEIIQFSATKLDENFREILSINYYIQPKKQVSTFVTELTGI 56 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L+ + E+ ++++G+ D I+ ++ + + Sbjct: 57 SNEMLHDK----PFFEDVAHELYNYIKGDILVCHGLPSDYVILKKRFHDVGILYKAK--- 109 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGDAAATAFCFDML 179 L +L + L ++ LG+ H+A D T + Sbjct: 110 -------LSLDTVELSRLFLPSQTSYRLSDLSNSLGLYTGDQYHNAAIDVKVTVKLLKEI 162 Query: 180 RHT 182 Sbjct: 163 ARK 165 >UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3XEM3_9RHOB Length = 459 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 16/198 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYY 61 + DLETTG+ + P++ + D E + P+A+ + Sbjct: 2 DFVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNIRCRLAPHILPSPQALVVTRVT 61 Query: 62 ERGLYR-EALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 L + + + E + + G N FD ++ + ++ + Sbjct: 62 PDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQ-NLSPNIYAT 120 Query: 120 GRVWHHRLADLAAYAAGKLNIDPT----------ELEGLDAVAERLGVPVVNRHSAIGDA 169 + R L A A + LD +A G N H A+GD Sbjct: 121 QFNGNTRFDILPAVYAAYVRHPGLLVWPTDDTGRRSFKLDRLAPANGFNAHNAHDALGDV 180 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L T + L Sbjct: 181 EATIHI-ARLIATRSPAL 197 >UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellular organisms RepID=A5FKC9_FLAJ1 Length = 1510 Score = 103 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 54/194 (27%), Gaps = 22/194 (11%) Query: 5 LIVVDLETTGLDYDTA----------LPVEVGLLNVDT-GESLYFVPHITVEQLAAADPK 53 ++ D ETTGL +++ D G+ + ++ + Sbjct: 2 YLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLIEHQDYLVKPEGFNIPYD 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQRVTYSM 112 A I+G + + A + + G N FD I+ + + Sbjct: 62 AERIHGISTELAEADGI---TLAEVLEKFNIALSKTKFIVGQNLGFDVNIMGAEFHRMGV 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER----LGVPVVNRHSAIGD 168 ++ + + +L L + E P H+A D Sbjct: 119 ESQMASMPVLDT---CTEVTASLLQLPGGRGGKFKLPTLTELHSYLFDQPFAEAHNATAD 175 Query: 169 AAATAFCFDMLRHT 182 AT CF L Sbjct: 176 VEATTRCFLELVRR 189 >UniRef50_Q2W5M2 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease n=3 Tax=Magnetospirillum RepID=Q2W5M2_MAGSA Length = 216 Score = 103 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 29/198 (14%) Query: 4 QLIVVDLETTGLD-YDTALP-------------VEVGLLNVDTGE---SLYFVPHITVEQ 46 +LI +D ETTG A +E+G + + GE H ++ Sbjct: 13 RLIAIDAETTGFRVPTAAEIKKMPKGLRLPGVMIEIGCVELLRGEDGWKTGESWHRRIQP 72 Query: 47 LAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ 106 ++ ++G L Q E + ++ + + + + + Sbjct: 73 GGPIAKASIAVHGITPAELKDA----PQFRDVLDEFETFIGQDMLLAHSAENEIEFLNFE 128 Query: 107 RVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN---RH 163 V + + LD + +RL + + H Sbjct: 129 YARVG----RCGFDDVIFSDNDFVCTQELSRQFFPGVPG-SLDVLCDRLWIDRSDRFEHH 183 Query: 164 SAIGDAAATAFCFDMLRH 181 A+ DA TA F + Sbjct: 184 GALLDAILTAEAFMKMAG 201 >UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas RepID=B4SPA5_STRM5 Length = 479 Score = 103 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 51/194 (26%), Gaps = 17/194 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGES---LYFVPHITVEQLAAADPKAMEI 57 MA + DLET G D + + D + + P A + Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFS 115 G + E ++E + E G N FD V P+ Sbjct: 61 TGITPQQALAEGISEAEAFDRINEQLSRPGTCAL-GYNTLRFDDEFVRYGLFRNFHDPYE 119 Query: 116 PLTVGRVWHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIG 167 L D+ D L+ +AE V + H A+ Sbjct: 120 REWRNGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALS 179 Query: 168 DAAAT---AFCFDM 178 D AT A F Sbjct: 180 DVRATIGMARLFKQ 193 >UniRef50_Q8KQK8 DNA polymerase III epsilon subunit (Fragment) n=3 Tax=Candidatus Tremblaya princeps RepID=Q8KQK8_TREPR Length = 212 Score = 103 bits (256), Expect = 5e-21, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 52/164 (31%), Gaps = 14/164 (8%) Query: 15 LDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQ 74 L EVG + + G H + A ++G + L T+ Sbjct: 1 LSPRYHRLAEVGCVEIACGRITGNYFHAYINPRQRMTRGAQAVHGLRDEFLA----TQPA 56 Query: 75 TAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYA 134 + + +L +T G N +FD + T + R H + + A Sbjct: 57 FSAIAQRLLFFLCQSTLVGHNLSFDLNFLDAGLATAGFMPAA----RYCHGVIDTMCHLA 112 Query: 135 AGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCF 176 LDA + LGV + RH A+ DA A F Sbjct: 113 Q----RGSRRRFSLDACCDMLGVRRGDRARHGALVDAVLLAEAF 152 >UniRef50_Q6A708 Putative DNA polymerase III epsilon subunit (Exonuclease) n=1 Tax=Propionibacterium acnes RepID=Q6A708_PROAC Length = 236 Score = 102 bits (255), Expect = 5e-21, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 51/188 (27%), Gaps = 20/188 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VD ET +V ++ V G+ + + + + ++G Sbjct: 66 EPSFVAVDFETA-NRMGGVSACQVAMVKVCDGQIVDRLNTLIRPPKGWDSFEFTYLHGIS 124 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFD---STIVARQRVTYSMPFSPLT 118 + V ++ G T N AFD + T ++P Sbjct: 125 AADVADA----PSWTNIADTVSHFVDGVTVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFC 180 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R + L Y + L N H A DA A A Sbjct: 181 SYRTAQRLIPGLPNYKLPTVLHACAPNYQL------------NHHRADSDAEACALIVCE 228 Query: 179 LRHTAAAH 186 L+ A A Sbjct: 229 LQRRAQAS 236 >UniRef50_C5WTF0 Putative uncharacterized protein Sb01g029940 n=3 Tax=Andropogoneae RepID=C5WTF0_SORBI Length = 435 Score = 102 bits (255), Expect = 5e-21, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 21/180 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA----ADPKAMEIN 58 ++++ +D+ET+ + +E G + V + + + T+ + A + Sbjct: 18 EEIVFLDVETS-TPPR--VLLEFGAVVVCSRRLVDVSSYATLVRPADPDAAVPDPTARCS 74 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPL 117 G + +V D L G +AG N FDS I+ P Sbjct: 75 GITRDAVADA----PPFRDVADKVYDVLHGRVWAGHNIVKFDSVIIRDAFAEIGRPPPEP 130 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + D + L ++A G+ RH ++ D Sbjct: 131 KG-------MVDTLPL-LTQWFGPRAGDMKLASLANYFGLG-KQRHRSLDDVKMNIDVLK 181 >UniRef50_A6CY65 DNA polymerase III, epsilon subunit n=1 Tax=Vibrio shilonii AK1 RepID=A6CY65_9VIBR Length = 197 Score = 102 bits (255), Expect = 6e-21, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 60/176 (34%), Gaps = 9/176 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+D ETTGLD +T + +G + + + + +E + IN Sbjct: 9 EYLVLDFETTGLDANTNTILSLGWVEIANFTVNVASAKQLFIESPNEVKAETAVINHIMP 68 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L A ++ + ++ V + + + Sbjct: 69 EMLQDGI----SLDSAMTQLFQAAKNKILIAHGSMIEAAFVDEYLTQ---KYGVSDLPVM 121 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 W LA + A +N D L +R G+P N H A+ DA ATA F Sbjct: 122 WLDTLAIEKSMALA-VNKDAEIDVRLSETRKRYGLPEYNGHEALIDAIATAELFLA 176 >UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Enterobacteriaceae RepID=A4W6Y1_ENT38 Length = 223 Score = 102 bits (255), Expect = 6e-21, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 32/178 (17%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 V+D ETTGL+ VE+ +++ G + V+ A +AM I+ E + Sbjct: 4 VIDTETTGLEGGPETVVELASVDIVDG-VICNPMSDLVKPGVAIGFEAMAIHHITEDMVE 62 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + G +L + + N FD + ++ Sbjct: 63 GA----PLLSEVIGR---YLGADAYVAHNAKFDKS-------------------KLPQID 96 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-----RHSAIGDAAATAFCFDML 179 + + + + + LG+ H A+ D TA + Sbjct: 97 APWICTAKLARSLLPEHKSHSNQYLRYSLGLKPEVPEGLYAHRALYDCYVTAELLLYM 154 >UniRef50_C0WBN5 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WBN5_9FIRM Length = 228 Score = 102 bits (255), Expect = 6e-21, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 16/181 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++V DLE G Y +E+ + VD V + + E+ G Sbjct: 54 DMVVFDLELAG--YAEDDIIEIAAIKVDFLGRQTAVFRELIRPRTKISKRVTEMTGITRD 111 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAF-DSTIVARQRVTYSMPFSPLTVGRV 122 + + Q ++ G+ G + + D + Y M + Sbjct: 112 MVKDK----PQLPEVLKRFFAFVEGSAVMGHDIGYNDIMAINLACRRYGM--------KA 159 Query: 123 WHHRLADLAAYAAGKLNIDP-TELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D + L+ + GL A+ +P+ H A+ D AT ++ + Sbjct: 160 FRPPFLDTSRLILRHLSREAVGGKTGLAALLAHFNIPIHRHHEALADCEATLLLYEAVAK 219 Query: 182 T 182 Sbjct: 220 E 220 >UniRef50_B2K016 Exonuclease RNase T and DNA polymerase III n=2 Tax=Yersinia pseudotuberculosis RepID=B2K016_YERPB Length = 233 Score = 102 bits (255), Expect = 6e-21, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 60/182 (32%), Gaps = 16/182 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGLD + A VE+ +++ L ++ L I+G + Sbjct: 60 YLILDTETTGLD-NAAEIVEISIIDCMGNVLLD----TLIKPLGFIPSDVEAIHGITNKM 114 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + ++ F N FD+ ++ + + + Sbjct: 115 VDNA----PHWCDIHEKFIEIIKSRNFVAYNSRFDTRLIYQSAEFSGVTTGADDIASASG 170 Query: 125 HRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDML 179 + + YA D + + L A A ++ V H A+ D T + Sbjct: 171 N--CAMLEYARFHGQWDSRQSDFKWQTLIAAAGQMNVITEGASHRALSDCKTTLGVIKAM 228 Query: 180 RH 181 Sbjct: 229 AG 230 >UniRef50_C3WAY8 Predicted protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAY8_FUSMR Length = 474 Score = 102 bits (255), Expect = 6e-21, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 57/185 (30%), Gaps = 20/185 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + I+V LETTGL++ +++ + ++ G + ++ +A ING Sbjct: 5 ENYIIVSLETTGLNHLVDEILKIEAIRIENGNIVD-TFKEFIKPKFEIPKEASRINGITF 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++ + + N F S + Y Sbjct: 64 EDVKN----SPSIEDVLDKFKNFRKKGDILVAYNAEFVSKFIGFNFKRYK--------NS 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++ H DL + + L VA L + N+ L++ Sbjct: 112 IFSHEFIDL--LSLVRYIYKNIPSYNLKYVATYLKIDSTNK----DKTIICYEILKNLKN 165 Query: 182 TAAAH 186 + Sbjct: 166 KIGDN 170 >UniRef50_Q68BL2 DNA helicase RecG n=2 Tax=cellular organisms RepID=Q68BL2_NANBA Length = 1341 Score = 102 bits (255), Expect = 6e-21, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 22/192 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IV DLETTGL + PVE+ +G F I + + KA E+ G Sbjct: 137 IVFDLETTGLSKEKDHPVEIAAEAPLSGR--TFSTLIRLADGMSISTKAEEVTGITTAQC 194 Query: 66 YREALTEQQTAVAWGEVQDWLRGNT----------FAGSNP-AFDSTIVARQRVTYSMPF 114 + A+ ++ G N FD ++ + + Sbjct: 195 KD--PSLPTFPQAYASFLRFIEAEMEDAAPGAFPLLVGHNIERFDLPLLLHCAKRFDVAA 252 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATA 173 + L L+A + E L + L + H A D T Sbjct: 253 P------LSARILDTLSASRSLLTGSAKPEAFNLTTLYGHLTRKEAIAAHRASADVKMTV 306 Query: 174 FCFDMLRHTAAA 185 L +A Sbjct: 307 AVLHALLEHSAG 318 >UniRef50_A7K3S7 DNA polymerase III, alpha subunit n=8 Tax=Vibrio RepID=A7K3S7_VIBSE Length = 226 Score = 102 bits (254), Expect = 6e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 16/182 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I++D ETTGL D A VE + ++GE + V+ + A I+G + Sbjct: 31 IIIDTETTGLGAD-AEIVEFTAICANSGEVIVDE---LVKPTCSIPADATAIHGITNEDV 86 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + L G N FD+ ++ + + +V ++ Sbjct: 87 KDAPDFHLMFS---NRFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQSVHDLFFK 143 Query: 126 RLADLAAYAAGKLNID-------PTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCF 176 A + + L + V V + H A+ D T Sbjct: 144 FCVPQCAMLWYAEFYGVWNEYHEDYKWQSLTNACAQQHVDVSDLIAHRALADCEMTRRLI 203 Query: 177 DM 178 Sbjct: 204 HA 205 >UniRef50_A1TI45 DNA-directed DNA polymerase n=4 Tax=Burkholderiales RepID=A1TI45_ACIAC Length = 221 Score = 102 bits (254), Expect = 7e-21, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 49/166 (29%), Gaps = 18/166 (10%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ V+D ETTG+ A EV ++ ++ G + + A P +++ G Sbjct: 1 MPSRIAVIDFETTGMTPSQGARATEVAIVLMEEGRPVDRFQSLM-RTGAWLPPFIIQLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L T E ++ N +FDS A + +P Sbjct: 60 ITPAMLD----TAPPAESVMREAARFVGDAPMVAHNASFDSRFWAAELARADLPAPHAFA 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHS 164 + L + LG+P H Sbjct: 116 -----------CTVLLSRRLYPEAASHQLGRIVAHLGLPPAARAHR 150 >UniRef50_A6VT55 Exonuclease RNase T and DNA polymerase III n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VT55_MARMS Length = 220 Score = 101 bits (253), Expect = 9e-21, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ET+GLD V G + + G V A ++ I+ + Sbjct: 27 DYLVLDIETSGLDPKQDHIVSFGWVCIHKGVIELDTARHIVLDSAQIGD-SVGIHMITDS 85 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ ++ ++ LR + + + T ++P ++ Sbjct: 86 DVQQQGKKQES---VLRYLRHLLRERVLVMHHAPMELGFLKHAWQTEALPSFSVS----- 137 Query: 124 HHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGD 168 D A K N L A ER G+P H A+ D Sbjct: 138 ---WLDTLAIERTKANRSQQPIQDGGFRLGACRERYGLPDYQGHDALTD 183 >UniRef50_Q1ZEA2 DNA polymerase III, epsilon chain n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZEA2_9GAMM Length = 237 Score = 101 bits (253), Expect = 9e-21, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 9/175 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 +VVD ETTGL + +G + + + + HI + + + IN + Sbjct: 50 FLVVDFETTGLIAKYNDIISIGWVEISNLQVVCASQEHIYINNDKKINHETAVINHIVPQ 109 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + +G + + Y F+ + +W Sbjct: 110 MLRQGV----SLHDAINALLIKAKGKILVVHGKVIEQCFLDFYMHQY---FALPKIPLLW 162 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + + A + + + L + R +P H+A+ D+ +TA Sbjct: 163 IDTLL-IEKWRAVQKGMTLAQDNRLGSARIRYNLPQYTAHNALIDSISTAELLLA 216 >UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFI1_LIBAP Length = 471 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 54/199 (27%), Gaps = 13/199 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNV---DTGESLYFVPHITVEQLAAADPKAMEI 57 M ++ D ET G D P + + V V DP+A+ I Sbjct: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFD---------STIVARQRV 108 G + R+ + E + + + +N FD R Sbjct: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120 Query: 109 TYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 ++ S + V A D L +A G+ VN H A D Sbjct: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180 Query: 169 AAATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 181 VYATLAL-VWLIREKKPKL 198 >UniRef50_C1GVI3 RNA exonuclease n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1GVI3_PARBA Length = 349 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 54/178 (30%), Gaps = 25/178 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D E G+ + +G +++ + + ++ ++G Sbjct: 147 KYVAIDCEMVGVGPNPDRDSALGRVSIVNYNGEQVYDSFVRPKE--TVTDWRTHVSGVSP 204 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + +V L G G D + + Sbjct: 205 KHMAEAR----ELEEVQKDVAKILDGCILIGHAIRNDLKAL---------------LLSH 245 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVVN-RHSAIGDAAATAFCFDM 178 + + D + + + L +A E LG+ + HS+I DA AT F Sbjct: 246 PNRDIRDTSKHPPYRKLAGG-GSPRLKILASELLGLDIQGAAHSSIEDARATMLLFRR 302 >UniRef50_UPI0001AEBC71 putative DNA polymerase, exonuclease activity n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEBC71 Length = 229 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 16/188 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L VDLE T LD T +G ++ G+ V +A ++ I+G Sbjct: 32 PLASVDLELTSLDPVTTQITSIGYVSGSAGKITLSSSGYHVINTSADLGQSPVIHGLTLD 91 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + A A + L+ + N D + +P + Sbjct: 92 ILQQG----EGLADAINSLLPLLKTHVLIFHNARLDLMALDSAFKRCGLPQMEV------ 141 Query: 124 HHRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 D A +LN P+ L +RL +P H+A+ DA AT F Sbjct: 142 --LYLDTLQLALYQLNKQHQVLPSNSATLTVCRQRLDLPAFPEHNALDDALATMQLFYAQ 199 Query: 180 RHTAAAHL 187 + L Sbjct: 200 LNELGITL 207 >UniRef50_D1HJW3 Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HJW3_VITVI Length = 303 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 49/184 (26%), Gaps = 19/184 (10%) Query: 2 AKQLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI-- 57 A +++ DLETT + +E G + V + + + T+ + A+ Sbjct: 12 AAEIVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPGDLSAVALRSGR 71 Query: 58 -NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFS 115 +G + ++ L G +AG N FD + Sbjct: 72 SDGITREVVAGA----PGFEEVADQIFSILNGRVWAGHNIQRFDCVRIKEAFAEIGRAAP 127 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + D K + +A G+ H ++ D Sbjct: 128 VPVG-------MIDSLGVLTEKFGR-RAGNMKMATLATYFGLGQQK-HRSLDDVRMNLEV 178 Query: 176 FDML 179 Sbjct: 179 LKHC 182 >UniRef50_B4RRS4 Putative DNA polymerase, exonuclease activity n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RRS4_ALTMD Length = 226 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +DLE T L +G + V A ++ I+G + Sbjct: 33 FAAIDLELTSLQPSKTQITSLGYVEGKGMRISLASSGYHVINTRADLGQSPVIHGLTQDI 92 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L R ++ A + L+ N N D + R ++ + Sbjct: 93 LERG----EELDEALRHLLPLLKRNILIFHNAKLDLMALDRAFKQNNLQTVEV------- 141 Query: 125 HRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D A +LN P L +RL +P H+A+ DA AT F Sbjct: 142 -IYIDTLQLALYQLNKQHQVLPNNSATLTVCRQRLDLPAFPAHNALDDALATLQLFFAQL 200 Query: 181 HTAA 184 + Sbjct: 201 NELG 204 >UniRef50_A2PLZ2 Gp39 n=2 Tax=Vibrio cholerae RepID=A2PLZ2_VIBCH Length = 185 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 12/184 (6%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I++D ETTGLD D A +EV +++ TG L V L + P+ I+G + Sbjct: 10 IILDTETTGLDSD-ARILEVSIIDAQTGIKL---YSSLVNPLCSISPEVTAIHGITNDMV 65 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP-FSPLTVGRVWH 124 + W +++ +L + N FD + A+ + P + + Sbjct: 66 ----IDMPTFDKVWNDIKGYLSDSVIYVYNLDFDYRMFAQSLRPFGYPVANLVHFFGGGV 121 Query: 125 HRLADLAAYAAGKLNIDPTELE-GLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRH 181 + A + D T L + V + H A+ D T + + Sbjct: 122 CVMRWYANFYGSLCGNDVTPRFQRLTNACYQQDVDTSDLTAHRALADCEMTRRLINAVNA 181 Query: 182 TAAA 185 A Sbjct: 182 RLGA 185 >UniRef50_C6XJL2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJL2_HIRBI Length = 298 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 55/181 (30%), Gaps = 31/181 (17%) Query: 8 VDLETTGLDYDTALPVEVGLLNV---DTGESLYF----VPHITVEQLAAADPKAMEINGY 60 +D ETTGLDY A +E+ L+ G+ + F + + + ++ G Sbjct: 45 IDTETTGLDYREAELIEIALVPFEYSTEGKLVTFGKALDQFQQPK--SPISEEITKLTGI 102 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + E + N AFD R +P Sbjct: 103 TNEMVAGQKIDIPAVEQLIKE------SDLIIAHNAAFDRPFAER--------LTPAFKA 148 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF-DML 179 + W L D+ + E L +A G H A D AT L Sbjct: 149 KPWACSLVDID------WKEEGYESPKLSFLAMEHGF-YYKAHRADIDCWATIKLLAQRL 201 Query: 180 R 180 + Sbjct: 202 K 202 >UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepID=Q4K7B4_PSEF5 Length = 497 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 50/193 (25%), Gaps = 14/193 (7%) Query: 7 VVDLETTGLDYDTALPVEVGLLN--VDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 D ETTG++ P++V + + E + P A I G Sbjct: 28 WYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGITPG 87 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFSPLTVGR 121 L + L E E G N FD + P++ G Sbjct: 88 RLAEQGLGEADFMTRVHEQLARPGTCG-VGYNTLRFDDEMTRYSLYRNFFDPYAREWQGG 146 Query: 122 VWHHRLADLAAYAAGKLNID-------PTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 L D+ A L+ + G+ H A+ D AT Sbjct: 147 NSRWDLIDVVRTAYALRPQGIVWPEEQGQVSLKLERLTAANGIDHGQAHDALSDVRATIA 206 Query: 175 CFDMLRHTAAAHL 187 L L Sbjct: 207 L-ARLVRDKQPRL 218 >UniRef50_Q084B5 Exonuclease, RNase T and DNA polymerase III n=8 Tax=Shewanella RepID=Q084B5_SHEFN Length = 229 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 14/181 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L+ +DLE TGLD + +GL+ + G + ++ + ++ ++G Sbjct: 39 LDAPLMAIDLEMTGLDPIHDQVISIGLVPIINGVIPLDKAQHMMISISGSVGQSATVHGI 98 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPL 117 + + A A +G + D + +Q + +P + Sbjct: 99 ----VDNQLHMALTLAEAIDWFLSKTKGYILVAHHAPLDIQFIQQQLIRCFGQSIPLVFI 154 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + R + + L+A R +PV + H+A+ DA + A Sbjct: 155 DTLAIEKKRC-------LMQQPVLKEGSLRLNASRTRYRLPVYSAHNALIDALSCAELLL 207 Query: 178 M 178 Sbjct: 208 A 208 >UniRef50_A9CIB7 DNA polymerase III, epsilon subunit n=4 Tax=Alphaproteobacteria RepID=A9CIB7_AGRT5 Length = 202 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 17/163 (10%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I +D ET + + VGL ++ G+ + + + P + ++G R + Sbjct: 4 IAIDFET--ANEERGSACSVGLAWIEDGQIVRVEERLIRPRDMRFSPFNIAVHGIRPRDV 61 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + E D G T N AFD +++ Y R+ + Sbjct: 62 EDA----PEFPEVMEEFIDDFHGATMIAHNAAFDFSVMRASFDKY----------RLSYP 107 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 L+ L + + L+ +A L + V H+A D Sbjct: 108 DLSYLCSVKIARHVWPHLVSHKLNVIAHHLQLRFV-HHNAAED 149 >UniRef50_A7SLH3 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SLH3_NEMVE Length = 275 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 21/218 (9%), Positives = 52/218 (23%), Gaps = 41/218 (18%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK---AMEIN 58 V+D+ETTGL V++ + V + + + +++ Sbjct: 24 NATYCVLDVETTGLSKLNDRIVQIACVKVKP-TGDKESWMSYINPCMDREKQLAGGYKVH 82 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSM-PFSP 116 L ++ + + + +L N +D ++ ++ Sbjct: 83 HLSPDMLLKK----PKFSEIVESLWRFLCGAEYLVAYNCLYDWDMLCQEFRRIDRTESGY 138 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP------------------ 158 + + + + + L+ VA+ L + Sbjct: 139 TKLEEEFVKKFTWIDVLRLSISSFPSLSNHKLETVAKHLKIEYMSRTTYTYKSSFNSGEV 198 Query: 159 -------------VVNRHSAIGDAAATAFCFDMLRHTA 183 H A+ D T Sbjct: 199 EAVSVTEQSCDPWQGGAHDAMCDVLTTNSVLQEAMGKL 236 >UniRef50_Q5QUI3 3'-5' exonuclease n=1 Tax=Idiomarina loihiensis RepID=Q5QUI3_IDILO Length = 215 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 17/184 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAAD-PKAMEIN 58 + + + +D+E+TGLD + + +++ L + + ++ I+ Sbjct: 23 QSLRYVALDIESTGLDPKKHQILSIAWMSIHPPVMHLGNAQYHVFAHGQELELGQSPTIH 82 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + +Q A + L + D + Y +PF PL Sbjct: 83 GLTRQDFLHSSEPKQTFA----MLSRALNDAVLVCHHKGMDWRFLKHIEAQYGIPFKPLA 138 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEG----LDAVAERLGVPVVNRHSAIGDAAATAF 174 + LA + G L A +R +P + H A+ D A A Sbjct: 139 I-------FDTLAFEKHKLERNPHQPIYGGQLALSACRKRYNLPDYHAHHALTDTVACAE 191 Query: 175 CFDM 178 F Sbjct: 192 LFLA 195 >UniRef50_C8PWE0 Exonuclease, Ycg4D n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWE0_9GAMM Length = 217 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 14/176 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + D ET G +E+ + D + + + + P A +++G Y L Sbjct: 50 LFFDTETIGGG-REDQIIEIAFCDSDRHVIIDTLIYT----DRTSSPGAFKVHGIYPHEL 104 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + L+G T N FD ++ + + + + + + Sbjct: 105 ----IGKPTFIDIQPAIVQLLKGRTLYAYNANFDIRMMRQS--GHKLRLQQVGIKCLCKQ 158 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + Y+ L G+ N H A DA A + + Sbjct: 159 FADFIGQYSPY---FKANRYFSLSKACLHFGIEHSNAHRARPDALACVTVWQGMVK 211 >UniRef50_UPI0001B4C718 DNA polymerase III subunit epsilon n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C718 Length = 241 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 46/160 (28%), Gaps = 4/160 (2%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L D ETTG+D + V L+ SL V V A EI+G + Sbjct: 8 PLAAFDTETTGIDVEHDRIVSAALVVQRGAGSLPEVRRWLVSPGIPVPQAATEIHGLTDT 67 Query: 64 GLYREAL-TEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + RG N FD T++ R+ + + Sbjct: 68 HLQQHGRWPAPVMDEVARALAEQTARGTPVVVMNAPFDLTLLDRELKRHRNATLATYLSL 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 L L+ L + GV + Sbjct: 128 RSLSVLD--PRVLDKHLDRYRKGRRTLTDLCAHYGVELTG 165 >UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSN1_AZOVD Length = 476 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 53/199 (26%), Gaps = 14/199 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF---VPHITVEQLAAADPKAMEI 57 M + D ETTG++ P++V + D + + P A + Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLV 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSM-PFS 115 G R L L E + T AG N FD I P++ Sbjct: 61 TGITPRLLAERGLCEAEFVTRLHAELALPGTCT-AGYNSLRFDDEISRHALYRNFFDPYA 119 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNID-------PTELEGLDAVAERLGVPVVNRHSAIGD 168 L DL A L+ + G+ H A+ D Sbjct: 120 REWQAGNSRWDLIDLLRTAYALRPEGIHWPQEEGRVSLRLERLTAANGIEHGQAHDALAD 179 Query: 169 AAATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 180 VRATIAL-ARLLRERQPKL 197 >UniRef50_Q0CHU1 RNA exonuclease 4 n=5 Tax=Eukaryota RepID=Q0CHU1_ASPTN Length = 510 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 53/178 (29%), Gaps = 25/178 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D E G+ + + +++ + + +++ ++G Sbjct: 118 KYVAMDCEMVGVGPNPDHDSALARVSIVNFNGEQVYDSFVRPKEM--VTDWRTHVSGILP 175 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R + EV + + G G D + + Sbjct: 176 RHMAEAR----TLEQVQKEVAEIIDGRILVGHALRNDLDAL---------------LLSH 216 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVV-NRHSAIGDAAATAFCFDM 178 + D + Y + L +A E LG+ + HS++ DA AT + Sbjct: 217 PKRDIRDTSKYPPYRKVAGG-GSPRLKVLASEFLGLDIQGGAHSSVEDAKATMLLYRR 273 >UniRef50_B9FK06 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9FK06_ORYSJ Length = 252 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 44/180 (24%), Gaps = 16/180 (8%) Query: 3 KQLIVVDLETT--GLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++ D+ETT D +E G + V + + TV + + Sbjct: 4 PEMVFFDVETTAASADEGQRSVLEFGAIVVCPRRLVEVDSYHTVIRPGDMSAVSKRF--- 60 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + + + L G +AG N FD + Sbjct: 61 -AAMVDVDVASAPSFDQVAERIFGVLDGRVWAGHNIQRFDCHRIREAFAAIGRAAPEPVA 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + +A G+ H ++ DA Sbjct: 120 IVDSLNV--------LAHDFGRRAGDLKMATLASYFGIG-KQSHRSLDDARMNLEVLKRC 170 >UniRef50_C6JNE1 Exonuclease RNase T and DNA polymerase III n=2 Tax=Fusobacterium RepID=C6JNE1_FUSVA Length = 188 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 62/187 (33%), Gaps = 16/187 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ +D ET G+ +AL G++ + + F ++ + +A++I G Sbjct: 2 KILFIDTETGGITEKSALIQLSGIVQIGKEVAEEFNFYVKPFPGSEVTDEALKIQGRTRE 61 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN---------TFA-GSNPAFDSTIVARQRVTYSMP 113 + + V + + L + G N FD ++ + Sbjct: 62 EIEK----YDSEEVVFRKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINKFLRRNGEK 117 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + + L +AA K I + L+ G+ + H ++ D AT Sbjct: 118 YLFSYIQATTLDPLQWIAALQLLKK-IPVLKDNKLETWCNHFGIELK-AHDSLEDIKATK 175 Query: 174 FCFDMLR 180 + Sbjct: 176 ALTKKMM 182 >UniRef50_D0B846 Exonuclease n=51 Tax=Alphaproteobacteria RepID=D0B846_BRUME Length = 332 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 45/177 (25%), Gaps = 26/177 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHI--TVEQLAAADPKAMEINGY 60 +VVD ETTGL+ +E+G + G + + I G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + E + N FD + S+ F+ Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPFLE----RLSIAFANKPWA 183 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + E L + + G N H A D A Sbjct: 184 ----------CSVKEIDWTARGFEGTKLGYLIGQSGY-FHNGHRAEDDCQALLAVLK 229 >UniRef50_B0UJH8 Exonuclease RNase T and DNA polymerase III n=2 Tax=Methylobacterium RepID=B0UJH8_METS4 Length = 222 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 59/184 (32%), Gaps = 21/184 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVD-----TGESLYFVPHITVEQLAAADPKAMEIN 58 +L+ VD+ETTGL + V G + +D G + H+ + + P+A ++ Sbjct: 21 RLLAVDVETTGLGAE-DRVVSFGAVLLDTATLLGGSPVLACHHLIFDPGRPSHPRAEAVH 79 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 GY + L + + + N AFD +AR+ P Sbjct: 80 GYDDWLLRHQDPARGHLDAVAALLA---GADLVVAHNAAFDLGFLAREFRAAGRPDPARP 136 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFD 177 LDAV R+ + H A+ DA + Sbjct: 137 TYCTM-----------EAYRRRGEPGSSALDAVCRRVKLARAGARHGALEDAWLALRVYL 185 Query: 178 MLRH 181 L+ Sbjct: 186 WLQG 189 >UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus capsulatus RepID=Q605A2_METCA Length = 478 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 51/199 (25%), Gaps = 15/199 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNV---DTGESLYFVPHITVEQLAAADPKAMEIN 58 A DLET G D + L V + P A + Sbjct: 4 APSFYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVT 63 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVT-YSMPFSP 116 G + + E + G N FD ++ P++ Sbjct: 64 GITPQYAAELGVPESAFIATIHRIFMRPGTCVL-GYNTLRFDDEMLRHAFYRNLYDPYAR 122 Query: 117 LTVGRVWHHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSAIGD 168 G + DLA + + L+ +A G+ + H A+ D Sbjct: 123 EWKGGNSRWDVIDLARLTQALRPDGIEWPRDSLGSPVFKLERLAAANGIRHESAHDALSD 182 Query: 169 AAATAFCFDMLRHTAAAHL 187 AT F L L Sbjct: 183 VRATVA-FARLIAERQPRL 200 >UniRef50_Q4WHF8 RNA exonuclease 4 n=47 Tax=Fungi/Metazoa group RepID=REXO4_ASPFU Length = 310 Score = 99 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 55/178 (30%), Gaps = 25/178 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D E G+ + + +++ + ++ +++ ++G Sbjct: 115 KYVAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEM--ITDWRTHVSGISP 172 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + +V + L G G + D + P Sbjct: 173 KHMAEAR----SLEQVQKDVAEILDGRILVGHAVSNDLDAL-----LLGHP--------- 214 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPV-VNRHSAIGDAAATAFCFDM 178 + D + + + L +A E LG+ + HS++ DA AT + Sbjct: 215 -KRDIRDTSKHPPYRKIAGG-GSPRLKILASEFLGLNIQDGAHSSVEDAKATMLLYRR 270 >UniRef50_C2UN60 Exonuclease n=4 Tax=Bacillus cereus group RepID=C2UN60_BACCE Length = 288 Score = 99 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 24/176 (13%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGL +E+ ++++ G+ L V+ +A I+G Sbjct: 131 FVILDTETTGLT-LRDQIIEISVIDL-AGKILLNS---LVKPTIIIPAEATSIHGITNEM 185 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 ++ Q + E+ + G T N FD ++ + ++ F Sbjct: 186 IHGA----QSWTTIYQELLEVTVGKTILIYNAEFDLGMIENTCIANNVEFKDFKS----- 236 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +D + L + L + H A D A L+ Sbjct: 237 -----TCVMKMYADYVDSKKWISLSDATK-LTIK----HRAAADCFAVLELLQQLK 282 >UniRef50_B2WGV1 RNA exonuclease 4 n=2 Tax=Pleosporineae RepID=B2WGV1_PYRTR Length = 358 Score = 99 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 25/180 (13%) Query: 4 QLIVVDLETTGLDYDTAL---PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +D E G+ + V L+N + + ++ V + ++G Sbjct: 150 KYVALDCEMVGIGPEPNRDSALARVSLVNFHGHQI--YDSYVQVPRQVQVTDYRTAVSGI 207 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R L ++ + +++ L G G D ++ + Sbjct: 208 EPRHLRKDV--ARPFDEVRNDIKILLTGRILVGHAVKNDLDVL---------------IL 250 Query: 121 RVWHHRLADLAAYAAGK-LNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFD 177 + + D + ++ + L P GL +AE+ LGV + HS++ DA AT F Sbjct: 251 KHDKRFIRDTSKFSKFRALATIPGRTPGLKLLAEKLLGVEIQVGAHSSVEDARATMALFR 310 >UniRef50_Q12PE3 Ribonuclease T n=157 Tax=Gammaproteobacteria RepID=RNT_SHEDO Length = 226 Score = 99 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 24/194 (12%) Query: 6 IVVDLETTGLDYDTALPVEVG--LLNVDTGESL----YFVPHITVEQLAAADPKAMEING 59 +V+D+ET G + +T +E+ LL ++ L HI + A +P+A+ NG Sbjct: 20 VVIDVETAGFNANTDALLEIAVTLLKMNDDGILVLDKTVHFHIEPFEGANLEPEALAFNG 79 Query: 60 YYERG-LYREALTEQQTAVAWGEV-----QDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 L ++ + V + N AFD + V + + Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKTVKKGQKASDCHRSIIVAHNAAFDLSFVNKAIERNDLK 139 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAA 171 SP + D A A + L + G+ N HSA+ D Sbjct: 140 RSPFHPFASF-----DTATLAGLSIGHTV-----LAKACKMAGIDFDNKEAHSALYDTER 189 Query: 172 TAFCFDMLRHTAAA 185 TA F + + A Sbjct: 190 TAELFCHIVNRWKA 203 >UniRef50_B0UVN4 Exonuclease RNase T and DNA polymerase III n=2 Tax=Histophilus somni RepID=B0UVN4_HAES2 Length = 236 Score = 99 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 51/180 (28%), Gaps = 15/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVE-QLAAADPKAMEINGYYER 63 +V+D ETTGL+ + V + +D + + IN + Sbjct: 52 YLVIDFETTGLNSMMDNILSVATVPIDNLTLDISKAWHQFVAEQQEIKEDTVIINHILPQ 111 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYSMPFSPLTVGRV 122 L + ++ + ++G + + Y++ PL Sbjct: 112 MLNGA----ETLDDTMNKLFELMQGRILIAHGSTIEKRFILHYLNVRYNLSQFPLF---- 163 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D L D L + + +P H+A+ DA + F Sbjct: 164 ----WLDTLKIERS-LCQDNENNYQLSHIRNKYNLPEYIGHNALIDAISAGELFLAQLEK 218 >UniRef50_C0VTT8 DNA polymerase III epsilon subunit (Exonuclease) n=3 Tax=Actinomycetales RepID=C0VTT8_9CORY Length = 427 Score = 99 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 25/185 (13%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + VD ET + + ++ ++ V+ G+ + + + + +G Sbjct: 252 PKFVAVDFET--ANRSSRSACQIAMVKVEYGQIVDRFSTLLKPPPGHDEFEFTYFHGISA 309 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R + ++ ++ N +FD + Y P Sbjct: 310 RDVADA----PSWKFVEPYIRAFVDRLPVYAHNASFDRGVWVSMDSYYGTRTLPEEFY-- 363 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAER----LGVPVVNRHSAIGDAAATAFCF-- 176 +Y K I E L V + + H A DA A A Sbjct: 364 --------CSYRTAKRLIPGLENYKLPTVTKAIAPWFRLD---HHRADSDAEACALIVIG 412 Query: 177 DMLRH 181 + Sbjct: 413 LQMLE 417 >UniRef50_C8NL35 DNA polymerase III, epsilon subunit n=20 Tax=Corynebacterium RepID=C8NL35_COREF Length = 252 Score = 99 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 50/183 (27%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++ DLETT + A V ++ + + + + A ++G Sbjct: 37 MLSFDLETTAANPFEARIVTSAMVTITNAGATPLE--LLADPGVEIPEGATAVHGITTEY 94 Query: 65 LYREALTEQQ-TAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 ++ A +Q+ N N +D T++ R +++ V Sbjct: 95 AREHGQPHEEVLAETIRRIQEGWGNNQALIVYNAPYDLTVLRRLSGDFTIDGLVYDPYTV 154 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L + V + N H A DA A A Sbjct: 155 DR------------IKDPYRKGKRTLADLCAHYEVQLGNAHEATSDALAAARIAWKQARI 202 Query: 183 AAA 185 Sbjct: 203 WPE 205 >UniRef50_C1E3S8 Exonuclease (Fragment) n=1 Tax=Micromonas sp. RCC299 RepID=C1E3S8_9CHLO Length = 279 Score = 99 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 53/179 (29%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +I +D E G+ D + + V+ ++ + + ++G + Sbjct: 32 DIIAMDCEMVGVGEDGRRSILARVSVVNEDGNVVLDTFVAPTEP--VTDYRTRVSGVRPQ 89 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ D L+G T G D ++ P ++ Sbjct: 90 DLRGA----PPFKEIQRKMADILKGRTLVGHALKNDLRVL-----LLDHPRRQTRDTALY 140 Query: 124 HHRLADLAAYAAGKLNI--DPTELEGLDAVA-ERLGVPVV-NRHSAIGDAAATAFCFDM 178 L A + L + + LG+ + HS++ DA A + Sbjct: 141 RPLTRPLRANERAQDTGIARGRGSRSLKELCAQHLGLEIQGGEHSSVDDARAALLLYQK 199 >UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KPJ8_9GAMM Length = 482 Score = 99 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 55/200 (27%), Gaps = 17/200 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEIN 58 ++ L D ET G+D P + L D + P + + P A I Sbjct: 4 SETLYWHDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDACLIT 63 Query: 59 GYYERGLYREALTEQQT-AVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVT-YSMPFS 115 G + + E E RG G N FD T+ P++ Sbjct: 64 GITPQAALAAGVPEADFIKAILHEFMQ--RGTCAVGYNSLRFDDTVTRATLYRNLRDPYA 121 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNI--------DPTELEGLDAVAERLGVPVVNRHSAIG 167 L D+ A D L+ + E G+ H A+ Sbjct: 122 REYGDGRSRWDLIDIVRTAYALRPEGLIWPERDDGLPSFRLEDLCEANGLAQGRAHDALV 181 Query: 168 DAAATAFCFDMLRHTAAAHL 187 D AT L L Sbjct: 182 DVQATIAL-ARLLKERQPRL 200 >UniRef50_Q2S3Z9 Exonuclease, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3Z9_SALRD Length = 249 Score = 99.6 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 51/185 (27%), Gaps = 20/185 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEI 57 + + L+ DLE TG D A +++G+ G +L + V+ ++ Sbjct: 4 LERPLVFFDLEATGTDPQAARIIQIGMQRFVPSGDGAALDETIDVLVDPQEEIPAAVTDL 63 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSP 116 G + L AG N A+D ++ + + Sbjct: 64 TGLSP----DAVRQAPPLGAHLDRIAPLLADADLAGYNALAYDIPLLQAEFERHGRTLPG 119 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFC 175 V L A+ ER G + + H A+ D A Sbjct: 120 PDDRVVLDP-----------YRLEQVLRPRTLSALYERYTGDALDDAHDALSDVEAAGRV 168 Query: 176 FDMLR 180 Sbjct: 169 LQRQL 173 >UniRef50_Q1J224 Exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J224_DEIGD Length = 188 Score = 99.6 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 64/185 (34%), Gaps = 8/185 (4%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEING 59 + + +I VD ET G D + VGL+ + + H+ V + +AM +NG Sbjct: 10 LTQPIIFVDTETGGRDPARHPLLTVGLVTLTPQGEVTRPLHLRVRHEHYEVEEEAMAVNG 69 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + A ++ A A + G N A+D + F V Sbjct: 70 IDLATHHATAQAPEEVAEAVRAYARAVGRVMLGGHNLAYDLGFLRWLLPDLKSIFRRGRV 129 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + A K+ LD +A+ G+ H A+ DA TA+ + L Sbjct: 130 DTKLTAQFLLHAGILPRKVGTP------LDQLAKYFGL-AYQAHDALEDARVTAWVYAEL 182 Query: 180 RHTAA 184 A Sbjct: 183 LRLTA 187 >UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=EX1_BUCAP Length = 482 Score = 99.6 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 17/197 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEINGYY 61 + D ET G+ P + + D ++ + DP ++ I G Sbjct: 12 FLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSSILITGIT 71 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 + E + + +V G N FD I + Sbjct: 72 PEYTEKHGFNEYKFSKKIHDVL-LKPNTCIIGYNNINFDDEITRNIFYRNFLD-PYEWSW 129 Query: 121 RVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGDAA 170 + + R L A + L + ++ + N H A D Sbjct: 130 KNNNSRWDLLNVVRACYALRPSGIQWPKNEFGLPVFKLSDLTQKNNISHYNAHDATSDVY 189 Query: 171 ATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 190 ATIEL-AKLIKRKQPKL 205 >UniRef50_A0Y7J9 Putative exonuclease n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y7J9_9GAMM Length = 255 Score = 99.6 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 15/177 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTGL +TA +E+ +L+ + L V+ A E++G R L Sbjct: 43 VILDTETTGLS-ETAQLIEICILDFEGNILLNE----RVKPSVKVSKGAREVHGIKARDL 97 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + + + G N FD I+ + +++ R W+ Sbjct: 98 K----SCRSWPDVYRDYVEVTAGKNIVAYNAKFDRRIITQTCRAFNLTMKK----RKWYC 149 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDMLRH 181 + + G+ + L A V P + HSA GD T Sbjct: 150 LMLAFSEL-VGRTRYGDYKWHKLSTAAWVFDVPPNDDAHSAYGDCETTLAVAKEFLQ 205 >UniRef50_B9ZRI9 Ribonuclease T n=3 Tax=Gammaproteobacteria RepID=B9ZRI9_9GAMM Length = 228 Score = 99.6 bits (247), Expect = 5e-20, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 69/201 (34%), Gaps = 25/201 (12%) Query: 1 MAKQL-----IVVDLETTGLDYDTALPVEVGLLNVDTGESL------YFVPHITVEQLAA 49 MA + +VVD+ET G D ++V + + E+ H+ + + Sbjct: 14 MANRFRGFLPVVVDVETGGFDCRRHALLQVAAVFLRRDENDHLVRDRTVSLHVRPYEGSE 73 Query: 50 ADPKAMEINGYYERGLYREALTEQQ-----TAVAWGEV-QDWLRGNTFAGSNPAFDSTIV 103 DPK++E+NG R A E Q + EV + + G N FD V Sbjct: 74 MDPKSLEVNGIDPYHPLRAAYPEDQAMGRLFSEVRREVKINHCKRAILVGHNAHFDLGFV 133 Query: 104 ARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 + +P H + L + L T L A LG H Sbjct: 134 HTAAERCGIKRNPF-------HPFSSLDTVSLAALAFGQTVLARAADAAG-LGWDAEAAH 185 Query: 164 SAIGDAAATAFCFDMLRHTAA 184 SA DA TA F + + Sbjct: 186 SAAFDAEKTADIFCQIANRWQ 206 >UniRef50_D1H2G0 Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) n=10 Tax=Magnoliophyta RepID=D1H2G0_VITVI Length = 447 Score = 99.6 bits (247), Expect = 5e-20, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 47/185 (25%), Gaps = 25/185 (13%) Query: 4 QLIVVDLETT-----GLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAM 55 ++ D+ETT G +E G + V + + + T+ + ++ Sbjct: 9 EIAFFDVETTVPTRVG---QGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSLSV 65 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPF 114 NG ++ V D L G +AG N FD + P Sbjct: 66 RCNGIT----RDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRPA 121 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + +A G+ H ++ D Sbjct: 122 PEPKGSIDSLAL--------LTQRFGRRAGDMKMATLATYFGLG-QQTHRSLDDVRMNLE 172 Query: 175 CFDML 179 Sbjct: 173 VLKYC 177 >UniRef50_A4TY99 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases n=2 Tax=Proteobacteria RepID=A4TY99_9PROT Length = 173 Score = 99.6 bits (247), Expect = 5e-20, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 46/179 (25%), Gaps = 21/179 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D ET D + L V G + + A I+G Sbjct: 2 DFIALDFET--ADNGRDSACSLALAVVKNGTV--AETWHRLIRPPRASQMFTHIHGITWD 57 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + W E++D + A N FD ++A + Sbjct: 58 MVKDQ----PDFGHFWPEIRDLIDAAPFLAAHNAPFDKGVLAECCRAHGHGAPLTPFVCT 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D L V L P+ N H A+ DA A A Sbjct: 114 VR-VARDTWNLRPT----------KLPDVCRFLAQPL-NHHDALSDAVACAEIMLAALR 160 >UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacteria RepID=A5CVQ8_VESOH Length = 473 Score = 99.2 bits (246), Expect = 6e-20, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 51/200 (25%), Gaps = 19/200 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV--PHITVEQLAAADPKAMEINGY 60 K D ET G+ + + D ++ + P+ I G Sbjct: 2 KTFYWYDYETFGISPKIDRISQFAGIRTDENFNILDEQMFYCKPTNDCLLSPETCLITGI 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLR--GNTFAGSN-PAFDSTIVARQRVTYSM-PFSP 116 + ++ + E + ++ L G N FD + P++ Sbjct: 62 SPQLCEQKGMIEHKF---IKKIHAQLSTPDTCVIGYNSIRFDDEFTRYALYRNFIDPYTW 118 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTEL---------EGLDAVAERLGVPVVNRHSAIG 167 + D+ + LD ++ + H+A+ Sbjct: 119 HWKNGNTRWDILDVVRLCYALKKDTSLKWVYDEQNKVIFKLDQLSLANNIEHTYAHNALA 178 Query: 168 DAAATAFCFDMLRHTAAAHL 187 D AT + L Sbjct: 179 DVYATIAI-AKIIKKTQPQL 197 >UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=B3PLL7_CELJU Length = 497 Score = 99.2 bits (246), Expect = 6e-20, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 50/197 (25%), Gaps = 15/197 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEINGY 60 L D ET G PV+ + D ++ + P+A I G Sbjct: 8 TLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEACLITGI 67 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFSPLT 118 + + ++E A G N FD + P+ Sbjct: 68 TPQEAEAKGVSEADFIAAIHRELARPGTCG-VGYNSIRFDDEVTRYTLYRNFYDPYEREW 126 Query: 119 VGRVWHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 L D+ D T L+ + E + H A+ D Sbjct: 127 RNGNSRWDLIDVLRMTRALRPEGIHWPDYEDGTPCFKLERLTEVNRISHEAAHDALSDVH 186 Query: 171 ATAFCFDMLRHTAAAHL 187 AT L + L Sbjct: 187 ATIA-MARLLKSRQPKL 202 >UniRef50_A4B9Q7 Putative DNA polymerase, exonuclease activity n=1 Tax=Reinekea blandensis MED297 RepID=A4B9Q7_9GAMM Length = 192 Score = 99.2 bits (246), Expect = 6e-20, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 18/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAA---DPKAMEING 59 +++V+DLE TGL+ + G + ++ G H + A + I+ Sbjct: 16 RVLVLDLEMTGLNAQEDSIISAGWVVIEQGRIELSLAGHQYFQPTAMMASDVSASAHIHM 75 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL-- 117 + L ++ + L + + + D + + + Sbjct: 76 ITDHLLEQQGQPLGHW---LQRLNGDLLADRWVFHHAPIDMAFLKMFSQRLDIVLPSVTI 132 Query: 118 -TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + R +DL + +L L A R +P +H A+ DA ATA + Sbjct: 133 EDTVLLEQKRFSDLTLESQQQL--------SLTACRARHRLPAYRQHHALSDALATAELY 184 Query: 177 DMLR 180 L Sbjct: 185 LALM 188 >UniRef50_B7GKP6 3'-5' exonuclease related protein n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GKP6_ANOFW Length = 240 Score = 99.2 bits (246), Expect = 7e-20, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 39/176 (22%), Gaps = 17/176 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 I++D ETTG + L GE L + + G Sbjct: 57 TFILLDTETTGFSPQRGDEIFSLAALKTKNGEPLDLYCS-NFRPKRRIPEHVVTLTGITN 115 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + +L + G + D + Sbjct: 116 DDVAYA----PLLEEEIHHILSFLNHSILLGYHIQHDVAFLNEFLSRNYRTVLQQ----- 166 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 I LD + ++RH+A GD + + Sbjct: 167 ------TTIEMRKIMECIYHESFPTLDDALSFYHLTPIDRHTAKGDVMSLFEMWKR 216 >UniRef50_D0ZEQ2 Orf81 bacteriophage 186 n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEQ2_EDWTE Length = 199 Score = 99.2 bits (246), Expect = 7e-20, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 11/176 (6%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 ++D ETTG+ + A V +++ G L H ++ + I+G + Sbjct: 32 ILDTETTGVK-ENAEIVSAAIID-QDGTVL---FHSLIKPVNPITEITTAIHGITNEMVA 86 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + A E+ L N FD ++A+ + +P + Sbjct: 87 EK----PTWAEVHDEIARILNTAPLVVYNAQFDMRMMAQSAAKHGLPPIVVNTEVNCAME 142 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLRH 181 A Y + L + V N HSA+GD T + Sbjct: 143 -AYAHFYGQWNEEHQSYRWQSLSMAMFQQDVDDDNIPHSALGDVNRTLALMRSMVK 197 >UniRef50_Q211V1 Exonuclease n=2 Tax=Rhizobiales RepID=Q211V1_RHOPB Length = 314 Score = 98.8 bits (245), Expect = 7e-20, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 17/168 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++ +D ET + + P +GL ++ G+ + + + +++G Sbjct: 3 ILAIDFET--ANEKRSSPCALGLAWIERGQIVRREYRLIKPKEMRFGVFEAKVHGLSPSE 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + Q+ E ++ N FD ++ Y + + Sbjct: 61 VKDA----QEFPEVISEFLSDIQSGLLLAHNAQFDVDVLCATLALYGIAIPRFSF----- 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 L + + L A+ E+LG+ H A DA A Sbjct: 112 -----LCSQRVASRVWSDEKSLKLSALGEKLGISF-RHHQADEDAFAC 153 >UniRef50_A1WUZ8 Ribonuclease T n=10 Tax=Gammaproteobacteria RepID=A1WUZ8_HALHL Length = 226 Score = 98.8 bits (245), Expect = 8e-20, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 69/196 (35%), Gaps = 25/196 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-------VPHITVEQLAAADPKAMEIN 58 +VVD+ET GL +T +++ + + E H+ + A DPKA+E+N Sbjct: 34 VVVDVETGGLQAETDALLQIAAVILRAEEGTGRLYPAETHTCHVQPFEGARIDPKALELN 93 Query: 59 GYYERGLYREALTEQQ-----TAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSM 112 G R A+ E+ E+++ G N FD + Sbjct: 94 GIDPEHPLRMAVPERDALGKMFNPVRQELRNTGCNRAVLVGHNAFFDLAFLNAAVTRTGF 153 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAA 170 +P + A L A G+ L + G+ HSAI DA Sbjct: 154 KRNPFHPFSSF--DTATLGGLAYGQTV--------LAKAVKAAGIEWDAKEAHSAIYDAE 203 Query: 171 ATAFCFDMLRHTAAAH 186 TA F + + AH Sbjct: 204 KTAELFCAIVNCWDAH 219 >UniRef50_B9KV46 Exonuclease n=1 Tax=Rhodobacter sphaeroides KD131 RepID=B9KV46_RHOSK Length = 293 Score = 98.8 bits (245), Expect = 8e-20, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 44/175 (25%), Gaps = 16/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I +D+ET D + + + + F V DP + ++G Sbjct: 11 RFIALDVETACSDAGSICQIGLACV-FPDNRIHTFST--LVNPGTRFDPFNVRLHGIGPD 67 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + L + + FD + + Sbjct: 68 HVSGALR----FDELLDHLFPLLSRHHLVQHS-NFDKQALNAACRSCGREPPDF------ 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + GL + LG+ N H A DA A A Sbjct: 117 -RWADSVTIARRAWPELLRNGGHGLGNLKRVLGLDF-NHHDAGEDARAAALVVLH 169 >UniRef50_B8DPI8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DPI8_DESVM Length = 267 Score = 98.8 bits (245), Expect = 9e-20, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 65/218 (29%), Gaps = 39/218 (17%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYER 63 + +D E TGL+ + VG + + + P+ + ++G Sbjct: 25 FVSLDCEMTGLNPARDDLLAVGAVVLRGMRLDLSATFRGLLRPACPVRPEGVPVHGILP- 83 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFA--------------GSNPAFDSTIVARQRVT 109 EA + A + WL G G D +A R Sbjct: 84 ---GEAAHGDEAAAQLARLDAWLAGCAAVPGAGNGAEAPVVLLGWCLGLDEAFLAAGRKR 140 Query: 110 YSMPF---SPLTVGRVWHHRLADLAAYAAGKLNIDP-----------------TELEGLD 149 +P V ++ H A A +G+ + P + L Sbjct: 141 AGLPARTHPRCDVLDLFRHVRARGVAAPSGQGAMPPSGASPLPSTHAALADIPLKDADLY 200 Query: 150 AVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAAAHL 187 AVA LGV V H A+GDA A F L L Sbjct: 201 AVARALGVDVHGAHDALGDACMCAQVFQRLVPLLERGL 238 >UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z9I3_9GAMM Length = 483 Score = 98.8 bits (245), Expect = 9e-20, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 55/200 (27%), Gaps = 17/200 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEIN 58 ++ D ET+G + P++ + D ++ + P A+ + Sbjct: 4 SESFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAIRVT 63 Query: 59 GYYERGLYREALTEQQT-AVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSP 116 G E E A E + G G N FD I P Sbjct: 64 GISPYKALAEGANEGAFMAKIQREFM--VPGTCALGYNSVRFDDEITRFALYRNFFPPYA 121 Query: 117 LTVGRV-WHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIG 167 G+ L D+A D L+ + G+ N H A+ Sbjct: 122 REFGQNRSRWDLIDVARAIYALRPDGIVWPIREDGLPSFRLEDLTAANGIDHGNAHDALA 181 Query: 168 DAAATAFCFDMLRHTAAAHL 187 D AT L A L Sbjct: 182 DVLATIAL-AKLLSKAQPTL 200 >UniRef50_C9PFC2 DNA polymerase III epsilon subunit n=2 Tax=Vibrio RepID=C9PFC2_VIBFU Length = 238 Score = 98.4 bits (244), Expect = 9e-20, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 53/179 (29%), Gaps = 9/179 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 L+ D ET+G+D + +G + + + + I V + IN Sbjct: 52 DLLAFDFETSGVDAGHDQILSLGWVGMTLDQIDVAASEEIFVRHPEFVTADSAVINHITP 111 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A + L G + VA+ F+ V Sbjct: 112 QVLAHGV----TLDEAMDRLFGQLAGKIALVHGACIERAFVAQYMRE---RFAIEHFPCV 164 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 W L T L+ V R +P N HSA DA ATA F Sbjct: 165 WVDTLQIEKQMTYAGKTECGT-SFQLNDVRTRYALPQYNAHSAAIDALATAELFTAQMK 222 >UniRef50_A4AJM3 DNA polymerase III subunit epsilon n=4 Tax=Actinobacteria (class) RepID=A4AJM3_9ACTN Length = 232 Score = 98.4 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 55/172 (31%), Gaps = 15/172 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + L DLETTG+D +T+ V + VD + + A I+G Sbjct: 4 SGTLATFDLETTGVDVETSRIVSACIALVDASGVVISRWDWLADPGVEIPEGAAAIHGIS 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNT-----FAGSNPAFDSTIVARQRVTYSMPFSP 116 E A+ E+ L+ N +D +++ R+ YS+ Sbjct: 64 TERARAEGRDA---AIVVAEIVQTLKVTCALGIPLVVYNAPYDLSLLDRECRRYSIDGLR 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + + ++ L+ + GV + + H A D Sbjct: 121 EPYIVIDPLVID-------KAVDRYRRGKRTLEVTSGLYGVALDDAHDAGSD 165 >UniRef50_B6U6C6 Exonuclease n=1 Tax=Zea mays RepID=B6U6C6_MAIZE Length = 302 Score = 98.4 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 46/183 (25%), Gaps = 16/183 (8%) Query: 1 MAKQLIVVDLETTG---LDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M +++ D+ETT +E G + V + + + T+ + + Sbjct: 3 MRDEIVFFDVETTAPSAAGPGRWWLLEFGAILVCPRKLVEVGSYDTLIRPGDLSAVSRRF 62 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSP 116 + + ++ D L G +AG N FD + P Sbjct: 63 ---TDDVEAAIMASAPPFKDVADKIFDILDGRVWAGHNIQRFDCPRIREAFADIGRPAPE 119 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + +A G+ H + DA Sbjct: 120 PVGVIDSLNV--------LAAHFGRRAGDLKMATLATYFGIGKQK-HRGLDDARMNLEVL 170 Query: 177 DML 179 Sbjct: 171 KHC 173 >UniRef50_A7B402 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B402_RUMGN Length = 300 Score = 98.0 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 17/177 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IV DLETTG++ P+ + ++++ + F + E + P A I+G + Sbjct: 135 IVYDLETTGVNPWKDEPLSMCIMDLQG--KVIFEHYFRPEHTKSW-PDAAAIHGITPEKV 191 Query: 66 YREALTEQQT-AVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRVW 123 E + ++ D + N FD + + + V R + Sbjct: 192 ANE--SPMSFYRDQIQKIFD--ASDILITYNGINFDDSFLEAAGIKLP-EVMQFDVMREY 246 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + D Y L A G H A D AT +C+ + Sbjct: 247 AWLIHDWDEY------HQGWRWWRLIDCAAYYGYEFS-AHDAAEDVKATLYCYKKMV 296 >UniRef50_Q9APT6 DNA polymerase III n=1 Tax=Pseudomonas aeruginosa RepID=Q9APT6_PSEAE Length = 204 Score = 98.0 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 28/185 (15%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV--PHITVEQLAAADPKAMEING 59 ++ +++VD+E G + VE+ + + + ++ +A ++G Sbjct: 10 SEPIVIVDVE--GNGHTPPDLVELAIASFP---VVEGEEPSSWLIKPPNPITWQAKRVHG 64 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + G+V+ L+G F N + D ++ R Sbjct: 65 IGNSSVKG----SPVWEELRGDVEQQLQGKWFVAHNASIDYEVMKRHL------------ 108 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAFCF 176 + + + E L A+ G+ H A DA TA Sbjct: 109 --PDWAPVGVIDTLKLARHVYPDAESHSLSALLAMTGLDSEVSGELHRAGEDARVTALLL 166 Query: 177 DMLRH 181 L Sbjct: 167 SRLLK 171 >UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochmannia RepID=Q7VQX2_BLOFL Length = 501 Score = 97.6 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 49/198 (24%), Gaps = 15/198 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTG---ESLYFVPHITVEQLAAADPKAMEING 59 ++ D ET GL+ P + + V+ V + +P+++ I G Sbjct: 8 PTFLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNPESVLITG 67 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L E Q A + + +N +FD Sbjct: 68 ITPYDTLSNGLLEPQFAYQISQKFNVPNTCILGYNNISFDDEFSRNIFYRNFYD-PYKWS 126 Query: 120 GRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGDA 169 + R L A L + + +N H A D Sbjct: 127 YHHGNSRWDLLPVLRAFYSLYPTGIQWPINSKKKVSFRLTDLTLANSIQHLNAHDATSDI 186 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 187 FATLEIM-KLIKYTQPQL 203 >UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xanthomonas albilineans RepID=D2UDX2_XANAL Length = 492 Score = 97.6 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 50/193 (25%), Gaps = 12/193 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEI 57 M + DLET G D + + D + P A I Sbjct: 14 MPDSFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPVATLI 73 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSP 116 G + RE + E E + T ++ FD + P+ Sbjct: 74 TGITPQQALREGINEADAFARIAEQMAQPQTCTLGYNSLRFDDEFIRHGLFRNFHDPYER 133 Query: 117 LTVGRVWHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIGD 168 G L D+ D L+ +A GV + H A+ D Sbjct: 134 EWRGGNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVRDGDAHEALSD 193 Query: 169 AAATAFCFDMLRH 181 AT R Sbjct: 194 VYATIGMARHFRR 206 >UniRef50_C4LJG9 Putative DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJG9_CORK4 Length = 256 Score = 97.6 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 12/179 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES---LYFVPHITVEQLAAADPKAMEINGY 60 L+ VD+ETTGLD D + VG++ ++ + + + ++ I+G Sbjct: 63 PLLAVDVETTGLDADRDRLLSVGMVAINGRAIPLATADHWLVRYHEGDVSVGQSATIHGI 122 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTV 119 + L +V + G + ++ +P+SPL V Sbjct: 123 TDSQLENGR----SLLDILTDVVNAAAGRALLAHLALIEHDFISTACERAVGVPWSPLCV 178 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + A L G+P + H+A+ DA A A + Sbjct: 179 VDT----MDLERRSAVSFGRRPGRGEVRLMNARYSRGLPSYHNHNALVDALACAELYLA 233 >UniRef50_Q15YI0 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15YI0_PSEA6 Length = 224 Score = 97.6 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 10/184 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +DLE T LD + + +G + + + V A+ ++ I+G Sbjct: 28 PFLCIDLELTSLDLNDTKILSIGWVEGKGKQISLQSCYYQVISTTASLNQSPVIHGLTAD 87 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + Q +A ++ + + + D T++ ++P + Sbjct: 88 HIAQG----QPLRIALEALKQFASSHVWVFHCTHLDMTVLNGVFKKLNIPLPTVVTLDTL 143 Query: 124 HHRLADLAAYAAGKLNIDPTEL-EGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 Y K P L R +P V H+A+ DA AT Sbjct: 144 R-----FGLYQLTKNLRPPPPNAVVLPVCRARYNLPAVPAHNALDDAMATLELLFAQIQK 198 Query: 183 AAAH 186 A Sbjct: 199 FAPK 202 >UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacteria RepID=Q483M2_COLP3 Length = 487 Score = 97.6 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 57/201 (28%), Gaps = 18/201 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEING 59 ++ D ET G++ P + + D ++ + T P+A + G Sbjct: 13 PSILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEACLVTG 72 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFSPL 117 + RE L+E + A + AG N FD + P++ Sbjct: 73 ITPQKAQREGLSEAEFAARIHTLFTQ-PNTCVAGYNSIRFDDEVTRYLLYRNFYDPYARE 131 Query: 118 TVGRVWHHRLADLAAYAAG-----------KLNIDPTELEGLDAVAERLGVPVVNRHSAI 166 + D+ K + + L+ + + H A+ Sbjct: 132 WQNGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEAAHDAM 191 Query: 167 GDAAATAFCFDMLRHTAAAHL 187 D AT L L Sbjct: 192 SDVYATIA-MAKLIKEKQPKL 211 >UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=EX1_BUCAI Length = 413 Score = 97.3 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 48/200 (24%), Gaps = 17/200 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITVEQLAA--ADPKAMEIN 58 + D ET G+ P + + D + + DP ++ I Sbjct: 8 TPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 67 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPL 117 + + E + ++ G N FD I Sbjct: 68 HITPQYTEKNGTNEYNFSQKIYDIL-MQSNTCVVGYNNINFDDEITRNIFYRNFFD-PYE 125 Query: 118 TVGRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIG 167 + + R L A L + + + +N H+A+ Sbjct: 126 WSWKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVS 185 Query: 168 DAAATAFCFDMLRHTAAAHL 187 D AT L L Sbjct: 186 DVYATIEI-AKLVKKKQPRL 204 >UniRef50_C1AA06 Exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AA06_GEMAT Length = 323 Score = 97.3 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 25/176 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV-----EQLAAADPKAMEINGY 60 +VVD+ETTGLD + +E G + D + +A I G Sbjct: 50 LVVDVETTGLDTARDVIIEFGAVPFDFDGEGRVYTVHPPLSYFEDPGRPIPAEASAITGI 109 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + A + N FD ++ R+ +P Sbjct: 110 TDDDVRGKRIDDAAVLAALDQ------AVLVIAHNAGFDRRMLERR-----LPAFAAKHW 158 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + + + LD + R+ H A D AT Sbjct: 159 ACSQQEVPWV---------RFGSRSQKLDYLLYRIARAFHTGHRAADDCLATLHLL 205 >UniRef50_Q4E271 Exonuclease, putative n=1 Tax=Trypanosoma cruzi RepID=Q4E271_TRYCR Length = 223 Score = 97.3 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 52/231 (22%), Gaps = 62/231 (26%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV-DTGESLY------FVPHITVEQLAAADPKAMEIN 58 I VDLETTG V +G + + G +L TV + +A ++ Sbjct: 4 ICVDLETTGFSAQRDDVVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAEAVH 63 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRG------------------------------ 88 G L + +L Sbjct: 64 GLSFEMLRDA----PPLEDVISDFAAFLIQLDGNLPQSGQTEENYRAKPGDLSAKKRCTA 119 Query: 89 ----------NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKL 138 N FD++ + R + + Sbjct: 120 ATTAGCVLTLPPVIAHNANFDASFLQRAVSRAGWRVVWDEYAPLT-----CTQSMFRALY 174 Query: 139 NIDPTELEGLDAVAERLGVPVVNR---HSAIGDAAATAFCFDMLRHTAAAH 186 + + L + GV R H A+ DA F L + Sbjct: 175 SHQAAD---LSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRLAEKWPSR 222 >UniRef50_A9KDF1 Ribonuclease T n=5 Tax=Coxiella burnetii RepID=A9KDF1_COXBN Length = 224 Score = 97.3 bits (241), Expect = 3e-19, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 65/196 (33%), Gaps = 24/196 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGES------LYFVPHITVEQLAAADPKAMEING 59 +VVD+ET GL+ +E+ + V+ + F H+ + AA DP ++EI Sbjct: 21 VVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEITR 80 Query: 60 YYERGLYREALTEQQTAVAWGEVQD------WLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 +R A+ E++ + R G N FD T + + Sbjct: 81 IDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKLK 140 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAA 171 SP H + T L +P HSAI DA Sbjct: 141 KSPF-------HAFTCFDTATLAAIVFGKTV---LAKALRAANLPFDKKEAHSAIYDAKC 190 Query: 172 TAFCFDMLRHTAAAHL 187 A F + + HL Sbjct: 191 AAELFCKITNQIDGHL 206 >UniRef50_D0JAY7 DNA polymerase III subunit alpha n=2 Tax=Blattabacterium RepID=D0JAY7_BLASB Length = 1434 Score = 96.9 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 61/195 (31%), Gaps = 26/195 (13%) Query: 5 LIVVDLETTGLDYDTA----------LPVEVGLLNVD-TGESLYFVPHITVEQLAAADPK 53 ++VD ETTGL V+ N D G+ + F I Sbjct: 2 YLIVDTETTGLPISYNFSITHTDNWPRIVQFSWQNHDILGDLIEFKNFIIKPDHYDIPFN 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSM 112 A +I+G + + + E + L + G N FD ++ + + + Sbjct: 62 AFKIHGITNEKAEKYGVD---LSFVLCEFRKSLEKSQCLIGHNLEFDKKVIECEFLRKKI 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDP----TELEGLDAVAER-LGVPVVNRHSAIG 167 S ++ D + + + L + ++ + N H A Sbjct: 119 EISFK------KKKILDTKEISVSYCKLPGNRKKFKWPTLSELYQKLFEEKIPNLHDAAN 172 Query: 168 DAAATAFCFDMLRHT 182 D ATA CF L Sbjct: 173 DVKATARCFLELLRI 187 >UniRef50_A4HVE4 Mitochondrial DNA polymerase I protein B, putative n=3 Tax=Leishmania RepID=A4HVE4_LEIIN Length = 1430 Score = 96.9 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 54/202 (26%), Gaps = 30/202 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ D+ETTGL+ T VEV + + H V + P+ + I+ Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVAMFDP----IENSTFHTLVNPQRSITPRTVGIHHITNA 819 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT----------FAGSNPA-FDSTIVARQRVTYSM 112 + V + +LR + G N D ++ R ++ Sbjct: 820 MVRDA----PTVDVVAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECHAP 875 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPT----------ELEGLDAVAERLGVPVVN- 161 + L + L + L V Sbjct: 876 ECQLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALNVRPEGD 935 Query: 162 RHSAIGDAAATAFCFDMLRHTA 183 H A D A + + A Sbjct: 936 LHRADTDTKALWYVLVNILGVA 957 >UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=A4ADV7_9GAMM Length = 482 Score = 96.9 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 53/201 (26%), Gaps = 19/201 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEIN 58 ++ D ET G+D P + L D +L + + P A I Sbjct: 4 SETFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDACLIT 63 Query: 59 GYYERGLYREALTEQQT-AVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSP 116 G + E + E Q + E G G N FD T+ ++ Sbjct: 64 GITPQTALAEGVVEAQFMSTILDEFMK--PGTCAVGYNSLRFDDTVTRATLYR-NLRDPY 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAI 166 R + L+ + + G+ H A+ Sbjct: 121 AREYGDGRSRWDLIDVVRTAYALRPEGLNWPTRDDGLPSFRLEDLCKANGLEQGQAHDAL 180 Query: 167 GDAAATAFCFDMLRHTAAAHL 187 D AT ++ L Sbjct: 181 VDVKATIALARAIKDK-QPRL 200 >UniRef50_D2B9E4 DNA-directed DNA polymerase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B9E4_STRRD Length = 189 Score = 96.9 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 47/155 (30%), Gaps = 22/155 (14%) Query: 8 VDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 VD+ETTG E+ L+++D + H V+ A+ ++G E + Sbjct: 2 VDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSLVDPRR--GTGAVHVHGITEAMVE 59 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 EV + G N +FD + V H Sbjct: 60 GA----PVIEEVLDEVWQRIAGRVLVAHNVSFDLRFLK--------------VLPGSHWL 101 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 L I + L A +R G+P N Sbjct: 102 TEALCTQQLAPDLIPGGK-WTLGACCQRAGIPFSN 135 >UniRef50_Q9HIG3 Putative uncharacterized protein Ta1376 n=1 Tax=Thermoplasma acidophilum RepID=Q9HIG3_THEAC Length = 188 Score = 96.9 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 65/184 (35%), Gaps = 17/184 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +I +D ETTGLD + VG + V S F + A D A+ +NG+ + Sbjct: 1 MIFIDTETTGLDPTKCSVISVGAV-VYEDPSSRFYMEARPDPDAMIDDGALAVNGFTKEY 59 Query: 65 LYREALTEQQTAVAWGEVQDWL----RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L +W T AG N FD + ++++ + S+ + Sbjct: 60 LS---SIANAMYDMLTTFTEWYASNSSDYTVAGYNIDFDISFLSQECLMNSVRMIRIDRR 116 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDML 179 + Y G+ LD + LG+ H+A+ A A A + ML Sbjct: 117 IDLKNLFETSDLYKGGRK--------RLDDLLMALGLGTERKPHNALYGALAEAEAYAML 168 Query: 180 RHTA 183 Sbjct: 169 VEKR 172 >UniRef50_A6GQ42 DNA polymerase III subunit epsilon n=1 Tax=Limnobacter sp. MED105 RepID=A6GQ42_9BURK Length = 308 Score = 96.5 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 57/179 (31%), Gaps = 27/179 (15%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGE------SLYFVPHITVEQLAAADPKAMEI 57 +++VVD ETTGLDY T +EVG + ++ + ++ E A P+ I Sbjct: 45 KVLVVDTETTGLDYATCEVIEVGAVLIEVDQDTGAIGAVLGTFGGLEEPKVAITPENSAI 104 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + E E F N AFD + R+ P+ Sbjct: 105 HGITNEMVKGQRFDEAALKALCSE------AALFVAHNAAFDKPFMLRRF-----PWLEK 153 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 ++ L L+ + G H A+ D A Sbjct: 154 SIWACTFRELPWTQE---------NYSGRKLEYLLSDCGY-FHGAHRAVEDCNALVHVL 202 >UniRef50_B9Z8P9 Exonuclease RNase T and DNA polymerase III n=3 Tax=Neisseriaceae RepID=B9Z8P9_9NEIS Length = 202 Score = 96.5 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 64/185 (34%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGY 60 + +I + TT LD A + +G + + + + V+ + + ++G Sbjct: 27 SDDVISLACNTTSLDVAEAELLTIGAVRLSGNRIVTSEALDLLVKPGRPLTREGVGLHGL 86 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPL 117 R L A + D++ G G FD ++ + +P + Sbjct: 87 RPRDLSGGL----DAEAAVRCLLDFIGGRPVLGYYLEFDIAVLDKYLRPLLGIGLPNRQV 142 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + ++ + + + A+ + LGVPV+ RH A+ A A + Sbjct: 143 EISGRYYDY--------KLRQQPNGRVDLRMAALIDDLGVPVLPRHDALNKAITAAMLYL 194 Query: 178 MLRHT 182 L+ Sbjct: 195 ALKRR 199 >UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=cellular organisms RepID=B7AB83_THEAQ Length = 1684 Score = 96.5 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 14/183 (7%) Query: 1 MAKQ--LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M + +DLE T D + A +E+ + F ++ + + D +A I Sbjct: 1 MNAPSFFVALDLEATSPDPEEAEILELAAQDSQGR---TFHRYLATNKPLSKDHEAFRIT 57 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPL 117 RE + ++ A E D+L G + G N +D ++ R + P Sbjct: 58 QIPFEEYEREKVPPER---ALREFLDFLGGRSLLGHNLLRYDLPLLERALGEVGLNLPPE 114 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCF 176 + RLA L + D L + L + H A D AT Sbjct: 115 AYRALDTLRLAHLV----FPIPKDGLAGYRLGDLYHYLTQEELEGAHRAATDVGATWRIL 170 Query: 177 DML 179 + L Sbjct: 171 EAL 173 >UniRef50_B3EM65 Exonuclease RNase T and DNA polymerase III n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3EM65_CHLPB Length = 159 Score = 96.5 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 16/124 (12%) Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E ++ + N +FD + + + + Sbjct: 8 ITNEMLKDK----PCCEEVMLEFSGFIADHNIVAHNASFDRRFLDSELKRANRKYEGSCC 63 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDM 178 + + + L + G+P H A+ DA TA+ + Sbjct: 64 -----------CSLLLSRRVYQDSPNHTLQTLVSHAGIPETGTFHRALADAEMTAYLWLS 112 Query: 179 LRHT 182 + Sbjct: 113 MIDR 116 >UniRef50_A8QYU9 DNA polymerase III subunit epsilon n=3 Tax=Legionellaceae RepID=A8QYU9_9GAMM Length = 306 Score = 96.5 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 53/180 (29%), Gaps = 27/180 (15%) Query: 7 VVDLETTGLDYDTALPVEVGLLNV----DTGESLYFVPHITVE-QLAAADPKAMEINGYY 61 ++DLET G+D +E+G+L+ + G + + P+ +I G Sbjct: 47 IIDLETMGMDATQDEIIEIGMLSFSFSNEDGILGIKHTYNELNAPGKPIPPEITKITGIR 106 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + E + N FD + L + Sbjct: 107 NEDVIGKTINWNFVLQVLKE------SHLIICHNAGFDRNFLE------------LQTPQ 148 Query: 122 VWHHRLADL---AAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 ++ L E LD + +LG + H AI D AT Sbjct: 149 DIQKQIITLPFGCTIKDIDWKERDYESSKLDYLNWKLGY-FYDGHRAINDCWATLNLLLQ 207 >UniRef50_B4SAW0 Exonuclease RNase T and DNA polymerase III n=2 Tax=Chlorobium/Pelodictyon group RepID=B4SAW0_PELPB Length = 190 Score = 96.5 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 19/191 (9%) Query: 5 LIVVDLETTGLD-----YDTA-----LPVEVGLLNVDTGESLYFVPHITVEQLA-AADPK 53 + D ETTGL T V++ L+ D + F ++ Sbjct: 2 YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAIIKPEGFVIPSS 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSM 112 A++I+G + R L + + + N +FD IV + + M Sbjct: 62 AVQIHGISTQ---RALLEGKPLGQVLQSFYELVADAEVLVAHNISFDEKIVGSELIRAGM 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVVNRHSAIGDAAA 171 P S + ++ + L + + G H+A D A Sbjct: 119 PNSLPSKRKICTMESTTDFC---AIKGPYGNKWPKLSELYFQLFGTVFNEAHNAASDIQA 175 Query: 172 TAFCFDMLRHT 182 TA CF L+ Sbjct: 176 TAKCFWELKRR 186 >UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteriaceae RepID=EXOX_ECOL6 Length = 220 Score = 96.5 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 36/176 (20%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 ++D ET GL VE+ ++V G+ + + H V P+AM I+ E + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRITEAMVA 59 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + + + N +FD ++ + Sbjct: 60 DK----PWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEW---------------- 96 Query: 127 LADLAAYAAGKLNIDPTELEGLDAV--AERLGVPVV---NRHSAIGDAAATAFCFD 177 + + + A+ +L V + H A+ D TA Sbjct: 97 ---ICTMKLARRLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 >UniRef50_B4VF18 DNA polymerase III subunit epsilon n=9 Tax=Streptomyces RepID=B4VF18_9ACTO Length = 246 Score = 96.1 bits (238), Expect = 5e-19, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 4/157 (2%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 L+ DLETTG + + V ++ V GE + + +A I+G Sbjct: 9 LVGFDLETTGTEPGESRIVTAAVVEVRGGEVRERRGWLA-DPGIPIPEQASAIHGISTAR 67 Query: 65 LYREALTEQQTA-VAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 E ++ A + + R N AFD T+++ + + +P +G Sbjct: 68 AVAEGRPVREVAQEVAAALVEHWRRGAVVVAYNAAFDLTLLSAELARHGLPSLSDRLGGA 127 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV 159 + D ++ L+AV GV + Sbjct: 128 PTGPVVDPLTIDRA-VDRYRRGKRTLEAVCGVYGVTL 163 >UniRef50_A9VVI2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Bacillus weihenstephanensis KBAB4 RepID=A9VVI2_BACWK Length = 271 Score = 96.1 bits (238), Expect = 5e-19, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 52/185 (28%), Gaps = 23/185 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V DLETTGLDY VE+ + D E + + + ++ + Sbjct: 14 FTVFDLETTGLDYKNEQVVEIAAIRTDLEQELGRMHILVKLNEGKKLPDFLVDNTDLRDY 73 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + ++ + FD + P L + Sbjct: 74 MLVNGMVEH----QALINLMAFMGNSIVVAHYAPFDFAYL---FKALIAPELFLCTRSIE 126 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD-MLRHT 182 D + L AER GV + H A+ D AT L Sbjct: 127 RLLTPD--------------KSASLAPTAERRGVKLEGAHRAMNDIEATIGVLKSQLSEI 172 Query: 183 AAAHL 187 + Sbjct: 173 KERGI 177 >UniRef50_C5YXX8 Putative uncharacterized protein Sb09g000300 n=1 Tax=Sorghum bicolor RepID=C5YXX8_SORBI Length = 319 Score = 96.1 bits (238), Expect = 5e-19, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 47/179 (26%), Gaps = 16/179 (8%) Query: 3 KQLIVVDLETTGLDYDTAL-PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++++ D+ETT +E G + V + + + T+ + + Sbjct: 9 REIVFFDVETTAPTPAGRWWLLEFGAILVCPRKLVEVASYDTLIRPGDLSVAVTKRF--- 65 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVG 120 + + ++ + L G +AG N FD + P Sbjct: 66 -SDVE-AIASAPPFKDVADKIFEILDGRVWAGHNIQRFDCPRIREAFADIGRPAPEPAGV 123 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + +A G+ H ++ DA Sbjct: 124 IDSLNV--------LAADFGRRAGDLKMATLATYFGIGKQK-HRSLDDARMNLEVLKHC 173 >UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZN4_HALNC Length = 495 Score = 96.1 bits (238), Expect = 6e-19, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 63/197 (31%), Gaps = 16/197 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTG-ESLYF--VPHITVEQLAAADPKAMEINGYY 61 + D ETTG D P++ L + E + + T+ P+A+ + G Sbjct: 3 FLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGIL 62 Query: 62 ERGLY-REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L E + A ++ FD+ ++ ++ Sbjct: 63 PQTLASSGGRPEAEFAALIHAEMMQPGTCAVGFNSLRFDAELLRFMFWR-NLRDPYAHEW 121 Query: 121 RVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGDAA 170 + + R L A A +L L+A+ + + N H A+GD Sbjct: 122 KSGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKVNVIAHANAHDALGDVE 181 Query: 171 ATAFCFDMLRHTAAAHL 187 AT F L + L Sbjct: 182 ATLA-FARLMRAQSPKL 197 >UniRef50_B8H5Y8 DNA polymerase III epsilon-like protein n=2 Tax=Caulobacter vibrioides RepID=B8H5Y8_CAUCN Length = 209 Score = 95.7 bits (237), Expect = 6e-19, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 45/156 (28%), Gaps = 16/156 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++I +D ET A P +GL ++ GE H M +G Sbjct: 9 KVIAIDFET--ASEQRASPCSIGLAWIEDGEVARVEHHYIRPPGNRFAAFNMAFHGIRPE 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ L G N +FD +++ R Y +P Sbjct: 67 HVADA----DEWPDVLERIRPELEGALVLAHNASFDISVIRRTCEHYDVPAPG------- 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV 159 L + L+ V LGV Sbjct: 116 ---FDYLCTVQVARSVWPELPSHKLNVVCGHLGVDF 148 >UniRef50_B2UMX8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMX8_AKKM8 Length = 197 Score = 95.7 bits (237), Expect = 6e-19, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 59/190 (31%), Gaps = 32/190 (16%) Query: 5 LIVVDLETTGL-DYDTALPVEVG--LLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +D E+ G +T PV++G E + +I VE+ A +++G Sbjct: 13 FAAIDFESAGAARGETDQPVQIGIAACPRLEDEPELWTSYIAVEKPVLWS--ASQVHGIT 70 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L W E++ L G NPA + + R + Sbjct: 71 TEMLADA----PSFPSLWPEIRSRLGQAVVVGHNPATERKFLRR-FPGHGFG-------- 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--------VPVVNRHSAIGDAAATA 173 L A G++ + L ++ LG +P H A+ DA A+ Sbjct: 118 ------PWLDTLALGRMCVPGLADYSLSSLCGALGLTCSVEALLPARRWHDALYDALASL 171 Query: 174 FCFDMLRHTA 183 L Sbjct: 172 LIVRFLVKEL 181 >UniRef50_B5GC70 DNA polymerase III n=1 Tax=Streptomyces sp. SPB74 RepID=B5GC70_9ACTO Length = 243 Score = 95.7 bits (237), Expect = 6e-19, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 5/161 (3%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ D+E+TG+D +TA V + G +L + +A ++G Sbjct: 6 QRYCAFDIESTGVDVETARIVT-ACVAQVRGGALPETRSWLADPSIEIPDEATAVHGITT 64 Query: 63 RGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + + L G N +D T++ R+ + P +G Sbjct: 65 DRARAEGRPAGEVVEEITTLLHSCLLAGAPVVAMNARYDLTLLDRECRRHERPTLADRLG 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 L L +++ L A+AE VP+ Sbjct: 125 GDVRPVLDPLVLDR--QVDRYRRGKRTLTALAEHYRVPLDG 163 >UniRef50_C5V7N5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7N5_9PROT Length = 234 Score = 95.7 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 13/177 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGY 60 A + +VVD+ET+GL+ + +G + V G+ V Q + + ++G Sbjct: 39 ATRCVVVDVETSGLNLWEDRLISIGAVAVVNGKIELGDSFYIVLQQEIVSEKENILLHGI 98 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 G +A +L+ + + FD T++ R Y +G Sbjct: 99 ---GGAAQAEGVPAADALLAF-LAFLQKDPLIAFHVTFDQTMIVRAISKY--------LG 146 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + +D+A LD + RH+A+ DA TA F Sbjct: 147 FSFKQPWSDMAYVMPALNPELAARFRSLDDWIAHFDIRNDARHNALADALVTAQLFQ 203 >UniRef50_A7B9H5 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7B9H5_9ACTO Length = 250 Score = 95.7 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 57/193 (29%), Gaps = 18/193 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-------YFVPHITVEQLAAADPKAM 55 + D ETTG+ V L+ G S V + +A Sbjct: 6 DPWMGFDTETTGVRALKDRLVTGALVLRIDGASYRSGVSAPDQVATWLTDPGVEIPEQAT 65 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQ-----DWLRGNTFAGSNPAFDSTIVARQRVTY 110 ++G R+ E+ WLRG N +D T+V ++ + Sbjct: 66 AVHGITTEQARRDGRP---IEEVLHELAGSIVEHWLRGYPVVAFNATYDITLVNQELRRH 122 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG-VPVVNRHSAIGDA 169 + + + L KL+ + L +A G V + H+A D Sbjct: 123 RLGSFEERLEGAPMLIVDPLVLDR--KLDRFRKGKKTLTEMAPVYGAVASPDAHTAEVDV 180 Query: 170 AATAFCFDMLRHT 182 A T + Sbjct: 181 AMTLDVLAGMVDK 193 >UniRef50_C0VTN4 DNA polymerase III, epsilon subunit n=3 Tax=Corynebacterium RepID=C0VTN4_9CORY Length = 224 Score = 95.7 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 56/187 (29%), Gaps = 22/187 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ DLETT D A V ++ +D ++ + +A +++G Sbjct: 8 KMVAFDLETTTNDPLKAHVVTSSVIRIDGSN--ADETYLLADPGIPISEEAEKVHGISNE 65 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT-----FAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + + +R N FD TI+ + +++ + Sbjct: 66 YAKANGEPH---DDVVAKTVELIRRGWDEGFTLIVFNGCFDLTILHQCSPDFTIDGLVVD 122 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + K + L A++E + + H++ D+ A A Sbjct: 123 PYIIDK------------KKDHYRAGKRNLSAMSEYYEIRLDKAHNSSADSLAAARIAWK 170 Query: 179 LRHTAAA 185 Sbjct: 171 QARRWPE 177 >UniRef50_C5BZW8 Exonuclease RNase T and DNA polymerase III n=6 Tax=Actinomycetales RepID=C5BZW8_BEUC1 Length = 283 Score = 95.7 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 54/181 (29%), Gaps = 4/181 (2%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ D ETTG+D V L+ + L ++ A I+G Sbjct: 11 PLVGFDTETTGVDVAHDRIVTAALVVRHGLQGLPQERTWIIDPGVEIPEAASAIHGVTTE 70 Query: 64 GLYREALTE--QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R +A G N ++D TI+ + V + +P +GR Sbjct: 71 HARRLGRPPAEALEEIAAALAAAIADGAAVVAFNASYDLTILEHELVRHHLPTLHERLGR 130 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L L A L +A GV H+A D AT L Sbjct: 131 RPDAVLDPLVLDRALDRFRPG--KRKLVDLAALYGVSTGELHAADVDVTATLDVLRALVG 188 Query: 182 T 182 Sbjct: 189 R 189 >UniRef50_UPI000038277F COG0847: DNA polymerase III, epsilon subunit and related 3''''-5'''' exonucleases n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038277F Length = 187 Score = 95.3 bits (236), Expect = 8e-19, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 55/169 (32%), Gaps = 7/169 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ +D ETTGLD D V L+ + G V ++ +A I+G Sbjct: 10 PLLGLDTETTGLDVDVDRVVTAALVLREPGA--THVRTWLLDPGVEIPAEATGIHGITNA 67 Query: 64 GLYREALTEQQTAVAWGEVQ--DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + G N AFD I+ + V + +P +GR Sbjct: 68 HATAHGSAPAVALDEIATLVVDAQRDGVPLVAYNAAFDLAILDTELVRHGLPTLAARLGR 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDA 169 L L A D L + R V V R H+A GD Sbjct: 128 PVRPVLDPLVLDRAWDPARDG--KRRLVDLCARYEVLDVGRLHTADGDV 174 >UniRef50_B9JNT5 Polymerase epsilon subunit protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JNT5_AGRRK Length = 340 Score = 95.3 bits (236), Expect = 8e-19, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 28/179 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTG-----ESLYFVPHITVEQLAAADPKAMEINGY 60 +++D ETTGL++ +E+GL+ + V + P+ + G Sbjct: 89 VILDTETTGLNHRNDEIIEIGLVAFTFDDFGHIGDVIGVYGGLQQPGTPIPPEITRLTGI 148 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + +V+ + N FD FS + Sbjct: 149 TDEMVEGQMID-------MQQVRRMVAPADLVIAHNAGFDRPFCEA--------FSNVFA 193 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + W ++++ A E L + + G H AI D A D Sbjct: 194 TKAWACSVSEIDWNAR------GFEGTKLGYLIGQAGYFHEG-HRAIDDCFALLEVLDR 245 >UniRef50_A1U7Q5 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U7Q5_MARAV Length = 291 Score = 95.3 bits (236), Expect = 8e-19, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 58/197 (29%), Gaps = 34/197 (17%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGL----LNVDTGESLYFVPHITV--EQLAAADPKAME 56 + ++ +D ETTG +E+GL ++ TGE + V ++ + + Sbjct: 45 QAVVWLDCETTGFQAGHDKIIELGLTKGYVDPITGELISLVASVSFYEDPGFPLPEIITQ 104 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 I G + + + Q + N +FD + Sbjct: 105 ITGITDEMVSGRTIDGVQVREW------FTDDPIVVAHNASFDRPFFESRFPMLD----- 153 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 +L + E L+ + RLG H A DA ATAF Sbjct: 154 ---------QLRWACSMKDIPWQEYGFESTKLEYLLYRLGY-FYEGHRASIDAIATAFLM 203 Query: 177 -------DMLRHTAAAH 186 L AA Sbjct: 204 SQVPRASRALLEAEAAS 220 >UniRef50_A6GP03 Exonuclease n=1 Tax=Limnobacter sp. MED105 RepID=A6GP03_9BURK Length = 244 Score = 95.3 bits (236), Expect = 9e-19, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 57/200 (28%), Gaps = 29/200 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTG-----ESLYFVPHITVEQLAA------- 49 + +V+D+E++GL+ + V + V + Sbjct: 34 PDRWVVLDVESSGLNPKKDRLISVAATAIVFDAQRRPRISLTDTFEVVIKQPPEIVDMIE 93 Query: 50 ---ADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ 106 D + I+G + VA E ++ + + FD ++ + Sbjct: 94 FEAIDKNNILIHGIGI----GAQQKGVKAEVALSEFLRYVGHSPLIAFHSWFDEILINKA 149 Query: 107 RVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAI 166 +GR H DL A + LD +R G+ RH A Sbjct: 150 LRKV--------LGRTTHRHWLDLEHLA--AVLHKENHQLPLDVWMQRYGIECEQRHQAA 199 Query: 167 GDAAATAFCFDMLRHTAAAH 186 D ATA L Sbjct: 200 ADVLATAQLLMKLWPMLQKR 219 >UniRef50_Q01D40 Xpmc2 protein (ISS) n=2 Tax=Mamiellales RepID=Q01D40_OSTTA Length = 290 Score = 95.3 bits (236), Expect = 9e-19, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 11/185 (5%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D E G+ D V + V+ ++ + ++G + Sbjct: 93 LALDCEMVGVGEDGRRSVLARVSVVNEDGNVILDVFVQ--PTERVTDYRTAVSGVRPNDV 150 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 E + V ++ + LRG G + D + P ++H Sbjct: 151 KAE-SGARTFRVVQAQMSELLRGKVLVGHSLKNDMKAL-----MLDHPKRDTRDTSLYHP 204 Query: 126 RLADLAAYAAGKLNIDPTELEG-LDAVAE-RLGVPV-VNRHSAIGDAAATAFCFDMLRHT 182 L L +A LG+ + HS++ DA A + Sbjct: 205 LTRPLRPEERCVPGAPRGRGCRALRDLARQHLGLEIQTGEHSSVDDARAALALYKKFAKK 264 Query: 183 AAAHL 187 A L Sbjct: 265 WEASL 269 >UniRef50_D1N0X4 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0X4_9BACT Length = 268 Score = 95.3 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 6/128 (4%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + L+V D+E+TG+ VE+ +L + + P A I+G Sbjct: 7 LERPLVVFDIESTGVMPQRDRIVEIAVLKIFPDGHTQNTVR-RLNPEMPIPPGATAIHGI 65 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + + ++ ++ AG N FD ++ + F Sbjct: 66 SDADVAD----CPTFLLIAEKLFRYIEDCDLAGYNITGFDIPMLEAEFKRAGFTFKVDDR 121 Query: 120 GRVWHHRL 127 + + + Sbjct: 122 KVIDAYNI 129 >UniRef50_Q7S9B7 RNA exonuclease 4 n=1 Tax=Neurospora crassa RepID=REXO4_NEUCR Length = 406 Score = 95.3 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 52/179 (29%), Gaps = 28/179 (15%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G A +++ + V A ++G Sbjct: 215 KYLSIDCEMVGTGPSGATSVLARCSIVDFHGHQIYDS----YVRPTAFVTDWRTHVSGIS 270 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 +R + + + V L+G G + D ++ Sbjct: 271 KRHMA----SARSFESVQATVAALLKGRILVGHDVKHDLEVL---------------GFE 311 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVP-VVNRHSAIGDAAATAFCFDM 178 H + D A Y+ + L +A+ LG+ +HS++ DA F Sbjct: 312 HPHRDIRDTAKYSGFRK-YGHGPKPSLRVLAKEVLGIEIHQGQHSSVEDARVAMLLFRK 369 >UniRef50_Q4IEV5 RNA exonuclease 4 n=6 Tax=Sordariomyceta RepID=REXO4_GIBZE Length = 319 Score = 95.0 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 28/179 (15%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E G+ V +++ + V+ ++G Sbjct: 132 KYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDS----YVKPKEKVTNWRTAVSGIS 187 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + E+ LRG G + D + + Sbjct: 188 Q----KSMRFARDFEEVQAEIDKLLRGRILVGHDLKHDLEAL---------------ILS 228 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDM 178 + D A ++ K L +A++ LGV + HS+I DA AT F Sbjct: 229 HPGKDIRDTAKFSGFKK-YANGRKPSLRVLAQQLLGVEIQGGEHSSIEDARATMLLFRK 286 >UniRef50_D1N3T8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3T8_9BACT Length = 205 Score = 95.0 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 46/163 (28%), Gaps = 21/163 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA---MEINGYY 61 ++ +D ET D + V + G + + + + + ++G Sbjct: 2 ILALDFETANSDPGSVCAVGLAW---FDGARITGSWESLIRPHRSCRWFSRLNIAVHGIT 58 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + W E+ G+ N AFD ++ R Y Sbjct: 59 PEMVAQA----PEWGDVWPELAPHFAGSMVIAHNAAFDVPVLLRTLELYGFAPPEFDFF- 113 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + + E L+ V++ LG H Sbjct: 114 ---------CTCKSARRVWPGLENHKLNTVSDFLGWEF-RHHD 146 >UniRef50_Q1WDI5 DNA polymerase III n=5 Tax=root RepID=Q1WDI5_9CAUD Length = 238 Score = 95.0 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 6/158 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L D ETTG+D ++ V +L V G+ + + A ++G Sbjct: 7 RLCAFDTETTGVDVESDRIVTAAVLLVGGGQPTETHTWLA-DPGIDIPEAASAVHGVTSE 65 Query: 64 GLYREALTEQ-QTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E + + D + G N FD TI+ R+ + +P G Sbjct: 66 RARAEGRPAPMVVSEVAALLADQIVTGVPVVAMNARFDVTILDRELARHGLPSLAEQAGA 125 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV 159 + D + L +A GV + Sbjct: 126 --EPLVLD-PLVMDKRAEKYRRGGRKLVDLARHYGVQL 160 >UniRef50_C0NP89 RNA exonuclease n=11 Tax=Onygenales RepID=C0NP89_AJECG Length = 533 Score = 94.6 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 27/179 (15%) Query: 4 QLIVVDLETTGL--DYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G+ + D + + GE + + + ++ ++G Sbjct: 125 RYVALDCEMVGVGQNPDRDSALARVSIVNYNGEQV-YDSFVLPKE--EVTDWRTHVSGVS 181 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + V +V L G G D + + Sbjct: 182 PKHMTDAR----EFEVVQRDVAGILDGCILVGHAVRNDLDAL---------------LLS 222 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVVN-RHSAIGDAAATAFCFDM 178 H + D + + + L +A E LG+ + HS+I DA AT F Sbjct: 223 HPKHDIRDTSKHPPYRKIAGG-GSPRLKILASELLGLEIQGAAHSSIEDAQATMLLFRR 280 >UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJV3_9GAMM Length = 517 Score = 94.6 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 52/199 (26%), Gaps = 15/199 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEIN 58 + D ET G + + D ++ + DP A++I Sbjct: 8 PPSYLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVIDPGAVQIT 67 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFSP 116 L + L+E + + A T G N FD + P+ Sbjct: 68 RLSPLELEQTGLSEWEFSQAVHNAMAQPNTCTT-GYNSIRFDDECSRFLFYRNLINPYER 126 Query: 117 LTVGRVWHHRLADLAAYAAGKLNI--------DPTELEGLDAVAERLGVPVVNRHSAIGD 168 L D+ D + L+ + G+ N H A+ D Sbjct: 127 EWKNGNSRWDLLDVVRMTHALRPDGIEWPRRDDGSPSFRLEHLTAANGLSHANAHDAVSD 186 Query: 169 AAATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 187 VKATIALAQ-LIRKQQPKL 204 >UniRef50_Q47UC9 Exonuclase n=2 Tax=Alteromonadales RepID=Q47UC9_COLP3 Length = 228 Score = 94.6 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 15/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYE 62 +++ VD ETTGL+ + VG L + + + + + + + I+ + Sbjct: 43 EILAVDFETTGLNAKQDKLLSVGFLTLKKQQMSLKTSYHQIIKTKAQLEESNVIIHHITD 102 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMP--FSPLTV 119 + Q A+ + L G + +A Y M F + Sbjct: 103 S----QKEQGQALAIVVEALLKALAGKVMLVHFARIERQFLAEACYELYGMAPIFPMIDT 158 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + RL + L + +P + H+A+ DA ATA F Sbjct: 159 LALAKRRLD-------KRDVAYDPSELRLTNLRNNFQLPEHHAHNALNDAIATAELFMAQ 211 Query: 180 RHTA 183 A Sbjct: 212 MSKA 215 >UniRef50_Q0F2C4 DNA polymerase III subunit epsilon n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2C4_9PROT Length = 310 Score = 94.6 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 27/187 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD----TGESLYFVPHI--TVEQLAAADPKAMEING 59 +V+D ETTGLD +E+G + +G + + + A ++ G Sbjct: 40 LVIDTETTGLDTTADTIIELGFVAFSYDAGSGRIYEVLHNYDGFEDPGAPLSDVVKQLTG 99 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + L + + + + N AFD ++ R+ PL Sbjct: 100 ISDAMVAGQRLDDAEIETWLK------KADLLIAHNAAFDRPMLERRL--------PLAA 145 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + W D+ A LD +A RLG H A+ DA AT Sbjct: 146 EKNWACTFCDINWDAE------GIASRKLDYIACRLGYFFDG-HRAVVDAQATLHLLTRA 198 Query: 180 RHTAAAH 186 + Sbjct: 199 MPISGRA 205 >UniRef50_Q6ML77 DNA polymerase III polC-type n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6ML77_BDEBA Length = 295 Score = 94.6 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 49/177 (27%), Gaps = 27/177 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGES------LYFVPHITVEQLAAADPKAMEING 59 ++D+ETTGL+ +E+G+ ++ + + P+ + G Sbjct: 47 AILDVETTGLNQTEDTIIEIGIRQFLFNKNSGEVLAVTKSYSSFQDPGKPISPEIQALTG 106 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + E N FD + R+ Sbjct: 107 ITDEMVAGKQIDWTAVDALLNE------CQLIIAHNAKFDRPFIDRRSK----------- 149 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 ++ + + L+ + G + H AI D A + Sbjct: 150 ---TSPERVWACSFKQVEWSDKGFTSPKLELLNIYHGF-FTDSHRAINDVDALLYLL 202 >UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T43_SULDN Length = 234 Score = 94.6 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 LI +D+ETTGL+ + +G++ V F + V + KA IN Sbjct: 2 LIFLDVETTGLE-NGDKICSIGIICVSETAI--FSKYELVNEGKKISSKASSINHITNEM 58 Query: 65 LYREALTEQQ-TAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + T E + + +T N FD ++ L G +W Sbjct: 59 IKDKPKFKDSKTWEILHE--NNNQSSTIIAHNVNFDLKML-------------LQSGFLW 103 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN------------RHSAIGDAAA 171 ++ D K I E L + L + H+A+ DA Sbjct: 104 QGKVVDT--LRVTKHLIPECEEFSLQFLRYELKLYKDEKKEAAKYSAEISAHNALSDALH 161 Query: 172 TAFCFDMLRHTAA 184 ++ L Sbjct: 162 VKLLYEYLLEIKE 174 >UniRef50_Q5NWQ5 Putative exonuclease n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWQ5_AZOSE Length = 342 Score = 94.2 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 26/177 (14%) Query: 9 DLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV------EQLAAADPKAMEINGYYE 62 D+ETTGL D+ +++GL+ + V + + + + G + Sbjct: 47 DVETTGLKKDSDKIIDIGLVLAEFDRVSGQVLRVLERYSGFEDPGRPIPEEITRLTGIRD 106 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + + N FD + P Sbjct: 107 EDVLEQTFDDARVEALIAR------ADLVVAHNAPFDRGFLE-----LRFPSFQKKWWAC 155 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 T L+ +A ++G H A+ DA T F + Sbjct: 156 SQREAPWSQMM---------TGSTKLEWLAFQIGGCFYEAHRALVDAEVTLFILAQM 203 >UniRef50_Q08237 RNA exonuclease 4 n=12 Tax=Saccharomycetaceae RepID=REXO4_YEAST Length = 289 Score = 94.2 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 48/179 (26%), Gaps = 27/179 (15%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E G+ + + ++N L V+ ++G Sbjct: 120 KYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEF----VKPREKVVEWRTWVSGIK 175 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A + D L G G D + + Sbjct: 176 PEHMKNAI----TFKEAQKKTADILEGRILVGHALKHDLEAL---------------MLS 216 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPV-VNRHSAIGDAAATAFCFDM 178 L D + + + + L + L + + HS++ DA AT + Sbjct: 217 HPKSLLRDTSRHLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLLYKK 275 >UniRef50_D1B7G9 Exonuclease RNase T and DNA polymerase III n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B7G9_THEAS Length = 280 Score = 94.2 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYY 61 +D ET + P VG++ V E + + + +P + ++G Sbjct: 2 DFAAIDFET--ANRFHESPCAVGVVVVRQWEIVEEASFLILPHRDFRFFEPMNVRVHGIT 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + L+ + A +V ++G N FD ++ R YS+ + Sbjct: 60 PRRV----LSSPEFPDALEDVISMVQGLPLMAHNARFDLEVLMRTMALYSLGEARFDWVC 115 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LR 180 GL+++AE LG P N H + DA A L Sbjct: 116 SLRLARRAFRLRRC-----------GLESMAEHLGFPF-NHHDPLDDARLCAKVAMASLL 163 Query: 181 HT 182 Sbjct: 164 EL 165 >UniRef50_B5K1P1 Exonuclease n=4 Tax=Octadecabacter antarcticus RepID=B5K1P1_9RHOB Length = 206 Score = 94.2 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 58/184 (31%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I +D+ET G ++GL V ++ + ++ + E++G Sbjct: 20 RFIALDVETAGKTIGG--ICQIGLCFVSNTGAVQTYS-VLIDPEEPFEQFNTELHGISAD 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + + D L + + FD + Y +P + Sbjct: 77 TVAGAGI----FPMVYAALFDLLNTHNLIQHS-TFDEKALTSDCARYGLPM-------IT 124 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 H + + GL + + LG+ + H A DA A+A Sbjct: 125 SHWTNSVTVARQAWPALKGAGGHGLANLKKHLGLEF-HHHDAGEDARASATVILRAEDVL 183 Query: 184 AAHL 187 L Sbjct: 184 GMPL 187 >UniRef50_Q0IXT1 Os10g0407500 protein n=5 Tax=Magnoliophyta RepID=Q0IXT1_ORYSJ Length = 517 Score = 94.2 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 49/185 (26%), Gaps = 19/185 (10%) Query: 3 KQLIVVDLETTGLDYDTA----LPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAM 55 ++ D+ET+ A +E G + V + + T+ + ++ Sbjct: 28 PEIAFFDVETS--VPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASV 85 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPF 114 NG + + + ++ G +AG N FD + P Sbjct: 86 RCNGITRDAVAAAPAFRDVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPP 145 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + D K + ++A G+ H ++ D Sbjct: 146 PEPKG-------MIDTLPLLTQKFGR-RAGDMKMASLANYFGLGR-QSHRSLDDVRMNLE 196 Query: 175 CFDML 179 Sbjct: 197 VLKYC 201 >UniRef50_UPI0000E474E4 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E474E4 Length = 225 Score = 94.2 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 21/188 (11%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++++ +D E GL + + +GE + + ++ ++ + +G Sbjct: 32 REVVAIDCEMVGLGPKGRFTALARCSIIHHSGEII-YDSYVKPDEP--ITDYRTKWSGIR 88 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + A +V++ L+ G D P V Sbjct: 89 PRNMVNAI----PFNEAQEQVKNLLKDKIVIGHAVWND-------FQALKFSHPPNDVRD 137 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDML 179 +L + P + GL ++A+ LG+ V HS++ DA A + ++ Sbjct: 138 TSKCKLLAEIYGSKC----TPGQHLGLKSLAKYLLGIDVQRGEHSSVEDARAAMDLYKLV 193 Query: 180 RHTAAAHL 187 L Sbjct: 194 EDKWEEEL 201 >UniRef50_A2CAY4 Possible DNA polymerase III, epsilon subunit n=19 Tax=Cyanobacteria RepID=A2CAY4_PROM3 Length = 321 Score = 94.2 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 53/181 (29%), Gaps = 23/181 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGYYE 62 L+++D ETTGLD +EVG + L + + A IN Sbjct: 91 LLIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLLPVE----TNAAESINRI-P 145 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + R +Q Q L N FD F + Sbjct: 146 AEVTR---LDQPWRQGLDYFQALLDAADLLVAHNAGFDRQW-----------FGKDQLPA 191 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 V L + A ++ + +A GVPV H A+ D A F + Sbjct: 192 VSKPWLCTMEDIAWP-VDRQLRSRPSVRDLALAYGVPVWAAHRALTDCIYLAEVFARCKD 250 Query: 182 T 182 Sbjct: 251 L 251 >UniRef50_A1RGY9 Exonuclease, RNase T and DNA polymerase III n=20 Tax=root RepID=A1RGY9_SHESW Length = 301 Score = 94.2 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 28/192 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNV----DTGESL--YFVPHITVEQLAAADPKAM 55 + ++++D ETTGL D +E+G++ V + V + + Sbjct: 49 ERPMVLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELIT 108 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 E+ G + + + + + A + N FD ++ Sbjct: 109 ELTGITDDMVQGQHIDDSLVASWLSD------DPLVVAHNAQFDRPFFEKRFAALGHLSW 162 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + L E L+ + RLG H A D A A+ Sbjct: 163 ACSASGIDWKAL--------------GFESRKLEYLLLRLG-WFYEGHRAATDCFAMAWL 207 Query: 176 FDMLRHTAAAHL 187 F L + A+L Sbjct: 208 F-HLLPESVANL 218 >UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E98F Length = 488 Score = 94.2 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 21/190 (11%) Query: 1 MAKQ---LIVVDLETTGLDYDTALPVEVGLLNVDT-----GESLYFVPHITVEQLAAADP 52 M++ + D ET G+ P + + D E + I ++ L P Sbjct: 1 MSQPPASFLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYL--PHP 58 Query: 53 KAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFD---------STI 102 +A+ + G + E E + G N FD Sbjct: 59 QAVLVTGITPQMTLAEGEYEYTFMQKIHQAM-IQPNTCVVGYNSIKFDDEVSRFSFFRNF 117 Query: 103 VARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR 162 + + Y S + + A L + L+ + + G+ N Sbjct: 118 MDPYQREYLHGNSRWDLINLVRACYALRPEGIKWPLGDNGLVSFKLERLTQENGISHTNA 177 Query: 163 HSAIGDAAAT 172 H A+ D AT Sbjct: 178 HDALSDVHAT 187 >UniRef50_Q0EWR1 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWR1_9PROT Length = 179 Score = 93.8 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 13/187 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++V+D ETTGL + + +GE++ V+ + +A I+G + Sbjct: 3 DILVLDTETTGLG--DDAEIIEIGIINGSGETVMN---TLVKPTISIPEEATAIHGITDN 57 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A E++ ++G N +D ++ + + + L V Sbjct: 58 DLLNA----PVFADVVEELEGLIQGKILLIYNADYDLRLLRQSARKSKVQIN-LEPAEVR 112 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLG-VPVVN--RHSAIGDAAATAFCFDMLR 180 L + + + + L A R G VP H AI D A + + Sbjct: 113 CVMLEYAKFFGEWNPKYENWKWQSLANAARRTGYVPAEGMLPHRAIADCVAALHVYRHMH 172 Query: 181 HTAAAHL 187 A L Sbjct: 173 PENDAEL 179 >UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellular organisms RepID=Q21WQ6_RHOFD Length = 485 Score = 93.8 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 59/197 (29%), Gaps = 15/197 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEINGY 60 + D ET G + P + + D ++ P + Q A DP+A I G Sbjct: 9 TFLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDPQACLITGI 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM-PFSPLT 118 + + + E Q A + L G G N FD I + P++ Sbjct: 69 TPQLCLEKGIPEYQFAAQIEQAFS-LPGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREW 127 Query: 119 VGRVWHHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSAIGDAA 170 L D+ A L ++ G+ H A+ D Sbjct: 128 QNDCGRWDLLDVVRTAYALRPDGMEWPLNAEGKPSFKLTDLSAANGLLHEAAHDALSDVR 187 Query: 171 ATAFCFDMLRHTAAAHL 187 AT L TA L Sbjct: 188 ATIAL-ARLIKTAQPKL 203 >UniRef50_A7RWU1 Predicted protein n=2 Tax=Nematostella vectensis RepID=A7RWU1_NEMVE Length = 461 Score = 93.4 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 61/197 (30%), Gaps = 24/197 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D ETTGLD + +++ + + + +A +G E Sbjct: 155 TFVMFDTETTGLDTSNDVIIQLACASENGD---PLHSRYMFPGGRSIGSEATNAHGISEA 211 Query: 64 GLYRE---ALTEQQTAVA------WGEVQDWLRGN--------TFAGSNPA-FDSTIVAR 105 + + A E +L+ + FD ++ Sbjct: 212 FIDGSRVLLKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRLLIN 271 Query: 106 QRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDP--TELEGLDAVAER-LGVPVVNR 162 +++ ++ G V + + A + + + E L A+ GVP+ Sbjct: 272 CLKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSPFDSSFKKESLSALHGHLFGVPIDRP 331 Query: 163 HSAIGDAAATAFCFDML 179 H A DA A + + Sbjct: 332 HDAQADACALSKVLMKI 348 >UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphaproteobacteria RepID=Q07NS2_RHOP5 Length = 490 Score = 93.4 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 53/198 (26%), Gaps = 19/198 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYYE 62 + D ETTGL + V + D E+ F + P A+ N Sbjct: 3 FVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEVRSRLLPHVVPHPSALRTNRLSI 62 Query: 63 RGLYREALTE--QQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTV 119 L L + + W + F G N FD ++ P Sbjct: 63 ERLIDGTLPSHYEMVRAIQRTLLAW-SPSIFVGYNSIRFDEEMLRHALFQTLHP--AYLT 119 Query: 120 GRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGDA 169 + R L A + LD +A + H A+ D Sbjct: 120 SNNGNCRADALGLIMAAATLSPACLVVPLGPEGRPIFRLDQLASVNDLKHDQAHDAMADV 179 Query: 170 AATAFCFDMLRHTAAAHL 187 AAT L A L Sbjct: 180 AATLDL-CRLVRERAPEL 196 >UniRef50_Q4D4F6 Exonuclease, putative n=1 Tax=Trypanosoma cruzi RepID=Q4D4F6_TRYCR Length = 316 Score = 93.4 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 51/228 (22%), Gaps = 62/228 (27%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV-DTGESLY------FVPHITVEQLAAADPKAMEIN 58 I VDLETTG V +G + + G +L TV + +A ++ Sbjct: 97 ICVDLETTGFSAQRDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAEAVH 156 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRG------------------------------ 88 G L + +L Sbjct: 157 GLSFEMLRDA----PLLEDVISDFAAFLIQLDGNLPQSGQTEENHRAKPGDLSAKKRCTA 212 Query: 89 ----------NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKL 138 N FD++ + R + + Sbjct: 213 ATTAGCVLTLPPVIAHNANFDASFLQRAVSGAGWRVVWDEYAPLT-----CTQSMFRALY 267 Query: 139 NIDPTELEGLDAVAERLGVPVVNR---HSAIGDAAATAFCFDMLRHTA 183 + + L + GV R H A+ DA F L Sbjct: 268 SHQAAD---LSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRLAEKW 312 >UniRef50_C6MU49 Exonuclease RNase T and DNA polymerase III n=1 Tax=Geobacter sp. M18 RepID=C6MU49_9DELT Length = 314 Score = 93.0 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 27/181 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD----TGESLYFVPHI--TVEQLAAADPKAMEING 59 I +D ETTGL++ +E+G++ + +GE + P+ EI G Sbjct: 57 ICLDTETTGLNHKEDKVIELGIVAFEFDPLSGEIYRISDRYSGFEDPGFPIPPEVREITG 116 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + +A A+ ++ + + N AFD V + + Sbjct: 117 ISDEMVRGQA-----FDDAFVDLLAG-KADLVIAHNAAFDRKFVETRFPAF--------- 161 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA-ATAFCFDM 178 +L + + LD + + G +N H A+ DA + Sbjct: 162 -----KKLPWACTVCQIDWSAERLSSRTLDFLLFKTGSLTINAHRALDDAEGVLGLLLER 216 Query: 179 L 179 L Sbjct: 217 L 217 >UniRef50_B5X4Q1 RNA exonuclease 4 n=1 Tax=Salmo salar RepID=B5X4Q1_SALSA Length = 437 Score = 93.0 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 28/186 (15%) Query: 6 IVVDLETTGLDYDT-ALPVE-VGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G+ D V V L+N V+ ++G Sbjct: 249 VAMDCEMVGVGPDGEDSIVARVSLVNQFGKCIYDKH----VKPTEKVTDYRTAVSGIRPE 304 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + EV + L+G T G D I+ + Sbjct: 305 NIKNG----ENVKTVQKEVAEILQGRTLVGHAIHNDLKIL---------------LLDHP 345 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDMLRH 181 R+ D Y K + + L + L V V HS++ DA AT + M + Sbjct: 346 KKRIRDTQKYKPFKKIV-KSGRPSLKLLCREILNVKVQQGEHSSVQDAQATMRLYTMAKK 404 Query: 182 TAAAHL 187 A + Sbjct: 405 NWEAEI 410 >UniRef50_A1ZEC3 DNA polymerase III alpha subunit n=2 Tax=Bacteroidetes RepID=A1ZEC3_9SPHI Length = 1403 Score = 93.0 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 54/189 (28%), Gaps = 16/189 (8%) Query: 5 LIVVDLETTGLD-----YDTA-----LPVEVGL-LNVDTGESLYFVPHITVEQLAAADPK 53 ++ D ETTGL T V++ L+ G+ + I + Sbjct: 2 YLIFDTETTGLPKDFNAPHTDVDNWPRLVQIAWQLHDYNGKLVSAENMIVKPEGFTIPFN 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQ-DWLRGNTFAGSNPAFDSTIVARQRVTYSM 112 A +++G E L + D R G N FD I+ + V ++ Sbjct: 62 AEKVHGISTEIALEEGLP---LNEVLEKFAVDIARSELIIGHNIGFDVNIMGAEYVRTTV 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPVVNRHSAIGDAAA 171 V + L + + + H A D A Sbjct: 119 DSKLHEVPTYDTKSEETAEYVGIQGGRGGKFKWPTLTELHTKLFSESFDDAHDAAYDVLA 178 Query: 172 TAFCFDMLR 180 TA C+ L Sbjct: 179 TARCYFGLI 187 >UniRef50_C4QBU0 Rex4-related (Xpmc2) n=1 Tax=Schistosoma mansoni RepID=C4QBU0_SCHMA Length = 751 Score = 93.0 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 25/185 (13%) Query: 6 IVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D E G+ ++ V ++N L V +++G R Sbjct: 496 IAMDCEFVGVGFEGKDDALARVSIVNQFGHTLLD----TYVRPEERVVDYRTKVSGIRPR 551 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + EV + ++ G + D ++ Sbjct: 552 DLRKNGSARP-FNDVHKEVAELIKNKILVGHSILKDLKVLRLSHPR-------------- 596 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDMLRH 181 + D + Y + + L A+ ++ LGV V H +I DA AT + ++ Sbjct: 597 -RFIRDTSRYRPFRDLFNGRI-PSLKALTQKVLGVNVQSGEHDSIEDARATMRLYTSVKR 654 Query: 182 TAAAH 186 + Sbjct: 655 VWESS 659 >UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae RepID=Q2P315_XANOM Length = 481 Score = 93.0 bits (230), Expect = 5e-18, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 52/199 (26%), Gaps = 13/199 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEI 57 M + DLET G D + + D + + P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSP 116 + RE +TE + E + T ++ FD V P+ Sbjct: 61 TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIGD 168 G L D+ D L+ +A V + H A+ D Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 180 Query: 169 AAATAFCFDMLRHTAAAHL 187 AT + L Sbjct: 181 VYATIGMARKFQQ-HQPKL 198 >UniRef50_D0KYH5 Ribonuclease T n=2 Tax=Gammaproteobacteria RepID=D0KYH5_HALNC Length = 241 Score = 93.0 bits (230), Expect = 5e-18, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 70/192 (36%), Gaps = 30/192 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD---TGESL---YFVPHITVEQLAAADPKAMEING 59 +VVD+ET GL+ T +E+ + +D G+ + H+ + A +P +M+ING Sbjct: 41 VVVDVETGGLNPQTDALLELAAVLLDVDANGKIIPVDRIQIHVQPFEGANLNPVSMKING 100 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNT---------FAGSNPAFDSTIVARQRVTY 110 +R AL E A A + +R G N AFD ++ Sbjct: 101 IDIDHPFRCALDE---AEALKQFFQPIRQRVKLNGARRAVLVGHNAAFDLAVINAACERT 157 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGD 168 +P H + L + T L E +G+ H A+ D Sbjct: 158 CNKKNPF-------HPFSTFDTVTLSALAVGETV---LAKALEAIGLEWDSQQAHGALYD 207 Query: 169 AAATAFCFDMLR 180 A TA F + Sbjct: 208 AEQTAELFCRII 219 >UniRef50_B8NVL3 RNA exonuclease, putative n=2 Tax=Aspergillus RepID=B8NVL3_ASPFN Length = 368 Score = 93.0 bits (230), Expect = 5e-18, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 48/187 (25%), Gaps = 23/187 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ +D E + V+V ++V +GE + V +G Sbjct: 155 RSVVAIDCEMVPVGPGQNEVVQVCAVDVLSGEIVVDKG---VVPTKPVTDWCTPWSGMTP 211 Query: 63 RGLYREALTEQQ---TAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + L + A EV ++ G D + Q Sbjct: 212 QRLEDMKREGKTVNGWEEARAEVLKFVDGDTILVGHALRNDVRALKMQHAK--------- 262 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVVNR---HSAIGDAAATAF 174 V A A + L + + LG+ + H + D AT Sbjct: 263 ---VLDTATVTKHAVANEMVGSGCKRTWKLKTLCQDFLGINIQQSRNGHDCVEDTLATRE 319 Query: 175 CFDMLRH 181 Sbjct: 320 VLLWCVR 326 >UniRef50_UPI000194CE9E PREDICTED: hypothetical protein n=1 Tax=Taeniopygia guttata RepID=UPI000194CE9E Length = 348 Score = 92.6 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 41/184 (22%), Gaps = 28/184 (15%) Query: 4 QLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G + ++N + + +G Sbjct: 143 KYVAIDCEMVGTGPQGKVSELARCSVVNYEGDVIYDK----YIRPELPIVDYRTRWSGIT 198 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + A E+ L+ G D + Sbjct: 199 KQHMKNAI----PFKAAQAEILKILKDKIVVGHAIHNDFQALKYFH-------PKDRTRD 247 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVN-RHSAIGDAAATAFCFD 177 + + L +A L + V HS++ DA + Sbjct: 248 TSQSPAL------KKRAGLPIRTNVSLKNLARHLLHKNIQVGRKGHSSVEDAQTAMELY- 300 Query: 178 MLRH 181 L Sbjct: 301 RLVE 304 >UniRef50_C1BLC6 Interferon-stimulated 20 kDa exonuclease-like 2 n=1 Tax=Osmerus mordax RepID=C1BLC6_OSMMO Length = 330 Score = 92.6 bits (229), Expect = 6e-18, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 47/180 (26%), Gaps = 27/180 (15%) Query: 4 QLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G + L++ D ++ +G Sbjct: 158 KYVAMDCEMVGTGPKGRNSELARCSLVSYDGDVMYDK----YIKPGNPVTDFRTRWSGIT 213 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A E+ L G G D ++ Y P Sbjct: 214 WSHMAKAI----TFKEAKKEILKILAGKVVIGHAIHNDFKALS-----YGHPAR----MT 260 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNR-HSAIGDAAATAFCFD 177 R+ L K L + + L + R HS++ DA AT + Sbjct: 261 RDTSRIPLLNK----KAGFPEKGCASLKRLTKALFNRDIQTGRRGHSSVEDAKATMELYK 316 >UniRef50_UPI00015B42FE PREDICTED: hypothetical protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B42FE Length = 283 Score = 92.3 bits (228), Expect = 7e-18, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 57/183 (31%), Gaps = 25/183 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ +D E G+ T V + G +Y V+ ++G Sbjct: 117 KVVAMDCEMVGIGDGTDSMVARVSIVNRHGYCVYDK---YVKPTEKVKDYRTAVSGIQPH 173 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L T Q V EV + LRG T G D ++ Sbjct: 174 HLE----TGQDFKVVQKEVAEILRGRTLVGHALHNDLAVL---------------FLSHP 214 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVVNR-HSAIGDAAATAFCFDMLRH 181 D + Y + L +A E LG+ + + H +I DA AT + + R Sbjct: 215 KRFQRDTSRYKVFRKVTKGN-TPSLKKLASELLGLDIQSAEHDSIEDARATMQLYQLFRK 273 Query: 182 TAA 184 Sbjct: 274 KWE 276 >UniRef50_A4RTZ6 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RTZ6_OSTLU Length = 183 Score = 92.3 bits (228), Expect = 7e-18, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 54/186 (29%), Gaps = 11/186 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++ +D E G+ D + V+ ++ H+ ++G + Sbjct: 4 VLALDCEMVGVGADGKRSILARASIVNEDGNVIMDAHVL--PTERVTDYRTAVSGVRAKD 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L ++ + LRG G + D ++ P ++H Sbjct: 62 LTAAN-GAVAFKKVQAQMSELLRGRILVGHSLKNDMRVL-----MLDHPKRDTRDTSLYH 115 Query: 125 HRLADLAAYAAGKLNIDPTELEG-LDAVAE-RLGVPVV-NRHSAIGDAAATAFCFDMLRH 181 L L +A LG+ + HS++ DA AT + Sbjct: 116 PLTRPLRPEERCVPGAPRGRGCRALRDLARQHLGLEIQKGEHSSVDDARATLALYKKFAK 175 Query: 182 TAAAHL 187 + L Sbjct: 176 RWESAL 181 >UniRef50_C0VS85 Putative uncharacterized protein n=3 Tax=Corynebacterium glucuronolyticum RepID=C0VS85_9CORY Length = 2526 Score = 92.3 bits (228), Expect = 7e-18, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 63/180 (35%), Gaps = 17/180 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V++++T+G+ + +E+G++ + + + A I+G ER Sbjct: 2129 FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTLINPRRSFSDSA--IHGISERM 2185 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + ++ + L + F S + R+ ++ L + Sbjct: 2186 ----TVAAPVFEEVADDIAELLDRRILIAHDAPFVSKQLGREFSRSNVKAIHL------N 2235 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 ++ + + LDA G+ + H A+ DA ATA ++L H A Sbjct: 2236 DGYCTMSHSPKLLGSSGRSLSSALDAA----GLKNEHSHCALDDAMATANLLNVLLHKGA 2291 >UniRef50_C5CA98 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CA98_MICLC Length = 381 Score = 92.3 bits (228), Expect = 8e-18, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 46/163 (28%), Gaps = 19/163 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYY 61 +D ET + P VG + V G + + DP+ + I+G Sbjct: 12 DFTAIDFET--ANGFRGSPCAVGAVRVRDGVMVDRAEWLIRPPVGFDRFDPRNVRIHGIT 69 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E + + A + E+ D++ + A N FD ++ L Sbjct: 70 EDRVLDA----PRFAQVYDELADFVGTDVLAAHNAGFDVGVIESGLEVSGRDVPGLEF-- 123 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + + D L + A G H Sbjct: 124 --------VCTLVLARRVYD-LPSYALPSAAREAGFTPGRHHD 157 >UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacteria RepID=B6J811_COXB1 Length = 458 Score = 92.3 bits (228), Expect = 8e-18, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 16/189 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGY 60 K + DLETTGL+ ++ + D E I + P+AM I+ + Sbjct: 6 KTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPDVIPSPEAMIIHRF 65 Query: 61 Y-ERGLYREALTEQQTAVAWGEVQDWLRG--NTFAGSN-PAFDSTIVARQRVT-----YS 111 ++ L +A A E+ + G N FD + Y+ Sbjct: 66 SIDQMLSGKAEI-----EAIREIHQSVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPYT 120 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 + + + LN L+ +++ + H+A+ D A Sbjct: 121 HQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFDLKLENLSKANQLAEGQAHNAMVDVEA 180 Query: 172 TAFCFDMLR 180 + +L Sbjct: 181 SVALAKLLM 189 >UniRef50_D2QID7 Exonuclease RNase T and DNA polymerase III n=2 Tax=Flexibacteraceae RepID=D2QID7_9SPHI Length = 205 Score = 92.3 bits (228), Expect = 8e-18, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 56/204 (27%), Gaps = 27/204 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA--ADPKAMEINGYY 61 +V+DLE TG + D +++G + D V + +I+ Sbjct: 2 PFLVLDLEMTGPEPDYNEIIQIGAVLFDDNWVERGQYLTNVYPENKDAFSSSSEKIHNLS 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDW-------------------LRGNTFAGSNPAFDSTI 102 L E+++W LR G + D Sbjct: 62 LAELEDA----PMIYDVLPEMEEWICTQLGLRVPKGQLDRTPYLRDLIICGQSVINDINF 117 Query: 103 VARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-N 161 + + V + H LA + L A+A G Sbjct: 118 LKEAYRYEKQKWPYSRVL-LDLHTLAYFTFRVLKANGRKVPDRLSLTAIASYFGFAREDG 176 Query: 162 RHSAIGDAAATAFCFDMLRHTAAA 185 H+A+ DA TA C + + Sbjct: 177 FHNALEDAVLTAKCLKEVFKLSEQ 200 >UniRef50_A1VSD3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VSD3_POLNA Length = 550 Score = 91.9 bits (227), Expect = 9e-18, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 18/188 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +++D ETTGL VE+G + + Q P + ++GY Sbjct: 4 QAWVLIDTETTGLTVPI-FVVELGAQRMRGWLPEGSPFRRLLNQNLDIPPASSRVHGYTR 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDS-TIVARQRVTYSMPFSPLTVGR 121 L R+ AV + + + G N +D ++ + + Sbjct: 63 EILERDGEPA---AVVYRDFAAYAGGLPVVAFNLEYDLDEVLLPEWKRLGITPMVTAGF- 118 Query: 122 VWHHRLADLAAYAAGKLNIDPTE--LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM- 178 A + +DP L + + +P H+A+GD A Sbjct: 119 ---------CALRLAQRLLDPVPAGNCKLQTLRQYYRLPERGAHTALGDVETVADLLAKV 169 Query: 179 LRHTAAAH 186 LR A Sbjct: 170 LRPIAEQR 177 >UniRef50_C0VSD3 DNA polymerase III subunit epsilon n=3 Tax=Actinomycetales RepID=C0VSD3_9CORY Length = 310 Score = 91.9 bits (227), Expect = 9e-18, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 23/188 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAAD---PKAMEING 59 ++ + +D ET + VG+ D L + + D P + ++G Sbjct: 2 QEFVSIDFET--ANEQRRSACAVGMARFDAEGKLADTYYTLLHPHPDVDYFNPVNVWVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSP 116 + ++ Q + +V ++ N AFD +++ Y + Sbjct: 60 ITQDDVHDA----PQWSDVADDVALFIGERPIVAHNMAFDGYVLSDLDSLYGAPPLENRR 115 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 R+ LAD + +D ++ H A DA A F Sbjct: 116 FCTVRLARKILAD----KLERKTLDQVFGY-------YFPSEPLDHHHAGFDAQAAGMIF 164 Query: 177 DMLRHTAA 184 ++ Sbjct: 165 ARMQEEFG 172 >UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAP0_SULNB Length = 263 Score = 91.9 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 65/188 (34%), Gaps = 7/188 (3%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M L VD+E+TG+D +++ L V + F + + + I+ Sbjct: 1 MTPTLYFVDVESTGVDLKNDRLIQLAFLKVQGDKIEAFNDLCYTD--IEMNDTVVAIHNI 58 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + + A+ E++ F D ++ + + + Sbjct: 59 TNAMLEDKYWPYET--DAFIELEKGNSPANYFIAHGNELDVAMLEHE--ELILEMQKVDT 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L + +Y L + +A+A+++G+ ++ H A+ DA F+ L Sbjct: 115 DKCARLLLKEAGSYKLEDLITRYKLTQKAEAIAKQIGLSNLDAHDALSDALWHYVLFEEL 174 Query: 180 RHTAAAHL 187 + Sbjct: 175 LERVEGGI 182 >UniRef50_D1ZK43 Whole genome shotgun sequence assembly, scaffold_47 n=1 Tax=Sordaria macrospora RepID=D1ZK43_SORMA Length = 416 Score = 91.9 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 54/179 (30%), Gaps = 28/179 (15%) Query: 4 QLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G ++ L++ + V+ A ++G Sbjct: 223 KYVAIDCEMVGTGPSGLTSVLARCSLVDFHGNQIYDS----YVKPTAFVTDWRTHVSGIS 278 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + + V L+G G + D ++ + Sbjct: 279 KKHMA----FARSFVSVQATVAALLKGRILVGHDVKHDLEVL-------GLEHP------ 321 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDM 178 H + D A Y+ + L +A+ L V + +HS++ DA F Sbjct: 322 --HRDIRDTAKYSGFRK-YGHGPKPSLKVLAKEVLAVEIQSGQHSSVEDARVAMLLFRK 377 >UniRef50_B9J6H2 Bacteriophage 186 Orf81-like protein n=1 Tax=Bacillus cereus Q1 RepID=B9J6H2_BACCQ Length = 288 Score = 91.5 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 24/185 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 I++D ETTGL VE+ +++ L +T + +I+G + Sbjct: 125 DNYIILDTETTGLG-LGHEIVEIAAIDLYGNTLL--NTFVT--PTIPIPADSTKIHGITD 179 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + ++ +G T N AFD ++ +++ L + Sbjct: 180 DMVKDA----PSWEETYMKLLTISQGKTILIYNAAFDIPKISYTCEVHNIAPKKLKSECI 235 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + YA + ++E G + H AI D + + + + Sbjct: 236 -------MELYAEYIDSQYWVP------LSEAAG--TITSHRAINDCKSVLIVLENIWNE 280 Query: 183 AAAHL 187 L Sbjct: 281 IQHTL 285 >UniRef50_Q9FLJ5 Exonuclease-like protein n=3 Tax=Arabidopsis thaliana RepID=Q9FLJ5_ARATH Length = 500 Score = 91.5 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 50/185 (27%), Gaps = 25/185 (13%) Query: 4 QLIVVDLETT-----GLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAM 55 ++ D+ETT G Y +E G + V + + + + + A P+++ Sbjct: 12 EIAFFDVETTIPFRVGQGYA---ILEFGSILVCPKKLVELKNYSVLVRPANLNLITPRSV 68 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPF 114 + NG + A V D L G +AG N FD + Sbjct: 69 KCNGIKREDVESAL----TFADIADTVYDILHGRIWAGHNILKFDCPRIREAFAEIGRDP 124 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + +A G+ H ++ D Sbjct: 125 PEPKGTIDSLAL--------LTQRFGRRAGDMKMATLATYFGLGN-QTHRSLDDVRMNFE 175 Query: 175 CFDML 179 Sbjct: 176 VLKYC 180 >UniRef50_C7X7A5 Exonuclease n=4 Tax=Bacteroidales RepID=C7X7A5_9PORP Length = 192 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 57/190 (30%), Gaps = 20/190 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 +L+ DLETTG+ Y ++ V G + F ++ + +A+ I + Sbjct: 2 KLLFFDLETTGIKYWRNGVHQISGEIVIDGVTKESFNFNVCPHPQCEIEEEALRICNVSK 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGN----------TFAGS-NPAFDSTIVARQRVTYS 111 + + + + L G N +FD+ + V Sbjct: 62 EQIQA----YPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNG 117 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDA 169 + + + K + VA LG+ + + H A D Sbjct: 118 DNYFYSWFWVNSIDVMVLSTQHLMRKR--HEMTDFKQETVARALGIQIDSAKLHDASYDI 175 Query: 170 AATAFCFDML 179 T ++ + Sbjct: 176 QLTKKIYNRI 185 >UniRef50_Q8DQ14 DNA polymerase III, epsilon chain n=57 Tax=Streptococcus RepID=Q8DQ14_STRR6 Length = 208 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 53/185 (28%), Gaps = 18/185 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + I DLE ++V + G + V + G Sbjct: 17 EDYIAFDLEFN-QHEGQTHLIQVSAVRFRDGREID-AYDSYVHTSVPLKSFINGLTGITA 74 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 L E Q+++ G N D I+A + YS + Sbjct: 75 ETLKDA----PPVEKVLEEFQEFVGSLLMIGYNAAKSDLPILAEHGLDYSQQYKVDLYDE 130 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + R +DL A L VA LG H+++ DA TA ++ Sbjct: 131 AFERRSSDLHGIA----------NLKLQTVASFLGF-QGQSHNSLEDARMTARVYESFLE 179 Query: 182 TAAAH 186 + A Sbjct: 180 SDQAR 184 >UniRef50_B0KHB9 Exonuclease RNase T and DNA polymerase III n=3 Tax=root RepID=B0KHB9_PSEPG Length = 203 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 53/200 (26%), Gaps = 23/200 (11%) Query: 1 MAKQLIVVDLETTGL--------DYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAAD 51 M++ + V D ETTG D V++ L L V + Sbjct: 1 MSELICVFDTETTGFPNFKAPSDHPDQPHIVDICALLYTPEGELVDSFEAMVRPDGWSIP 60 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTY 110 + I+G + E A + N +FD I+ + Sbjct: 61 NEVAVIHGITNELALEHGIPEAL---AIEGFLNIWNQAGLRVAHNVSFDDRIMRIALKRF 117 Query: 111 SMPFSPLTVGRVWHHRLA--DLAAYA----AGKLNIDPTELEGLDAVAERL----GVPVV 160 + T + + + V E L G +V Sbjct: 118 QDAWVAETFRDSPKFCTCQSTTSIVKCPPTEKMIAAGRGKQHKPPTVTEALKFFTGEDLV 177 Query: 161 NRHSAIGDAAATAFCFDMLR 180 H A DA A A + L+ Sbjct: 178 GGHRARPDAEACARVYFALQ 197 >UniRef50_C9P6S7 DNA polymerase III epsilon subunit n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P6S7_VIBME Length = 237 Score = 91.1 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 54/181 (29%), Gaps = 17/181 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ET+GL+ + VG++N+ SL H VE + + +N Sbjct: 53 VVLDFETSGLNPRQDEILSVGMINIHYPVMSLATAQHYYVESEHCIEAETAVVNHIVPET 112 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS-MPFSPLTVGRVW 123 L + + L G + + + +P + Sbjct: 113 LLGGISRH----ELIECLVESLSGKVVIAHGAEIEKQFLRQLLSLEDSLPLPLI------ 162 Query: 124 HHRLADLAAYAAGKLNIDP--TELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D + L + E+ G+P H+A D AT F L Sbjct: 163 ---FLDTMRLERSLIKYRGIMYPDLRLAHIREQKGLPPYLAHNAFADVVATGELFLALVE 219 Query: 182 T 182 Sbjct: 220 E 220 >UniRef50_UPI0000E11812 exonuclease, RNase T and DNA polymerase III n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E11812 Length = 236 Score = 91.1 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 53/186 (28%), Gaps = 16/186 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + VD E + LD TA + G + + + + + + I+G Sbjct: 35 WLAVDFEYSSLDVSTAKFMSAGWIEGNHTGIDIQSSYYRLIRAQGDLAQTPIIHGLTPSD 94 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + R + + + + + N D ++ P + Sbjct: 95 IARGVH----VRDMYEHICQFATSHIWVLHNAQLDMGMLKELSKRLQQPLPAI------- 143 Query: 125 HRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D A +L P L ER + H+A+ DA AT + Sbjct: 144 -VCIDTMQLALYQLYKKVDVIPKGGVILSKCRERYELANAPAHNALSDAMATLELWMAQM 202 Query: 181 HTAAAH 186 H+ Sbjct: 203 HSLDPS 208 >UniRef50_A5Z7C9 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7C9_9FIRM Length = 334 Score = 91.1 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 24/189 (12%) Query: 4 QLIVVDLETTGLDYDTA---------LPVEVGLLNVDTGESLYFVPHITVEQLA---AAD 51 IV+DLE + +E+G + V V + Sbjct: 3 DYIVMDLEWN-QNPYGKSHCHTDLTFEIIEIGAVRVSDDRKTIVDSFQQVIKPRVFKKLH 61 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS 111 K EI + E L + +W + + + D T + + Y+ Sbjct: 62 YKIQEITHFTEEELNDGK----DFRKVIRDFLEWCGDDYIFCTWGSMDLTELQKNMKHYN 117 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAA 170 + + DL + + + D L + E L + + H A+ DA Sbjct: 118 LER-----VLDFPLFYVDLQKMFSLRYD-DGHMKRNLTSAVEYLNIQEEHEFHRALSDAY 171 Query: 171 ATAFCFDML 179 TA + Sbjct: 172 YTARILQSM 180 >UniRef50_UPI0001C34DC4 sporulation inhibitor KapD n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34DC4 Length = 347 Score = 91.1 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 21/186 (11%) Query: 5 LIVVDLETT----GLDYDTAL----PVEVGLLNVDTG-ESL-YFVPHITVEQLAAADPKA 54 IV+DLE G + +E+G + +D + F + + K Sbjct: 4 YIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEFSRLVRPQVYRTLHYKI 63 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 E+ L RE Q+ A E DW + + + D T + R V + M Sbjct: 64 SEVTHLTAEQLEREG---QKFETAVKEFFDWCGNDCRFCTWGSMDLTELQRNMVYHGMEL 120 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATA 173 + L L T+ E LD +G+ H A+ DA T Sbjct: 121 P-------FQKPLYYFDLQKIYSLIQGNTKRESLDTAVLEMGIEEERPFHRALDDAWYTG 173 Query: 174 FCFDML 179 + Sbjct: 174 LVMGKM 179 >UniRef50_Q9FLR0 Exonuclease-like protein n=4 Tax=Magnoliophyta RepID=Q9FLR0_ARATH Length = 468 Score = 91.1 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 46/183 (25%), Gaps = 22/183 (12%) Query: 4 QLIVVDLETTGLDYDTAL---PVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEI 57 ++ D+ETT +E G + V + + T+ Q A ++ Sbjct: 8 EIAFFDVETT--VPKRGQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRC 65 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSP 116 NG + + A V D L G +AG N FD + Sbjct: 66 NGIKRDDV----VLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQPPE 121 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + +A G+ H ++ D Sbjct: 122 PKGAIDSLGL--------LTQKFGRRAGDMKMATLARYFGLGN-QTHRSLDDVRMNLEVL 172 Query: 177 DML 179 Sbjct: 173 KYC 175 >UniRef50_A3W6U6 Probable DNA polymerase III (Epsilon chain) protein n=1 Tax=Roseovarius sp. 217 RepID=A3W6U6_9RHOB Length = 193 Score = 91.1 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 28/182 (15%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 VD+E G +E+G++ +D + H P I+G + Sbjct: 6 AVDVE--GNGATPPEIIELGIVEMDGLRLTGRIKHWQFRPELEITPIVSRIHGITNEDVA 63 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 ++ WL G G N + +++ + P + Sbjct: 64 DA----PPFDDVVDDILLWLEGAPIVGHNVRVELEALSKVLPGWK-PAAAYDT------- 111 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--------NRHSAIGDAAATAFCFDM 178 + + E GL+ + + LG+ HSA DAA +A + Sbjct: 112 ------LKVARRLLPYQEKFGLERLGDALGLKDAASKAVGGGAAHSAPYDAAMSAILLER 165 Query: 179 LR 180 L Sbjct: 166 LL 167 >UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2R5F8_ASPNC Length = 298 Score = 90.7 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 38/158 (24%), Gaps = 12/158 (7%) Query: 40 PHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFD 99 + P A+ I G + + E A + + +N FD Sbjct: 134 FYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFD 193 Query: 100 STIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNID----------PTELEGLD 149 + + + R L A L+ Sbjct: 194 DEVTRNIFYRNFYD-PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 252 Query: 150 AVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAAAHL 187 + + G+ N H A+ D AT L T L Sbjct: 253 HLTKANGIEHSNAHDAMADVYATIA-MAKLVKTRQPRL 289 >UniRef50_UPI000169A625 DNA polymerase III, epsilon subunit n=1 Tax=Yersinia pestis FV-1 RepID=UPI000169A625 Length = 143 Score = 90.7 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 9/121 (7%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 I++D ETTG++ Y+ +E+G + V H+ V+ DP+A ++G Sbjct: 9 ILLDTETTGMNKLGVHYEGHRIIEIGTVAVINLPLTGRNFHVYVKPARLVDPEAYGVHGI 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + A E D++RG N AFD + Sbjct: 69 SDEFLADK----PTFADITPEFLDFIRGGELVIHNAAFDIGFKDYEFRMLQQDIPKTETL 124 Query: 121 R 121 Sbjct: 125 C 125 >UniRef50_A3JK24 DNA polymerase III subunit epsilon n=1 Tax=Marinobacter sp. ELB17 RepID=A3JK24_9ALTE Length = 294 Score = 90.7 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 58/180 (32%), Gaps = 27/180 (15%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVD----TGESLYFVPHI--TVEQLAAADPKAMEI 57 ++ ++DLETTGL +E+GL+ V TG+ V + + EI Sbjct: 48 EISILDLETTGLSAANDKIIELGLVKVRVSPSTGQLTEIVSMLDQYEDPGIPIPAVITEI 107 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + + L E A A N +FD ++ + Sbjct: 108 TGITDDMVAGRRLDEGALAQALA------GDGIILAHNSSFDRGFFEKRLPQH------- 154 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 GR W ++ A E L+ + + G H A D A A+ Sbjct: 155 -AGRRWACSFQGVSWRAL------GFESSKLEYLLLKSGY-FYTGHRAEVDCLAVAWLMH 206 >UniRef50_A2C180 Possible DNA polymerase III, epsilon subunit n=2 Tax=Prochlorococcus marinus RepID=A2C180_PROM1 Length = 292 Score = 90.7 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 63/184 (34%), Gaps = 23/184 (12%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLN--VDTGESLYFVPHITVEQLAAADPKAMEING 59 + ++++D ETTGLD + +EVG + V + L + + A +IN Sbjct: 65 PENILILDTETTGLDNENDDCLEVGSILFNVKSRSVLAQQSFLLPVE----INNAEKINN 120 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLT 118 Q + A + +R + N FD + +P Sbjct: 121 IPAEI----TRLPQPLSEAIKYFESLVRVSNVIVAHNAEFD----KKWFGLKKLP----Q 168 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + W + D+ A +L + +A GVPV N H A+ D A F Sbjct: 169 IEKPWICSMDDITWPADRQLK----TRPSVRDLALAYGVPVWNAHRALTDCIYLAEVFIR 224 Query: 179 LRHT 182 Sbjct: 225 CTEL 228 >UniRef50_C8NWG5 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NWG5_9CORY Length = 238 Score = 90.7 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 19/182 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG+ D VE+G++ +D S+ V +++G E Sbjct: 20 YAVIDFETTGMR-DNDAIVEIGVVLLDKDLSVEDTWEALVNPHRLILN--TDVHGIEEDD 76 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + R G + L G T + ++ + + + M + Sbjct: 77 VDRGL----TFPALAGYFKHLLHGRTLVAHDATYEKRYLRYEFERWGMDDTVPDTWIDTM 132 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + K +D +L L + A+ DA+ATA L Sbjct: 133 QLSSRYLGVKKLKEALDVAKLPALKTL------------DALSDASATANLLRHLHEEHD 180 Query: 185 AH 186 A Sbjct: 181 AS 182 >UniRef50_C6DYG6 Exonuclease RNase T and DNA polymerase III n=3 Tax=Geobacter RepID=C6DYG6_GEOSM Length = 312 Score = 90.7 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 27/181 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV----DTGESLYFVPHI--TVEQLAAADPKAMEING 59 + +D ETTGLDY +E+G++ +TGE + + EI G Sbjct: 55 LCLDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGVPIPEEVKEITG 114 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + +A + E + + N AFD V + ++ Sbjct: 115 ISDDMVRGQAFDDP-FINLLAE-----KSHLVIAHNAAFDRKFVEARFPAFT-------- 160 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA-ATAFCFDM 178 +L + + L+ + + +N H A+ DA + Sbjct: 161 ------KLPWACTVSQIDWGAERVSSRTLEYLLFKTASLTINAHRALDDAEGVLGLLLER 214 Query: 179 L 179 L Sbjct: 215 L 215 >UniRef50_A0R7K3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7K3_PELPD Length = 304 Score = 90.7 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 28/171 (16%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV----DTGES--LYFVPHITVEQLAAADPKAMEING 59 + +D ETTG ++ + +E+G++ TGE + + DP+ + G Sbjct: 48 LCIDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRIVDTYSGFEDPCRPLDPEVTAVTG 107 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLT 118 + L ++L + + + N FD + + R+ + +PF+ Sbjct: 108 ITDDMLAGQSLDDAAVGKIVSQ------ASLCFCHNCKFDRSFLERRFPEFEKLPFACTM 161 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 W + L L+ + + G ++ H A+ DA Sbjct: 162 SQIDWKNELVT---------------SRTLEYLLYKCGACFIDAHRALNDA 197 >UniRef50_C1YH96 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=2 Tax=Actinomycetales RepID=C1YH96_NOCDA Length = 233 Score = 90.7 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 45/164 (27%), Gaps = 14/164 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + D E+TGLD V L +D V ++ +A +I+ Sbjct: 5 TRPMAAFDTESTGLDLANDRIVTAALWRIDPAARTKEVTTWLIDPGIDIPQEATDIHHIT 64 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGN-----TFAGSNPAFDSTIVARQRVTYSMPFSP 116 A A E+ L N +D +++ + + Sbjct: 65 TEHAREHGRPA---AEAVPEIGAALEKAAADGVPVVVYNAPYDLGLLSAELRRHDAGARF 121 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV 160 RV + D + + L V GV + Sbjct: 122 DGTLRVLDPLVID------KRFDTFRRGSRKLVDVCAHHGVRLD 159 >UniRef50_B9KC73 Putative uncharacterized protein n=1 Tax=Campylobacter lari RM2100 RepID=B9KC73_CAMLR Length = 459 Score = 90.3 bits (223), Expect = 3e-17, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 67/189 (35%), Gaps = 16/189 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +IV+D ETTGL +++ +++ L F + + + +A +I+G Sbjct: 151 VIVIDTETTGLREWEDEILQLSIIDETG--YLIFDKYFKPKYKSTWI-EAQKIHGIKPAF 207 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + +A + + ++ + + G N FD + R P + V +++ Sbjct: 208 VQNKA-SIDNYKIQLEKIFN--DADVIIGYNLDFDLKFIKRVIDFEK-PMFCIDVMKLFT 263 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLG-------VPVVNRHSAIGDAAATAFCFD 177 + ++ + L A + H A+ DA AT + Sbjct: 264 SYYHEESSILPNVDCGYSYK--KLTFAAWHFKNPNALNPLNFHGAHGALEDARATLYVLT 321 Query: 178 MLRHTAAAH 186 L T ++ Sbjct: 322 KLEQTLSST 330 >UniRef50_Q31EW8 Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31EW8_THICR Length = 293 Score = 90.3 bits (223), Expect = 3e-17, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 26/179 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG------ESLYFVPHITVEQLAAADPKAMEI 57 ++ ++D ETTGLD +E+G V+ + L + E + ++ Sbjct: 42 KVCIIDTETTGLDTRVCEIIELGYQIVEFDSQGNFYQILTAKNFLN-EPEGEISAEVTQV 100 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + + + D N AFD +V R S Sbjct: 101 TGLTLDDVKGHQIPWAEVEA------DMADVQLCVAHNAAFDRPVVERY--------SDC 146 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + +VW + + K+ + + ++G H A+ D A Sbjct: 147 FIDKVWGCSAVQVDWFHLAKV-----GSRSQEFLCWKVGQFFYGAHRALDDVQALTHLL 200 >UniRef50_Q28W63 Exonuclease n=5 Tax=Rhodobacterales RepID=Q28W63_JANSC Length = 196 Score = 90.3 bits (223), Expect = 3e-17, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 16/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I VD+ET + ++GL V + +SL V ++ + P +++G Sbjct: 16 RFIAVDVET--ANNAQGSICQIGLCCVGSDDSLNTVS-TLIDPEQSFSPFNTDLHGISAE 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A+ + L + + FD Y +P V Sbjct: 73 TVNGA----PTFPQAYASLYPVLNAHRLVQHS-RFDEAAFTAACARYDVPM-------VT 120 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 H + + GL ++ + LG+ + H A DA A+A Sbjct: 121 SHWTDSVKIARQAWPELKGAGGHGLASLKKALGLSF-HHHDAGEDARASATVILR 174 >UniRef50_D2EFA4 Exonuclease RNase T and DNA polymerase III n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFA4_9EURY Length = 199 Score = 89.9 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 22/188 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +IVVD+ET+G + +G ++ E F +E+ +A+ +NG+ + Sbjct: 1 MIVVDIETSGTSPYNHSILSIGAVDFSNPERQ-FYQECQIEKDKEYTEEALNVNGFKKEE 59 Query: 65 LYREALTEQQTAVAWGEVQDWL---RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L ++ E W+ + T G N FD+ + Y++ FS Sbjct: 60 LTD--PKKKTLESVLNEFIVWIQPVKDKTIGGHNVNFDANFLNYSFKKYNINFS------ 111 Query: 122 VWHHRLADLAAYA----AGKLNIDPTELEGL----DAVAERLGVPVVN-RHSAIGDAAAT 172 + HR+ D + + PT+ E D V G+P H+A+ A Sbjct: 112 -FGHRVIDTHSLVYASLLSRHIDPPTKNEKTDINSDYVFNYAGLPPEPKPHNALNGAKME 170 Query: 173 AFCFDMLR 180 A L Sbjct: 171 AEALSRLI 178 >UniRef50_C2CUZ9 DNA polymerase III subunit epsilon n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CUZ9_GARVA Length = 256 Score = 89.9 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 54/191 (28%), Gaps = 8/191 (4%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV--PHITVEQLAAADPKAMEINGYYE 62 L+ D ETTG L+ + + + +PKA ++NG+ + Sbjct: 29 LLGFDTETTGAILGEDSICSATLVLRNPQNKTHNDVIATWLINPHKPINPKASQVNGFTD 88 Query: 63 RGL-YREALTEQQTAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQRVTYSMP-FSPLTV 119 L + V + N FD ++ + + + Sbjct: 89 EFLQENGGEPTAEIEALAAAVSLAQSKNIPLLAYNAPFDVEMLRHDLKKWDLTSLNNRPN 148 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDM 178 + + + + T L + GV P+ + H A D A Sbjct: 149 STINDGEILVVDPLVIDRAVSKRTGKRTLTHTTQFYGVEPIGDFHDATADTVAAVDLIKP 208 Query: 179 LRHTAA--AHL 187 + A+L Sbjct: 209 ISELHEDVANL 219 >UniRef50_UPI0001AEF4FD exonuclease RNase T and DNA polymerase III n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AEF4FD Length = 204 Score = 89.9 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 73/198 (36%), Gaps = 28/198 (14%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L VD ETTGLD E+ ++ GE+ L ADPKA+EIN Y Sbjct: 9 QSPPLAFVDTETTGLDPFQHDAWEIAVILRKPGETDQESVFYLEPDLINADPKALEINRY 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + E T + ++ L G GSNP FD+ ++A Y P Sbjct: 69 -HERVKTEDWTWGKPQDVARDLYRLLDGTVLIGSNPPFDADMIANIFGRYYWHPKP---- 123 Query: 121 RVWHHRLADLAAYAAGKL-----------------NIDPTELEGLDAVAERLGVPV---V 160 WH+R D+A AAG + ++ +GV Sbjct: 124 --WHYRTIDIAILAAGYRHGQAASGAYGGDFLFPDDYPQLP-YSSYGLSRAVGVEPPAKD 180 Query: 161 NRHSAIGDAAATAFCFDM 178 H+A+GDA FD Sbjct: 181 VAHTALGDARWARDVFDA 198 >UniRef50_A9CEN2 Polymerase epsilon subunit n=5 Tax=cellular organisms RepID=A9CEN2_AGRT5 Length = 326 Score = 89.9 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 60/188 (31%), Gaps = 30/188 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV---DTGESLYFVPHI--TVEQLAAADPKAMEINGY 60 +++D ETTGLD+ T +E+G++ D G + A + G Sbjct: 74 VILDTETTGLDHRTDEIIEIGVITFTFDDQGAIGDVTGIYGGLRQPGVAIPEDITRLTGI 133 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + +++ + + N FD FSP+ Sbjct: 134 TDEMVAGQSID-------MMRLTSLIAHADLIIAHNAGFDRPFCEA--------FSPIFR 178 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + W ++++ + E L + + G H A+ D A + Sbjct: 179 DKAWACSVSEID------WRVRGFEGNKLGYLIGQSGYFHDG-HRAVDDCFALLEVLE-- 229 Query: 180 RHTAAAHL 187 + + ++ Sbjct: 230 QRRSGQNI 237 >UniRef50_C9YB77 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB77_9BURK Length = 307 Score = 89.9 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 27/174 (15%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVD----TGESLYFVPHI--TVEQLAAADPKAME 56 K ++V+D ETTGLD +E+ LL VD TG + V + A P+ + Sbjct: 37 KTILVLDTETTGLDQAKEKIIELALLRVDIDTATGLPVGPVQVYDGLEDPGKAIPPEVVA 96 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 I G + + +AL E + A + N FD V + P Sbjct: 97 ITGIQDADVQGQALDEARVAELMQ------GVDVVIAHNAGFDRPFVESRL--------P 142 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 W ADL + G+ L+++A+ LG+ + H A D Sbjct: 143 AFAALPWACSFADLDWKSLGR------SSAKLESLAQELGL-FYDAHRAEMDCH 189 >UniRef50_A7ILL5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7ILL5_XANP2 Length = 200 Score = 89.9 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 22/200 (11%), Positives = 51/200 (25%), Gaps = 20/200 (10%) Query: 5 LIVVDLETTGL--------DYDTALPVEVGLLNVDTGESLYFVPHITVEQLA----AADP 52 ++ D ETTG V++ + ++ Sbjct: 2 ILFWDTETTGFFDDRLPVDHKAQPYIVQLAAQLCEDDGRPIAGFSFIIDPGIGDGINIPE 61 Query: 53 KAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-- 110 +A ++G + ++ + A+ + R + N FD + + Sbjct: 62 RAAAVHGITNERAVQFGVSTEFALSAFTHLYQ--RADMVCAHNAKFDKGVTETAISRHYG 119 Query: 111 ---SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAI 166 + + + + L+ G + H A+ Sbjct: 120 RVMPLRKPVFCTMESATPIINLPPTDRMRAAGFNKPKPPKLEECIRHFFGEDLDGAHDAM 179 Query: 167 GDAAATAFCFDMLRHTAAAH 186 D AA + L+ A + Sbjct: 180 VDVAACRRVYFHLKSMEADN 199 >UniRef50_B5MA46 Putative DNA polymerase III, epsilon subunit n=5 Tax=unclassified Myoviridae RepID=B5MA46_9CAUD Length = 184 Score = 89.9 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 48/183 (26%), Gaps = 21/183 (11%) Query: 5 LIVVDLETTGLDY-------DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 V D ETTGL + +E + D + L V I + +I Sbjct: 3 FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGEKILDEVEFIC-NPGIVIEEIITKI 61 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSP 116 G L + +V+D+ N FD ++ Sbjct: 62 TGLKNEDL----IKHPSFLDQRQKVRDFFSRADANIAHNLPFDKFMLTCDLARGKFGLDE 117 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + + + A L + E P V +H A+ D Sbjct: 118 VNFPSLDICTVEESAPLF--------GHRMRLQHLYEHYCGPYVQKHRALDDVRLLHEVC 169 Query: 177 DML 179 + Sbjct: 170 KRM 172 >UniRef50_Q0SR27 Exonuclease family protein n=9 Tax=Clostridium perfringens RepID=Q0SR27_CLOPS Length = 300 Score = 89.9 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 35/198 (17%) Query: 5 LIVVDLET------TGLDYD-------------TALPVEVGLLNVDT--GESLYFVPHIT 43 +++DLE T + +E+G + ++ E F +I Sbjct: 3 YVIIDLEFNNMQNITKFYPNIYNEQKDLKELDSYNEIIEIGAIKLNKFMQEVDEFKTYIK 62 Query: 44 VEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV 103 +PK ++I G E L A ++D++ + S D + Sbjct: 63 PSVFKVLNPKIIDITGITEDHLKDGIK----FEDAMDNLKDFIGEDDILCSWATDDIVHI 118 Query: 104 ARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR- 162 +S W + D+ Y + + L E L + + Sbjct: 119 VNNAKYHSYKNIS------WIKKYIDIQKY--CTKILAHKKSLSLKHALEELKIKIDKSK 170 Query: 163 -HSAIGDAAATAFCFDML 179 H A+ DA TA F L Sbjct: 171 LHDALNDAVYTAEVFKRL 188 >UniRef50_Q934V3 Putative uncharacterized protein HCM2.0114c n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=Q934V3_SALTI Length = 185 Score = 89.6 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 20/190 (10%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEIN 58 M + VD+E+TGLD+ +E+ + + + + DPKA ++ Sbjct: 1 MTTIVGGVDIESTGLDFTSGHKIIEIAITRYELETQKHIDSLEMRFNPRRSIDPKAQAVH 60 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPA-FDSTIVARQRVTYSMPFSP 116 G L TE A G++ ++ + N FD + + +Y + Sbjct: 61 GISLEDLA----TEPLLADHAGKIAAYMGACSALVAHNGEAFDLPFIRHEFGSYGVKLPD 116 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAF 174 + + + G + + L+ +A LG HSA+ D Sbjct: 117 ----------IPLVDSMLDGLWATEDGKRPRLEELAFSLGFTYDREKAHSALYDTDLMMQ 166 Query: 175 CFDMLRHTAA 184 CF R Sbjct: 167 CFFKAREKYG 176 >UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF4745 Length = 1746 Score = 89.6 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 27/182 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A ++ V+D+ETTGLD E+ L+ + + + + A ++ Sbjct: 101 ADRIAVLDIETTGLDSAADFVCELALVGL--DGTPLANIMVQLPAGVARPNESF------ 152 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNP-AFDSTIVARQRVTYSMPFSPLTV 119 E A ++ L G N FD + + + L Sbjct: 153 --------GAEFPLDDALRLLEAHLAEIDLVIGHNLLEFDRPFLEKAAQRAGVDPPHLPS 204 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + L L + + + H A+ DA ATA + Sbjct: 205 ---------CVDSLHLATLVDVAMPNRSLADLTHQFNIVHQEPHRALADATATAGVVRAM 255 Query: 180 RH 181 Sbjct: 256 LD 257 >UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NSM4_9RHOB Length = 469 Score = 89.6 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 53/194 (27%), Gaps = 14/194 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGYYE 62 DLET+G P++ + D E + P A+ + G Sbjct: 2 FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEVERIDIRCRLSPHILPAPWALAVTGVSP 61 Query: 63 RGLYR-EALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 L + + + + T+ G N AFD ++ + P LT Sbjct: 62 GMLSNPNLPSAFEFSQEVSSLIHRWGPATWTGYNNIAFDEQMLRQMFYQNLHPNLYLTQM 121 Query: 121 R-----VWHHRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 + A L LD +A G N H A+ D A Sbjct: 122 DGNDRMDIMKLVYATWVLANDALTWPTDEAGKITFKLDQLAPANGFVSNNFHDALADVEA 181 Query: 172 TAFCFDMLRHTAAA 185 T L A Sbjct: 182 TINI-AKLIRDRAP 194 >UniRef50_Q6BIK6 RNA exonuclease 4 n=4 Tax=Saccharomycetaceae RepID=REXO4_DEBHA Length = 272 Score = 89.6 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 53/188 (28%), Gaps = 28/188 (14%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G+ + V ++N F + + ++G Sbjct: 98 KYLAMDCEFVGVGPEGTESALARVSIVNFYGHTV--FDKFVKPRE--RVTDWRTWVSGVT 153 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A E L G G D + Sbjct: 154 PKHMNEAI----SFQEAQNETSKLLEGRILVGHAIHHDLDAL---------------FLS 194 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVN-RHSAIGDAAATAFCFDML 179 R+ D + Y + +I + L ++ + + HS++ DA AT F + Sbjct: 195 HPKSRIRDTSQYKPFR-SISMGKTPSLKKLSSHFLKIDIQGSAHSSVEDARATMLLFRLH 253 Query: 180 RHTAAAHL 187 R + Sbjct: 254 RKEFEQSI 261 >UniRef50_Q8QNF3 EsV-1-126 n=1 Tax=Ectocarpus siliculosus virus 1 RepID=Q8QNF3_ESV1 Length = 206 Score = 89.6 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 19/193 (9%) Query: 6 IVVDLETTGLDYDT-----------ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-K 53 + D+ETTGL V + + + +++Y + + A + Sbjct: 4 LFFDVETTGLPPRKANPETFEQYDSCRVVSIAWV-LRDEKTVYSQRYSVTDPGIADENIG 62 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQ-DWLRGNTFAGSNPAFDSTIVARQRVTYSM 112 A ++G + R V + D R + N FD ++V+ + Sbjct: 63 AEFVHGISREVMDRYGNAT---KVVLSDFMADVDRSDKIVAHNLDFDRSVVSAELFRMGS 119 Query: 113 PFSPLTVGRV-WHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGDAA 170 + + + + L+ + E G N H A+ D Sbjct: 120 SDDARRLMSFKSLCTMKSTTNLVRIPNSYGSYKWPKLEELHEFLFGHVFENAHHAMCDVD 179 Query: 171 ATAFCFDMLRHTA 183 A C+ L Sbjct: 180 AMVKCYFTLLEKH 192 >UniRef50_D1B1G8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B1G8_SULD5 Length = 292 Score = 89.6 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 66/182 (36%), Gaps = 7/182 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++I++D ETTG+ Y+ ++ L ++ + + + + +AM ++ Sbjct: 2 KIILLDTETTGI-YEKDRICQLAFLVLNEELEVEEIHNDLCQPPVMISYEAMAVHHITPE 60 Query: 64 GLYREALTEQQTAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E Q A+ + + N N +FD T++ ++ + + + R+ Sbjct: 61 RVAHEVSCIQT--RAYQRLLELNTPYNLLVIHNASFDLTMLEKE--GFVSQMNLVDTFRI 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + +++ ++ V + H A+GD F+ L Sbjct: 117 LRAYYPNEGSFSLQYKRYQWGLYHQEATFQKKHTVSIE-AHDALGDVVVLKHLFEKLCEE 175 Query: 183 AA 184 + Sbjct: 176 HS 177 >UniRef50_A9M0U8 DNA polymerase III, epsilon subunit n=9 Tax=Neisseria RepID=A9M0U8_NEIM0 Length = 187 Score = 89.2 bits (220), Expect = 6e-17, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 12/128 (9%) Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 ++G L + A ++ D+LRG N FD + + +P Sbjct: 1 MHGLTIEVLEGK--NAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLP--- 55 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAF 174 + D A A P + LDA+ R V R H A+ D Sbjct: 56 --TVEELGCTVTDTLAMAREMF---PGQKASLDALCNRFSVDRSKRVLHGALIDCELLGE 110 Query: 175 CFDMLRHT 182 + + Sbjct: 111 VYLAMTRR 118 >UniRef50_UPI000044938D PREDICTED: hypothetical protein n=2 Tax=Gallus gallus RepID=UPI000044938D Length = 441 Score = 89.2 bits (220), Expect = 6e-17, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 28/186 (15%) Query: 6 IVVDLETTGLDYDT-ALPVE-VGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G+ V V ++N+ V+ ++G Sbjct: 268 VAMDCEMVGVGPSGEDSIVARVSIVNLFGKCIYDK----YVKPTEEVTDYRTAVSGIRPE 323 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L T + EV D L G G D ++ Sbjct: 324 HLK----TGEDFKTVQKEVADILNGRILVGHALHNDLKVL---------------FLDHP 364 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNR-HSAIGDAAATAFCFDMLRH 181 ++ D Y + + L + +RL V V H +I DA A + + + Sbjct: 365 KKKIRDTQKYKPFRQRVKNA-RPSLKLLCDRLLDVQVQTSEHCSIQDAQAAMRLYTLEKK 423 Query: 182 TAAAHL 187 A L Sbjct: 424 EWEAAL 429 >UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsilonproteobacteria RepID=A8EU91_ARCB4 Length = 247 Score = 89.2 bits (220), Expect = 6e-17, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 14/182 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D ETTG ++ G + VD G+ F + +AME++ Sbjct: 4 YVLFDTETTGA-AQEDRVIQFGAMIVDNKGKVEAFDELCSAPIPIKL--EAMEVHNITPD 60 Query: 64 GLYREALTEQQ-TAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + E+ N N FD ++ ++ + + R Sbjct: 61 LLENKPKAVETNFYKRLEELNS--DENYLIAHNINFDLDMIKKEGFEN--SYKLIDTLRC 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLD-AVAERLGVPVVNRHSAIGDAAATAFCFD-MLR 180 H +DL + L +L + A + G+ + H AIGD F L Sbjct: 117 AKHLFSDLPYHRLQYL-RYALDLYKFEENEASKYGITIK-AHDAIGDVLV-MKLFLSKLV 173 Query: 181 HT 182 Sbjct: 174 GK 175 >UniRef50_C7Z8F6 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z8F6_NECH7 Length = 320 Score = 89.2 bits (220), Expect = 6e-17, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 49/178 (27%), Gaps = 26/178 (14%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E G+ V +++ + V+ ++G Sbjct: 133 KYIAIDCEMVGVGPGGYESALARVSIVDFHGRQVYDS----YVKPKEKVTNWRTAVSGIS 188 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ L+ G + D + + Sbjct: 189 P----KSMRFARDFEEVQADIDKLLKDRILIGHDLKHDLEAL---------------ILS 229 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGDAAATAFCFDM 178 + D A + K + + + LGV + HS+I DA AT F Sbjct: 230 HPARDIRDTAKFPGFKKYGNGRKPALRLLAQQLLGVEIQEGAHSSIEDARATMLLFRK 287 >UniRef50_B9RLV7 Exonuclease, putative n=1 Tax=Ricinus communis RepID=B9RLV7_RICCO Length = 448 Score = 89.2 bits (220), Expect = 7e-17, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 51/184 (27%), Gaps = 20/184 (10%) Query: 1 MAKQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAA-----ADPKA 54 ++ DLETT + +E G + V + + T Q AA Sbjct: 10 QRSEIAFFDLETTLPGECEGFAILEFGAILVCPRTLVELHTYATFVQPAADPSLIFSSSF 69 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMP 113 + NG Y ++ + V + L G +AG N FDS + Sbjct: 70 LRSNGIT----YDNIVSAPTFSDIADTVYEILNGRLWAGHNVQKFDSVKIREAFAEIGRQ 125 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + D K + ++A G+ H ++ D Sbjct: 126 PPVPKG-------VIDTWELLTHKFGR-RAGDMKMASLATYFGLG-KQTHRSLDDVRMNV 176 Query: 174 FCFD 177 Sbjct: 177 DVLK 180 >UniRef50_A2BVT4 Possible DNA polymerase III, epsilon subunit n=8 Tax=Prochlorococcus marinus RepID=A2BVT4_PROM5 Length = 270 Score = 89.2 bits (220), Expect = 7e-17, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 23/180 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLL--NVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 ++++++D ETTGLD + +E+G + +V + L V + + +A +NG Sbjct: 47 EKILILDTETTGLDENKDEIIEIGCILFHVTSKSVLSQVSFLFPV----SSNEAEHVNGI 102 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + +Q + N FD + +P + Sbjct: 103 SAEV----SNIKQPWEEGLNFFLKLVDCADLIVAHNVEFD----KKWFGKGRLPN----L 150 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + W L D+ L + +A +PV + H A+ D + F Sbjct: 151 EKNWICSLEDINWSFQKNLKN----RPSVTDLALSFSIPVWSLHRALSDCFYISEVFKKC 206 >UniRef50_C7NAB6 Exonuclease RNase T and DNA polymerase III n=4 Tax=Fusobacteriaceae RepID=C7NAB6_LEPBD Length = 212 Score = 89.2 bits (220), Expect = 7e-17, Method: Composition-based stats. Identities = 23/209 (11%), Positives = 51/209 (24%), Gaps = 38/209 (18%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTG------------ESLYFVPHITVEQLAA 49 K +I D+ET G + + + + V+ + F + Sbjct: 8 NKNIIFFDVETNGF--QGSSVLSMSAIKVNYNSENTGEEKNKWKKVSEFNRFYFRNEGEE 65 Query: 50 ADPKAMEINGYYER--------GLYREALTEQ-QTAVAWGEVQDWLRG-NTFAGSNPAFD 99 + A+ +NG + + + + + + F N FD Sbjct: 66 LNEGAVSVNGLTDDVILSERKSIIQNTGIEYPLTFKEDMDNFFLFCQDTSHFVAHNIKFD 125 Query: 100 STIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV 159 + V + L ++ + + L A +P Sbjct: 126 RSFVDFPLQ------NQFDTM------LTNIDIVKVNGSSYGNYKWPKLMECANYYNIPF 173 Query: 160 VNR--HSAIGDAAATAFCFDMLRHTAAAH 186 H + D F + + Sbjct: 174 EESQLHGSYYDVLIMFRIFFKMMKHKTGN 202 >UniRef50_A3KH10 Interferon stimulated exonuclease gene 20-like 2 n=2 Tax=Danio rerio RepID=A3KH10_DANRE Length = 321 Score = 88.8 bits (219), Expect = 8e-17, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 49/190 (25%), Gaps = 27/190 (14%) Query: 4 QLIVVDLETTGLDYDTA--LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G A +++ D + + ++ +G Sbjct: 135 KYLALDCEMVGTGPKGAQSELARCSIVSYDGD--VVYDKYVKPINP--VTDYRTRWSGIR 190 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L A E+ + G G D + F R Sbjct: 191 RQDLLHAT----PFYHAQKEIVKIITGKVVVGHAIHNDFKALKYFHP----AFQTRDTSR 242 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPV---VNRHSAIGDAAATAFCFD 177 + K + L + + L + HS++ DA AT + Sbjct: 243 I---------PLLNEKAGFPEKQCVSLKKLTQAILKRDIQTGYRGHSSVEDAKATMELYK 293 Query: 178 MLRHTAAAHL 187 ++ L Sbjct: 294 VVERMWEQKL 303 >UniRef50_C7JDE1 DNA polymerase III exonuclease epsilon subunit like protein n=8 Tax=Acetobacter pasteurianus RepID=C7JDE1_ACEP3 Length = 343 Score = 88.8 bits (219), Expect = 9e-17, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 52/180 (28%), Gaps = 31/180 (17%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP------HITVEQLAAADPKAMEING 59 + VD+ETTGL D V + ++ + +S + + + P A I+G Sbjct: 134 LFVDVETTGLHSD-DQIVSICMILLYADKSQELQKLTYKSLYYIFDPCKKSHPIAEGIHG 192 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLT 118 Y + L + L + ++ + N FD + + + Sbjct: 193 YNDWTLRHQNL----FEEKMEHILSFIEESDVIVAHNVNFDMKFIRNSFANAKIDIGKIG 248 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFD 177 L A ++RLG+ H A D + Sbjct: 249 TMCTM------------------EMHGGSLSACSKRLGIQRKTSIHDAAEDVLMCMCLYL 290 >UniRef50_A8SRC5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SRC5_9FIRM Length = 227 Score = 88.8 bits (219), Expect = 9e-17, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 21/185 (11%) Query: 4 QLIVVDLETTGLDYD--------TALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPK 53 + + VD E +D + + +E+G + +D E F ++ + Sbjct: 10 RYVFVDFEMNLIDSEHKQEKKICKSEIIEIGAVKLDDEYNEIDSFKSYVKPAYG-NMASR 68 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 +++ G + L T A G +W + D + + Sbjct: 69 IIKLTGITDEMLE----TAPSYEDAVGRFIEWCADADVIYAWSENDLRQLRGETRLKQYT 124 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAAT 172 L I + L LG H A+ DA T Sbjct: 125 HPELERVFAKWQDFQ-----KEYARMIGTSRRISLSDAVFYLGENFQGAEHDALWDARNT 179 Query: 173 AFCFD 177 A F Sbjct: 180 AEVFK 184 >UniRef50_Q2S4M8 Exonuclease, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S4M8_SALRD Length = 236 Score = 88.4 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTG +E+G++ + H V LA A ++G + L Sbjct: 67 VFLDTETTGSGP-QDAVIELGVVAAQGEVLI----HTLVAPLAPVTRGARRVHGITDEEL 121 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAG-SNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + L P +D ++ T ++ P T R+ Sbjct: 122 ADA----PPFPTVADRLDTVLADAECVWTFGPTYDRRML---LQTAALAECPETHRRIQD 174 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAFCF 176 DL A + E L A+RL V + + H A+ DA + Sbjct: 175 STWRDLQPDAT--RVLGDAERVALTDAAKRLDVSIPTEGHHHRALYDAKLARRVW 227 >UniRef50_A0B4X4 Exonuclease, RNase T and DNA polymerase III n=2 Tax=Burkholderia RepID=A0B4X4_BURCH Length = 293 Score = 88.4 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 56/173 (32%), Gaps = 22/173 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTGLD+ A VE+ +L+ + V+ A EI+G + + Sbjct: 130 LFIDTETTGLDH-QAAIVEIAILDRAGAVLID----TLVKPAMPIPAAATEIHGITDADV 184 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 +V + L G N AFD ++ + ++ + L Sbjct: 185 AGA----PAWNTIGPQVAELLAGRLLIAHNGAFDERLLYQTSRSHGVTLPAL-------- 232 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFD 177 R+ LN L A LG RH A DA Sbjct: 233 RVECTMEL----LNGWAGRWLSLADAALMLGAGTFAARHRACADAEQCRQIVL 281 >UniRef50_Q06GG8 Putative exonuclease n=2 Tax=Rhodococcus RepID=Q06GG8_9NOCA Length = 238 Score = 88.4 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 36/184 (19%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +VD+ET+GLD +E+ +++ TGE L + +P A+E++G L Sbjct: 52 CIVDVETSGLD---GSIIEIAVIDAATGEVLLNT--LVDCSPVEIEPGAVEVHGLTATDL 106 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + E+ + N FD V + + L W Sbjct: 107 AGA----PRWSEVFPELAAATKNRVVLAYNAKFDRGRVLHDCRREGIDPAHLAEPARWQC 162 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR------HSAIGDAAATAFCFDML 179 +A E LG+ + R H A+ D AT ML Sbjct: 163 VMARR---------------------CEALGLGLDGRLRLGGGHRALADVRATRVVLRML 201 Query: 180 RHTA 183 Sbjct: 202 ADGR 205 >UniRef50_D2RA75 Exonuclease n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RA75_GARVA Length = 259 Score = 88.4 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 9/190 (4%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYYE 62 L+ D ETTG + V L+ + + V + +PKA E+NG+ + Sbjct: 29 LLGFDTETTGANIGKDAIVSATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTD 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNT--FAGSNPAFDSTIVARQRVTYSM----PFSP 116 L ++ + N FD ++ + + + Sbjct: 89 EYLKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWHLTALEERAT 148 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFC 175 + + + + + + + L ++ GV P+ + H A D A Sbjct: 149 CPIHALNANDILTVDPLVIDRAVSRRSGKRTLTITSQFYGVEPIGDFHDATADTVAALDL 208 Query: 176 FDMLRHTAAA 185 + + Sbjct: 209 IAPMSKLYES 218 >UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9D3J4_9RHOB Length = 240 Score = 88.4 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 50/193 (25%), Gaps = 36/193 (18%) Query: 7 VVDLETTGLDY-DTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG + A +E G ++VD + + P M ++ + Sbjct: 11 VIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKPSEPIPPVTMAVHHITDTD 70 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAG-SNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + W D R + N F+ Sbjct: 71 VADA----PPPGQVWQPFWDGCRSEDYVAAHNAKFEQYF-------------------HD 107 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV----------VNRHSAIGDAAATA 173 + + Y + + G A+ LG+ H A+ DA TA Sbjct: 108 GNGRKWICTYKSALVVWPDAPSHGNQALRYWLGIDNIHPSFDRDAAQPPHRALPDAYVTA 167 Query: 174 FCFDMLRHTAAAH 186 L Sbjct: 168 HILLELLKHKTPE 180 >UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM Length = 486 Score = 88.4 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 45/194 (23%), Gaps = 16/194 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF---VPHITVEQLAAADPKAMEING 59 D ET G P + + + DP+A+ I G Sbjct: 12 PTFYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPDPEAVLITG 71 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLT 118 + + + E A A + G N FD + Sbjct: 72 ITPQYALNQGVNEANFAQAIVQEMSQ-PNTIIIGYNNIRFDDEVTRSLCYRNFYD-PYAH 129 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELE----------GLDAVAERLGVPVVNRHSAIGD 168 + + R + A L+ + + + H A+ D Sbjct: 130 TWQNGNSRWDLIDVVRACYALRPEGIHWPEDEDGRVTLRLEKLTQANRIDHGQAHDAMSD 189 Query: 169 AAATAFCFDMLRHT 182 AT +L Sbjct: 190 VRATIAMAQLLAEK 203 >UniRef50_B8GP22 Exonuclease n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GP22_THISH Length = 236 Score = 88.4 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 14/169 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF--VPHITVEQLAAADPKAMEING 59 + +V+D+ETTGLD + + VGL+ V + ++ D + ++G Sbjct: 39 EARFVVIDVETTGLDLSRSELLSVGLVPVGPHGIELGGLDEIVLRREVTRIDKDNLVVHG 98 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 A V + + + FD I+ R + Sbjct: 99 ISPTESAAGV----DIHEALSSVLERIGKTWLVAFHADFDRIILGRTLRK--------QL 146 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 G + DLA + L+GLD +P RH A D Sbjct: 147 GVKLRNPFLDLAMLLPALYSEGTAGLKGLDDWLGHFAIPCPVRHRASAD 195 >UniRef50_UPI000155D9F8 PREDICTED: similar to Interferon-stimulated gene 20 kDa protein (Promyelocytic leukemia nuclear body-associated protein ISG20) (Estrogen-regulated transcript 45 protein) n=1 Tax=Equus caballus RepID=UPI000155D9F8 Length = 171 Score = 88.0 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 26/187 (13%) Query: 3 KQLIVVDLETTGLDYDTAL-PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++++ +D E GL L+++ ++ + I + ++G Sbjct: 5 REVVAMDCEMVGLGPFGESGLARCSLVDLHG--TVLYDKFIQPD--GEIVDYRTRVSGVT 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + + A E+ LRG G + D + Y++ + Sbjct: 61 PRHMEKAT----PFTEARQEILQLLRGKLVVGHDLKHDFKALKESMDGYAIYDTSTD--- 113 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNR-HSAIGDAAATAFCFD 177 K + L ++ERL + HS++ DA AT + Sbjct: 114 ----------RLLWRKAKLQNCRRVSLRVLSERLLGWHIQNSRSGHSSVEDARATMELYK 163 Query: 178 MLRHTAA 184 + R Sbjct: 164 ISRQLRE 170 >UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKN8_DESAH Length = 471 Score = 88.0 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 52/190 (27%), Gaps = 16/190 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLN--VDTGESLYFVPHITVEQLAAADPKAMEINGY 60 K + D+ET+GL+ + + ++ E I++ P A + Sbjct: 2 KTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVISLRNDIVPSPGAFITHRL 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTV 119 L Q A + + G N FD + ++ Sbjct: 62 TPEDLKDGLCEYQGVA-LIHRLLN-TPDTISIGYNSLGFDDEFLRFAFYR-NLLDPYTHQ 118 Query: 120 GRVWHHRLADLAAYAAGKLNIDPT---------ELEGLDAVAERLGVPVVN-RHSAIGDA 169 R+ L ++ L+ ++E+ + H A+ D Sbjct: 119 YANDCARMDLLPIATLYRIFKPDGIHWPVIDDKASMRLELISEKNNLVQSGRAHDAMTDV 178 Query: 170 AATAFCFDML 179 AT L Sbjct: 179 EATLALARRL 188 >UniRef50_Q7PQ12 AGAP005050-PA n=1 Tax=Anopheles gambiae RepID=Q7PQ12_ANOGA Length = 223 Score = 88.0 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 51/184 (27%), Gaps = 29/184 (15%) Query: 6 IVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D E G+ D + V ++N + V+ EI+G Sbjct: 50 IALDCEMVGIGPDGKEHMLARVSIVNEQGDVIVD----CYVKPQETVTDYRTEISGIRPE 105 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + ++ + G G D ++ + Y+ Sbjct: 106 HV-NKGVDFKTIRELVRQL---IHGKILVGHALKNDLMVLNLKHPKYN------------ 149 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNRHSAIGDAAATAFCFDMLR 180 + D + Y L ++A + H ++ DA A + + Sbjct: 150 ---IRDTSRYRPIAKKAGSFGTPSLKSIAYVFLREDI-QDGSHCSVEDARAAMKIYMLFE 205 Query: 181 HTAA 184 Sbjct: 206 KEWE 209 >UniRef50_C5L3L2 RNA exonuclease, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5L3L2_9ALVE Length = 362 Score = 88.0 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 55/184 (29%), Gaps = 24/184 (13%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 K ++ +D E G + + + G+ L V ++ G Sbjct: 63 TKDVVAIDCEMVGTGPEGKDSILARASIVNYFGKVLLDA---LVRPTKKVTDYRTQVTGL 119 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E L R + ++ + L G D I+ G Sbjct: 120 DEATLNRLGQSAEEVKEKAASIL--LNQKVVVGHAIHHDLDILD-------------LTG 164 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV---VNRHSAIGDAAATAFCFD 177 ++ + D + Y + T++ L + E L + HS++ DA T + Sbjct: 165 KIDPILIRDTSTYPGLRPENLTTKVPSLKKLTE-LHLDRKIQTGTHSSVEDARCTLMLY- 222 Query: 178 MLRH 181 L+ Sbjct: 223 KLKK 226 >UniRef50_Q9H9L3 Interferon-stimulated 20 kDa exonuclease-like 2 n=19 Tax=Eutheria RepID=I20L2_HUMAN Length = 353 Score = 88.0 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 54/194 (27%), Gaps = 29/194 (14%) Query: 1 MAKQLIVVDLETTGLDYDTA--LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 + ++++ +D E G ++N + + + Sbjct: 175 LPRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDE----YILPPCHIVDYRTRWS 230 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G ++ + +A G++ L G G D + S+ Sbjct: 231 GIRKQHMVNAT----PFKIARGQILKILTGKIVVGHAIHNDFKALQ-YFHPKSLTRDTSH 285 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNR-HSAIGDAAATAF 174 + + K + L + ++L + V HS++ DA AT Sbjct: 286 IPPLNR------------KADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATME 333 Query: 175 CFDMLRH-TAAAHL 187 + L HL Sbjct: 334 LY-KLVEVEWEEHL 346 >UniRef50_Q4PER6 RNA exonuclease 4 n=2 Tax=Eukaryota RepID=REXO4_USTMA Length = 375 Score = 88.0 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 30/179 (16%) Query: 5 LIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +D E G+ + V ++N V ++G Sbjct: 135 YLAIDCEMVGVGDKGSESILARVSIVNFHGATIYDQF----VRPQEKVTDYRTWVSGVRP 190 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + GEV + ++G G D + + Sbjct: 191 KDLKGA----PSFSQVQGEVANLIKGKVLVGHAIQNDLKAL---------------LLSH 231 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV---NRHSAIGDAAATAFCFD 177 + D A + + ++ T+ L +A+ LG+ + HS++ DA AT F Sbjct: 232 PKVLIRDTATFQPLR-DLAKTKYPSLKKLAKLVLGIDIQLEGESHSSVEDARATMAVFR 289 >UniRef50_C1DKH9 DNA polymerase III, epsilon subunit n=17 Tax=Pseudomonadaceae RepID=C1DKH9_AZOVD Length = 240 Score = 88.0 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 13/164 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGY 60 A++ +V+DLETTGL+ + + + +G + ++ T+ + + +++ I+G Sbjct: 41 AQRFVVLDLETTGLNVERDVVLSIGAVLIENDAIDLSRQFECTLRRRLKSVTESVLIHGI 100 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A A ++ F + FD ++ R +G Sbjct: 101 APSALAVGTAP----AEALLRFMEYAGDCVFLAFHAPFDQRMLGRALK--------DELG 148 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 H D+A A GLD + G+ + RH Sbjct: 149 YRLRHPFLDVADLAPMLFPEALVHPGGLDQWIQYFGLDMSRRHH 192 >UniRef50_Q5TYH8 AGAP012826-PA n=2 Tax=Culicidae RepID=Q5TYH8_ANOGA Length = 207 Score = 87.6 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 51/184 (27%), Gaps = 29/184 (15%) Query: 6 IVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D E G+ D + V ++N + V+ EI+G Sbjct: 34 IALDCEMVGIGPDGKEHMLARVSIVNEQGDVIVD----CYVKPQETVTDYRTEISGIRPE 89 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + ++ + G G D ++ + Y+ Sbjct: 90 HV-NKGVDFKTIRELVRQL---IHGKILVGHALKNDLMVLNLKHPKYN------------ 133 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNRHSAIGDAAATAFCFDMLR 180 + D + Y L ++A + H ++ DA A + + Sbjct: 134 ---IRDTSRYRPIAKKAGSFGTPSLKSIAYVFLREDI-QDGSHCSVEDARAAMKIYMLFE 189 Query: 181 HTAA 184 Sbjct: 190 KEWE 193 >UniRef50_C6QF81 Exonuclease RNase T and DNA polymerase III n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QF81_9RHIZ Length = 225 Score = 87.6 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 54/189 (28%), Gaps = 29/189 (15%) Query: 3 KQLIVVDLETTGL------DYDTALPVEVG-----LLNVDTGESLYFVPHITVEQLAAAD 51 ++++ VD ETTGL D + +G + G + A+ Sbjct: 22 QRILFVDTETTGLRRPSAASEDHDRVISIGFFDTDASALQAGFCRGKFGYFIFNPQQASA 81 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTY 110 A ++GY +R L ++ A + N FD V + Sbjct: 82 AGARRVHGYSDRILAQQ----DTFASCADMLFPAFGSADLIVSHNTDFDRPFVESEFAGA 137 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDA 169 + + LDA +RLG+ RH A+ DA Sbjct: 138 GR--------SLRGKSWHCTMQAERAR----GGGSASLDASIDRLGIQRQSGRHGALEDA 185 Query: 170 AATAFCFDM 178 + Sbjct: 186 WLAMMLYLA 194 >UniRef50_A6QIL2 Phage exonuclease n=19 Tax=root RepID=A6QIL2_STAAE Length = 310 Score = 87.6 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 50/182 (27%), Gaps = 18/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + V+D ET ++ P EV + + + + K +I+ Sbjct: 5 DIAVLDFET--MNEHMNSPCEVAVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKI-PE 61 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + + E+ L+ + N FD +++ Y +P Sbjct: 62 DV---ILKAPKYPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDS 118 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + L+ + + HSA D A + L Sbjct: 119 INIF-----------RSFHAISSFKLENLCSLYDIDKEKLHSAKFDVLALSKMLISLAKN 167 Query: 183 AA 184 Sbjct: 168 NQ 169 >UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 Tax=Clostridium RepID=A6LV05_CLOB8 Length = 976 Score = 87.2 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 58/180 (32%), Gaps = 23/180 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +I +D+ETTGLD + +E+G + V G + I ++ Sbjct: 10 DNVIYLDIETTGLDETCSEIIEIGAVKVKNGVITTYNTLIRPRGRVPISIYSLC------ 63 Query: 63 RGLYRE-ALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L L+ + EV ++L N F+ ++ + Sbjct: 64 SDLKEADLLSARSLNSIKQEVLEFLEDLPLICHNGNFERKFLSFY------------IPE 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + + + L+++ + + + H + D+ T + L Sbjct: 112 IKNTIMD---SMELAIILEPWRKEYNLNSLIKEITNLNKDELHRGLSDSIDTLKVVNSLL 168 >UniRef50_Q6DEW6 RNA exonuclease 4 n=3 Tax=Euteleostomi RepID=REXO4_XENTR Length = 414 Score = 87.2 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 28/186 (15%) Query: 6 IVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G+ D V ++N+ V ++G Sbjct: 229 VAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDK----YVRPTERVTDYRTAVSGIRPD 284 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + EV + LRG T G D I+ Sbjct: 285 DIKNG----EAFKDVQAEVAEILRGRTLVGHAVHNDLKIL---------------FLDHP 325 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPV-VNRHSAIGDAAATAFCFDMLRH 181 + D Y K + + L + E+ L V V H ++ DA A + M + Sbjct: 326 KKAIRDTQKYKPFKEKV-KSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKK 384 Query: 182 TAAAHL 187 A + Sbjct: 385 CWEAAI 390 >UniRef50_B6FR49 Putative uncharacterized protein n=2 Tax=Clostridium nexile DSM 1787 RepID=B6FR49_9CLOT Length = 190 Score = 87.2 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 46/180 (25%), Gaps = 19/180 (10%) Query: 6 IVVDLETTGLDYD----TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 IV DLETTGL + + ++++ + F + E + KA ING Sbjct: 17 IVYDLETTGLYPFSPELGDEILSMCIMDLQGS--VLFEHYFKPEHTESWS-KAAAINGIT 73 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 + E + N FD + + + + Sbjct: 74 PEKVENEKPFSFYRDEVQRIFDA---ADILITYNGIHFDDSFLEAA----GIEIPDVMQF 126 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V L A H A D AT C+ + Sbjct: 127 DVMLKFA---WLMHEWDDYHKSWRWHKLINCAAYYNYEF-PAHDATEDVRATLHCYTEMM 182 >UniRef50_C0VV73 DNA polymerase III epsilon subunit n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VV73_9CORY Length = 449 Score = 87.2 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 18/162 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 + +D+ET + D +E+G+ V G + + I+G Sbjct: 104 DFVAIDVET--ANDDWGSIIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIR 161 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E A + V+++ N FD T +AR +P G Sbjct: 162 PEDIEGE----PSFAQRYELVKEFTGELPMVSHNAQFDFTALARACHASHCAAAPNEFG- 216 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 + A + L V LG+ + + H Sbjct: 217 ---------CSLALSRSRDLGFATNRLPDVCRGLGIALEHHH 249 >UniRef50_C1BVW9 RNA exonuclease 4 n=2 Tax=Caligidae RepID=C1BVW9_9MAXI Length = 325 Score = 87.2 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 26/187 (13%) Query: 4 QLIVVDLETTGLDYDTAL-PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++I +D E G+ ++ A + + G+++Y V+ +++G Sbjct: 128 KIIGMDCEMVGVGFNGARSILARASIVNHFGKTIYDKF---VKPSEKVTDYRTDVSGIRP 184 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + V E+ + ++G G D ++ Sbjct: 185 KDIAKGI----EFKVVQEEISEIIKGRILVGHAIKHDLKVL---------------YLSH 225 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPV-VNRHSAIGDAAATAFCFDMLR 180 + D + Y + D L + A L V V HS + DA A + M R Sbjct: 226 PKKYIRDTSIYKPFRKIFDG-RTPSLKKLTATILSVNVQEGEHSPVEDARAAVRLYTMHR 284 Query: 181 HTAAAHL 187 L Sbjct: 285 KEWENSL 291 >UniRef50_C3Z6U1 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Z6U1_BRAFL Length = 222 Score = 87.2 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 58/196 (29%), Gaps = 20/196 (10%) Query: 5 LIVVDLETTGLDYDTA----LPVEVGLLNVDT---GESLYFVPHITVEQLAAADPKAMEI 57 VVD E T + A +E G + VD + F + E+ Sbjct: 10 YCVVDFEATCIKPRRADFRTEIIEFGAVIVDGSNFQMADEFHEFCRPVENPVLHQFCKEL 69 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP------AFDSTIVARQRVTYS 111 G + + + V + Q WL SN FD + R + S Sbjct: 70 TGIQQDTVD----SADPFPVVFDRFQKWLSNRGLIDSNFALVTDGIFDCNQIMRSQCEVS 125 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAA 170 P R + ++ + G + + LG+ + HSAI DA Sbjct: 126 QMSFPSFARRFSNIKIHYMQFM--GIRLRRGQPTPRIPDMLRALGISQEGQLHSAISDAR 183 Query: 171 ATAFCFDMLRHTAAAH 186 + L A+ Sbjct: 184 NICRIMEALSRRLRAN 199 >UniRef50_B1WBN4 REX4, RNA exonuclease 4 homolog (S. cerevisiae) n=4 Tax=Eutheria RepID=B1WBN4_RAT Length = 409 Score = 87.2 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 56/184 (30%), Gaps = 28/184 (15%) Query: 6 IVVDLETTGLDYDTALPVE--VGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G+ + V ++N V+ ++G Sbjct: 231 LALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDK----YVKPTEPVTDYRTAVSGIRPE 286 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ V EV L+G G D ++ Sbjct: 287 NLKQG----EEFEVVKKEVAAMLKGRILVGHALRNDLKVL---------------FLEHP 327 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNR-HSAIGDAAATAFCFDMLRH 181 ++ D + + + L ++E+ LG+ V H ++ DA A + M++ Sbjct: 328 KKKIRDTQKFKPFRSLVKSA-RPSLKQLSEKILGLRVQQAEHCSVQDAQAAMRLYIMVKR 386 Query: 182 TAAA 185 + Sbjct: 387 KWES 390 >UniRef50_A9HQT1 Exonuclease n=3 Tax=Proteobacteria RepID=A9HQT1_9RHOB Length = 287 Score = 86.9 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 61/184 (33%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D+ET + + A VG+ + GE L + ++ D + I+G E Sbjct: 2 KFVAIDVET--ANANMASICSVGVAVFENGE-LAQEWYSLIDPRDYFDGMNVSIHGIDET 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + A ++ L N FD + + +S+P Sbjct: 59 QV----VGAPTFAEITEQLGAMLSDNVVVTH-THFDRVAMHQAARHWSVPP--------V 105 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D A A GL V + +G H+A+ DA A+ + + Sbjct: 106 TCTWLDSARVARRTWEECAQRGYGLANVCKLIGHTFE-HHNALEDAKASGVVLLAAMNKS 164 Query: 184 AAHL 187 L Sbjct: 165 GFDL 168 >UniRef50_B8HHY2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HHY2_ARTCA Length = 197 Score = 86.9 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 53/167 (31%), Gaps = 18/167 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYY 61 + +D E + + ++GL+ V G H + + + ++G Sbjct: 6 DFVAIDFEL--ANAKHSSICQIGLVKVRDGVLGKTHTHFVMPPAGQQNFGHRQIAVHGIT 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + + ++ + N + +++ + + P T Sbjct: 64 RRMIDGADG----WDLMLPRLEAFTGDLPLVAHNVVAERSMIRQTTEAIGLTPPPFTFY- 118 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 A +L++ E L+ + E LG+P + H A D Sbjct: 119 ---------CTQRAAQLHLPGQESYRLNMLVESLGLPPLQHHDAGED 156 >UniRef50_Q2B6U8 DNA polymerase III subunit epsilon n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6U8_9BACI Length = 214 Score = 86.9 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 50/187 (26%), Gaps = 30/187 (16%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVD----TGESL---YFVPHIT-VEQLAAADPK 53 K+ ++VD+ETTGL +E+ + TGE L + A Sbjct: 4 NKKGLLVDVETTGLAPGGDEIIELAFILFSYDGATGEILQVEEKESFLREPLSSRALRNY 63 Query: 54 --AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS 111 A I+G + + + + + ++ N +FD + + + + Sbjct: 64 SSAYRIHGIPFEMVRGQVFH----DESVQSFLN--KADSVFAHNASFDRSFMYQMYPEVN 117 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 L + L + + H A+ D Sbjct: 118 --------------DLKWYCTMKGVQWKKYGFANSKLATLLSAHNITDHQTHRAMDDITY 163 Query: 172 TAFCFDM 178 Sbjct: 164 LMELMKQ 170 >UniRef50_B9KY42 Putative DNA polymerase III, epsilon chain (EC ) n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY42_THERP Length = 190 Score = 86.9 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 14/158 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++++D ETTG+ +E+ +L+ L V+ DP A+ ++G E Sbjct: 20 VVILDTETTGIR-SQDQVIELAVLDTHGNVLLE----TLVKPSCPIDPAALRVHGLSEAH 74 Query: 65 LYREALTEQQTAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + V + E+ + R N FD ++ + Y + L+ W Sbjct: 75 LAHA----PEWPVVYRELRVIFDRARLIVTYNAPFDRRLIEQTCRCYGLSLPDLS----W 126 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 + A YA L +RLG+P Sbjct: 127 DCAMRRFAEYAGPPPTESWRNYHRLSEALQRLGIPHPG 164 >UniRef50_Q9VUC3 CG6833 n=1 Tax=Drosophila melanogaster RepID=Q9VUC3_DROME Length = 290 Score = 86.9 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 27/180 (15%) Query: 3 KQLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++ +D E G+ ++T + V ++N L V+ ++G Sbjct: 115 NRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLLDK----YVKPRKEVTDYRTSVSGI 170 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + A EV + G G D ++ + Sbjct: 171 RPQDIANG----EDFAAVQNEVMKLIHGRILVGHGLRNDLAVL-------GIRHPFHD-- 217 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPV-VNRHSAIGDAAATAFCFDM 178 + D + Y I T L + + LG + H+++ DA A ++ Sbjct: 218 ------IRDTSHYKPLCKLISNTHTPSLKRLTKAVLGQEIQTGEHNSVEDARAAMGIYNR 271 >UniRef50_A5UAG1 Ribonuclease T n=251 Tax=Proteobacteria RepID=RNT_HAEIE Length = 229 Score = 86.9 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 30/195 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV------PHITVEQLAAADPKAMEING 59 +++D+ET G D +E+ + + E+ Y HI + A +P++++ NG Sbjct: 23 VIIDVETAGFDAKKDALLELAAITLKMDENGYLHPDQKCHFHIEPFEGANINPESLKFNG 82 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWL---------RGNTFAGSNPAFDSTIVARQRVTY 110 ++ A + + + + N AFD + V Sbjct: 83 I---DIHNPLRGAVSELDAITGLFQMIRRGQKDADCQRSIIVAHNAAFDQSFVMAAAERT 139 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGD 168 + +P ++ D A+ A L +P HSA+ D Sbjct: 140 GVKRNPFHPFGMF-----DTASLAGLMFGQTV-----LVKACLAAKIPFDGKQAHSALYD 189 Query: 169 AAATAFCFDMLRHTA 183 TA F + + Sbjct: 190 TERTAELFCYMVNHL 204 >UniRef50_C4NV58 Exonuclease family protein n=11 Tax=Bacteria RepID=C4NV58_ECOLX Length = 289 Score = 86.9 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 56/173 (32%), Gaps = 25/173 (14%) Query: 1 MAKQLI-----VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM 55 MA++ + V+D ETTGL + +E+ + ++ L + DP+AM Sbjct: 97 MAQRWVALEPLVLDTETTGLG-ERDQVIELAVTDIRGAVLL----CTRLRPTVEIDPQAM 151 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 ++G E L E + L G NP+FDS ++ + + S Sbjct: 152 GVHGITETELSNE----PTWTQVAPALARLLSGRHLVIFNPSFDSRMLRQTASAFGDQLS 207 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELE---GLDAVAERLGVPVVN-RHS 164 W L A T L GV HS Sbjct: 208 -------WWQEQNCLCAMKLAADAFGSTNRHGTISLADATCEAGVSWKGRAHS 253 >UniRef50_B2V1C6 Exonuclease, RNase T and DNA polymerase III n=5 Tax=Clostridium RepID=B2V1C6_CLOBA Length = 243 Score = 86.5 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 21/186 (11%) Query: 5 LIVVDLETTGLDYDTA-------LPVEVGLLNVDTGESL--YFVPHITVEQLAAADPKAM 55 IV DLE +++G + +++ + F I P Sbjct: 3 YIVYDLEFNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFNRLIKPTVHTEIHPFIK 62 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPF 114 ++ + +E+ + + + ++ F D + + +++ Sbjct: 63 DLTQITTEMVN----SEKYFSDVYDDFIKFIGNKEFTVCIWGTSDIKELLKNVKFHNLE- 117 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATA 173 + D+ A+ + GL A E +P+ H A DA TA Sbjct: 118 -----EIYDLRKYIDVQNLASKYIKTQKGTKVGLKAAIEFFNLPIEKEFHDAFNDAYYTA 172 Query: 174 FCFDML 179 F L Sbjct: 173 QIFKKL 178 >UniRef50_C9KKS1 Putative DNA polymerase III subunit epsilon n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKS1_9FIRM Length = 241 Score = 86.5 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 56/185 (30%), Gaps = 15/185 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYER 63 ++ DLE G +E+G + + G + + + + + + G + Sbjct: 41 VVSFDLEMAGAFP--DDIIEIGAIRLPLG-NDKIEVFRRLIRPRTFINRTVRDMTGLTKE 97 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 L ++ V E D++ G D + + + Sbjct: 98 DLRDKS----TLDVILPEFLDFVDPEDLVVGHAIGDNDLLSINLALIRMNHKN---GTNI 150 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + R D + + + L A+ E G +H A DA A+ + L Sbjct: 151 RFCPRYLDT--VRLAQQLLPKRKKYNLIALLESFGWHSKKKHRAFEDALASYVLLECLLE 208 Query: 182 TAAAH 186 +A Sbjct: 209 DSAEK 213 >UniRef50_O94375 RNA exonuclease 4 n=1 Tax=Schizosaccharomyces pombe RepID=REXO4_SCHPO Length = 260 Score = 86.5 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 26/181 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I +D E G+ D ++ V ++N V ++G Sbjct: 92 KYIAMDCEMVGVADDMSVLARVSIVNYHGHVVYD----TYVRPKEKVTDWRTWVSGVKSF 147 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + EV L G D ++ + Sbjct: 148 HMRDA----PSFEKVQAEVAKILDNRVLVGHAVHNDLKVL---------------LLSHP 188 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDMLRH 181 + D + ++ + GL +AE LG + +HS++ DA AT + ++ Sbjct: 189 RRMIRDTSRFSGYRKLAKG-RTPGLKKLAEVILGRDIQSGQHSSVQDAQATMELYKKVKK 247 Query: 182 T 182 Sbjct: 248 E 248 >UniRef50_Q1NYP0 DNA polymerase III alpha subunit (Fragment) n=4 Tax=cellular organisms RepID=Q1NYP0_9FLAO Length = 511 Score = 86.5 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 20/192 (10%) Query: 5 LIVVDLETTGLDYDTA------------LPVEVGLLNVDTG-ESLYFVPHITVEQLAAAD 51 I+ D ETTGL V++ + +D + + +I + Sbjct: 2 YIIFDTETTGLPLPKDFNPPIINIINLPRLVKLSWVLLDEKLQLIELKDYIIKPEGYEIP 61 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTY 110 + +I+G + + + + E ++ + G N FD IV + + Sbjct: 62 FNSTKIHGISTKYAIEKGI---KINFVLEEFNLIIKKSNFLIGHNVFFDIKIVCAEFIRI 118 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 + S + ++ + + L + ++L H + D Sbjct: 119 NKKISFFKKKIIDTKEISINYC---AIKMGEKFKWPTLTELYKKLFNDTFIAHDSKSDVL 175 Query: 171 ATAFCFDMLRHT 182 AT CF L Sbjct: 176 ATTKCFFELLRI 187 >UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX1_BUCBP Length = 481 Score = 86.5 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 17/198 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF---VPHITVEQLAAADPKAMEINGY 60 + D ET G + P + + D ++ DP+++ I G Sbjct: 10 TFLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPDPESVLITGI 69 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTV 119 + + E + A + G N FD + S Sbjct: 70 SPKYTSLFGVNEFEFAKKIYSLF-MKSDTCIIGYNNIYFDDEFTRNIFYRNFL-NSYEWS 127 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELE----------GLDAVAERLGVPVVNRHSAIGDA 169 + + R L A + L ++ + H+A D Sbjct: 128 WKNGNSRWDMLDLLRACYVLRPEGINWPRNEDNSVSLRLSDISLANNIVHNVAHNASSDV 187 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 188 YATMNI-AKLIKQKKPKL 204 >UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 Tax=Enterobacteriaceae RepID=A8GD51_SERP5 Length = 222 Score = 86.5 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 38/185 (20%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 V+D ET GL VEV +++ G+ + +AM I+ E+ + Sbjct: 5 VIDTETCGL---EGGVVEVASVDLIDGQI-ANPMSDLISPDRPIGIEAMAIHHITEQMVE 60 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + + AVA G + + N AFD ++ + Sbjct: 61 GK----PRIAVAIGR---YQGSPYYVAHNAAFDRGVLPEMHGAW---------------- 97 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-------NRHSAIGDAAATAFCFDML 179 + + + G + L + V H A+ D TA + Sbjct: 98 ---ICTMKLARNLYPDIK-YGNQYLRYALNLDVQLPQDTTLYPHRALYDCYVTAALLQRI 153 Query: 180 RHTAA 184 + Sbjct: 154 IKDSG 158 >UniRef50_Q63ZS9 LOC494737 protein n=5 Tax=Euteleostomi RepID=Q63ZS9_XENLA Length = 264 Score = 86.5 bits (213), Expect = 5e-16, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 46/188 (24%), Gaps = 27/188 (14%) Query: 6 IVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G ++N + +G ++ Sbjct: 60 VAIDCEMVGTGPGGRIGEVARCSIVNYRGDVVYDK----YINPELPIKNYRTRWSGITKQ 115 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A E+ L+ G D + + + Sbjct: 116 NLKNAI----PFKTAQKEILKILKDKRVVGHALHNDFKALK---------YFHPSSQTRD 162 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVV---NRHSAIGDAAATAFCFDML 179 ++ L A + L +A LG + N H ++ DA A + ++ Sbjct: 163 TSKIPLLKEIA----GLPSNNGASLKTLAFNLLGKRIQVGSNGHCSVEDAQACLELYKLV 218 Query: 180 RHTAAAHL 187 L Sbjct: 219 EDQWEETL 226 >UniRef50_Q9GZR2 RNA exonuclease 4 n=22 Tax=Eukaryota RepID=REXO4_HUMAN Length = 422 Score = 86.5 bits (213), Expect = 5e-16, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 58/184 (31%), Gaps = 28/184 (15%) Query: 6 IVVDLETTGLDYDTALPVE--VGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G+ + V ++N V+ ++G Sbjct: 244 LALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDK----YVKPTEPVTDYRTAVSGIRPE 299 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ V EV + L+G G D ++ Sbjct: 300 NLKQG----EELEVVQKEVAEMLKGRILVGHALHNDLKVL---------------FLDHP 340 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNR-HSAIGDAAATAFCFDMLRH 181 ++ D Y K + + L ++E+ LG+ V H +I DA A + M++ Sbjct: 341 KKKIRDTQKYKPFKSQV-KSGRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKK 399 Query: 182 TAAA 185 + Sbjct: 400 EWES 403 >UniRef50_UPI000192786A PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI000192786A Length = 287 Score = 86.1 bits (212), Expect = 5e-16, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 53/198 (26%), Gaps = 28/198 (14%) Query: 5 LIVVDLETTGLDYD----TALPVEVGLLNVDTG--ESL-YFVPHITVEQLAAADPKAMEI 57 +V+D E T + + +E + V T E + F + + Sbjct: 97 YVVIDFEATCDEPNPSGFQHEIIEFPAVLVKTSTLEIVSEFHSYCRPVINPVLSEFCKSL 156 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRG------NTFAGSNPAFDS-TIVARQRVTY 110 G + + + V WL+ ++ +D + Q T Sbjct: 157 TGITQVQVE----SSSVFEVVLQRFDKWLKQQVMPTETFCIATDGPWDLDRFLKNQCKTL 212 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDA 169 ++ H N ++ + + LG+ R H I DA Sbjct: 213 NIQIP---------HYFHRWVNIRKHFYNYYKINQANVELMLQHLGMEFEGRPHRGIDDA 263 Query: 170 AATAFCFDMLRHTAAAHL 187 A L A L Sbjct: 264 RNIARILIQLIRDGADPL 281 >UniRef50_C5R9G6 Putative uncharacterized protein n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R9G6_WEIPA Length = 183 Score = 86.1 bits (212), Expect = 5e-16, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 53/192 (27%), Gaps = 27/192 (14%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA----AADPKAMEIN 58 K +V DLE G + +E+G + V +++ I + + Sbjct: 7 KNYVVFDLEMNG----SNQIIEIGAIKVTGSQNIEKFSVIVNNPPVGSAMKSFKYITKSM 62 Query: 59 G-----YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSM 112 G + E+ A ++ G D ++ ++ Sbjct: 63 GGKNGWITLDMISHGICEER----ALNRFMRFVGDYAIVGHAIVDGDVQLIKEGLQHNNL 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGDAAA 171 +L D L +AE GV + +H A+ DA Sbjct: 119 GKWDT------RGKLYDTQQIHGAIAGNPQ--DISLMDLAEMYGVDLGEQKHRALPDAKE 170 Query: 172 TAFCFDMLRHTA 183 T F ++ Sbjct: 171 TLAIFLAMKKAW 182 >UniRef50_D0LL62 Exonuclease RNase T and DNA polymerase III n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LL62_HALO1 Length = 308 Score = 86.1 bits (212), Expect = 5e-16, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 46/153 (30%), Gaps = 19/153 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L+V D+ETTG D +E+ + + A +P A E++G Sbjct: 5 ELLVFDVETTGTDRRRDQIIELCVQFGLGD--DAPNRVWRIRPDVAIEPAAQEVHGISMD 62 Query: 64 GLYREALTEQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + E+++ + G N +FD ++ + + Sbjct: 63 DLAE----CPRFPEVADELRELFASATVLVGYNVSFDIGMLQAEYERLG------QFLDL 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERL 155 + D E L +R Sbjct: 113 GGKDVVD------AFRLWQQCEPRSLQHAHKRF 139 >UniRef50_A4FXS5 Exonuclease, RNase T and DNA polymerase III n=5 Tax=Methanococcus RepID=A4FXS5_METM5 Length = 191 Score = 86.1 bits (212), Expect = 5e-16, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 58/186 (31%), Gaps = 18/186 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL--YFVPHITVEQLAAADPKAMEINGYYE 62 + +D ETTGL ++ L D +L F + V+ A +++G Sbjct: 2 YVFLDTETTGLHPGQ--IAQLSYLVTDEDLNLKKVFNQYYLVDH---MSRSAAKVHGLTM 56 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L E EV+D L + G N +FD + + + P Sbjct: 57 DIL-DELSNGMTFEDTVDEVRDDLEDSVIIGHNISFDIRFLKAEFERLGPEYIPKDKFCT 115 Query: 123 WHH--RLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 H + L K ++ EGL+ + G V H A D Sbjct: 116 MFHFTPICKLPGQKRYKRPKLVELMEFLEQCPHEGLEFTKKTYGCSDVGFHDARYDTGIL 175 Query: 173 AFCFDM 178 C+ Sbjct: 176 YLCYKK 181 >UniRef50_C6BPA9 Exonuclease RNase T and DNA polymerase III n=2 Tax=Burkholderiales RepID=C6BPA9_RALP1 Length = 330 Score = 86.1 bits (212), Expect = 5e-16, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 21/180 (11%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D ETTGL +E+ +++ + F I L P A I+G Sbjct: 161 VYLDTETTGLSAASGDELLELAVID--DAGKVLFETLIRPNHLTEW-PAAQVIHGITPAD 217 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTV--GR 121 + + + + G N FD + + + + Sbjct: 218 VAGA----PSLSAVLQGLAAAIEGAEALVIFNADFDLGFLPEPLRPLAKQKARCAMQAFA 273 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG-VPVVNRHSAIGDAAATAFCFDMLR 180 +W D + L A G V H A DA A + LR Sbjct: 274 LWCGEWDD---------YRYSYRWQNLQQAAAIAGHVWEGRAHRARADAFAVRTVWHWLR 324 >UniRef50_Q4Q4Z6 Exonuclease-like protein (Dna polymerase iii epsilon subunit-like exonuclease) n=2 Tax=Leishmania RepID=Q4Q4Z6_LEIMA Length = 188 Score = 86.1 bits (212), Expect = 5e-16, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 41/181 (22%), Gaps = 35/181 (19%) Query: 30 VDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYRE-----------------ALTE 72 + T F ++ A ++G + Sbjct: 8 LWTRGGRVFHRYVRPSDPRRISAAAAAVHGITWETVQNCSPWPVVARELVAYMALVGADA 67 Query: 73 QQTAVAWGEVQDWLRGN-----TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRL 127 +A A E N +FD+ + WH R Sbjct: 68 PVSASAQLEAAQLGGQRAVHLPPLVAHNASFDARFLEHHLRRCGYQ-------IFWHPRY 120 Query: 128 ADLAAYAAGKLNIDPTELEGLDAVAERLGVP-----VVNRHSAIGDAAATAFCFDMLRHT 182 ++ LDA+ L + N H A+ DA TA F + Sbjct: 121 PLTCTRQWAQVAYPHLAN-NLDALCAFLSIDWAADRAANGHDALTDATLTALLFLQMCRR 179 Query: 183 A 183 Sbjct: 180 W 180 >UniRef50_Q5NUS9 Putative exonuclease n=1 Tax=Streptomyces albulus RepID=Q5NUS9_9ACTO Length = 288 Score = 86.1 bits (212), Expect = 5e-16, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 48/179 (26%), Gaps = 26/179 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETT LD +E+ +L+ TG L + + DP+A ++ L Sbjct: 131 VLLDTETTALD---GQIIEIAILDAATGRPLL-DTLVKPTEGVEIDPQAHAVHRLTLEDL 186 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 +V+ + T + AFD + L W Sbjct: 187 ADA----PPWEKVLPKVRKLTKDRTILAYHAAFDRGRIIDHTEQVGKRPMHLADPDNW-- 240 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + L+ H A+GD + Sbjct: 241 -----WCLMQARSQFYGHGRRSLN-----------GPHRAMGDCRKERELLKKISEGHG 283 >UniRef50_UPI000180BB0F PREDICTED: similar to MGC131088 protein n=1 Tax=Ciona intestinalis RepID=UPI000180BB0F Length = 320 Score = 86.1 bits (212), Expect = 5e-16, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 58/186 (31%), Gaps = 28/186 (15%) Query: 4 QLIVVDLETTGL-DYDTALPVE-VGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++ +D E G+ D + V L+N V+ ++G Sbjct: 142 RIVAMDCEMVGVGDDGRDSVLARVSLVNQFGKCIYDKH----VKAREDVTDYRTFVSGIR 197 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + V EV + + G G D ++ Sbjct: 198 PADLENA----EDFEVVQKEVAEIIEGRILVGHALWNDFQVL---------------FLN 238 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDML 179 + D A Y + N+ GL + ++ LGV V HS++ DA A + M Sbjct: 239 HPKKCIRDTAKYKPFR-NLTAGRSPGLRILCKKILGVDVQKGEHSSVQDAQAAMRLYTMH 297 Query: 180 RHTAAA 185 + A Sbjct: 298 KKHWEA 303 >UniRef50_A8JCL9 Predicted protein n=2 Tax=Viridiplantae RepID=A8JCL9_CHLRE Length = 398 Score = 86.1 bits (212), Expect = 5e-16, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 53/203 (26%), Gaps = 34/203 (16%) Query: 6 IVVDLETTGL-----------------------DYDTALPVEVGL-LNVDTGESLYFVPH 41 +VVD ETTG + TA V + + G Sbjct: 202 LVVDTETTGFPRRLPGTPMNGFIREQVPYTDLEGWSTARIVSIAWRVLAPDGRMELQEHG 261 Query: 42 ITVEQLA--AADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFD 99 + + A++I+G + +E L Q N +D Sbjct: 262 YRIVRPVGFVIPADAVQIHGISTQRATQEGLPLDQVLDELMSAIQRWNCGVIVAHNLKYD 321 Query: 100 STIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVP 158 ++ + V R+ A + L + + L Sbjct: 322 LNVILSELYR---RNRAQDVARLERMEGVCTANCSKFYLGRY----HKQAELLKALTDED 374 Query: 159 VVNRHSAIGDAAATAFCFDMLRH 181 + H A DA A A C+ L Sbjct: 375 MRVAHDAECDAEACAKCYVALLQ 397 >UniRef50_UPI0001925D67 PREDICTED: similar to Interferon-stimulated 20 kDa exonuclease-like 1 n=1 Tax=Hydra magnipapillata RepID=UPI0001925D67 Length = 207 Score = 86.1 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 56/176 (31%), Gaps = 23/176 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ +D E G+ + +++ ++ + + +G Sbjct: 25 EVVSLDCEMVGISNNQDALGRCSIVDYFGNVLYDK----YIKPESTITDYRTKWSGIKPH 80 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 +++ A GE+ + ++ G + FD ++ + ++ + Sbjct: 81 HMHQAI----SFKKARGEIYNIIKNKVIVGHSLHFDFKVLK--LNRNNFKIRDISTSTLL 134 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFD 177 N ++ L +A+ LG + H +I D+ AT + Sbjct: 135 RQL-----------ANFPSNQIVSLKRLAQVILGRDIQSGSHCSIEDSIATMDLYK 179 >UniRef50_C0W5G3 Possible DNA polymerase III subunit epsilon (Fragment) n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W5G3_9ACTO Length = 174 Score = 86.1 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 36/127 (28%), Gaps = 8/127 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA----MEINGY 60 VVDLETTGL T +E+GL+ + + A D I+G Sbjct: 49 YAVVDLETTGLSPATDAILEIGLVLTAPDGTPQRTWSTLINPGAGPDGAIEVGPTFIHGL 108 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + L G N FD + + T V Sbjct: 109 LPDDLAGA----PSLDDVADLLVRDLAGRVVVAHNARFDVGFLTQALGTRGHLARGARVP 164 Query: 121 RVWHHRL 127 RV Sbjct: 165 RVCTMEW 171 >UniRef50_D1AX10 Exonuclease RNase T and DNA polymerase III n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AX10_STRM9 Length = 426 Score = 85.7 bits (211), Expect = 7e-16, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 58/186 (31%), Gaps = 21/186 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I++DLETTG+ + +++ ++++ + F + + +A +I+ + L Sbjct: 251 IILDLETTGIR-ENDEIIQLSIIDIKGEKL--FNEYFKPINVTEW-EEAYKIHNIGKEML 306 Query: 66 YREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + ++Q+ L + G FD ++ + V Sbjct: 307 EDKL----TIEEYREKIQNILDSTDYMIGYGIDFDYKLLQ----RQGFNVEHIKKVDVS- 357 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA----FCFDMLR 180 N + L + G H+++ D AT + + Sbjct: 358 ---DYFKYIYRKIFNDPKLKRPKLIECSNYYGFKDRGFHNSLTDCFATLVSYKGIYKYML 414 Query: 181 HTAAAH 186 + Sbjct: 415 EELSDR 420 Score = 83.4 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 16/182 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I++D+ETTG+ +++ ++++ + F ++ + + D A +I+ + Sbjct: 43 IILDVETTGIR-KNDEILQLSIIDIMGN--VVFDKYMKPKYVNDWDD-AFKIHNISHEMV 98 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + ++ + G D + + V + + Sbjct: 99 KNKKYISYYKKDI-EKILK--KHKLIIGYEVNSDIAFLR----RAGIELKSNIVLDIAYL 151 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAAA 185 + + ID L A+ + N H A+ D AT CF + Sbjct: 152 ----FSLLFENENLIDRKIRPSLLDAAKFYNLDF-NAHDALSDCIATLHCFKSILVEKKE 206 Query: 186 HL 187 L Sbjct: 207 KL 208 >UniRef50_Q7F186 Os08g0377400 protein n=3 Tax=Spermatophyta RepID=Q7F186_ORYSJ Length = 286 Score = 85.7 bits (211), Expect = 7e-16, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 26/184 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + VD E G+ + + V++ ++ + + + I+G + + Sbjct: 94 VAVDCEMVGVGAGGSKSALGRVTLVNSWGNVVYDEYTRPVE--RIVDYRTHISGIRPKHM 151 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + V +V + ++G G D ++ P Sbjct: 152 NKAK----DFWVVQKDVAELIKGRILVGHALHHDLKVL-----LLGHP----------KK 192 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPVVN-RHSAIGDAAATAFCFDMLRHTA 183 + D + Y + + L + A+ LG + H I DA A F ++ + Sbjct: 193 DIRDTSEYEVFRR---EGKRRSLKDLTAQVLGAKIQQKEHCPIEDARAAMFIYNKHKKVW 249 Query: 184 AAHL 187 ++ Sbjct: 250 EKNM 253 >UniRef50_B6JWR3 RNA exonuclease n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JWR3_SCHJY Length = 278 Score = 85.7 bits (211), Expect = 7e-16, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 26/177 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I +D E G+ D ++ V ++N + + + ++ ++G Sbjct: 104 KYIAMDCEMVGVANDVSVLARVSIVNYHGR--VVYDTFVRPKE--RVLDWRTWVSGVKSH 159 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A V D L G G D + + Sbjct: 160 HLRDA----PSFEEAQKTVADILDGRVLVGHAVHHDLKAL---------------LLSHP 200 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPV-VNRHSAIGDAAATAFCFDM 178 + D + + + L + ++ LG + +HS++ DA AT + Sbjct: 201 RRMIRDTSKFPGYRKLAKG-RTPSLKKLTQQLLGKEIQTGQHSSVQDAQATMELYKR 256 >UniRef50_A3DCR5 Exonuclease, RNase T and DNA polymerase III n=3 Tax=Clostridium thermocellum RepID=A3DCR5_CLOTH Length = 215 Score = 85.7 bits (211), Expect = 8e-16, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 27/190 (14%) Query: 5 LIVVDLETTGLDYDT------ALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAME 56 IV DLE L+ +E+G + ++ E F I + + Sbjct: 3 YIVYDLE---LNSKPFKSSIPNEIIEIGAIKLNENLQEIGMFSSFIKPKYFKKLFSVVKQ 59 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDST--IVARQRVTYSMPF 114 + + + + W+ + S D I+ + + Sbjct: 60 KTKITQEQIN----SADSFRNVIKQFIRWIGDDYLLISWGHDDVLNLILNCKFNRIKID- 114 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGDAAATA 173 W R D+ + ++ + L+ +GV + N H A+ DA TA Sbjct: 115 --------WLKRNIDIQKQFSAIYHLPSGQRYSLENALALIGVEIDENLHRALTDAQYTA 166 Query: 174 FCFDMLRHTA 183 F + Sbjct: 167 KIFKSIFDKL 176 >UniRef50_B1ZD08 Exonuclease RNase T and DNA polymerase III n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZD08_METPB Length = 187 Score = 85.3 bits (210), Expect = 8e-16, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 19/190 (10%) Query: 5 LIVVDLETTGL--------DYDTALPVEVGL-LNVDTGESLYFVPHITVEQLAAADPKAM 55 ++ D+ET+GL D V++G ++ ++ + P+A Sbjct: 2 ILTFDVETSGLIIRDRPLDDPAQPRMVQLGFTVHTPDRRVVHSYSALIRPDGWEITPEAQ 61 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPF 114 ++G+ R + VA ++ L+ N A D+ I R+ + Sbjct: 62 RVHGFSTEDCGRWGVDS---KVALLDLVSALKTARIAVAHNFANDAAIAQRE-----LNI 113 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATA 173 RL + G + + L + + L G H A+GDA ATA Sbjct: 114 LKAADEGFMRARLRRVCTMRTGAALVQDGKWPTLGRLHKLLAGHEHEGAHDALGDAQATA 173 Query: 174 FCFDMLRHTA 183 CF L Sbjct: 174 RCFWGLVDRK 183 >UniRef50_A5E1X8 RNA exonuclease 4 n=1 Tax=Lodderomyces elongisporus RepID=A5E1X8_LODEL Length = 279 Score = 85.3 bits (210), Expect = 9e-16, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 49/188 (26%), Gaps = 28/188 (14%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G+ D V ++N + V A I+G Sbjct: 112 KYLAMDCEFVGIGKDGEHNALARVSIVNFFGHVIMDE----YVRPKARVTDFRTSISGVA 167 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L +V ++ G A D + Sbjct: 168 PWHLKDAT----PFDDVQKKVSALIKDRILVGHAIANDLECLQLSHPR------------ 211 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPV-VNRHSAIGDAAATAFCFDML 179 L D + + + L + + + + HS++ DA AT F Sbjct: 212 ---RMLRDTVSCSEYRKVAGG-RSPSLRKLMQHFFKINIQDGEHSSVEDARATMLLFRRA 267 Query: 180 RHTAAAHL 187 + ++ Sbjct: 268 KDDIERNM 275 >UniRef50_Q4S474 Chromosome undetermined SCAF14743, whole genome shotgun sequence. (Fragment) n=2 Tax=Tetraodon nigroviridis RepID=Q4S474_TETNG Length = 303 Score = 85.3 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 48/180 (26%), Gaps = 27/180 (15%) Query: 4 QLIVVDLETTGLDYDTA--LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G + +++ D ++ +G Sbjct: 133 KYLALDCEMVGSGPKGSVSQLGRCSVVSYDGDVVYDKF----IKPPVPVTNYRTRWSGIR 188 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R L A A E+ L G G D +++ P R Sbjct: 189 PRNLANAT----PYAAARKEILRLLAGKVVIGHAVHNDFKVLSYCHP----PALTRDTSR 240 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV---NRHSAIGDAAATAFCFD 177 + K + TE L + + + HS++ DA AT + Sbjct: 241 I---------PLLNAKAGLAATECASLKRLTKAIFNRDIQTGKGGHSSVEDARATMELYK 291 >UniRef50_B4QJK2 GD14476 n=11 Tax=Drosophila RepID=B4QJK2_DROSI Length = 290 Score = 85.3 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 27/190 (14%) Query: 2 AKQLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 + + + +D E G+ ++ + V ++N L V+ ++G Sbjct: 114 SNRYLAMDCEMVGVGHNGQDDMLARVSIVNRVGQVLLDK----YVKPRMEVTDYRTSVSG 169 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + A EV L G G D +++ Sbjct: 170 IRPQDIANG----EDFATVQNEVVKLLHGRILVGHALGNDLAVLS--------------- 210 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPV-VNRHSAIGDAAATAFCFD 177 R H + D + Y I + L + LG + H+++ DA A ++ Sbjct: 211 IRHPFHDIRDTSRYKPLCKLISNSHTPSLKRLTMAVLGQEIQTGEHNSVEDARAAMGIYN 270 Query: 178 MLRHTAAAHL 187 + +L Sbjct: 271 RVAADWEKYL 280 >UniRef50_Q5A3Q0 RNA exonuclease 4 n=3 Tax=Candida RepID=REXO4_CANAL Length = 285 Score = 85.3 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 51/188 (27%), Gaps = 28/188 (14%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G+ D + ++N + ++ ++G Sbjct: 115 KYVAIDCEFVGIGKDGEESALARISIINYYG--VVLLDTYVR--PQERVTDWRTWVSGIQ 170 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A + + + G D I+ Sbjct: 171 SYHMQDAI----DFKTAQLKTMELINNKILVGHAVNNDLDIL---------------FLS 211 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVV-NRHSAIGDAAATAFCFDML 179 + D + + I + L + + V + +HS++ DA AT F + Sbjct: 212 HPKSMIRDTCKFPKFR-EIAGGKSPSLKKLIKHFIQVDIQIGQHSSVEDARATMLLFRLF 270 Query: 180 RHTAAAHL 187 + + Sbjct: 271 KREIEQSM 278 >UniRef50_Q4V7K3 MGC115620 protein n=5 Tax=Tetrapoda RepID=Q4V7K3_XENLA Length = 369 Score = 85.3 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 49/188 (26%), Gaps = 27/188 (14%) Query: 6 IVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G + + ++N ++ + +G Sbjct: 196 VAIDCEMVGTGPNGRNSDLARCSIVNWFGDVMYDK----YIKPKSPVTDYRTRWSGIRRE 251 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L VA E+ L G G D + + Sbjct: 252 HLVNAI----PFVVAQKEILKILNGKVVVGHAIHNDYKALN---------YFHPKEMTRD 298 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVV-NRHSAIGDAAATAFCFDML 179 ++ L K E L +A++L + HS++ DA T + ++ Sbjct: 299 TSKIPLLNH----KAGFPEKEAASLKRLAKQLLHKDIQTGRQGHSSVEDAKTTMELYRVI 354 Query: 180 RHTAAAHL 187 L Sbjct: 355 EVEWERKL 362 >UniRef50_UPI0000DB6C62 PREDICTED: similar to XPMC2 prevents mitotic catastrophe 2 homolog n=1 Tax=Apis mellifera RepID=UPI0000DB6C62 Length = 278 Score = 84.9 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 25/184 (13%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I +D E G+ T + + G + + ++ + +++G L Sbjct: 114 IAIDCEMVGIGDGTESMLARISIVNRHGFCV-YDKYVKPREPVQ--DYRTKVSGIRPHNL 170 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 ++ + EV + LRG G +D ++ Sbjct: 171 QNG----EEFEIVQKEVAEILRGRILVGHALKYDLDVL---------------YLSHPRK 211 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPV-VNRHSAIGDAAATAFCFDMLRHTA 183 L D + + + + L +A E LG + HS+I DA A + + ++ Sbjct: 212 HLRDTSRFKTFR-QLSRGNTPSLKKLAHELLGKEIQTGEHSSIEDARAAMQLYMLYKNKW 270 Query: 184 AAHL 187 + L Sbjct: 271 ESEL 274 >UniRef50_C8NWH7 DNA polymerase III subunit epsilon n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NWH7_9CORY Length = 959 Score = 84.9 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 45/159 (28%), Gaps = 18/159 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D+ TTG + VEVG++ +D V+ ++ Sbjct: 7 FAVIDVVTTGFG-GSDRIVEVGVVLLDQQLREQGTWETLVQPNRDI--ATCHVHKLTATH 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E+ +RG N +F+ ++++ + + Sbjct: 64 LKNA----PTWEEVAPELAQVIRGRIGVAHNASFEKRFLSKEFCRVGIATNVGE------ 113 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 D A +L L E G+ H Sbjct: 114 AHWVDTKDLATAQLGCG-----SLADALEAAGLTNSEPH 147 >UniRef50_B1P7L9 YacC n=21 Tax=root RepID=B1P7L9_ECOLX Length = 282 Score = 84.6 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 14/175 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTGLD +TA +E+GL + ++ A +A ++G Sbjct: 105 LFLDTETTGLD-NTAEALEIGLTDAAGQVVFE----TRLKPTVAIGAQAAAVHGIS---- 155 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + +++ + N FD I+ + +S P L V+ Sbjct: 156 EQALCGAPSWTDVARQLRHAIGDRPVIIFNSRFDIRILKQTAAAHSDPADWLEEMTVY-- 213 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDML 179 + A + L + A + G+ HS I DA A + + Sbjct: 214 --CAMELAAGYYGATNRYGTISLASAASQAGLTWEGQAHSTIADARMAAGVVNAI 266 >UniRef50_B8HJ08 Exonuclease RNase T and DNA polymerase III n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJ08_ARTCA Length = 187 Score = 84.6 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 50/185 (27%), Gaps = 21/185 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL---AAADPKAMEINGYY 61 +D E + D A VG+ V G + + D A I+G Sbjct: 9 FTAIDFEA--ANSDRASACSVGVTTVRDGLIT-GTTSWLIRPFTGLDSFDAYASRIHGID 65 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + Q A + + N +D+T++ + Sbjct: 66 ASMV----IDAQPLKDAMLRLSGIIGDGPVLAHNITYDATVLRHSFELTGLGQPRNE--- 118 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L E L V LG+P + H A D+ A A + Sbjct: 119 -----FRCTQTLSRAAL---QLEKTRLHVVTAYLGLPEFDNHDAAADSLACARIALHIAA 170 Query: 182 TAAAH 186 A Sbjct: 171 RRRAS 175 >UniRef50_C4JR78 Predicted protein n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JR78_UNCRE Length = 462 Score = 84.6 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 26/184 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I +D E G PV + ++ TGE + V L + I G E+ + Sbjct: 224 IALDCEMVGT-VAGDYPVSLSAVDYLTGEVILNR---LVRPLVKVTDWRVRITGVTEKTI 279 Query: 66 YREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 ++ + A E+ ++ G + A D ++ + H Sbjct: 280 AQDRAALEGWEAARAELWAFMNPQTILIGHSLANDLKVL-----------------GMVH 322 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVV---NRHSAIGDAAATAFCFDMLR 180 R+ D + + GL + E LG+ + HS++ DA AT Sbjct: 323 TRIVDSEILTKKAVGPTCKRVWGLKTLCETFLGIRIQAGKKGHSSLEDALATREIVLWCT 382 Query: 181 HTAA 184 Sbjct: 383 KNPE 386 >UniRef50_UPI00017F79C3 YALI0B10824p n=1 Tax=Yarrowia lipolytica RepID=UPI00017F79C3 Length = 184 Score = 84.6 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 54/180 (30%), Gaps = 29/180 (16%) Query: 2 AKQLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 A+ + +D E G+ + V L++ L + V+ E++G Sbjct: 17 AQLYVAIDCEFVGVGPEGAHDQLARVSLVDYFGSVLLD----VFVQGPRPVVDYRTEVSG 72 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + A V + G G + D ++ YS+ S Sbjct: 73 ITPELVQEGV----EFNAARLAVVKLIDGKVLVGHSIKHDLLVLQINWKKYSLRDSQDHR 128 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDM 178 + + + L +A +G+ + HS++ DA A + Sbjct: 129 PFL--------------RRDRPQ----KLKYLARGIGLSIQSGEHSSVEDAQAVMAVYRA 170 >UniRef50_C2M4A1 Exonuclease, RNase T and DNA polymerase III n=2 Tax=Capnocytophaga RepID=C2M4A1_CAPGI Length = 184 Score = 84.6 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 19/188 (10%) Query: 1 MAKQLIVVDLETT---GLDYDTA--LPVEVGLLNVDT--GESLYFVPHITVEQLAAADPK 53 M ++I++DLE T G+ +E+G+ +DT GE + + P Sbjct: 1 MTNKIIIIDLEATCWEGIPPKGEVSEIIEIGICLLDTLTGEVSDNRGILVKPTHSKISPF 60 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 ++ + RE ++ ++ + ++ S +D ++ +Q +P Sbjct: 61 CTQLTTLTPELVAREGVSFEEALQILKK--EYQAYQYTWASYGNYDRNMLQKQCALRKLP 118 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAAT 172 + R ++ + + G+ L +P+V H DA Sbjct: 119 YPMRNEHINVKERFQEVTQH---------PKRLGMHQALNYLKIPLVGTHHRGKDDAYNI 169 Query: 173 AFCFDMLR 180 A L Sbjct: 170 AKIMYKLI 177 >UniRef50_C7QA32 Exonuclease RNase T and DNA polymerase III n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QA32_CATAD Length = 295 Score = 84.6 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 46/162 (28%), Gaps = 15/162 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++L D ETTG D + V L+ D ++ +A I+G Sbjct: 70 RRLAGFDTETTGRDPKSVRIVSAALVTSDG-----AEKAFLIDPGVEIPAEATAIHGITT 124 Query: 63 RGLYREA-LTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPF--SPLT 118 + + LR N +D T++ + + S Sbjct: 125 EYAREHGTEPRRTLDEIADALAAELRAGTPLVVFNAPYDLTLLEAELARNGLTPLASRAP 184 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV 160 V V + D K L+A + GV + Sbjct: 185 VAPVIDPLVIDRQMDKFRK------GARTLEAQCQFYGVTIT 220 >UniRef50_UPI00016EA237 UPI00016EA237 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016EA237 Length = 186 Score = 84.6 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 20/183 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K LI DLETTGL D ++V + + + G+ Sbjct: 1 KTLIFFDLETTGLQTDVCNIIQVSAIC------EGRAFNGYAVPELPLSEHVRNLTGFTV 54 Query: 63 R--GLYREALTEQQT--AVAWGEVQDWLRGNT---FAGSNP-AFDSTIVARQRVTYSMPF 114 LYR + Q D+L N FD+ ++ R + Sbjct: 55 DGPYLYRHGVVMQTLLVKDLLRRFIDYLSQFYCPLLVAHNAERFDAPVIMRVMAENGLLQ 114 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 V + + Y K L A+ + + H+A+ DA Sbjct: 115 RFRQVVSGF------VDTYQLIKRLNPCLPGYSLTALVRQFLGQRFDAHNALEDAKILEK 168 Query: 175 CFD 177 F Sbjct: 169 LFI 171 >UniRef50_B9KV31 Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides KD131 RepID=B9KV31_RHOSK Length = 538 Score = 84.6 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 19/176 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D+ET ++D ++G+ V S+ +T ++G R Sbjct: 217 RFFALDVET--ANHDRGSICQIGVACVRPDSSI--ETWVTYVDPQVDRWVFTYLHGISAR 272 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + +QD L G T + FD + VA + +P Sbjct: 273 TVQGA----PTFSEVLPVLQDALNGATIYQHS-GFDRSAVAAACINCCLPIP-------- 319 Query: 124 HHRLADLAAYAAGKLN-IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 D A + GL ++ + LG+ V H A DA A A Sbjct: 320 QWEWRDSVHVARAAWPELRGNGGHGLASLKQHLGL-VFEHHDAGEDARAAAEVVLH 374 >UniRef50_C5DR59 ZYRO0B05764p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DR59_ZYGRO Length = 268 Score = 84.2 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 23/176 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I +D E G+ + + V+ + ++ + ++G + Sbjct: 97 KFIAIDGEFVGVGPEGKENALARVSLVNYNGYVIMDEYVKPRE--RVVDWRTWVSGIEPK 154 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +V D LR G A D + +A + Sbjct: 155 HMRIAI----DYKEVQQKVADILRDRILVGHAVAHDLSALALKHPR-------------- 196 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVVNR-HSAIGDAAATAFCFD 177 + D + + + + L +A+ LG+ V HS++ DA T + Sbjct: 197 -SMIRDTSLFTPFRKEYAEGKTPSLKKLAKNVLGIDVQEAEHSSVEDAKITMLLYK 251 >UniRef50_C4V0M2 Putative uncharacterized protein n=2 Tax=Selenomonas RepID=C4V0M2_9FIRM Length = 179 Score = 84.2 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 51/181 (28%), Gaps = 15/181 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++++V D ETTG D + + ++N + + A P A IN Sbjct: 2 EKILVFDTETTGFRSD-DEVLTLAVVNGTGETMVD--SMYAPVRKAEW-PDAERINRISP 57 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + G N FD ++A+ + + + Sbjct: 58 AMVADCDPIL-THREELECLFNA-PDTLLVGYNIEFDIRLLAQSGIRITNANRHDVMLAF 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATAFCFDMLR 180 R L AE H A+ D AT FC+ + Sbjct: 116 SAFR-------KVPDARRGGYRWWKLTECAEYYRYDWGTTVAHGALADTLATLFCYRKMS 168 Query: 181 H 181 Sbjct: 169 E 169 >UniRef50_D2QVF1 Exonuclease RNase T and DNA polymerase III n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QVF1_9SPHI Length = 193 Score = 84.2 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 55/192 (28%), Gaps = 19/192 (9%) Query: 4 QLIVVDLETTGLD-----YDTA-----LPVEVGL-LNVDTGESLYFVPHITVEQLAAADP 52 +++D ET GL T + V L + G+ L I + Sbjct: 2 TYLIIDTETNGLPQSYHLPVTDLTNWPRLISVAWGLYDEEGKELCRHYAIVKPDGYRWNK 61 Query: 53 KAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYS 111 A +I+ + Q ++ + + G N D ++ + + Sbjct: 62 VAQQIHRITPEQAETKG---QPLDDVLNQLCPAMERADAWVGHNIDLDYGVIGAEFIRAE 118 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAA 170 L + A E LD + + L G + H A D Sbjct: 119 QRQPGRVGEFPARPVLCTMDVSA---KVTPNREPVRLDELYQLLTGKKMKGMHDASADML 175 Query: 171 ATAFCFDMLRHT 182 AT CF L+ Sbjct: 176 ATVRCFFGLKQR 187 >UniRef50_Q5YSF0 Putative DNA polymerase n=1 Tax=Nocardia farcinica RepID=Q5YSF0_NOCFA Length = 229 Score = 84.2 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 16/156 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L DLETT D +A V ++ VD G+ + +A EI+GY + Sbjct: 7 PLAAFDLETTSADPHSARVVTASIIRVDGGDV--RARNWIANPHIPIPAEATEIHGYTDE 64 Query: 64 GLYREALTEQQ-TAVAWGEVQDWLRGNTFAG-SNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A E+ N +FD T++A ++++ + Sbjct: 65 YVQKHGRPHADVIAEVTAELHACWAEGRCVAVYNGSFDFTVLATHDPSFAVSGLVVDAFV 124 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV 157 + K + L AV GV Sbjct: 125 LDK------------KYDRYRRGSRKLSAVCIHYGV 148 >UniRef50_Q1WA52 Putative uncharacterized protein (Fragment) n=3 Tax=Otophysi RepID=Q1WA52_ICTPU Length = 216 Score = 84.2 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 51/184 (27%), Gaps = 21/184 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + L+ DLETTGL+ V++ ++ ++ + D A + G Sbjct: 31 EETLVFXDLETTGLNTSECDIVQLSAIS------GERSFNVYILPRCPIDHGASRVTGLT 84 Query: 62 ER----GLYREALTEQQTAVAWGEVQDWLRGN---TFAGSNP-AFDSTIVARQRVTYSMP 113 L+ + + A +L+ G N FD I+ R +++ Sbjct: 85 IHSRKLLLHGQPMQTVPLREALTSFISFLKTFSRPVLVGHNCKRFDRPILLRIMTEFNLL 144 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 V D + + + + H A D Sbjct: 145 KEFQDVVS----AYLDTLLLSREMFM---LQKYSQQFLVQYFLQKSYRAHDATEDVRTLQ 197 Query: 174 FCFD 177 F Sbjct: 198 ELFR 201 >UniRef50_Q2S065 DNA helicase II n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S065_SALRD Length = 1084 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 52/185 (28%), Gaps = 18/185 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAM--EING 59 + ++VDLE T D E+G L V G + F + + + AD + + G Sbjct: 687 PEYVMVDLEATSTDPRHCRVAEIGALKVRDGTVVDRFSELVQLPEDLTADERETLRTVCG 746 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLT 118 + + A W + ++ G N +D ++ R T+ Sbjct: 747 LDP---ASDFDEARPEAAVWADFCAFVDGAPLVAHNGQRYDFRVLRRLANTH-------- 795 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVVNRHSAIGDAAATAFCFD 177 H A + E L H A+ D Sbjct: 796 --EADAHWATTYDLLPAAHELFPDLRRYDAAHLRETLLDDDADTAHRALADCEDQQRILA 853 Query: 178 MLRHT 182 ++ Sbjct: 854 RMQEE 858 >UniRef50_Q1Q8L3 Exodeoxyribonuclease X n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1Q8L3_PSYCK Length = 242 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 42/191 (21%) Query: 1 MAKQLIVVDLETT-GLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M +++D ET G D P++V +NV TG F + P + ++G Sbjct: 7 MVDTALIIDTETDQGRDP---RPIQVATINVATG----FEWMKYFNSGRSISPVVIRVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E++ + G N FD ++ Sbjct: 60 ITDDDVAGLERF---------ELEQFELPEYLIGHNVRFDWRVIGSPSAKL--------- 101 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVVN----RHSAIGDAAATA 173 + ++ G E+L H A+GDA Sbjct: 102 ----------ICTVRLARVAFPEWSAYGQSKCIEQLLGKGEASRMTIAAHDALGDARMCY 151 Query: 174 FCFDMLRHTAA 184 + Sbjct: 152 LLYQACCERLE 162 >UniRef50_Q8WTP8 Apoptosis-enhancing nuclease n=42 Tax=Chordata RepID=AEN_HUMAN Length = 325 Score = 83.4 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 21/187 (11%), Positives = 45/187 (24%), Gaps = 28/187 (14%) Query: 1 MAKQLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 + + + +D E G + +++ + + Sbjct: 106 LPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHGDVLYDK----YIRPEMPIADYRTRWS 161 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + + VA E+ L+G G D + Sbjct: 162 GITRQHMRKAV----PFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPR--------- 208 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNR-HSAIGDAAATAF 174 R + + L +A +L + V HS++ DA Sbjct: 209 ----SQTRDTTYVPNFLSEPGLHTRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAME 264 Query: 175 CFDMLRH 181 + L Sbjct: 265 LY-RLVE 270 >UniRef50_Q81AM4 DNA polymerase III, epsilon chain n=71 Tax=Bacillus RepID=Q81AM4_BACCR Length = 281 Score = 83.4 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTAL----PVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEING 59 IV D+E + V++G + ++ G + V+ A ++ G Sbjct: 7 FIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSELVKPSARLTRHTTKLTG 65 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 ++ L + ++ + ++ + S D ++ Y + + Sbjct: 66 ITKKDL----MGVEKFPQIIEKFIQFIGEGSIFVSWGKEDYRFLSHDCTLYGVECPSIEK 121 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDM 178 DL + L E+L + +H A+ DA TA Sbjct: 122 ENR-----IDLQKFVFQAYEELFEHTPSLQFAVEQLALTWEGKQHRALADAENTANILLR 176 >UniRef50_UPI000186E2F9 RNA exonuclease, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E2F9 Length = 262 Score = 83.4 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 28/187 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ +D E + + + L+N V+ + +G E Sbjct: 88 KVVALDCEMVSDLNNQDMLARISLVNFKLECIYDK----YVKPQSKVGDYRTRFSGIREE 143 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A V EV+D L G D ++ Sbjct: 144 NLMNGA----DFEVVRKEVKDLLYNRILVGHALGNDFKVLKFGHHK-------------- 185 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNRHSAIGDAAATAFCFDMLR 180 + D + Y K I+ + L +A+ + H +I DA + R Sbjct: 186 -QLIRDTSKYEPFK-EINDLKSPPLKKLAKMFLNENI-QEGEHDSIEDAKTAMKLYKKFR 242 Query: 181 HTAAAHL 187 L Sbjct: 243 KEWEISL 249 >UniRef50_Q4D4N5 Mitochondrial DNA polymerase I protein B, putative n=5 Tax=Trypanosoma RepID=Q4D4N5_TRYCR Length = 1473 Score = 83.4 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 57/205 (27%), Gaps = 36/205 (17%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L+V D+E+TGL+ T +E+ + V+ A + M I+ + Sbjct: 830 RLVVFDIESTGLNTATDAIIEIAAWDP----VEATSFSSLVDPERAIPQETMAIHHITDG 885 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT----------FAGSNPA-FDSTIVARQRVTYSM 112 + + + +LR + G N D ++ R + Sbjct: 886 MVRGA----PRLPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFEREGV 941 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTE------------LEGLDAVAERLGVPVV 160 + ++ L L A L ++ E L V Sbjct: 942 CMDNI----LFCDSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEGLHVEAD 997 Query: 161 N-RHSAIGDAAATAFCFDMLRHTAA 184 H A DA F A Sbjct: 998 GLLHRADTDAKTLWFVLVNALGLAG 1022 >UniRef50_C5MBT8 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MBT8_CANTT Length = 288 Score = 83.4 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 28/187 (14%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E GL + + + ++N + F + ++G Sbjct: 123 RYISLDCEFVGLGPEGSESAVARISIVNYFG--VVLFDSFVK--PQGKVTDFRTWVSGIE 178 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L A + L+G G D ++ Sbjct: 179 SFHLKDAI----DFKKAQEITGNLLKGKILVGHAIKNDLDML---------------YLS 219 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVV-NRHSAIGDAAATAFCFDML 179 + D + + + I + L +A+ L + + +HS++ DA AT F + Sbjct: 220 HPKSMIRDTSKFKKFR-EIAGGKAPSLKKLAKEFLEIDIQIGKHSSVEDARATMLLFRLF 278 Query: 180 RHTAAAH 186 R + Sbjct: 279 RKEIESA 285 >UniRef50_Q6ADV7 DNA polymerase III, epsilon subunit n=4 Tax=Micrococcineae RepID=Q6ADV7_LEIXX Length = 192 Score = 83.0 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 44/166 (26%), Gaps = 20/166 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEIN 58 M +D ET + A VGL+ V G + + + I+ Sbjct: 1 MTLDFTAIDFET--ANSSAASACSVGLVKVRDGRVVDRSGWLIQPPAGHDEFHEWNVRIH 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + A ++ ++ + N FD ++ Sbjct: 59 GVHPADIAGA----PGWADQLADLVEFCEDDALVAHNAGFDMGVIRAACAA--------- 105 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 R+ L + + E L A A G + H Sbjct: 106 -TRIACPDYRYLCSLQVARRTC--LESYRLPAAALAAGFEDFHHHD 148 >UniRef50_A6WH29 Exonuclease RNase T and DNA polymerase III n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WH29_KINRD Length = 203 Score = 83.0 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 23/174 (13%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D E+T LD VE+ + +V V DP A ++G + L Sbjct: 50 VLLDTESTALD---GQLVEIAITDVHGAPL----FSSLVRPTTPVDPGARAVHGIGDEEL 102 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + +++ L G N FD ++ R+ + Sbjct: 103 QDA----PDLLMVAPQLRAALAGRHVIAYNARFDRGLLRREGERIGVDLLS------STR 152 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + Y + +D L A RL RH A+GD + A + Sbjct: 153 WGCGMHCYTRFRGRVDSRGRH-LR--ASRL---PGARHRAVGDCRSLAEVLQEI 200 >UniRef50_A6G9M5 DNA polymerase III, epsilon subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G9M5_9DELT Length = 389 Score = 83.0 bits (204), Expect = 5e-15, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 51/181 (28%), Gaps = 17/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +DLET D A +GL V G + VE + DP ++G Sbjct: 206 EFVTLDLETANADP--ASVCAMGLATVCEGRLVDAGG-ELVEPQSRFDPVHTRLHGID-- 260 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 R A W + + L G N F + + T+ Sbjct: 261 --RRAVRGVGPFAEHWLPLAEELAGRWVLAHNATFAARCLRALASTFGPGAPAPPRL--- 315 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + L+ +AE G+ RH A A ++ Sbjct: 316 ------LCTLRLARAVWPREPGHALERLAEEFGLSA-PRHDPHAGARCCAELALLMCSLR 368 Query: 184 A 184 Sbjct: 369 G 369 >UniRef50_C7R5J9 DNA polymerase III, epsilon subunit n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R5J9_JONDD Length = 298 Score = 83.0 bits (204), Expect = 5e-15, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 42/157 (26%), Gaps = 16/157 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D+ETTGL +E+ +++ DT ++ + + + Sbjct: 4 YAVIDVETTGLSSRNDRVIELAVVHTDTHGTITGHWETLINPQRNLTAQHIHHI------ 57 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 A ++ L G N FD+ +A + + H Sbjct: 58 HASHIQHAPLFADIATDLLTLLDGRVPVAHNAPFDARFLAAELHRTG---------KTLH 108 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 + L + + L + Sbjct: 109 QQHDFLCTMNLSRRYLPGVGKP-LADCLAATNITNTG 144 >UniRef50_C1YIK4 DNA polymerase III, epsilon subunit n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YIK4_NOCDA Length = 277 Score = 83.0 bits (204), Expect = 5e-15, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 10/161 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGY 60 L+ D ET+ D DTA V L++ + V+ A+ ++G Sbjct: 54 TTPLLGFDTETSSRDPDTAFLVSAALVDREG-----KARTWLVDPGPREIPADAVAVHGI 108 Query: 61 YERGLYREALTEQQ-TAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLT 118 E + + D L N +D +++ + + + Sbjct: 109 STERARAEGRPAGECLEEIGQALADQLSSGQGLVVFNAPYDLRVLSGEMRRHGLTPLAER 168 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV 159 + + L + L A+ E GV + Sbjct: 169 LSGPLAPVVDPLVIDRG--VEPYRRGKRNLGAMCEYYGVEL 207 >UniRef50_B8GE83 Exonuclease RNase T and DNA polymerase III n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GE83_METPE Length = 193 Score = 83.0 bits (204), Expect = 5e-15, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 23/175 (13%) Query: 5 LIVVDLETTGLDYDTA----------LPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPK 53 + D ETTGL VE+G + DT ++ + V + + Sbjct: 2 YLFFDTETTGLPKKKHASMHRVANWPRIVELGWVLTDTKGTVIEEAGLLVRPDGFSVPAE 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSM 112 + I+G + + L + G +FD +V + + M Sbjct: 62 STAIHGITTEQATEQGS---AISEVLARFLLALEQSELICGHQVSFDHRVVGAELIRAGM 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELE--GLDAVAER-LGVPVVNRHS 164 P V ++ R + A + L A+ P H Sbjct: 119 P-----VDQLDKPRFCTMEASKTLNRSATGHSPHPLSLSALYLHLFDEPFAGAHR 168 >UniRef50_A0YUY5 Putative uncharacterized protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YUY5_9CYAN Length = 829 Score = 83.0 bits (204), Expect = 5e-15, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 42/188 (22%), Gaps = 46/188 (24%) Query: 3 KQLIVVDLETTGLDYDTALP--VEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +VVD E + ++ + + I G Sbjct: 2 PDYVVVDTE---GNPLLKEIAVIDSSGILIFEAIVTNSSQSIK--------------TGI 44 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L ++ D ++ + LT+ Sbjct: 45 RVQMLE----------TVLNNFIKVIQNKILVFHYAEHDLKVLYYSFKAAGITPPKLTIR 94 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-------RHSAIGDAAATA 173 W K + L+A+++ L + + H A DA T Sbjct: 95 CTW----------ELSKFYYPRMQSYSLEALSKFLHLKINGKRFNSSLAHRAKYDALFTH 144 Query: 174 FCFDMLRH 181 + L Sbjct: 145 QLYQHLMK 152 >UniRef50_Q2W5J8 DNA polymerase III epsilon subunit and related 3'-5' exonuclease n=11 Tax=Bacteria RepID=Q2W5J8_MAGSA Length = 306 Score = 83.0 bits (204), Expect = 5e-15, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 26/178 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFV--PHITVEQLAAADPKAMEINGY 60 I +DLETTGLD +E+ ++ G + + ++ G Sbjct: 53 IFIDLETTGLDPAKDEIIELAMVPFVYGLDGRIFEIQDAFQGLRQPSNPIPAEITKLTGI 112 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + A N AFD + R ++S Sbjct: 113 TDEMVAGKVIDPAEVA------AFAAPAAIVIAHNAAFDRKFIERFCPSFS-TKPWGCSM 165 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 G L + H A D A Sbjct: 166 SQVDWTGEGFEGTKLGYLLGGFGLFH--------------DGHRATDDCHAAIEILAR 209 >UniRef50_Q5KJQ4 RNA exonuclease 4 n=3 Tax=Eukaryota RepID=REXO4_CRYNE Length = 408 Score = 82.6 bits (203), Expect = 5e-15, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 52/186 (27%), Gaps = 28/186 (15%) Query: 5 LIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +D E G+ + V ++N L + + I+G + Sbjct: 132 YLAIDCEMVGVGPNGMENTLARVSIVNYHGAVILD--TFVQPREP--VTDYRTWISGVKQ 187 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L Q +V + L G D ++ + Sbjct: 188 SDLLGA----PQFDEVNKQVANLLHDKILIGHAIDNDLKVL---------------MLTH 228 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPV-VNRHSAIGDAAATAFCFDMLR 180 D Y + I + GL ++E LGV + HS++ DA + + + Sbjct: 229 PGPLTRDTQKYKPLQ-EIAKNKRPGLKKLSELLLGVQIQTGAHSSVVDARVAMALYRLHK 287 Query: 181 HTAAAH 186 Sbjct: 288 KEWERS 293 >UniRef50_A1ZST4 3'-5' exonuclease eri-1 n=2 Tax=Bacteria RepID=A1ZST4_9SPHI Length = 185 Score = 82.6 bits (203), Expect = 6e-15, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 24/184 (13%) Query: 5 LIVVDLETTGLDYDTALP---VEVGLLNVDTGE--SLYFVPHITVEQLAAADPKAMEING 59 ++VDLE T + +E+G + + F + ++ Sbjct: 3 YVIVDLEATCWETRENRANETIEIGAVCIGNEGKWVDEFDTFVKPVTHPVLSEFCTQLTS 62 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGN-----TFAGSNPAFDSTIVARQRVTYSMPF 114 + + A + Q W+ S +D + +++P Sbjct: 63 ITQEMVDDA----PLFPEALDDFQQWINNCANGDQYVLCSWGYYDRVQFKNDCLLHNLPT 118 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATA 173 L H+ AD+ G+ ++ G+ + H I DA A Sbjct: 119 QWLASHISLKHQYADIKNMRRPI---------GMKKALQKEGLFLSGTHHRGIDDAKNIA 169 Query: 174 FCFD 177 F Sbjct: 170 DIFL 173 >UniRef50_Q4SXK5 Chromosome 15 SCAF12379, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SXK5_TETNG Length = 283 Score = 82.6 bits (203), Expect = 6e-15, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 61/216 (28%), Gaps = 56/216 (25%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++ +D E G+ D V L+N V+ ++G Sbjct: 88 KVVAIDCEMVGVGPDGEDSILARVSLVNQFGKCIYDK----YVKPTERVTDFRTAVSGIR 143 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + ++ EV D L+G T G D I+ + Sbjct: 144 PQDIK----SGEEVKTVQREVADILKGRTVVGHAIHNDLKIL---------------LLD 184 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPV-VNRHSAIG------------ 167 ++ D Y + + + L + L V V HS++ Sbjct: 185 HPKKKIRDTQKYKPFRKAV-QSSRPSLKVLCREILNVKVQEGEHSSVSAFICTSADASVA 243 Query: 168 ----------------DAAATAFCFDMLRHTAAAHL 187 DA AT + M++ A + Sbjct: 244 GCSLSTDLLLCLHQVQDAQATMRLYTMVKKQWEAEI 279 >UniRef50_D1XXS2 Exonuclease n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1XXS2_9BACT Length = 297 Score = 82.6 bits (203), Expect = 6e-15, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 22/180 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAME--INGY 60 + + +D E L+ + EVG++ + + F I E + Sbjct: 2 EFVTIDFE--KLNNEQTSVCEVGMVKYIDQKEVDTFYTTIYPSTGIRVQKGFCEGILKRI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + E++D++ + D + + + Sbjct: 60 TFEKLEN----SPKFPKVYEEMKDFIGDAIIVCHSKGADLNYIYNCEKEFGL-------T 108 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGDAAATAFCFDML 179 ++H+ D + L + + + H A+ DA A L Sbjct: 109 GLYHNGYIDTEEVGKSIKKVG-----SLPDLYKALFHKQLEEHHEALHDALACGKILLSL 163 >UniRef50_Q4Q9U9 Putative uncharacterized protein n=6 Tax=Trypanosomatidae RepID=Q4Q9U9_LEIMA Length = 509 Score = 82.6 bits (203), Expect = 6e-15, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 56/195 (28%), Gaps = 26/195 (13%) Query: 8 VDLETTG-----LDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 D+E TG D T E+GL + E F + P E+ + Sbjct: 93 FDMEFTGPPVFTADGPTEDITELGLYSPLLDE--TFSCLVRPVCGRKQGPGVEELTHITD 150 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNT------------FAGSNPAF-DSTIVARQRVT 109 L RE + AW + +++ D +++ Sbjct: 151 MMLEREGIP---FVEAWQQFLKFVQTPQPDEISGSEERILLLSHGGKLADVSLIKWTLEK 207 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGD 168 + M P V H + D ++ P L + + L +P H A D Sbjct: 208 FHMELPPSFVFGDTIHLIRDAHRRRPVTIDKHP-PSWKLADLVQWLHIPPTLPAHRAGND 266 Query: 169 AAATAF-CFDMLRHT 182 A T + L Sbjct: 267 ARMTWDALYHTLLRY 281 >UniRef50_B3W7U1 DNA polymerase III, alpha subunit (Gram-positive type) n=8 Tax=Lactobacillus RepID=B3W7U1_LACCB Length = 478 Score = 82.2 bits (202), Expect = 8e-15, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 57/178 (32%), Gaps = 17/178 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 IV+D E D + E+ LL V + F + + P +++I G + Sbjct: 274 DYIVIDTEFV-ADRNQLDLTEISLLRVRHHQVDGAFDIFTQLPEDHHVMPFSVKITGITD 332 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + A ++ L+ G + D + + V Sbjct: 333 DLLSQYGQPLPLAKAAVEQL---LKHELVVGFALSNDLRAL-----RAGLNVDITPVQAF 384 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D+AA A I L E LGV + H+A+ DA T + L Sbjct: 385 ------DVAALARKTFGIGKKHTPSLQHYKEALGVDL-PSHTALSDAQTTMALLEHLI 435 >UniRef50_UPI000155C35F PREDICTED: similar to HEM45 n=2 Tax=Mammalia RepID=UPI000155C35F Length = 281 Score = 81.9 bits (201), Expect = 9e-15, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 49/190 (25%), Gaps = 31/190 (16%) Query: 5 LIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +D E GL L+ + + + ++G + Sbjct: 109 VVSLDCEMVGLGPGGHESGLARCSLVGYHGN--VLYDRFVR--PEGTITDYRTRVSGVCK 164 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A A E+ L G G + D + +Y + + Sbjct: 165 EDMKNAT----PFAEAREEILRLLEGKLVVGHDLQHDFEALKADMASYEIYDTSKD---- 216 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN------RHSAIGDAAATAFCF 176 + L + L + N HS++ DA AT + Sbjct: 217 ---------RLLWEVGGLGACRRVSLKVLT--LKILKKNIQTGWSGHSSVEDAKATMELY 265 Query: 177 DMLRHTAAAH 186 + R A Sbjct: 266 KISRKIRARR 275 >UniRef50_Q8KQH6 DNA polymerase III epsilon subunit (Fragment) n=2 Tax=Candidatus Tremblaya princeps RepID=Q8KQH6_TREPR Length = 175 Score = 81.9 bits (201), Expect = 9e-15, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 12/133 (9%) Query: 30 VDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN 89 + G H + A ++G + L T+ + +L G Sbjct: 1 IAGGRITGNYFHSYINPCQRMTRGAQAVHGLRDEFLA----TQPTFGAIAQRLLYFLCGA 56 Query: 90 TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLD 149 G N FD + V+ + + D + A + LD Sbjct: 57 VLVGHNLTFDLNFLDAGLVSAGFMP-----AARYCAGVIDTMLHLAQR---GSRRRFSLD 108 Query: 150 AVAERLGVPVVNR 162 + +RLGV +R Sbjct: 109 DLCDRLGVRRGDR 121 >UniRef50_A7VSN5 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VSN5_9CLOT Length = 293 Score = 81.9 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 56/185 (30%), Gaps = 19/185 (10%) Query: 4 QLIVVDLETTGLDYDT-----ALPVEVGLLNVDTGESLYFVPHITVEQLA--AADPKAME 56 + +++DLE G +E G + V+ + + V+ K Sbjct: 2 EFVILDLEWNGTYSKRKSGFFNEIIEFGAVKVNDRLCVEDTFSVVVKPQIGKKLSSKVKN 61 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 + L A + + +L + D + Y Sbjct: 62 LTNISSEELGLGV----TYTRAVSKFKKFLGNAVLMTWGTS-DILALMENHQYY-----W 111 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAF 174 T + +L ++ ++ + + GL A+ LG+ V H A+ D+ Sbjct: 112 GTDRLDYIEGYVNLQSFCERRVYYERGKQMGLSTAAQLLGIDVQGMEHHRALDDSLLALA 171 Query: 175 CFDML 179 CF L Sbjct: 172 CFRRL 176 >UniRef50_Q0BGF9 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Burkholderia ambifaria AMMD RepID=Q0BGF9_BURCM Length = 276 Score = 81.9 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 30/184 (16%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGL--LNVDTGESLYFV----PHITVEQLAAADPKA 54 + ++ ++D ETTG+ P+ +G+ + ++ G + H E PKA Sbjct: 18 LHMKVAIIDTETTGV-AAHDEPISIGILLVEIEPGSGVLVQEIGRYHGLREPCVPIHPKA 76 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 ++G L + L E + N FD+ ++A Sbjct: 77 QAVHGMTAADLSGKVLDLAWITSLINE------ADVLIAHNAQFDARMLAVVC------- 123 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPT-ELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + W + + + LD+V E GV RH A+GD A Sbjct: 124 -DAGSAKSWRC--------SLQQFPWPAAVGRKKLDSVCEFYGVVKQLRHDALGDCQALL 174 Query: 174 FCFD 177 Sbjct: 175 AVLL 178 >UniRef50_Q4SE72 Chromosome undetermined SCAF14625, whole genome shotgun sequence n=2 Tax=Clupeocephala RepID=Q4SE72_TETNG Length = 228 Score = 81.9 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 21/191 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + L+ DLETTGL +++ ++ ++ V P A ++ G+ Sbjct: 11 QALVFFDLETTGLGSTCD-IIQLAAVS------GGHSLNLYVVPRRPLQPGAAKVTGFRV 63 Query: 63 R----GLYREALTEQQTAVAWGEVQDWLR---GNTFAGSNPA-FDSTIVARQRVTYSMPF 114 R L+R+ + +LR G N FD ++ R + Sbjct: 64 RRRRLYLHRQLVPTNSLREVLVSFIAFLRMLHHPLIVGHNIRRFDGPLLGRVLDELDLRT 123 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPVVNRHSAIGDAAATA 173 + W D + A L + + + E LG+ H A+ D A Sbjct: 124 QFESSVTGW----VDTLSLAQELLRGHNLQNFRQETLVRELLGLD-YRAHDALQDVRALQ 178 Query: 174 FCFDMLRHTAA 184 F L+ TAA Sbjct: 179 ALFGALQPTAA 189 >UniRef50_C6CTA0 Exonuclease RNase T and DNA polymerase III n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTA0_PAESJ Length = 264 Score = 81.9 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 52/186 (27%), Gaps = 15/186 (8%) Query: 4 QLIVVDLETTGLDYDTA---LPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEIN 58 I++D+E G + + +E+G + ++ ++ F I + + + Sbjct: 2 DYIILDIEFNGRKFASDLPMEVIEIGAVRLNADLQQTDIFSSLIKPVYFSKLNSFIKKKT 61 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + + GE +WL F Sbjct: 62 GIPQEEID----IAPKFPRVIGEFINWLDRGEPF---MLFTWG--GEDLKRIVYDTRMHK 112 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFD 177 + + + + T ++A L + H A+ DA TA F Sbjct: 113 LDDAFWLSMDTFDLLKGYLRYKNITNDVSVEAALADLNLVFEGNAHRALDDAIMTADVFR 172 Query: 178 MLRHTA 183 + Sbjct: 173 AIFEHL 178 >UniRef50_UPI000186E025 3'''' histone mRNA exonuclease, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E025 Length = 386 Score = 81.5 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 49/193 (25%), Gaps = 30/193 (15%) Query: 5 LIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPH---ITVEQLAAADPKAMEING 59 +V+D E T + +E + V++ + ME+ G Sbjct: 105 YVVIDFEATCDNKKIDRQEIIEFPAVLVNSKKQKIEDCFRMYCKPRINPKLSQYCMELTG 164 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTF--------AGSNPAFDS-TIVARQRVTY 110 + + + +WL+ + ++ +D + Q Sbjct: 165 ITQEQVDNA----ETFDKVLSHYNNWLKKHNLGTKNKRYAVVTDGNWDMSKFLVSQCHYS 220 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEG--LDAVAERLGVPVVNR-HSAIG 167 ++P N L + E L + + R H + Sbjct: 221 NVPIPKWG---------KTWVNLKKTFKNFYQKGENRICLKTMLEMLNMEFIGRPHCGLD 271 Query: 168 DAAATAFCFDMLR 180 DA A + Sbjct: 272 DAKNIARILLKMI 284 >UniRef50_Q6CE69 RNA exonuclease 4 n=1 Tax=Yarrowia lipolytica RepID=REXO4_YARLI Length = 291 Score = 81.5 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 30/179 (16%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E G+ + A V ++N + ++ + ++G Sbjct: 132 KFIALDCEFVGVGPNGARSILARVSIVNYYGH--VLMDEYVKPIE--RVTDWRTWVSGVT 187 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A V+ L G T G D ++ + + Sbjct: 188 PAMVANGI----SFSEAQERVKRLLNGRTLIGHALINDLAVL-------GLDHPRADIRD 236 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER---LGVPVVNRHSAIGDAAATAFCFD 177 + + L V + L + HS++ DA A F Sbjct: 237 TQKPQYFKTVC---------GCKTPSLKHVMKECVDLNI-QQGEHSSVIDAQAAMLLFR 285 >UniRef50_Q9BQ50 Three prime repair exonuclease 2 n=14 Tax=Mammalia RepID=TREX2_HUMAN Length = 279 Score = 81.1 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 46/197 (23%), Gaps = 20/197 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVD-----TGESLYFVPHITVE----------Q 46 A+ + +DLE TGL E+ L V E + Sbjct: 50 AETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCP 109 Query: 47 LAAADPKAMEINGYYERGLYR---EALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTI 102 KA EI G GL R + N +D + Sbjct: 110 ERPFTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPL 169 Query: 103 VARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPVVN 161 + + TV L L + + L ++ Sbjct: 170 LCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPSA 229 Query: 162 RHSAIGDAAATAFCFDM 178 HSA GD F Sbjct: 230 AHSAEGDVHTLLLIFLH 246 >UniRef50_UPI000174666F hypothetical protein VspiD_20115 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174666F Length = 202 Score = 81.1 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 66/187 (35%), Gaps = 12/187 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +L+V DLETTGLD VE+G + + FV A + +AME+NG Sbjct: 4 EPRLLVTDLETTGLDGRACGIVEIGAVWMLGAG--EFVMKCRPHADAVIEARAMEVNG-C 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWL--RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L T A + +W+ G NP D + + + + Sbjct: 61 DWHLD---PTVAAEVEALEQFVEWVGAGPVILCGQNPRHDLWFLQEGAKRHGLELPFVHR 117 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDM 178 H AYA P + D + E LG+ H A+ A A F M Sbjct: 118 TLDLHTLAV---AYALACGRRVPAKGYYTDEIYELLGMEPEPKPHRALVGAQKEAEAFRM 174 Query: 179 LRHTAAA 185 L A Sbjct: 175 LLGLPEA 181 >UniRef50_C0XQ35 DNA polymerase III epsilon subunit (Exonuclease) n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XQ35_9CORY Length = 189 Score = 81.1 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 47/186 (25%), Gaps = 26/186 (13%) Query: 2 AKQLIVVDLETTG-LDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A + + VD ET L +A +V L+ V + + I+G Sbjct: 15 APEFVTVDFETANRLSPASA--CQVALIKVAGDAVVDQLVTYLRPPEEYIRFDFTHIHGI 72 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFD---STIVARQRVTYSMPFSPL 117 + +V + N FD + T + P Sbjct: 73 ERDTVEH----SPTWYDIADDVHALVGELPVWAHNAPFDAAVWRALDAYYFTGTFPAQFY 128 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFC 175 R + I L VA P + H+A DA A A Sbjct: 129 CTCRT-------------ARRLIPGLRDYRLPTVA-AYCAPTFDLVHHTADSDALACAHI 174 Query: 176 FDMLRH 181 R Sbjct: 175 VGKFRR 180 >UniRef50_UPI000187EE2E hypothetical protein MPER_14994 n=1 Tax=Moniliophthora perniciosa FA553 RepID=UPI000187EE2E Length = 172 Score = 81.1 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 14/156 (8%) Query: 33 GESLYFVPHITVEQ-LAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF 91 G I + + P A++++G + L + +++ +L G+ Sbjct: 2 GNIRPADGSIYLNPEGIPSHPMALQLHGIQDAEL---VAPLPTFSAHAEQLRSFLAGSIM 58 Query: 92 AGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELE--GL 148 G N FD + + + +SP G + + A + L Sbjct: 59 TGYNITKFDLAFLTAEFHRCGITWSPAGEG------IGTIDTLALYRRFRPQEYKRGGKL 112 Query: 149 DAVAERL-GVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + G H+A DA + Sbjct: 113 FSAYLHFVGGWQTQAHNAEADAFTALRLLYAMVEDP 148 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 186 4e-46 UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia ... 180 2e-44 UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostri... 178 8e-44 UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacte... 178 9e-44 UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia... 174 9e-43 UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero... 174 1e-42 UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit... 174 1e-42 UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhod... 173 2e-42 UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 173 2e-42 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 173 3e-42 UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba... 171 7e-42 UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth... 171 8e-42 UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia... 171 9e-42 UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re... 171 9e-42 UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte... 171 1e-41 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 171 1e-41 UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 170 2e-41 UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 T... 169 3e-41 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 169 4e-41 UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili... 168 7e-41 UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Strept... 168 9e-41 UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive... 167 1e-40 UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=... 167 2e-40 UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermane... 167 2e-40 UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu... 166 3e-40 UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 166 4e-40 UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Coryneb... 166 5e-40 UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrh... 165 6e-40 UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Fran... 164 9e-40 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 164 1e-39 UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 164 1e-39 UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=... 164 1e-39 UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu... 164 1e-39 UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=... 164 1e-39 UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para... 164 2e-39 UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha s... 164 2e-39 UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like do... 163 3e-39 UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte... 163 3e-39 UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flav... 162 5e-39 UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actin... 162 5e-39 UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit... 162 5e-39 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 162 6e-39 UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostr... 161 8e-39 UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein... 161 8e-39 UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostri... 161 9e-39 UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacte... 161 1e-38 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 161 1e-38 UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseu... 161 1e-38 UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A... 160 2e-38 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 160 2e-38 UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clost... 160 2e-38 UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacill... 160 3e-38 UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc... 160 3e-38 UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi... 160 3e-38 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 159 4e-38 UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte... 159 5e-38 UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 159 6e-38 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 159 6e-38 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 159 6e-38 UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti... 158 1e-37 UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 158 1e-37 UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo... 158 1e-37 UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ... 158 1e-37 UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli R... 158 1e-37 UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 158 1e-37 UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinom... 157 2e-37 UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostri... 157 2e-37 UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidete... 157 2e-37 UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=A... 157 2e-37 UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult... 157 2e-37 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 156 3e-37 UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flex... 156 3e-37 UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robigin... 156 3e-37 UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquif... 156 3e-37 UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI... 156 3e-37 UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para... 156 3e-37 UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit... 156 4e-37 UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG en... 156 5e-37 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 156 5e-37 UniRef50_C7G8J4 Putative DNA polymerase III, alpha chain n=1 Tax... 155 5e-37 UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asti... 155 7e-37 UniRef50_A9F4T5 DNA polymerase III, epsilon subunit n=1 Tax=Sora... 155 7e-37 UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosm... 155 7e-37 UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy... 154 9e-37 UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholep... 154 1e-36 UniRef50_C0FUI4 Putative uncharacterized protein n=1 Tax=Rosebur... 154 1e-36 UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Euba... 154 1e-36 UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 154 1e-36 UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 154 1e-36 UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridi... 154 1e-36 UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Acti... 154 1e-36 UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostri... 154 1e-36 UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive... 154 2e-36 UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid... 154 2e-36 UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot... 154 2e-36 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 154 2e-36 UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida... 153 2e-36 UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostri... 153 2e-36 UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit... 153 2e-36 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 153 2e-36 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 153 2e-36 UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alterom... 153 3e-36 UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida... 153 3e-36 UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 153 3e-36 UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococ... 153 3e-36 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 153 3e-36 UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacte... 153 3e-36 UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenib... 153 4e-36 UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob... 152 5e-36 UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 152 5e-36 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 152 6e-36 UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinom... 152 7e-36 UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1... 152 7e-36 UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus Re... 151 8e-36 UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cell... 151 8e-36 UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 151 1e-35 UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax... 151 1e-35 UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polyme... 151 1e-35 UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidob... 151 1e-35 UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 151 1e-35 UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostri... 151 2e-35 UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 151 2e-35 UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bactero... 151 2e-35 UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exon... 150 2e-35 UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capn... 150 2e-35 UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum cen... 150 2e-35 UniRef50_C6WZM7 DNA polymerase III epsilon subunit n=2 Tax=Flavo... 150 2e-35 UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha ... 150 3e-35 UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamm... 150 3e-35 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 149 3e-35 UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrot... 149 3e-35 UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capn... 149 3e-35 UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodo... 149 3e-35 UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bact... 149 3e-35 UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atop... 149 4e-35 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 149 4e-35 UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemma... 149 4e-35 UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2 149 4e-35 UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=... 149 4e-35 UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ... 149 4e-35 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 149 4e-35 UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bact... 149 4e-35 UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Bur... 149 5e-35 UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 149 6e-35 UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brev... 149 6e-35 UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bac... 149 6e-35 UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caul... 149 6e-35 UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphi... 148 7e-35 UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Trepon... 148 8e-35 UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit... 148 9e-35 UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphi... 148 9e-35 UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonel... 148 1e-34 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 148 1e-34 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 148 1e-34 UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodoth... 147 1e-34 UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit... 147 2e-34 UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algorip... 147 2e-34 UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gamm... 147 2e-34 UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Beta... 147 2e-34 UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lo... 147 2e-34 UniRef50_B3R0A4 DNA polymerase III alpha subunit n=1 Tax=Candida... 147 2e-34 UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-rel... 147 2e-34 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 147 2e-34 UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=... 147 2e-34 UniRef50_A4C086 DNA polymerase III subunit n=2 Tax=Polaribacter ... 146 2e-34 UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostri... 146 3e-34 UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gam... 146 3e-34 UniRef50_Q11G58 DNA polymerase III, epsilon subunit n=1 Tax=Chel... 146 3e-34 UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 146 3e-34 UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrog... 146 3e-34 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 146 3e-34 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 146 3e-34 UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo... 146 3e-34 UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helic... 146 4e-34 UniRef50_Q3AAH9 Putative DNA polymerase III, epsilon subunit n=1... 146 4e-34 UniRef50_C6CYA2 DNA polymerase III, epsilon subunit n=2 Tax=Baci... 146 4e-34 UniRef50_C5B532 DNA polymerase III epsilon subunit n=1 Tax=Methy... 146 4e-34 UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit... 146 4e-34 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 146 4e-34 UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1... 146 4e-34 UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria ... 146 4e-34 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 146 5e-34 UniRef50_A0M2M5 Exonuclease family protein n=1 Tax=Gramella fors... 146 5e-34 UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 146 5e-34 UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alph... 145 6e-34 UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuring... 145 7e-34 UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ... 145 7e-34 UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, pu... 145 7e-34 UniRef50_B9XHY8 DNA-directed DNA polymerase n=1 Tax=bacterium El... 145 7e-34 UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propion... 145 8e-34 UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 144 9e-34 UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive... 144 1e-33 UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clost... 144 1e-33 UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidob... 144 1e-33 UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xyla... 144 1e-33 UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synerg... 144 1e-33 UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut ... 144 1e-33 UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydr... 144 1e-33 UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia ... 144 1e-33 UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio cross... 144 2e-33 UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51... 144 2e-33 UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruege... 144 2e-33 UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alp... 144 2e-33 UniRef50_C3RPR6 3'-5' exonuclease n=2 Tax=Bacteria RepID=C3RPR6_... 144 2e-33 UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kord... 144 2e-33 UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 143 2e-33 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 143 2e-33 UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucl... 143 2e-33 UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlam... 143 2e-33 UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Pro... 143 2e-33 UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiacea... 143 3e-33 UniRef50_C8RRD8 Exonuclease n=2 Tax=Corynebacterium jeikeium Rep... 143 3e-33 UniRef50_Q04EX4 3'-5' exonuclease domain and Rad3-related DNA he... 143 3e-33 UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micr... 143 3e-33 UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerof... 143 3e-33 UniRef50_Q67M39 DNA polymerase III-like protein n=1 Tax=Symbioba... 143 4e-33 UniRef50_C7RR73 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 143 4e-33 UniRef50_C0WGE7 Possible exonuclease n=2 Tax=Corynebacterium Rep... 142 5e-33 UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Deth... 142 5e-33 UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Nei... 142 5e-33 UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothio... 142 6e-33 UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2... 142 6e-33 UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Beta... 142 6e-33 UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Fl... 142 6e-33 UniRef50_A8TQX4 DNA polymerase III, epsilon subunit n=1 Tax=alph... 142 7e-33 UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ... 142 8e-33 UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chro... 142 8e-33 UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acid... 141 8e-33 UniRef50_B1VHF1 Putative exonuclease n=1 Tax=Corynebacterium ure... 141 8e-33 UniRef50_C5VCF0 Exonuclease family protein n=2 Tax=Corynebacteri... 141 8e-33 UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0... 141 8e-33 UniRef50_Q3K0L7 Exonuclease, DNA polymerase III, epsilon subunit... 141 8e-33 UniRef50_A5IJS5 DNA polymerase III, epsilon subunit n=6 Tax=Ther... 141 9e-33 UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 141 9e-33 UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc Re... 141 9e-33 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 141 9e-33 UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=... 141 1e-32 UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidob... 141 1e-32 UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-posit... 141 1e-32 UniRef50_A0PN08 DNA polymerase n=1 Tax=Mycobacterium ulcerans Ag... 141 1e-32 UniRef50_B0UD78 DNA polymerase III, epsilon subunit n=5 Tax=Alph... 141 1e-32 UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 141 1e-32 UniRef50_A4U2R7 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 141 1e-32 UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_... 141 1e-32 UniRef50_Q48KX3 DNA polymerase III, epsilon subunit n=35 Tax=Pro... 141 1e-32 UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinob... 141 1e-32 UniRef50_A3V111 Exonuclease, DNA polymerase III, epsilon subunit... 141 2e-32 UniRef50_C3XME5 DNA polymerase III subunit epsilon n=1 Tax=Helic... 141 2e-32 UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Strep... 140 2e-32 UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex... 140 2e-32 UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1... 140 2e-32 UniRef50_C9NHS4 DNA polymerase III, epsilon subunit n=2 Tax=Stre... 140 2e-32 UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphyloco... 140 2e-32 UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dich... 140 3e-32 UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Pro... 140 3e-32 UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 139 3e-32 UniRef50_A4SZE6 DNA polymerase III, epsilon subunit n=1 Tax=Poly... 139 3e-32 UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, e... 139 3e-32 UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydroge... 139 4e-32 UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplas... 139 4e-32 UniRef50_Q2VYH6 DNA polymerase III, epsilon subunit and related ... 139 4e-32 UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacte... 139 4e-32 UniRef50_C9RIR1 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 139 4e-32 UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam... 139 4e-32 UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive... 139 4e-32 UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=1... 139 5e-32 UniRef50_C3RQT5 DNA polymerase III subunit epsilon n=1 Tax=Molli... 139 5e-32 UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anap... 139 5e-32 UniRef50_C1QET6 Exonuclease, DNA polymerase III, epsilon subunit... 139 5e-32 UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neor... 139 6e-32 UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1... 138 7e-32 UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gam... 138 7e-32 UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachl... 138 7e-32 UniRef50_D1WX09 DNA polymerase III, epsilon subunit n=17 Tax=Str... 138 8e-32 UniRef50_B6FWT9 Putative uncharacterized protein n=1 Tax=Clostri... 138 8e-32 UniRef50_Q6MIB4 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 138 9e-32 UniRef50_B9L0P4 DNA polymerase III epsilon subunit n=1 Tax=Therm... 138 9e-32 UniRef50_A5IU60 Exonuclease, RNase T and DNA polymerase III n=64... 138 1e-31 UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macroco... 138 1e-31 UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Bur... 138 1e-31 UniRef50_C8P2F2 Gram-positive family DNA polymerase III, alpha c... 138 1e-31 UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Rose... 138 1e-31 UniRef50_C8NPX3 DNA polymerase III epsilon subunit n=5 Tax=Coryn... 138 1e-31 UniRef50_C5EZ00 DNA polymerase III subunit epsilon n=2 Tax=Helic... 138 1e-31 UniRef50_C4GLS9 Putative uncharacterized protein n=1 Tax=Kingell... 138 1e-31 UniRef50_B8R965 Putative DNA polymerase III epsilon subunit (Fra... 137 2e-31 UniRef50_Q9K6I8 BH3741 protein n=1 Tax=Bacillus halodurans RepID... 137 2e-31 UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysi... 137 2e-31 UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolb... 137 2e-31 UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycopla... 137 2e-31 UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acid... 137 2e-31 UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromon... 137 2e-31 UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class... 137 2e-31 UniRef50_D2BQ89 DNA polymerase III, epsilon chain n=4 Tax=Lactoc... 137 2e-31 UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus ... 136 3e-31 UniRef50_C6IVA0 DNA polymerase III n=1 Tax=Paenibacillus sp. ora... 136 3e-31 UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubr... 136 3e-31 UniRef50_C8SCL6 DNA polymerase III, epsilon subunit n=1 Tax=Ferr... 136 3e-31 UniRef50_Q315G7 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 136 3e-31 UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia i... 136 3e-31 UniRef50_C2H7V1 Possible DNA polymerase III subunit epsilon n=5 ... 136 3e-31 UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Delt... 136 4e-31 UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma... 136 4e-31 UniRef50_Q0EZC1 Probable DNA polymerase III (Epsilon chain) prot... 136 4e-31 UniRef50_C0XS38 DNA polymerase III epsilon subunit n=1 Tax=Coryn... 136 4e-31 UniRef50_C5VD41 DNA polymerase III epsilon subunit n=2 Tax=Coryn... 136 5e-31 UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae ... 136 5e-31 UniRef50_Q3SKJ9 DNA polymerase III, epsilon subunit n=4 Tax=Prot... 136 5e-31 UniRef50_UPI0001B583F7 DNA polymerase III n=2 Tax=Streptomyces R... 135 6e-31 UniRef50_A4CKG8 DNA polymerase III, epsilon subunit n=1 Tax=Robi... 135 6e-31 UniRef50_A8LH88 Exonuclease RNase T and DNA polymerase III n=2 T... 135 6e-31 UniRef50_B4AHF2 DNA polymerase III PolC-type (PolIII) n=1 Tax=Ba... 135 8e-31 UniRef50_Q15SW9 Exonuclease, RNase T and DNA polymerase III n=1 ... 135 8e-31 UniRef50_D0L0M1 DNA polymerase III, epsilon subunit n=1 Tax=Halo... 135 8e-31 UniRef50_B1I645 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 135 9e-31 UniRef50_A9HX18 Putative exonuclease n=1 Tax=Bordetella petrii D... 135 9e-31 UniRef50_B8EEZ7 DNA polymerase III, epsilon subunit n=2 Tax=Shew... 135 9e-31 UniRef50_D2RB05 CRISPR-associated endoribonuclease Cas2 n=2 Tax=... 134 1e-30 UniRef50_Q2SSE0 DNA polymerase III, alpha subunit, Gram-positive... 134 1e-30 UniRef50_Q03C57 3'-5' exonuclease and CRISPR-associated protein ... 134 1e-30 UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rick... 134 1e-30 UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=... 134 1e-30 UniRef50_D1NTJ1 DNA polymerase III PolC-type n=1 Tax=Bifidobacte... 134 1e-30 UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 134 1e-30 UniRef50_Q1V197 DNA polymerase III n=3 Tax=Candidatus Pelagibact... 134 1e-30 UniRef50_A4X9Y0 DNA polymerase III, epsilon subunit n=6 Tax=Acti... 134 2e-30 UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclass... 134 2e-30 UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 133 2e-30 UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeu... 133 2e-30 UniRef50_A9BFB1 DNA polymerase III, epsilon subunit n=1 Tax=Petr... 133 3e-30 UniRef50_A6GRM1 DNA polymerase III subunit epsilon n=1 Tax=Limno... 133 3e-30 UniRef50_B3RU88 Putative uncharacterized protein n=1 Tax=Trichop... 133 3e-30 UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA po... 133 3e-30 UniRef50_C0ECE2 Putative uncharacterized protein n=1 Tax=Clostri... 133 3e-30 UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flav... 133 4e-30 UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobac... 132 4e-30 UniRef50_C4XFQ7 Putative uncharacterized protein n=1 Tax=Mycopla... 132 4e-30 UniRef50_UPI0001AEDE41 DNA polymerase III n=2 Tax=Streptomyces R... 132 4e-30 UniRef50_Q03AH5 DNA polymerase III, epsilon subunit related 3'-5... 132 4e-30 UniRef50_A4T616 DNA polymerase III, epsilon subunit n=11 Tax=Myc... 132 5e-30 UniRef50_C0QPN1 DNA polymerase III subunit epsilon n=1 Tax=Perse... 132 5e-30 UniRef50_C9XLH5 Putative DNA polymerase III, epsilon chain n=5 T... 132 5e-30 UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Strepto... 132 5e-30 UniRef50_Q8EUK5 DNA polymerase III subunit alpha n=1 Tax=Mycopla... 132 6e-30 UniRef50_B9JXT6 DNA polymerase III epsilon subunit-like 3-5 exon... 132 6e-30 UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=5... 132 6e-30 UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseu... 132 6e-30 UniRef50_C5F3P4 DNA polymerase III n=1 Tax=Lactobacillus paracas... 132 7e-30 UniRef50_A1KUV1 DNA polymerase III, epsilon chain n=18 Tax=Neiss... 132 7e-30 UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 T... 132 7e-30 UniRef50_D2L4P4 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 131 9e-30 UniRef50_A6WGD9 DNA polymerase III, epsilon subunit n=1 Tax=Kine... 131 9e-30 UniRef50_B6IRC5 3'-5' exonuclease n=2 Tax=Alphaproteobacteria Re... 131 1e-29 UniRef50_Q6Q234 Putative uncharacterized protein n=1 Tax=uncultu... 131 1e-29 UniRef50_C4DV08 DNA polymerase III epsilon subunit-like 3'-5' ex... 131 1e-29 UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria Rep... 131 1e-29 UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lact... 131 1e-29 UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1... 131 1e-29 UniRef50_P47729 DNA polymerase III polC-type n=1 Tax=Mycoplasma ... 131 1e-29 UniRef50_Q1NJL0 DNA polymerase III, epsilon subunit n=1 Tax=delt... 131 1e-29 UniRef50_C5CEK5 DNA polymerase III, epsilon subunit n=1 Tax=Kosm... 131 2e-29 UniRef50_C0GM30 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 131 2e-29 UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=... 131 2e-29 UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchn... 130 2e-29 UniRef50_D1B3F1 DNA polymerase III, epsilon subunit n=1 Tax=Sulf... 130 2e-29 UniRef50_C1XKD8 DNA polymerase III, alpha subunit (Gram-positive... 130 2e-29 UniRef50_Q4K5K3 Exonuclease n=3 Tax=Gammaproteobacteria RepID=Q4... 130 2e-29 UniRef50_B2KEE3 DNA polymerase III, epsilon subunit n=1 Tax=Elus... 130 2e-29 UniRef50_A8F6Z7 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 130 2e-29 UniRef50_D2PY06 Exonuclease RNase T and DNA polymerase III n=1 T... 130 2e-29 UniRef50_A4U4S6 DNA polymerase III epsilon chain-like protein n=... 130 2e-29 UniRef50_B1I518 DNA-directed DNA polymerase n=1 Tax=Candidatus D... 130 2e-29 UniRef50_C9RIV2 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 130 2e-29 UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 fam... 130 2e-29 UniRef50_Q2SPW2 Putative exonuclease n=2 Tax=Hahella chejuensis ... 129 3e-29 UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DS... 129 3e-29 UniRef50_A6QC85 DNA polymerase III, epsilon subunit n=1 Tax=Sulf... 129 3e-29 UniRef50_B0TF42 DNA polymerase iii polc-type n=1 Tax=Heliobacter... 129 4e-29 UniRef50_UPI000196B395 hypothetical protein CATMIT_00376 n=1 Tax... 129 4e-29 UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular or... 129 4e-29 UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit... 129 4e-29 UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 129 4e-29 UniRef50_Q6NGF2 Putative DNA polymerase III epsilon subunit n=1 ... 129 4e-29 UniRef50_Q0SVV0 Helicase/exonuclease n=12 Tax=Clostridium RepID=... 129 4e-29 UniRef50_UPI000196AD91 hypothetical protein CATMIT_00292 n=1 Tax... 129 5e-29 UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop... 129 5e-29 UniRef50_D0RQR6 DNA polymerase III PolC-type (PolIII) n=1 Tax=al... 129 5e-29 UniRef50_A8ET44 DNA polymerase III n=1 Tax=Arcobacter butzleri R... 129 5e-29 UniRef50_C2MC99 Exonuclease n=3 Tax=Bacteroidales RepID=C2MC99_9... 129 5e-29 UniRef50_C6SPJ4 DNA polymerase III alpha subunit n=1 Tax=Strepto... 129 5e-29 UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candi... 129 5e-29 UniRef50_Q2B6U9 Putative uncharacterized protein n=1 Tax=Bacillu... 129 6e-29 UniRef50_A7K086 DNA polymerase III epsilon subunit n=22 Tax=Vibr... 129 6e-29 UniRef50_B2A7J4 DNA polymerase III, epsilon subunit n=1 Tax=Natr... 128 7e-29 UniRef50_B0RTE6 DNA polymerase III epsilon chain n=11 Tax=Proteo... 128 8e-29 UniRef50_A6Q1S7 DNA polymerase III, epsilon subunit n=2 Tax=Epsi... 128 9e-29 UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd... 128 1e-28 UniRef50_C0N4N3 Exonuclease superfamily n=1 Tax=Methylophaga thi... 128 1e-28 UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokd... 127 1e-28 UniRef50_A7HHL1 Exonuclease RNase T and DNA polymerase III n=1 T... 127 1e-28 UniRef50_C0Z5S3 Putative uncharacterized protein n=1 Tax=Breviba... 127 1e-28 UniRef50_D2QAZ6 DnaQ DNA polymerase III alpha subunit n=4 Tax=Bi... 127 2e-28 UniRef50_A6CHW6 DNA polymerase III, alpha subunit n=1 Tax=Bacill... 127 2e-28 UniRef50_C9Z7X4 Putative exonuclease n=1 Tax=Streptomyces scabie... 127 2e-28 UniRef50_B8G6F9 DNA polymerase III, epsilon subunit n=3 Tax=Chlo... 127 2e-28 UniRef50_Q8D3D2 DnaQ protein n=1 Tax=Wigglesworthia glossinidia ... 127 2e-28 UniRef50_A1SNC5 Exonuclease, RNase T and DNA polymerase III n=1 ... 127 2e-28 UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 ... 127 2e-28 UniRef50_C9R9F3 DNA-directed DNA polymerase n=1 Tax=Ammonifex de... 127 2e-28 UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alic... 127 2e-28 UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit... 127 2e-28 UniRef50_B4WSD0 Exonuclease family n=1 Tax=Synechococcus sp. PCC... 127 2e-28 UniRef50_C6UMV7 Putative DNA polymerase III, epsilon subunit n=1... 127 2e-28 UniRef50_A1Y2U5 Transposase n=2 Tax=Bacteria RepID=A1Y2U5_9BACT 127 2e-28 UniRef50_B4RBF9 DNA polymerase III epsilon chain n=3 Tax=Alphapr... 127 2e-28 UniRef50_UPI000185C325 putative DNA polymerase III epsilon subun... 127 3e-28 UniRef50_A9FIM8 Exonuclease n=1 Tax=Sorangium cellulosum 'So ce ... 126 3e-28 UniRef50_Q31RN6 Exonuclease n=2 Tax=Synechococcus elongatus RepI... 126 3e-28 UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Cam... 126 3e-28 UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase... 126 3e-28 UniRef50_C6RD51 Mature parasite-infected erythrocyte surface ant... 126 4e-28 UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria... 126 4e-28 UniRef50_UPI0000D530A7 DNA polymerase III subunit epsilon n=1 Ta... 126 4e-28 UniRef50_A9VZJ3 Exonuclease RNase T and DNA polymerase III n=7 T... 126 4e-28 UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactoba... 126 4e-28 UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins... 126 4e-28 UniRef50_Q4ZCJ2 ORF013 n=5 Tax=root RepID=Q4ZCJ2_9CAUD 126 4e-28 UniRef50_Q1PZU3 Strongly similar DNA polymerase epsilon subunit ... 126 4e-28 UniRef50_C2BJB2 DNA polymerase III subunit epsilon n=1 Tax=Coryn... 126 4e-28 UniRef50_B5FC60 DNA polymerase III subunit epsilon n=58 Tax=Vibr... 126 4e-28 UniRef50_C3XF27 DNA polymerase III subunit epsilon n=1 Tax=Helic... 126 5e-28 UniRef50_B1GYV2 DNA polymerase III epsilon subunit n=1 Tax=uncul... 126 5e-28 UniRef50_A9AZA6 DNA polymerase III, epsilon subunit n=1 Tax=Herp... 126 5e-28 UniRef50_A8VVX5 DNA polymerase III alpha subunit (Gram-positive ... 126 5e-28 UniRef50_D2EP63 DNA polymerase III, epsilon subunit/ATP-dependen... 126 5e-28 UniRef50_Q7VGH4 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7... 126 5e-28 UniRef50_C8WHL0 Exonuclease RNase T and DNA polymerase III n=1 T... 125 6e-28 UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge... 125 6e-28 UniRef50_B2Q2X9 Putative uncharacterized protein n=1 Tax=Provide... 125 7e-28 UniRef50_D0WQJ6 Exonuclease, DNA polymerase III, epsilon subunit... 125 7e-28 UniRef50_Q0BM06 DNA-directed DNA polymerase n=20 Tax=Francisella... 125 8e-28 UniRef50_B7GKX3 Exonuclease n=2 Tax=Bacillaceae RepID=B7GKX3_ANOFW 125 8e-28 UniRef50_A5CE47 DNA polymerase III epsilon chain n=2 Tax=Orienti... 125 8e-28 UniRef50_C8P6J0 Putative uncharacterized protein n=1 Tax=Lactoba... 125 9e-28 UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotom... 125 9e-28 UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit ... 124 1e-27 UniRef50_C4LI81 Putative uncharacterized protein n=1 Tax=Coryneb... 124 1e-27 UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC21... 124 1e-27 UniRef50_B6XU67 Putative uncharacterized protein n=2 Tax=Bifidob... 124 1e-27 UniRef50_B0ADG9 Putative uncharacterized protein n=1 Tax=Clostri... 124 1e-27 UniRef50_B5JQE7 Exonuclease, DNA polymerase III, epsilon subunit... 124 1e-27 UniRef50_Q47S15 Exonuclease n=3 Tax=Nocardiopsaceae RepID=Q47S15... 124 1e-27 UniRef50_A3ZH56 DNA polymerase III n=1 Tax=Campylobacter jejuni ... 124 1e-27 UniRef50_B2GAN1 DNA-directed DNA polymerase III epsilon subunit ... 124 1e-27 UniRef50_D1C533 Exonuclease RNase T and DNA polymerase III n=1 T... 124 1e-27 UniRef50_A5UUT9 DNA polymerase III, epsilon subunit n=4 Tax=Chlo... 124 1e-27 UniRef50_B9L5N4 DNA polymerase III PolC-type n=1 Tax=Nautilia pr... 124 1e-27 UniRef50_P96171 DNA for Na+/glucose symporter, n=1 Tax=Vibrio pa... 124 2e-27 UniRef50_O29290 DNA polymerase III, subunit epsilon (DnaQ) n=1 T... 124 2e-27 UniRef50_C9ZG17 Putative DNA polymerase III, epsilon chain (EC 2... 124 2e-27 UniRef50_D1BFD5 DNA polymerase III epsilon subunit-like 3'-5' ex... 124 2e-27 UniRef50_C8X5R2 Exonuclease RNase T and DNA polymerase III n=1 T... 123 2e-27 UniRef50_Q2KXB5 Putative exonuclease n=4 Tax=Bordetella RepID=Q2... 123 2e-27 UniRef50_A0L6G9 Exonuclease, RNase T and DNA polymerase III n=1 ... 123 2e-27 UniRef50_A8ES54 DNA polymerase III, epsilon subunit n=4 Tax=Epsi... 123 3e-27 UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface ant... 123 3e-27 UniRef50_B9CLN3 Putative exonuclease, RNase T and DNA polymerase... 123 3e-27 UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Dein... 123 3e-27 UniRef50_C6NVW4 DNA polymerase III epsilon subunit n=1 Tax=Acidi... 123 3e-27 UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Coryn... 123 3e-27 UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla... 123 3e-27 UniRef50_A1TXA3 Exonuclease, RNase T and DNA polymerase III n=8 ... 123 3e-27 UniRef50_C2JRY7 DNA polymerase III, epsilon subunit n=3 Tax=Ente... 122 4e-27 UniRef50_Q7UJ56 Probable DNA polymerase III polC-type n=1 Tax=Rh... 122 4e-27 UniRef50_Q3SMK3 Exonuclease n=1 Tax=Thiobacillus denitrificans A... 122 4e-27 UniRef50_D1BL33 Exonuclease RNase T and DNA polymerase III n=3 T... 122 5e-27 UniRef50_Q482N7 DNA polymerase III, epsilon subunit n=1 Tax=Colw... 122 5e-27 UniRef50_A9NGM6 DNA polymerase III, epsilon subunit n=1 Tax=Acho... 122 5e-27 UniRef50_A4ASW0 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 122 5e-27 UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 2313... 122 5e-27 UniRef50_Q47ME2 Exonuclease n=1 Tax=Thermobifida fusca YX RepID=... 122 5e-27 UniRef50_Q1QYX2 Exonuclease n=2 Tax=Gammaproteobacteria RepID=Q1... 122 5e-27 UniRef50_B8HW82 UvrD/REP helicase n=1 Tax=Cyanothece sp. PCC 742... 122 7e-27 UniRef50_B3XRZ2 DNA polymerase III, epsilon subunit n=1 Tax=Lact... 122 7e-27 UniRef50_D1C750 Exonuclease RNase T and DNA polymerase III n=1 T... 122 7e-27 UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma ... 122 7e-27 UniRef50_A3Q8X5 Exonuclease, RNase T and DNA polymerase III n=6 ... 122 8e-27 UniRef50_D0IFC0 DNA polymerase III epsilon subunit n=1 Tax=Vibri... 122 8e-27 UniRef50_A6D4K1 DNA polymerase III subunit epsilon n=1 Tax=Vibri... 121 9e-27 UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine m... 121 9e-27 UniRef50_A1VJH5 Exonuclease, RNase T and DNA polymerase III n=8 ... 121 9e-27 UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atop... 121 9e-27 UniRef50_B0UN90 Exonuclease RNase T and DNA polymerase III n=3 T... 121 1e-26 UniRef50_A3J795 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 121 1e-26 UniRef50_B9ZJP8 Exonuclease RNase T and DNA polymerase III n=1 T... 121 1e-26 UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collins... 121 1e-26 UniRef50_UPI0001C41BCD exonuclease n=1 Tax=Methanobrevibacter ru... 121 1e-26 UniRef50_A4WYE4 Transposase and inactivated derivatives-like pro... 121 1e-26 UniRef50_D1W3Q1 DNA polymerase III subunit epsilon domain protei... 121 1e-26 UniRef50_C4VNH6 DNA polymerase III n=4 Tax=Lactobacillus jenseni... 121 1e-26 UniRef50_C4XRC4 DNA polymerase III epsilon subunit n=1 Tax=Desul... 121 1e-26 UniRef50_B8F0B3 Exonuclease RNase T and DNA polymerase III n=2 T... 121 1e-26 UniRef50_A8VW12 S-adenosylmethionine decarboxylase related n=1 T... 121 1e-26 UniRef50_C7M082 Exonuclease RNase T and DNA polymerase III n=1 T... 121 1e-26 UniRef50_C9KN36 Helicase, UvrD/REP/exonuclease family protein n=... 121 1e-26 UniRef50_Q3B459 DNA polymerase III, epsilon subunit n=8 Tax=Chlo... 121 1e-26 UniRef50_A0Y5B9 DNA polymerase III subunit epsilon n=1 Tax=Alter... 121 1e-26 UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2... 121 2e-26 UniRef50_A6DK72 DNA polymerase III n=1 Tax=Lentisphaera araneosa... 121 2e-26 UniRef50_Q4A745 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 121 2e-26 UniRef50_B5YGV6 DNA polymerase III alpha subunit n=1 Tax=Thermod... 121 2e-26 UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase II... 121 2e-26 UniRef50_A7GA16 Exonuclease, DNA polymerase III, epsilon subunit... 120 2e-26 UniRef50_C6HVS0 DNA polymerase III, epsilon subunit n=1 Tax=Lept... 120 2e-26 UniRef50_Q5E1T7 DNA polymerase III, epsilon-subunit paralog (3' ... 120 2e-26 UniRef50_Q1QRC1 Exonuclease n=1 Tax=Nitrobacter hamburgensis X14... 120 2e-26 UniRef50_B5XKK7 DNA polymerase III, epsilon subunit/ATP-dependen... 120 3e-26 UniRef50_B6WSP3 Putative uncharacterized protein n=1 Tax=Desulfo... 120 3e-26 UniRef50_A0JY37 Exonuclease, RNase T and DNA polymerase III n=4 ... 120 3e-26 UniRef50_B5JTW6 Exonuclease, RNase T and DNA polymerase III n=1 ... 120 3e-26 UniRef50_Q1MYK1 DNA polymerase III subunit epsilon n=2 Tax=Gamma... 119 4e-26 UniRef50_C6X498 DNA polymerase III subunit epsilon n=1 Tax=Flavo... 119 4e-26 UniRef50_D1XX28 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1XX2... 119 4e-26 UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales... 119 4e-26 UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D09... 119 5e-26 UniRef50_B5YGW1 DNA polymerase III PolC-type, putative n=1 Tax=T... 119 5e-26 UniRef50_B7A7M2 DNA-directed DNA polymerase n=3 Tax=Thermus RepI... 119 6e-26 UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=... 119 6e-26 UniRef50_Q10MN9 Os03g0301400 protein n=4 Tax=Poaceae RepID=Q10MN... 119 6e-26 UniRef50_D0WP21 Putative DNA polymerase III epsilon subunit n=1 ... 119 6e-26 UniRef50_A7GZ66 Nickel transport permease component NikD n=5 Tax... 118 7e-26 UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID... 118 8e-26 UniRef50_A4B904 DNA polymerase III subunit epsilon n=1 Tax=Reine... 118 8e-26 UniRef50_A7A5A0 Putative uncharacterized protein n=1 Tax=Bifidob... 118 8e-26 UniRef50_Q0J9Z9 Os04g0623400 protein n=4 Tax=Oryza sativa RepID=... 118 8e-26 UniRef50_A6DBG1 DNA polymerase III subunit epsilon n=1 Tax=Camin... 118 8e-26 UniRef50_Q04DG0 DNA polymerase III, epsilon subunit or related 3... 118 9e-26 UniRef50_O67875 Putative uncharacterized protein n=1 Tax=Aquifex... 118 1e-25 UniRef50_C9PT90 Putative uncharacterized protein n=1 Tax=Prevote... 118 1e-25 UniRef50_Q2FLJ5 Exonuclease n=1 Tax=Methanospirillum hungatei JF... 118 1e-25 UniRef50_Q2NHS5 Predicted 3'-5' exonuclease n=1 Tax=Methanosphae... 118 1e-25 UniRef50_C2PKV5 DNA polymerase III subunit epsilon n=1 Tax=Bacil... 118 1e-25 UniRef50_B7V8D9 Probable nuclease n=6 Tax=Pseudomonas aeruginosa... 118 1e-25 UniRef50_A1TZ29 DNA polymerase III, epsilon subunit n=3 Tax=Mari... 117 1e-25 UniRef50_Q1JYJ5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 117 1e-25 UniRef50_C1YLW5 DNA polymerase III epsilon subunit-like 3'-5' ex... 117 1e-25 UniRef50_B6JP45 DNA polymerase III epsilon subunit n=17 Tax=Heli... 117 1e-25 UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostr... 117 1e-25 UniRef50_B9F7W0 Putative uncharacterized protein n=3 Tax=Poaceae... 117 1e-25 UniRef50_D1U8F3 Exonuclease RNase T and DNA polymerase III n=1 T... 117 1e-25 UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB5... 117 1e-25 UniRef50_D2ATQ8 DNA polymerase III epsilon subunit and related 3... 117 1e-25 UniRef50_D0L8D9 Exonuclease RNase T and DNA polymerase III n=2 T... 117 2e-25 UniRef50_C9PB04 DNA polymerase III epsilon subunit n=1 Tax=Vibri... 117 2e-25 UniRef50_C5WML0 Putative uncharacterized protein Sb01g037840 n=1... 117 2e-25 UniRef50_Q3ILF6 Putative DNA polymerase, exonuclease activity n=... 117 2e-25 UniRef50_C1YMP7 DNA polymerase III epsilon subunit-like 3'-5' ex... 117 2e-25 UniRef50_D0Z0S6 DNA polymerase III epsilon subunit n=1 Tax=Photo... 117 2e-25 UniRef50_C9LHX7 Exonuclease n=1 Tax=Prevotella tannerae ATCC 512... 117 2e-25 UniRef50_Q1N3V9 Exonuclease n=1 Tax=Bermanella marisrubri RepID=... 117 2e-25 UniRef50_A3Y5Y0 Exonuclease n=1 Tax=Marinomonas sp. MED121 RepID... 117 2e-25 UniRef50_Q041D1 DNA polymerase III, alpha subunit (Gram-positive... 117 3e-25 UniRef50_D0JBJ5 DNA polymerase III subunit epsilon n=1 Tax=Blatt... 116 3e-25 UniRef50_A4IMY1 Putative uncharacterized protein n=1 Tax=Geobaci... 116 3e-25 UniRef50_C2D7T6 3'-5' exonuclease and CRISPR-associated Cas2 fam... 116 3e-25 UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate divisio... 116 3e-25 UniRef50_Q6LGI0 Putative DNA polymerase III n=1 Tax=Photobacteri... 116 4e-25 UniRef50_C1SJH8 DNA polymerase III epsilon subunit-like 3'-5' ex... 116 4e-25 UniRef50_D2Q9U9 DNA polymerase III, epsilon subunit n=2 Tax=Bifi... 116 4e-25 UniRef50_B4TI94 Exonuclease n=2 Tax=root RepID=B4TI94_SALHS 116 4e-25 UniRef50_Q2QCR8 Putative uncharacterized protein n=1 Tax=Pseudom... 116 5e-25 UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteo... 116 5e-25 UniRef50_C2KP37 DNA polymerase III epsilon subunit n=3 Tax=Mobil... 116 5e-25 UniRef50_B8J155 Exonuclease RNase T and DNA polymerase III n=1 T... 116 5e-25 UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 T... 116 6e-25 UniRef50_A6W3F5 Exonuclease RNase T and DNA polymerase III n=2 T... 116 6e-25 UniRef50_A7I1F1 DNA polymerase III subunit epsilon n=1 Tax=Campy... 116 6e-25 UniRef50_B1JN65 Exonuclease RNase T and DNA polymerase III n=4 T... 115 6e-25 UniRef50_Q1QZ77 Exonuclease n=1 Tax=Chromohalobacter salexigens ... 115 6e-25 UniRef50_Q05FQ3 DNA polymerase III epsilon subunit n=1 Tax=Candi... 115 7e-25 UniRef50_C5V7D5 Exonuclease RNase T and DNA polymerase III n=1 T... 115 8e-25 UniRef50_C6W9X5 Exonuclease RNase T and DNA polymerase III n=1 T... 115 8e-25 UniRef50_Q9K697 BH3832 protein n=4 Tax=Bacillus RepID=Q9K697_BACHD 115 9e-25 UniRef50_Q4V274 Possible exonuclease n=3 Tax=Bacillus cereus Rep... 114 1e-24 UniRef50_C7LT45 Exonuclease RNase T and DNA polymerase III n=4 T... 114 1e-24 UniRef50_Q057S0 DNA polymerase III, e subunit n=1 Tax=Buchnera a... 114 1e-24 UniRef50_P41060 Uncharacterized exonuclease CP81 n=12 Tax=root R... 114 1e-24 UniRef50_C1D0R4 Putative DNA-directed DNA polymerase (DNA polyme... 114 1e-24 UniRef50_D1J1T2 Whole genome shotgun sequence of line PN40024, s... 114 1e-24 UniRef50_C9LN05 DNA polymerase III PolC-type n=1 Tax=Dialister i... 114 1e-24 UniRef50_A3UR50 DNA polymerase III, epsilon chain n=6 Tax=Vibrio... 114 2e-24 UniRef50_Q7MCI1 DNA polymerase III, epsilon subunit n=6 Tax=Vibr... 114 2e-24 UniRef50_A5U937 DNA polymerase III subunit epsilon DnaQ n=20 Tax... 114 2e-24 UniRef50_Q11Z63 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 114 2e-24 UniRef50_D0I9Y6 DNA polymerase III epsilon subunit n=1 Tax=Grimo... 114 2e-24 UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group... 114 2e-24 UniRef50_C0WBN5 Putative uncharacterized protein n=1 Tax=Acidami... 114 2e-24 UniRef50_C8NL81 DNA polymerase III, epsilon subunit n=7 Tax=Cory... 113 2e-24 UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus... 113 2e-24 UniRef50_C0YRX4 Possible DNA-directed DNA polymerase III n=1 Tax... 113 3e-24 UniRef50_B9NP01 Exonuclease n=1 Tax=Rhodobacteraceae bacterium K... 113 3e-24 UniRef50_Q6UAU3 Gp39 n=1 Tax=Klebsiella phage phiKO2 RepID=Q6UAU... 113 3e-24 UniRef50_A6DRG8 Putative exonuclease n=1 Tax=Lentisphaera araneo... 113 3e-24 UniRef50_UPI0001BC4EA4 exonuclease n=4 Tax=Fusobacterium RepID=U... 113 3e-24 UniRef50_A9RDT8 Predicted protein n=6 Tax=Eukaryota RepID=A9RDT8... 113 3e-24 UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitroso... 113 3e-24 UniRef50_C6P477 DNA polymerase III, epsilon subunit n=1 Tax=Side... 113 3e-24 UniRef50_C5SA67 Exonuclease RNase T and DNA polymerase III n=1 T... 113 3e-24 UniRef50_C8WSI6 Exonuclease RNase T and DNA polymerase III n=2 T... 113 4e-24 UniRef50_D0RQQ0 DNA polymerase III, epsilon subunit n=1 Tax=alph... 112 4e-24 UniRef50_C6XW17 Exonuclease RNase T and DNA polymerase III n=74 ... 112 4e-24 UniRef50_D0B846 Exonuclease n=51 Tax=Alphaproteobacteria RepID=D... 112 5e-24 UniRef50_A4HKS0 Exonuclease-like protein (Dna polymerase iii eps... 112 5e-24 UniRef50_UPI0001AF0A70 hypothetical protein AbauAB_10367 n=1 Tax... 112 5e-24 UniRef50_A3QFI6 Exonuclease, RNase T and DNA polymerase III n=5 ... 112 5e-24 UniRef50_Q9ZX22 Gp57 n=2 Tax=unclassified Siphoviridae RepID=Q9Z... 112 5e-24 UniRef50_C2G0Y5 DNA polymerase III, epsilon subunit n=8 Tax=Bact... 112 5e-24 UniRef50_A1S5S6 DNA polymerase III epsilon subunit-related 3'-5'... 112 6e-24 UniRef50_B1YF69 Exonuclease RNase T and DNA polymerase III n=2 T... 112 6e-24 UniRef50_B2WGV1 RNA exonuclease 4 n=2 Tax=Pleosporineae RepID=B2... 112 6e-24 UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus cap... 112 6e-24 UniRef50_Q30Q47 Exonuclease n=1 Tax=Sulfurimonas denitrificans D... 112 7e-24 UniRef50_A4C923 Putative DNA polymerase, exonuclease activity n=... 112 7e-24 UniRef50_Q4WHF8 RNA exonuclease 4 n=47 Tax=Fungi/Metazoa group R... 112 7e-24 UniRef50_Q4UJH2 DNA polymerase III, epsilon subunit-like protein... 112 7e-24 UniRef50_C9S192 Exonuclease RNase T and DNA polymerase III n=6 T... 112 7e-24 UniRef50_Q7NC15 PolC n=1 Tax=Mycoplasma gallisepticum RepID=Q7NC... 112 8e-24 UniRef50_D1VY91 UvrD/REP helicase n=1 Tax=Prevotella timonensis ... 112 8e-24 UniRef50_Q6MC14 Putative DNA polymerase III, epsilon chain, mutD... 112 8e-24 UniRef50_A3WQA1 3'-5' exonuclease n=1 Tax=Idiomarina baltica OS1... 111 9e-24 UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammapr... 111 9e-24 UniRef50_A3HVK4 DNA polymerase III, epsilon subunit n=1 Tax=Algo... 111 9e-24 UniRef50_Q1QDN3 Exonuclease n=3 Tax=Psychrobacter RepID=Q1QDN3_P... 111 9e-24 UniRef50_B6BKX7 Exonuclease n=1 Tax=Campylobacterales bacterium ... 111 9e-24 UniRef50_C1GVI3 RNA exonuclease n=1 Tax=Paracoccidioides brasili... 111 9e-24 UniRef50_Q0CHU1 RNA exonuclease 4 n=5 Tax=Eukaryota RepID=Q0CHU1... 111 9e-24 UniRef50_C0QMS3 Predicted type III DNA polymerase PolC n=1 Tax=D... 111 1e-23 UniRef50_A3EQH5 DNA polymerase III, epsilon subunit n=2 Tax=Lept... 111 1e-23 UniRef50_A8L7F0 Exonuclease RNase T and DNA polymerase III n=1 T... 111 1e-23 UniRef50_D2MNZ8 Exonuclease n=1 Tax=Bulleidia extructa W1219 Rep... 111 1e-23 UniRef50_Q2BJ82 DNA polymerase III subunit epsilon n=1 Tax=Neptu... 111 1e-23 UniRef50_C5NYM3 ATP-dependent helicase DinG homolog n=1 Tax=Geme... 111 1e-23 UniRef50_B5ETC4 DNA polymerase III, epsilon chain n=2 Tax=Vibrio... 111 1e-23 UniRef50_UPI000194CE9E PREDICTED: hypothetical protein n=1 Tax=T... 111 1e-23 UniRef50_B9YE07 Putative uncharacterized protein n=1 Tax=Holdema... 111 1e-23 UniRef50_B4WXR6 Exonuclease superfamily n=1 Tax=Alcanivorax sp. ... 111 1e-23 UniRef50_C1XFI0 DNA polymerase III epsilon subunit-like 3'-5' ex... 111 1e-23 UniRef50_B0G161 DNA polymerase III, epsilon subunit n=1 Tax=Dict... 111 1e-23 UniRef50_Q682U6 Putative uncharacterized protein At5g26940 n=3 T... 111 2e-23 UniRef50_Q2RWQ8 Exonuclease n=1 Tax=Rhodospirillum rubrum ATCC 1... 111 2e-23 UniRef50_C1E3S8 Exonuclease (Fragment) n=1 Tax=Micromonas sp. RC... 111 2e-23 UniRef50_C2UN60 Exonuclease n=4 Tax=Bacillus cereus group RepID=... 111 2e-23 UniRef50_Q89MS5 Blr4117 protein n=1 Tax=Bradyrhizobium japonicum... 111 2e-23 UniRef50_Q08237 RNA exonuclease 4 n=12 Tax=Saccharomycetaceae Re... 111 2e-23 UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium... 111 2e-23 UniRef50_D0I3G5 Putative exonuclease n=1 Tax=Grimontia hollisae ... 111 2e-23 UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinel... 110 2e-23 UniRef50_Q4IEV5 RNA exonuclease 4 n=6 Tax=Sordariomyceta RepID=R... 110 2e-23 UniRef50_B1BYN4 Putative uncharacterized protein n=1 Tax=Clostri... 110 2e-23 UniRef50_D0B757 DNA polymerase III n=38 Tax=Brucellaceae RepID=D... 110 2e-23 UniRef50_Q04A97 DNA polymerase III, epsilon subunit related 3'-5... 110 2e-23 UniRef50_A1TI45 DNA-directed DNA polymerase n=4 Tax=Burkholderia... 110 2e-23 UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae ... 110 2e-23 UniRef50_D2VB97 Predicted protein n=1 Tax=Naegleria gruberi RepI... 110 3e-23 UniRef50_A7SLH3 Predicted protein n=1 Tax=Nematostella vectensis... 110 3e-23 UniRef50_C5BKW5 Putative exonuclease n=1 Tax=Teredinibacter turn... 110 3e-23 UniRef50_C5YG62 Putative uncharacterized protein Sb06g028980 n=1... 110 3e-23 UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L... 109 3e-23 UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas ... 109 4e-23 UniRef50_D1W6A9 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1W6A... 109 4e-23 UniRef50_B0UJH8 Exonuclease RNase T and DNA polymerase III n=2 T... 109 4e-23 UniRef50_Q01D40 Xpmc2 protein (ISS) n=2 Tax=Mamiellales RepID=Q0... 109 4e-23 UniRef50_UPI000185C08E DNA polymerase III epsilon subunit n=1 Ta... 109 5e-23 UniRef50_Q2Q0H1 Putative DNA polymerase type III, exonuclease do... 109 5e-23 UniRef50_Q0VMJ4 Nuclease, putative n=1 Tax=Alcanivorax borkumens... 109 5e-23 UniRef50_Q47RH7 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 109 5e-23 UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xa... 109 5e-23 UniRef50_D1Y3R1 Putative DNA polymerase III PolC-type (PolIII) n... 109 6e-23 UniRef50_A0KJY7 DNA polymerase III, epsilon subunit n=2 Tax=Aero... 109 6e-23 UniRef50_B9KV46 Exonuclease n=1 Tax=Rhodobacter sphaeroides KD13... 109 7e-23 UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter as... 109 7e-23 UniRef50_A6GQ42 DNA polymerase III subunit epsilon n=1 Tax=Limno... 109 7e-23 UniRef50_A3KH10 Interferon stimulated exonuclease gene 20-like 2... 109 7e-23 UniRef50_A1SRL7 Exonuclease, RNase T and DNA polymerase III n=1 ... 108 8e-23 UniRef50_A2PLZ2 Gp39 n=2 Tax=Vibrio cholerae RepID=A2PLZ2_VIBCH 108 8e-23 UniRef50_A0JYL8 DNA polymerase III, epsilon subunit n=8 Tax=Micr... 108 8e-23 UniRef50_C0GGY8 Exonuclease RNase T and DNA polymerase III n=1 T... 108 9e-23 UniRef50_C0WKD3 DNA polymerase III epsilon subunit n=5 Tax=Coryn... 108 9e-23 UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacter... 108 1e-22 UniRef50_Q2W5M2 DNA polymerase III, epsilon subunit and related ... 108 1e-22 UniRef50_A7HF37 Exonuclease RNase T and DNA polymerase III n=10 ... 108 1e-22 UniRef50_D1PSL1 Putative DNA polymerase III, epsilon subunit n=1... 108 1e-22 UniRef50_C9LQ99 Exonuclease n=1 Tax=Dialister invisus DSM 15470 ... 108 1e-22 UniRef50_Q8NQY3 DNA polymerase III epsilon subunit and related 3... 107 1e-22 UniRef50_B8HX99 Exonuclease RNase T and DNA polymerase III n=2 T... 107 1e-22 UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 107 1e-22 UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 107 1e-22 UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepI... 107 1e-22 UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 T... 107 2e-22 UniRef50_UPI00015B42FE PREDICTED: hypothetical protein n=1 Tax=N... 107 2e-22 UniRef50_A5CX11 DNA polymerase III epsilon subunit n=2 Tax=sulfu... 107 2e-22 UniRef50_A4A420 Exonuclease family n=3 Tax=unclassified Gammapro... 107 2e-22 UniRef50_Q4PER6 RNA exonuclease 4 n=2 Tax=Eukaryota RepID=REXO4_... 107 2e-22 UniRef50_Q6BIK6 RNA exonuclease 4 n=4 Tax=Saccharomycetaceae Rep... 107 2e-22 UniRef50_C1AA06 Exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27... 107 2e-22 UniRef50_UPI000044938D PREDICTED: hypothetical protein n=2 Tax=G... 107 2e-22 UniRef50_Q47TJ3 DNA polymerase III, epsilon subunit n=10 Tax=Act... 107 2e-22 UniRef50_Q31GK8 Exonuclease n=8 Tax=Bacteria RepID=Q31GK8_THICR 107 2e-22 UniRef50_Q084B5 Exonuclease, RNase T and DNA polymerase III n=8 ... 107 2e-22 UniRef50_C3WAY8 Predicted protein n=1 Tax=Fusobacterium mortifer... 107 2e-22 UniRef50_C0W0V1 DNA polymerase III subunit epsilon n=1 Tax=Actin... 107 2e-22 UniRef50_C1BLC6 Interferon-stimulated 20 kDa exonuclease-like 2 ... 107 2e-22 UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacte... 107 2e-22 UniRef50_C6XJL2 Exonuclease RNase T and DNA polymerase III n=1 T... 107 2e-22 UniRef50_A5FFY1 Exonuclease, RNase T and DNA polymerase III n=1 ... 107 2e-22 UniRef50_C7RVE9 Exonuclease RNase T and DNA polymerase III n=1 T... 107 2e-22 UniRef50_C4QBU0 Rex4-related (Xpmc2) n=1 Tax=Schistosoma mansoni... 107 2e-22 UniRef50_B8NVL3 RNA exonuclease, putative n=2 Tax=Aspergillus Re... 107 3e-22 UniRef50_C7U038 Putative uncharacterized protein n=1 Tax=Ostreoc... 107 3e-22 UniRef50_UPI0001B53E3D DNA polymerase III subunit epsilon n=1 Ta... 107 3e-22 UniRef50_A1U7Q5 Exonuclease, RNase T and DNA polymerase III n=1 ... 107 3e-22 UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacte... 107 3e-22 UniRef50_C8PWB9 DNA polymerase III subunit epsilon n=1 Tax=Enhyd... 106 3e-22 UniRef50_C0VTT8 DNA polymerase III epsilon subunit (Exonuclease)... 106 3e-22 UniRef50_C0NP89 RNA exonuclease n=11 Tax=Onygenales RepID=C0NP89... 106 3e-22 UniRef50_A7K3S7 DNA polymerase III, alpha subunit n=8 Tax=Vibrio... 106 3e-22 UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=... 106 3e-22 UniRef50_B2A6Q7 Exonuclease RNase T and DNA polymerase III n=1 T... 106 4e-22 UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacte... 106 4e-22 UniRef50_C8NWG5 DNA polymerase III, epsilon subunit n=1 Tax=Cory... 106 4e-22 UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacte... 106 4e-22 UniRef50_A9CIB7 DNA polymerase III, epsilon subunit n=4 Tax=Alph... 106 4e-22 UniRef50_Q1ZEA2 DNA polymerase III, epsilon chain n=1 Tax=Psychr... 106 5e-22 UniRef50_B5X4Q1 RNA exonuclease 4 n=1 Tax=Salmo salar RepID=B5X4... 106 5e-22 UniRef50_Q6VY79 Putative uncharacterized protein n=1 Tax=Strepto... 106 5e-22 UniRef50_UPI0001B52926 exonuclease, RNase T and DNA polymerase I... 106 5e-22 UniRef50_Q2S3Z9 Exonuclease, putative n=1 Tax=Salinibacter ruber... 106 6e-22 UniRef50_D1BPK1 UvrD/REP helicase n=3 Tax=Veillonella RepID=D1BP... 106 6e-22 UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellu... 106 6e-22 UniRef50_UPI0000E474E4 PREDICTED: hypothetical protein n=1 Tax=S... 106 6e-22 UniRef50_A0Y7J9 Putative exonuclease n=1 Tax=marine gamma proteo... 105 7e-22 UniRef50_Q3JDE1 Exonuclease n=4 Tax=Gammaproteobacteria RepID=Q3... 105 7e-22 UniRef50_B0PH29 Putative uncharacterized protein n=1 Tax=Anaerot... 105 7e-22 UniRef50_Q15YI0 Exonuclease, RNase T and DNA polymerase III n=1 ... 105 8e-22 UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3X... 105 8e-22 UniRef50_Q7S9B7 RNA exonuclease 4 n=1 Tax=Neurospora crassa RepI... 105 8e-22 UniRef50_Q1J224 Exonuclease domain in DNA-polymerase alpha and e... 105 8e-22 UniRef50_Q7PQ12 AGAP005050-PA n=1 Tax=Anopheles gambiae RepID=Q7... 105 8e-22 UniRef50_UPI0001C34DC4 sporulation inhibitor KapD n=1 Tax=Clostr... 105 9e-22 UniRef50_A4RTZ6 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 105 9e-22 UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Ente... 105 9e-22 UniRef50_O64348 Gp41 n=3 Tax=root RepID=O64348_BPN15 105 1e-21 UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus ... 104 1e-21 UniRef50_C6X5Z0 DNA polymerase III alpha subunit n=1 Tax=Flavoba... 104 1e-21 UniRef50_Q6A708 Putative DNA polymerase III epsilon subunit (Exo... 104 1e-21 UniRef50_A8QYU9 DNA polymerase III subunit epsilon n=3 Tax=Legio... 104 1e-21 UniRef50_Q5A3Q0 RNA exonuclease 4 n=3 Tax=Candida RepID=REXO4_CANAL 104 1e-21 UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidico... 104 1e-21 UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae... 104 2e-21 UniRef50_Q5TYH8 AGAP012826-PA n=2 Tax=Culicidae RepID=Q5TYH8_ANOGA 104 2e-21 UniRef50_Q8KQK8 DNA polymerase III epsilon subunit (Fragment) n=... 104 2e-21 UniRef50_Q12PE3 Ribonuclease T n=157 Tax=Gammaproteobacteria Rep... 104 2e-21 UniRef50_B4RRS4 Putative DNA polymerase, exonuclease activity n=... 104 2e-21 UniRef50_C2S1I6 DnaQ family exonuclease/DinG family helicase n=3... 104 2e-21 UniRef50_Q4E271 Exonuclease, putative n=1 Tax=Trypanosoma cruzi ... 104 2e-21 UniRef50_D2B9E4 DNA-directed DNA polymerase n=1 Tax=Streptospora... 104 2e-21 UniRef50_D0U233 Putative exonuclease n=1 Tax=Clavibacter phage C... 104 2e-21 UniRef50_Q8EDA7 Exonuclease n=1 Tax=Shewanella oneidensis RepID=... 104 2e-21 UniRef50_B2K016 Exonuclease RNase T and DNA polymerase III n=2 T... 104 2e-21 UniRef50_B4SAW0 Exonuclease RNase T and DNA polymerase III n=2 T... 104 2e-21 UniRef50_UPI00005842D2 PREDICTED: hypothetical protein n=2 Tax=S... 103 2e-21 UniRef50_UPI000180BB0F PREDICTED: similar to MGC131088 protein n... 103 2e-21 UniRef50_UPI000192786A PREDICTED: similar to predicted protein n... 103 2e-21 UniRef50_Q854A2 Gp164 n=1 Tax=Mycobacterium phage Omega RepID=Q8... 103 2e-21 UniRef50_UPI000186E2F9 RNA exonuclease, putative n=1 Tax=Pedicul... 103 2e-21 UniRef50_UPI0001AEBC71 putative DNA polymerase, exonuclease acti... 103 3e-21 UniRef50_Q9H9L3 Interferon-stimulated 20 kDa exonuclease-like 2 ... 103 3e-21 UniRef50_Q5QUI3 3'-5' exonuclease n=1 Tax=Idiomarina loihiensis ... 103 3e-21 UniRef50_Q0F2C4 DNA polymerase III subunit epsilon n=1 Tax=Marip... 103 3e-21 UniRef50_B0UVN4 Exonuclease RNase T and DNA polymerase III n=2 T... 103 3e-21 UniRef50_C7Z8F6 Predicted protein n=1 Tax=Nectria haematococca m... 103 3e-21 UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 103 3e-21 UniRef50_B9FK06 Putative uncharacterized protein n=1 Tax=Oryza s... 103 3e-21 UniRef50_Q9VUC3 CG6833 n=1 Tax=Drosophila melanogaster RepID=Q9V... 103 4e-21 UniRef50_UPI0001C31300 Exonuclease RNase T and DNA polymerase II... 103 4e-21 UniRef50_B9JNT5 Polymerase epsilon subunit protein n=1 Tax=Agrob... 103 4e-21 UniRef50_A7HLA2 DNA polymerase III, epsilon subunit n=3 Tax=Ther... 102 4e-21 UniRef50_B8DPI8 Exonuclease RNase T and DNA polymerase III n=1 T... 102 4e-21 UniRef50_A8SRC5 Putative uncharacterized protein n=2 Tax=Clostri... 102 4e-21 UniRef50_O94375 RNA exonuclease 4 n=1 Tax=Schizosaccharomyces po... 102 4e-21 UniRef50_B4QJK2 GD14476 n=11 Tax=Drosophila RepID=B4QJK2_DROSI 102 4e-21 UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochm... 102 4e-21 UniRef50_B9L7I4 Exonuclease family n=2 Tax=Nautiliaceae RepID=B9... 102 5e-21 UniRef50_Q63ZS9 LOC494737 protein n=5 Tax=Euteleostomi RepID=Q63... 102 5e-21 UniRef50_Q4D4F6 Exonuclease, putative n=1 Tax=Trypanosoma cruzi ... 102 5e-21 UniRef50_B5K1P1 Exonuclease n=4 Tax=Octadecabacter antarcticus R... 102 5e-21 UniRef50_D0ZEQ2 Orf81 bacteriophage 186 n=1 Tax=Edwardsiella tar... 102 5e-21 UniRef50_UPI0000DB6C62 PREDICTED: similar to XPMC2 prevents mito... 102 6e-21 UniRef50_A4HVE4 Mitochondrial DNA polymerase I protein B, putati... 102 6e-21 UniRef50_D1ZK43 Whole genome shotgun sequence assembly, scaffold... 102 6e-21 UniRef50_A5Z7C9 Putative uncharacterized protein n=1 Tax=Eubacte... 102 6e-21 UniRef50_C5WTF0 Putative uncharacterized protein Sb01g029940 n=3... 102 6e-21 UniRef50_A4TY99 DNA polymerase III, epsilon subunit and related ... 102 7e-21 UniRef50_UPI0001925D67 PREDICTED: similar to Interferon-stimulat... 102 7e-21 UniRef50_A9VVI2 Exonuclease RNase T and DNA polymerase III n=1 T... 102 7e-21 UniRef50_C8NL35 DNA polymerase III, epsilon subunit n=20 Tax=Cor... 102 7e-21 UniRef50_A5E1X8 RNA exonuclease 4 n=1 Tax=Lodderomyces elongispo... 102 7e-21 UniRef50_A6CY65 DNA polymerase III, epsilon subunit n=1 Tax=Vibr... 102 8e-21 UniRef50_Q9GZR2 RNA exonuclease 4 n=22 Tax=Eukaryota RepID=REXO4... 102 8e-21 UniRef50_A1RGY9 Exonuclease, RNase T and DNA polymerase III n=20... 102 8e-21 UniRef50_C9PFC2 DNA polymerase III epsilon subunit n=2 Tax=Vibri... 102 9e-21 UniRef50_C4JR78 Predicted protein n=1 Tax=Uncinocarpus reesii 17... 101 9e-21 UniRef50_B1WBN4 REX4, RNA exonuclease 4 homolog (S. cerevisiae) ... 101 9e-21 UniRef50_D1HJW3 Whole genome shotgun sequence of line PN40024, s... 101 9e-21 UniRef50_A7B402 Putative uncharacterized protein n=1 Tax=Ruminoc... 101 1e-20 UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellul... 101 1e-20 UniRef50_UPI000186E025 3'''' histone mRNA exonuclease, putative ... 101 1e-20 UniRef50_A6GP03 Exonuclease n=1 Tax=Limnobacter sp. MED105 RepID... 101 1e-20 UniRef50_C7YKG5 Predicted protein n=1 Tax=Nectria haematococca m... 101 1e-20 UniRef50_Q6ML77 DNA polymerase III polC-type n=1 Tax=Bdellovibri... 101 1e-20 UniRef50_Q5KJQ4 RNA exonuclease 4 n=3 Tax=Eukaryota RepID=REXO4_... 101 1e-20 UniRef50_D0JAY7 DNA polymerase III subunit alpha n=2 Tax=Blattab... 101 1e-20 UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteria... 101 1e-20 UniRef50_UPI0001B4C718 DNA polymerase III subunit epsilon n=1 Ta... 101 1e-20 UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphapr... 101 1e-20 UniRef50_C5V7N5 Exonuclease RNase T and DNA polymerase III n=1 T... 101 1e-20 UniRef50_Q6DEW6 RNA exonuclease 4 n=3 Tax=Euteleostomi RepID=REX... 101 1e-20 UniRef50_B6JWR3 RNA exonuclease n=1 Tax=Schizosaccharomyces japo... 101 2e-20 UniRef50_A6VT55 Exonuclease RNase T and DNA polymerase III n=1 T... 101 2e-20 UniRef50_C8PWE0 Exonuclease, Ycg4D n=1 Tax=Enhydrobacter aerosac... 101 2e-20 UniRef50_B9ZRI9 Ribonuclease T n=3 Tax=Gammaproteobacteria RepID... 101 2e-20 UniRef50_D2QID7 Exonuclease RNase T and DNA polymerase III n=2 T... 101 2e-20 UniRef50_Q4V7K3 MGC115620 protein n=5 Tax=Tetrapoda RepID=Q4V7K3... 101 2e-20 UniRef50_C3Z6U1 Putative uncharacterized protein n=1 Tax=Branchi... 101 2e-20 UniRef50_A9CEN2 Polymerase epsilon subunit n=5 Tax=cellular orga... 101 2e-20 UniRef50_A4AJM3 DNA polymerase III subunit epsilon n=4 Tax=Actin... 101 2e-20 UniRef50_B9J6H2 Bacteriophage 186 Orf81-like protein n=1 Tax=Bac... 100 2e-20 UniRef50_C5MBT8 Putative uncharacterized protein n=1 Tax=Candida... 100 2e-20 UniRef50_A4B9Q7 Putative DNA polymerase, exonuclease activity n=... 100 2e-20 UniRef50_C2M4A1 Exonuclease, RNase T and DNA polymerase III n=2 ... 100 2e-20 UniRef50_Q5NWQ5 Putative exonuclease n=1 Tax=Aromatoleum aromati... 100 2e-20 UniRef50_B2V1C6 Exonuclease, RNase T and DNA polymerase III n=5 ... 100 2e-20 UniRef50_A1WUZ8 Ribonuclease T n=10 Tax=Gammaproteobacteria RepI... 100 3e-20 UniRef50_Q9HIG3 Putative uncharacterized protein Ta1376 n=1 Tax=... 100 3e-20 UniRef50_B3S2Z3 Putative uncharacterized protein n=2 Tax=Trichop... 100 3e-20 UniRef50_B8H5Y8 DNA polymerase III epsilon-like protein n=2 Tax=... 100 3e-20 UniRef50_C6JNE1 Exonuclease RNase T and DNA polymerase III n=2 T... 100 3e-20 UniRef50_B9Z8P9 Exonuclease RNase T and DNA polymerase III n=3 T... 100 3e-20 UniRef50_Q28W63 Exonuclease n=5 Tax=Rhodobacterales RepID=Q28W63... 100 3e-20 UniRef50_C1BVW9 RNA exonuclease 4 n=2 Tax=Caligidae RepID=C1BVW9... 100 3e-20 UniRef50_A9KDF1 Ribonuclease T n=5 Tax=Coxiella burnetii RepID=A... 100 4e-20 UniRef50_C5R9G6 Putative uncharacterized protein n=1 Tax=Weissel... 99 5e-20 UniRef50_D1B7G9 Exonuclease RNase T and DNA polymerase III n=1 T... 99 5e-20 UniRef50_C5YXX8 Putative uncharacterized protein Sb09g000300 n=1... 99 5e-20 UniRef50_B9KC73 Putative uncharacterized protein n=1 Tax=Campylo... 99 6e-20 UniRef50_A9V5V0 Predicted protein n=1 Tax=Monosiga brevicollis R... 99 6e-20 UniRef50_A9HQT1 Exonuclease n=3 Tax=Proteobacteria RepID=A9HQT1_... 99 6e-20 UniRef50_C0VTN4 DNA polymerase III, epsilon subunit n=3 Tax=Cory... 99 6e-20 UniRef50_C5L3L2 RNA exonuclease, putative n=1 Tax=Perkinsus mari... 99 6e-20 UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacte... 99 6e-20 UniRef50_Q31EW8 Putative uncharacterized protein n=1 Tax=Thiomic... 99 6e-20 UniRef50_C6MU49 Exonuclease RNase T and DNA polymerase III n=1 T... 99 7e-20 UniRef50_C0VS85 Putative uncharacterized protein n=3 Tax=Coryneb... 99 7e-20 UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM 99 7e-20 UniRef50_B4VF18 DNA polymerase III subunit epsilon n=9 Tax=Strep... 99 8e-20 UniRef50_B2AUA2 Predicted CDS Pa_1_18450 n=3 Tax=Sordariomycetid... 99 8e-20 UniRef50_Q8WTP8 Apoptosis-enhancing nuclease n=42 Tax=Chordata R... 99 8e-20 UniRef50_Q9APT6 DNA polymerase III n=1 Tax=Pseudomonas aeruginos... 99 9e-20 UniRef50_B6U6C6 Exonuclease n=1 Tax=Zea mays RepID=B6U6C6_MAIZE 99 9e-20 UniRef50_A5ZSM2 Putative uncharacterized protein n=3 Tax=Clostri... 99 9e-20 UniRef50_Q47UC9 Exonuclase n=2 Tax=Alteromonadales RepID=Q47UC9_... 98 1e-19 UniRef50_Q8RXK2 Small RNA degrading nuclease 3 n=5 Tax=Arabidops... 98 1e-19 UniRef50_C4LJG9 Putative DNA polymerase III epsilon subunit n=1 ... 98 1e-19 UniRef50_Q211V1 Exonuclease n=2 Tax=Rhizobiales RepID=Q211V1_RHOPB 98 1e-19 UniRef50_UPI000155D9F8 PREDICTED: similar to Interferon-stimulat... 98 1e-19 UniRef50_D1H2G0 Whole genome shotgun sequence of line PN40024, s... 98 2e-19 UniRef50_A9UYZ2 Predicted protein n=1 Tax=Monosiga brevicollis R... 98 2e-19 UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacter... 98 2e-19 UniRef50_UPI00005884C7 PREDICTED: hypothetical protein n=1 Tax=S... 98 2e-19 UniRef50_A3JK24 DNA polymerase III subunit epsilon n=1 Tax=Marin... 98 2e-19 UniRef50_D1N3T8 Exonuclease RNase T and DNA polymerase III n=1 T... 98 2e-19 UniRef50_Q5NAC0 Os01g0280000 protein n=11 Tax=Magnoliophyta RepI... 98 2e-19 UniRef50_C5DR59 ZYRO0B05764p n=1 Tax=Zygosaccharomyces rouxii Re... 97 2e-19 UniRef50_UPI0000E49428 PREDICTED: similar to exonuclease domain ... 97 2e-19 UniRef50_B7GKP6 3'-5' exonuclease related protein n=1 Tax=Anoxyb... 97 2e-19 UniRef50_A3DCR5 Exonuclease, RNase T and DNA polymerase III n=3 ... 97 3e-19 UniRef50_B2UMX8 Exonuclease RNase T and DNA polymerase III n=1 T... 97 3e-19 UniRef50_C5BZW8 Exonuclease RNase T and DNA polymerase III n=6 T... 97 3e-19 UniRef50_B0KHB9 Exonuclease RNase T and DNA polymerase III n=3 T... 97 3e-19 UniRef50_Q934V3 Putative uncharacterized protein HCM2.0114c n=1 ... 97 3e-19 UniRef50_B0DGJ1 Predicted protein n=4 Tax=Agaricales RepID=B0DGJ... 97 3e-19 UniRef50_C5CA98 Exonuclease, DNA polymerase III, epsilon subunit... 97 3e-19 UniRef50_C9YB77 Putative uncharacterized protein n=1 Tax=Curviba... 97 3e-19 UniRef50_A2BVT4 Possible DNA polymerase III, epsilon subunit n=8... 97 3e-19 UniRef50_UPI0001925A39 PREDICTED: similar to RNA exonuclease 4 n... 97 3e-19 UniRef50_A7RIG2 Predicted protein n=1 Tax=Nematostella vectensis... 97 3e-19 UniRef50_A3W6U6 Probable DNA polymerase III (Epsilon chain) prot... 97 4e-19 UniRef50_UPI000038277F COG0847: DNA polymerase III, epsilon subu... 96 4e-19 UniRef50_Q68BL2 DNA helicase RecG n=2 Tax=cellular organisms Rep... 96 4e-19 UniRef50_Q4S474 Chromosome undetermined SCAF14743, whole genome ... 96 4e-19 UniRef50_D2EFA4 Exonuclease RNase T and DNA polymerase III n=1 T... 96 4e-19 UniRef50_A5FAP0 Exonuclease, RNase T and DNA polymerase III n=3 ... 96 4e-19 UniRef50_Q0SR27 Exonuclease family protein n=9 Tax=Clostridium p... 96 5e-19 UniRef50_A1ZST4 3'-5' exonuclease eri-1 n=2 Tax=Bacteria RepID=A... 96 5e-19 UniRef50_C0VSD3 DNA polymerase III subunit epsilon n=3 Tax=Actin... 96 5e-19 UniRef50_A9EUY2 Predicted exonuclease n=3 Tax=Myxococcales RepID... 96 5e-19 UniRef50_C9P6S7 DNA polymerase III epsilon subunit n=1 Tax=Vibri... 96 5e-19 UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 ... 96 6e-19 UniRef50_A7VSN5 Putative uncharacterized protein n=1 Tax=Clostri... 96 6e-19 UniRef50_D1INZ9 Whole genome shotgun sequence of line PN40024, s... 96 6e-19 UniRef50_A2R5A3 Contig An15c0120, complete genome n=2 Tax=Fungi/... 96 6e-19 UniRef50_C0VV73 DNA polymerase III epsilon subunit n=2 Tax=Coryn... 96 6e-19 UniRef50_C4QB28 3'-5' exonuclease eri1-related n=2 Tax=Schistoso... 96 6e-19 UniRef50_Q81AM4 DNA polymerase III, epsilon chain n=71 Tax=Bacil... 96 7e-19 UniRef50_Q8DQ14 DNA polymerase III, epsilon chain n=57 Tax=Strep... 96 7e-19 UniRef50_D1N0X4 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 96 7e-19 UniRef50_Q2H620 Putative uncharacterized protein n=2 Tax=Sordari... 96 7e-19 UniRef50_A1U017 Exonuclease, RNase T and DNA polymerase III n=2 ... 96 7e-19 UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=... 96 7e-19 UniRef50_B8HHY2 Exonuclease RNase T and DNA polymerase III n=1 T... 96 7e-19 UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T... 96 7e-19 UniRef50_A7ERC9 Putative uncharacterized protein n=2 Tax=Sclerot... 96 8e-19 UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp.... 96 8e-19 UniRef50_C9KKS1 Putative DNA polymerase III subunit epsilon n=1 ... 95 8e-19 UniRef50_A0R7K3 Exonuclease, RNase T and DNA polymerase III n=1 ... 95 9e-19 UniRef50_Q2S4M8 Exonuclease, putative n=1 Tax=Salinibacter ruber... 95 9e-19 UniRef50_C5B5B3 Putative uncharacterized protein n=1 Tax=Methylo... 95 9e-19 UniRef50_A7RWU1 Predicted protein n=2 Tax=Nematostella vectensis... 95 1e-18 UniRef50_Q22S54 Exonuclease family protein n=1 Tax=Tetrahymena t... 95 1e-18 UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergi... 95 1e-18 UniRef50_B5MA46 Putative DNA polymerase III, epsilon subunit n=5... 95 1e-18 UniRef50_Q4SXK5 Chromosome 15 SCAF12379, whole genome shotgun se... 95 1e-18 UniRef50_A1VSD3 Exonuclease, RNase T and DNA polymerase III n=1 ... 95 1e-18 UniRef50_O16312 Putative uncharacterized protein n=1 Tax=Caenorh... 95 1e-18 UniRef50_UPI00017B20E5 UPI00017B20E5 related cluster n=1 Tax=Tet... 95 1e-18 UniRef50_C6QF81 Exonuclease RNase T and DNA polymerase III n=1 T... 95 1e-18 UniRef50_Q6CE69 RNA exonuclease 4 n=1 Tax=Yarrowia lipolytica Re... 95 1e-18 UniRef50_A8SSB9 Putative uncharacterized protein n=2 Tax=Clostri... 95 1e-18 UniRef50_C1DKH9 DNA polymerase III, epsilon subunit n=17 Tax=Pse... 94 2e-18 UniRef50_Q0IXT1 Os10g0407500 protein n=5 Tax=Magnoliophyta RepID... 94 2e-18 UniRef50_C4Z5C1 Sporulation inhibitor KapD n=1 Tax=Eubacterium e... 94 2e-18 UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 94 2e-18 UniRef50_B3EM65 Exonuclease RNase T and DNA polymerase III n=1 T... 94 2e-18 UniRef50_Q5HZL1 ERI1 exoribonuclease 2 n=13 Tax=Eumetazoa RepID=... 94 2e-18 UniRef50_Q5K6U9 Ribonuclease H, putative n=2 Tax=Filobasidiella ... 94 2e-18 UniRef50_C6DYG6 Exonuclease RNase T and DNA polymerase III n=3 T... 94 2e-18 UniRef50_Q580W1 Putative uncharacterized protein n=2 Tax=Trypano... 94 2e-18 UniRef50_C1DM64 Exonuclease n=21 Tax=Pseudomonadaceae RepID=C1DM... 94 2e-18 UniRef50_B5GC70 DNA polymerase III n=1 Tax=Streptomyces sp. SPB7... 94 2e-18 UniRef50_UPI000169A625 DNA polymerase III, epsilon subunit n=1 T... 94 2e-18 UniRef50_Q2B6U8 DNA polymerase III subunit epsilon n=1 Tax=Bacil... 94 2e-18 UniRef50_B6GWY2 Pc12g00030 protein n=24 Tax=Eurotiomycetidae Rep... 94 2e-18 UniRef50_B9KV31 Putative uncharacterized protein n=1 Tax=Rhodoba... 94 2e-18 UniRef50_B8HJ08 Exonuclease RNase T and DNA polymerase III n=1 T... 94 2e-18 UniRef50_A8RJ45 Putative uncharacterized protein n=4 Tax=Clostri... 94 2e-18 UniRef50_A7SJI5 Predicted protein (Fragment) n=4 Tax=Eumetazoa R... 94 2e-18 UniRef50_A4RYR9 Predicted protein (Fragment) n=2 Tax=Ostreococcu... 94 2e-18 UniRef50_UPI000155C35F PREDICTED: similar to HEM45 n=2 Tax=Mamma... 94 2e-18 UniRef50_C2CUZ9 DNA polymerase III subunit epsilon n=1 Tax=Gardn... 94 2e-18 UniRef50_B9KY42 Putative DNA polymerase III, epsilon chain (EC )... 94 2e-18 UniRef50_Q0EWR1 Putative uncharacterized protein n=1 Tax=Maripro... 94 2e-18 UniRef50_A1D8W3 RNA exonuclease, putative n=4 Tax=Trichocomaceae... 94 3e-18 UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID... 94 3e-18 UniRef50_A8K979 ERI1 exoribonuclease 2 n=10 Tax=Metazoa RepID=ER... 94 3e-18 UniRef50_A1ZEC3 DNA polymerase III alpha subunit n=2 Tax=Bactero... 94 3e-18 UniRef50_B6FR49 Putative uncharacterized protein n=2 Tax=Clostri... 94 3e-18 UniRef50_Q8QNF3 EsV-1-126 n=1 Tax=Ectocarpus siliculosus virus 1... 93 3e-18 UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2... 93 3e-18 UniRef50_B1P7L9 YacC n=21 Tax=root RepID=B1P7L9_ECOLX 93 4e-18 UniRef50_B7APL8 Putative uncharacterized protein n=1 Tax=Bactero... 93 4e-18 UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax... 93 4e-18 UniRef50_UPI00017F79C3 YALI0B10824p n=1 Tax=Yarrowia lipolytica ... 93 4e-18 UniRef50_A8Q5M1 Exonuclease family protein n=1 Tax=Brugia malayi... 93 4e-18 UniRef50_Q1WDI5 DNA polymerase III n=5 Tax=root RepID=Q1WDI5_9CAUD 93 5e-18 UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae ... 93 5e-18 UniRef50_Q9XXI3 Protein Y17G7B.12, confirmed by transcript evide... 93 5e-18 UniRef50_A0B4X4 Exonuclease, RNase T and DNA polymerase III n=2 ... 93 5e-18 UniRef50_C5MCL7 Putative uncharacterized protein n=1 Tax=Candida... 93 6e-18 UniRef50_C7R5J9 DNA polymerase III, epsilon subunit n=1 Tax=Jone... 93 6e-18 UniRef50_P53331 RNA exonuclease 1 n=6 Tax=Saccharomyces cerevisi... 93 6e-18 UniRef50_UPI00019273F5 PREDICTED: similar to YALI0B15400p n=2 Ta... 93 6e-18 UniRef50_Q9FLJ5 Exonuclease-like protein n=3 Tax=Arabidopsis tha... 93 7e-18 UniRef50_A8QEY2 Exonuclease family protein n=1 Tax=Brugia malayi... 93 7e-18 UniRef50_Q4QAQ2 Phosphotransferase, putative n=3 Tax=Leishmania ... 92 7e-18 UniRef50_A1TXN8 Exonuclease, RNase T and DNA polymerase III n=1 ... 92 7e-18 UniRef50_C4WWM3 ACYPI009144 protein n=2 Tax=Acyrthosiphon pisum ... 92 7e-18 UniRef50_C5DVJ3 ZYRO0D07172p n=1 Tax=Zygosaccharomyces rouxii Re... 92 8e-18 UniRef50_B5FER1 Exonuclease KapD n=61 Tax=Vibrionales RepID=B5FE... 92 8e-18 UniRef50_Q7F186 Os08g0377400 protein n=3 Tax=Spermatophyta RepID... 92 9e-18 UniRef50_A8JCL9 Predicted protein n=2 Tax=Viridiplantae RepID=A8... 92 9e-18 UniRef50_Q06GG8 Putative exonuclease n=2 Tax=Rhodococcus RepID=Q... 92 9e-18 UniRef50_C4V4J9 Possible exonuclease n=2 Tax=Selenomonas RepID=C... 92 9e-18 UniRef50_B5Y3X9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 92 1e-17 UniRef50_A8XUU5 Putative uncharacterized protein n=2 Tax=Caenorh... 92 1e-17 UniRef50_D2RA75 Exonuclease n=1 Tax=Gardnerella vaginalis 409-05... 92 1e-17 UniRef50_B6GWK0 Pc09g00030 protein n=2 Tax=Penicillium chrysogen... 92 1e-17 UniRef50_C9L988 Exonuclease family protein n=1 Tax=Blautia hanse... 92 1e-17 UniRef50_D0NF15 RNA exonuclease 4 n=1 Tax=Phytophthora infestans... 92 1e-17 UniRef50_B5X2U0 Interferon-stimulated 20 kDa exonuclease-like 1 ... 92 1e-17 UniRef50_UPI00016E5051 UPI00016E5051 related cluster n=1 Tax=Tak... 92 1e-17 Sequences not found previously or not previously below threshold: >UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT Length = 726 Score = 186 bits (472), Expect = 4e-46, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V D+ETTGL+ E+G + V G+ + V + +++ G Sbjct: 418 LEDDFVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDR-FSAFVNPGVSIPSFIVKLTGI 476 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + E ++++G+ N FD + + Sbjct: 477 TDDMVKDA----PPVEQVLNEFMEFIQGSVLVAHNANFDVGFIKQNAKLMGEKVKNP--- 529 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L+ VA+ L + + N H A+ D+ ATA F Sbjct: 530 --------YIDTLELCRKMFPELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIFMHCI 581 Query: 181 HTAAAH 186 + Sbjct: 582 NILKEK 587 >UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia RepID=DPO3_THETN Length = 1401 Score = 180 bits (457), Expect = 2e-44, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +V D+ETTGL +E+G + + + + V ++ G Sbjct: 384 LEGEFVVFDIETTGLSNINDEIIEIGAVKIKNKKIVD-TFETFVNPQIPISSFITKLTGI 442 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + + ++ +G N FD + + + + Sbjct: 443 DESMVKDA----PLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTV-- 496 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + LD +AE V +++ H A+ DA ATA F + Sbjct: 497 ---------LDTLELSRHLYQDLKNYKLDTLAEFFEVKLLHHHRAVEDAKATAEIFIKML 547 Query: 181 HTAAA 185 Sbjct: 548 EKLQE 552 >UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S1A9_FINM2 Length = 1421 Score = 178 bits (452), Expect = 8e-44, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 17/187 (9%) Query: 1 MA-KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ +V D+ETTGL T E+G + + + + + + K E+ Sbjct: 397 MNLREFVVFDIETTGLSNATEKITEIGAVKIVDNKIVD-EFNQLINPEIPIPEKITELTS 455 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E ++ T N FD + + + + Sbjct: 456 ITNEMVKDM----PKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGI------- 504 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + A + + LD + ++ V + N H A DA AT F + Sbjct: 505 ----NPVRTYIDTLAFARALEPHLKNHKLDTLTKKYNVNLFNHHRACDDARATGEVFICM 560 Query: 180 RHTAAAH 186 + Sbjct: 561 VNNLEQR 567 >UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z9S3_9FIRM Length = 1474 Score = 178 bits (452), Expect = 9e-44, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +V DLETTG + +E+G + V+ G+ + V + ++ Sbjct: 405 LNDRYVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDR-FSTFVNPEIPIPFRIEKLTSI 463 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + ++ + + N FD + + + Sbjct: 464 NDEMV----IDAPKIEEILPQFMEFCKDSVMVAHNSDFDMSFIEANCKRQDLE------- 512 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + A + I LD VA+ LG+ + + H A+ DA TA F L Sbjct: 513 ----CDFTVIDTVAMSRYLIIGLGRYKLDNVAKALGIVLDHHHRAVDDAECTALIFLKLC 568 Query: 181 HTAAAH 186 Sbjct: 569 KMLEGK 574 >UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia RepID=DPO3_CLOTE Length = 1427 Score = 174 bits (443), Expect = 9e-43, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V D+ETTG +E+G + + G+ + V K +E+ G Sbjct: 409 LEDSYVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYS-TFVNPERIIPEKIIELTGI 467 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + + + D++ + N FD + + + + + F+ Sbjct: 468 HDYMVKDA----PKIEEVLPKFIDFIEDSILVAHNANFDVSFIKKNCKDFGIHFNNP--- 520 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L K + L+ VA+ LG+P++N H A+ DA T Sbjct: 521 --------ILDTIPLCKFLYPELKRYKLNVVAKHLGIPLLNHHRAVEDAKTTGDILLKAF 572 Query: 181 HTAAAH 186 Sbjct: 573 EDLKDK 578 >UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus RepID=C7RGM9_ANAPD Length = 1365 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 59/181 (32%), Gaps = 16/181 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V DLETTGL E+G V+ G+ + V K +EI G Sbjct: 346 EESFVVFDLETTGLSRYKDRITEIGACRVEGGKITEI-YNELVNPEMVIPEKIIEITGIT 404 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + D+ + + G N FD V + F+P Sbjct: 405 NEMVKDC----PTIEEVLPGFLDFCKDSILVGQNTDFDVGFVRENCHRMGLDFNP----- 455 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + LD +A +L +P N H A DA ATA F + Sbjct: 456 ------IYLDTLPMARALFSDMKKFSLDKIARKLEIPAFNHHRASDDARATAQIFIKMFK 509 Query: 182 T 182 Sbjct: 510 M 510 >UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YUT4_NOCDA Length = 595 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 54/184 (29%), Gaps = 16/184 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+DLETTG + EVG + V GE + V + G + Sbjct: 26 FVVLDLETTGTSASGSRITEVGAVRVRGGEVV-GEFATLVNPGTPIPANITLLTGITQSM 84 Query: 65 LYREALTEQQTAVAWGEVQDWLR---GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +L N FD+ + + + Sbjct: 85 VASA----PPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPG----- 135 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + D A L T L +A GVPV H A+ DA AT L Sbjct: 136 ---YPVVDTLRLARAVLARGETRNHRLATLAAYFGVPVAPNHRALEDARATVGVLHGLVE 192 Query: 182 TAAA 185 Sbjct: 193 RLRP 196 >UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI24_RHOM4 Length = 565 Score = 173 bits (440), Expect = 2e-42, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 59/181 (32%), Gaps = 16/181 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VVD ETTG +E+ + V G + + + P + G Sbjct: 8 FVVVDTETTGSGPA-DRIIELAAVRVQGGRIVER-FATLINPGRSVPPFITRLTGITTAM 65 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + D+L N AFD ++ + + + Sbjct: 66 L----VGRPSADEVLPDFLDFLGDGVLVAHNLAFDRKMLEAELQRIGLAWPGN------- 114 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + + +GLD + +PV NRH A+GDA ATA L A Sbjct: 115 ---PALCTLRLARRLLPGLPAKGLDGLIRFYQIPVENRHRALGDAEATAHVLLRLLEEAR 171 Query: 185 A 185 Sbjct: 172 R 172 >UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWI2_ALIAD Length = 1440 Score = 173 bits (440), Expect = 2e-42, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V D ETTGL+ +E+ + V G+ + ++ + DPK +E+ G Sbjct: 424 ETEYVVFDTETTGLNAREDTLIEIAAVKVKAGQIVDTYA-TLIDPERSLDPKIVELTGIT 482 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + A + + RG N FD + + + V Sbjct: 483 NEMVAGQ----PKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPV-- 536 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + A ++ + L + ++ V +VN H A+ D+ ATA F + Sbjct: 537 --------IDTLALARVLYPGEKNYKLKTLTQKFSVDLVNHHRALADSEATAKVFVHMLK 588 Query: 182 TAAAH 186 A A Sbjct: 589 DAKAR 593 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 58/187 (31%), Gaps = 22/187 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +V+D+ETTGLD +E+ + ++ G ++ V P + G Sbjct: 2 LPQTYVVLDVETTGLDPARDRIIEIAAVRLEGG-NITRQFQTLVNPGRPIPPAIERLTGI 60 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + D R G N FD + + Sbjct: 61 SDAMVREA----PPLPEVLPGLLDLFRDAIPVGHNGTFDLAFLNQALGHGWHSPL----- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L A ++ LD +++ L + H A+ D TA + L Sbjct: 112 ---------LDTLALSRILFPCLASHRLDYMSKYLTLEATGHHRALDDVLTTARLLENL- 161 Query: 181 HTAAAHL 187 A L Sbjct: 162 --WQATL 166 >UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae RepID=C7NEP7_LEPBD Length = 1459 Score = 171 bits (435), Expect = 7e-42, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V D+ETTG D +E+G + + G + V K E+ + Sbjct: 425 YVVFDIETTGFDPFNDKIIEIGAVKMR-GREVIGEFSEFVNPEIPIPQKITELTTITDEM 483 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + ++ ++ G T N FD + ++ + + +SP Sbjct: 484 VANA----EKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLEYSPSV------ 533 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + GL + + G+ + H A+ DA ATA F + Sbjct: 534 -----IDTLPLARTLLPELRGYGLANLVKYFGITLETHHRAVDDAKATAEVFQKFLNM 586 >UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW68_HALOH Length = 1397 Score = 171 bits (435), Expect = 8e-42, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 15/179 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V DLETTGL+ +E+G + V +G+ + V+ + K E+ G Sbjct: 382 SATFVVFDLETTGLNKFKNEIIEIGAVKVKSGKVID-EFSSFVKPGESIPNKITELTGIT 440 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + R G+ +++ G+ N FD + Sbjct: 441 NEMVSRA----PDIEGVIGDFLEFIDGSILVAHNADFDYGFLQVALKKTGQGD------- 489 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + L+ +A L V + N H A+ DA AT+ F Sbjct: 490 ---ISYPVLDTLTLSRALLPDLSNHKLNTLARHLNVRLDNHHRAVEDARATSEIFINFL 545 >UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia RepID=DPO3_CLOPE Length = 1449 Score = 171 bits (435), Expect = 9e-42, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 62/184 (33%), Gaps = 20/184 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V D+ETTG +E+G + + GE + V+ K E+ + Sbjct: 433 DEYVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPKVNIPYKITELTSITQ 491 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + +++ + N AFD + + + Sbjct: 492 NMVNGQ----PTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKTLKNPV---- 543 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC----FDM 178 + + + L+ VA+ LG+ + N H A+ DA ATA F Sbjct: 544 -------MDTVPLARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKK 596 Query: 179 LRHT 182 ++ Sbjct: 597 MKEE 600 >UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM Length = 1010 Score = 171 bits (434), Expect = 9e-42, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTG+ +E+ + V+ G+ + V P A +NG ++ Sbjct: 24 DYVVFDLETTGISSKYDEVIEISAVKVEAGQ-VTGEFSTLVNPGRKIPPAASRVNGITDK 82 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRV 122 + + G+ + G N FD + R Y Sbjct: 83 MVAGAL----PFSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRKVPDNDY--- 135 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + L +AE G+ H A+ D + L Sbjct: 136 -------VDTLLLARAALPELSHHRLVDLAEHYGISAKGAHRALNDCHMNQKVYGKLAEE 188 Query: 183 AAAH 186 A A Sbjct: 189 AEAA 192 >UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria RepID=C9S0C0_GEOSY Length = 1444 Score = 171 bits (433), Expect = 1e-41, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V D+ETTGL +E+ + V GE + ME+ G Sbjct: 426 EETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDR-FMSFANPGHPLSVTTMELTGIT 484 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + DW T N +FD + G+ Sbjct: 485 DEMVKDA----PKPDEVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGR-------GK 533 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + + L+ + ++ + + H AI DA AT L Sbjct: 534 IANPVIDT---LELARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLLK 590 Query: 182 TAAAH 186 A Sbjct: 591 EAEER 595 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 171 bits (433), Expect = 1e-41, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 61/181 (33%), Gaps = 16/181 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V+D ETTGLD +E+G + + G+ + H ++ ++ EI G Sbjct: 355 NATFVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVD-EYHTLIKPSREISRRSSEITGIT 413 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L + E +L + N FD + G Sbjct: 414 QEMLENKR----SIEEVLPEFLGFLENSIIVAHNANFDYRFLRLWIKKVM--------GL 461 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 W D A A L LD+V E+LG+ H A+ DA TA F Sbjct: 462 DWERPYIDTLALAKSLL---KMRSYSLDSVVEKLGLGPFRHHRALDDARVTAQVFLRFVE 518 Query: 182 T 182 Sbjct: 519 M 519 >UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=A7HNS3_FERNB Length = 1390 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+DLETTGL+ + +E+G + G+ + H V + K++ I G E Sbjct: 382 TYVVLDLETTGLNPRSDEIMEIGAVKTRDGKVID-EFHTFVRPN-KLNKKSLNITGITED 439 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ ++++ + N FD T + + F Sbjct: 440 MLKDA----PDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEF--------- 486 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D + L + + LD + + G+ H A+ DA T F L A Sbjct: 487 NPPYIDTLRLSQA-LLRNKIKSFSLDKLVDHFGLGAFQHHRALDDARVTVNVFWKLIELA 545 Query: 184 AAH 186 Sbjct: 546 KKK 548 >UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C525 Length = 529 Score = 169 bits (430), Expect = 3e-41, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 13/183 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VVDLETTGL +E+G + G+ ++ + G Sbjct: 20 NTTFVVVDLETTGLKAKNDHIIEIGAIKTRGGK-TIGTFSSFIDPGMEIPDHITSLTGIT 78 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + T Q + ++ RG+ + N FD + + + + Sbjct: 79 TADVE----TAPQLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWPS----- 129 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A L+ L +A +G P H A+ DA AT L Sbjct: 130 ---PSVVDTLTLARRVLDRSQVGSFKLSQLARYVGSPNRPAHRALDDAIATVDVLHYLME 186 Query: 182 TAA 184 A Sbjct: 187 RLA 189 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + +++DLETTG +++G++ ++ G+ + P ++ Sbjct: 1 MKDRFVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDR-FSSFFNPERDIPPFVQQLTN 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E+ + A +V D L+ + F N +FD + + +P Sbjct: 60 ITEQMVADA----PSFAEEAAKVADMLQQSYFVAHNVSFDLQFLQEELHMAGLPPFSG-- 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + ++ E L +A++L + H A DA TA F L Sbjct: 114 --------PTIDTVELARIVFPTAESYKLGDLAKQLHIDHDQPHQADSDAEVTAKLFIAL 165 Query: 180 RHTAAA 185 + Sbjct: 166 LNRLRQ 171 >UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A6Z2_ALHEH Length = 714 Score = 168 bits (427), Expect = 7e-41, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 17/183 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGYYE 62 +V D E TGL+ + + + + V G L + P ++ +G + Sbjct: 509 FVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINPGRPIPPGSVRFHGITD 568 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + V + + ++ N AFD ++ + + F + + Sbjct: 569 DDVQDK----PPIEVVLPQFKSFVGDAVLVAHNAAFDMKFISMKEREAGVRFDNPVLDTL 624 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L D E LDA+ +R G+ + RH+A+GD ATA + Sbjct: 625 LLSALLD-----------GDEEDHSLDALCDRYGIAITGRHTALGDTLATAELLVRIIER 673 Query: 183 AAA 185 A Sbjct: 674 LEA 676 >UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWZ0_STRM9 Length = 1465 Score = 168 bits (426), Expect = 9e-41, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V D+ETTG +E+G + + G+ L V K +E+ G Sbjct: 401 EEEFVVFDIETTGFSPINDKIIEIGAVKLKNGKVLDR-FSEFVNPQTIIPKKIVELTGIN 459 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + ++++G T N FD ++++ ++ Sbjct: 460 DNMVKDSDI----IDKVMPRFLEFVKGTTLVAHNAKFDVGFISKKCEDLNLETD------ 509 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + K+ +D + LD + +R + + N H A+ DA ATA F L Sbjct: 510 -----FSYIDTLEWSKILVDDVKRFNLDTLTKRFNIKLENHHRAVDDANATAELFKKLLS 564 Query: 182 TAAAH 186 +A+ Sbjct: 565 LVSAN 569 >UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM Length = 1415 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 60/180 (33%), Gaps = 16/180 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +V D+ETTGL E+G + + G + K E+ Sbjct: 399 NTYVVFDIETTGLSPIRDKITEIGAVKIVDGIITER-FSQLINPQMLIPEKVQELTRITN 457 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E + D+++ + N FD+ + R + F Sbjct: 458 ALVENE----PTIEEVAPKFYDFIKDSVLVAHNAKFDTAFIRRVFKENDLDFINP----- 508 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + + T+ L + ++ GV +V H A+ DA ATA F L + Sbjct: 509 ------ILDTLSFARATVKDTKKFNLATLCKKFGVSLVGAHRAVNDAEATAHLFIKLINK 562 >UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=Clostridiales RepID=C7GFY3_9FIRM Length = 697 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 16/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V DLETTG D +E+G + V GE V + E+ Sbjct: 471 LDDTYVVFDLETTGFSPDKNKIIEIGAVKVVHGEITER-FSTFVNPEVPIPYRIEELTSI 529 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + ++ N FD + + + + Sbjct: 530 RDDMV----IDAPKIETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIE------- 578 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + A ++ + LD VA+ LGV + N H A+ DA TA F Sbjct: 579 ----KEFTIIDTVALARILLPQLNRFKLDTVAKALGVSLENHHRAVDDAGCTAEIFVKFV 634 Query: 181 HTA 183 Sbjct: 635 KML 637 >UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MZX4_9GAMM Length = 738 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 16/183 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + ++VD+ETTG + EVG++ V GE + + + + G Sbjct: 570 EQPYVIVDVETTGGRKEQHRVTEVGMVKVLNGEIVD-EWQSLINPMRHIPQSITRLTGIS 628 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E+ ++ G+ F N FD + F Sbjct: 629 NEMVSNA----PVFDDVADEIAEFCAGSVFVAHNVNFDYGFFRSEFERLGRRFHAPK--- 681 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + L + L + + N H A+ DA A A F +++ Sbjct: 682 --------LCTVQMSRKYLPGHSSYSLGKLCAALDIDLENHHRALDDAKAAAHVFRLIQE 733 Query: 182 TAA 184 Sbjct: 734 KRQ 736 >UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes RepID=Q67P96_SYMTH Length = 1475 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+D+ETTG +E+G + GE + V P+ ++ Sbjct: 453 EFVVLDIETTGFSPIGDDIIELGAVRCRGGEIVD-SFQSFVRPTKPVPPEVQKLTNITPD 511 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A A ++ N FD + + R Y V Sbjct: 512 MLEGA----PEAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKYLGEEFANPV---- 563 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + L A+ + L VP+V+ H A DA A L A Sbjct: 564 ------LDTLTLARAVLPHMRSHSLAALTKELQVPLVDHHRADADAKTAAMVLMKLLERA 617 Query: 184 AA 185 Sbjct: 618 EG 619 >UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=B4S124_ALTMD Length = 715 Score = 166 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 51/176 (28%), Gaps = 16/176 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A+ +VVD+ETTG + E+G++ + G+ + + + G Sbjct: 540 AQPYVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDR-FQTLLNPQRRIPSSITRLTGIS 598 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + + F N FD + ++ F Sbjct: 599 DDMVADA----PLFAEVADHIASFTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPK--- 651 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L + + + + H A+ DA A A Sbjct: 652 --------MCTVREMRRTHPGLSSYSLANLTKHFHIDMEQHHRALSDAKAAAELLK 699 >UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI21_CORK4 Length = 616 Score = 166 bits (420), Expect = 5e-40, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 59/185 (31%), Gaps = 13/185 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VVDLETTGL +E+G + + GE + V+ P I G Sbjct: 31 NTTFVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISR-FSTFVDPGRLIPPLITNITGIS 89 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + A A + ++ RG N FD + + + + Sbjct: 90 DDDVNGA----PKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHITWP------ 139 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 A L+ L ++A H A+ DA AT F L Sbjct: 140 --QPTHLCTLVLARTMLDRCAVGSFKLSSLARHFHATTTPTHRALDDALATVTVFHGLLE 197 Query: 182 TAAAH 186 +H Sbjct: 198 ELGSH 202 >UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrhizobium RepID=A4YW65_BRASO Length = 737 Score = 165 bits (419), Expect = 6e-40, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 53/175 (30%), Gaps = 16/175 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVD+ETTG E+G + V + + H + K +E+ G Sbjct: 560 EQDYVVVDIETTGSWSSGDRITEIGAVKVRNHQLVE-QWHSLINPQRPIPAKIVELTGIT 618 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ F N FD ++ + F Sbjct: 619 NQMVRDA----PVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRF------- 667 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 R L + GL + G+ + + H A+ DA A A Sbjct: 668 ----RFPKLCTCVGMRRRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAAAHLL 718 >UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VLC1_9ACTO Length = 615 Score = 164 bits (417), Expect = 9e-40, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 54/181 (29%), Gaps = 13/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTG TA E G + V GE + V P + G + Sbjct: 51 TFVVFDLETTGTGPTTAEITEFGAVKVRGGEVV-AEFATLVRASTGIPPLITVLTGITDA 109 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L T A ++++G N FD + + P Sbjct: 110 MLA----TAPPLAEVLPAFLEFIQGTVLVAHNAGFDLSFLKAACERVGYPVP-------- 157 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D A A + D + L ++A H A+ DA AT L Sbjct: 158 TWEHLDTARLARRIVTRDESPNNKLSSLARLFRARTEPCHRALADARATVDVLHGLFERL 217 Query: 184 A 184 Sbjct: 218 G 218 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M++ +V+DLETTG D A +++G + V+ G ++ V+ + P E+ G Sbjct: 1 MSQSFVVIDLETTGNSPDQGAKMIQIGAVKVE-GCTITDRFSTFVDPGCSIPPFITELTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 ++ + ++ ++ G++ N FD + Q T + Sbjct: 60 ITDKDVEGA----PVFREIATDLLAFMEGSSLVAHNVPFDKGFLEAQLETEGLRLPKCCQ 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ + E L ++ L + H A DA TA F L Sbjct: 116 F----------DTVELSRVLLPTQESYKLSELSSSLDMDHDRPHRADSDAEITAELFIKL 165 Query: 180 RHTAAA 185 H Sbjct: 166 LHKLER 171 >UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11UG6_CYTH3 Length = 449 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 16/174 (9%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 ++D+ETTG +E+ + D + + + G + Sbjct: 5 IIDIETTGGHASGNRIIEIAIYKFDGEKITD-TYQTLINPERRIPVFITSLTGIDTEMVA 63 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 A E+ D+ R + F N FD T V ++ +MP++ Sbjct: 64 DA----PVFADVAREITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYNLPK-------- 111 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + L + LG+ V NRH A GDA AT + L Sbjct: 112 ---LCTVRLSRKIFPGLPSYSLGNLCGSLGIDVQNRHRAAGDAEATVRLLNKLL 162 >UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=17 Tax=Fusobacterium RepID=A5TTA5_FUSNP Length = 1454 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V D+ETTGL+ T +E+G + + G + + EI Sbjct: 424 EEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYS-QLINPGRPIPYHITEITSIT 482 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E + G+ D++ N FD + R Y + Sbjct: 483 DEQVANE----PKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKY--------LNI 530 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D + + GL + + LG+ + H A+ D+ ATA F + Sbjct: 531 DLQSSVIDT--LQMARDLFPDLKKYGLGDLNKTLGLALEKHHRAVDDSQATANMFIIFLD 588 Query: 182 TAAAH 186 Sbjct: 589 KYKEK 593 >UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0FNH3_9FIRM Length = 228 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 49/183 (26%), Gaps = 16/183 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ DLETTG +E+ + V +G+ + V A +N + Sbjct: 15 PDYVLFDLETTGTSCIYDEVIEISAVKVRSGKVVE-EFSQLVNPKRPIPYAASMVNHISD 73 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGR 121 + E E + + G N FD + R Sbjct: 74 EMVANE----PDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTNDY-- 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + KL L +AE G+ H A+ D F+ L Sbjct: 128 --------VDTLRVAKLCFPEWRHRRLSDLAEHYGISTRGAHRALTDCKMNQQVFEYLAK 179 Query: 182 TAA 184 Sbjct: 180 ELE 182 >UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510268 Length = 581 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 51/183 (27%), Gaps = 14/183 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYYE 62 ++VDLETTG + E+G + GE + V+ + P + G Sbjct: 30 TFVIVDLETTGTTAGKSEITEIGAVKTRGGE-VLGEFQSLVKPEESVISPFVARLTGITH 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + ++ G N FD + + Sbjct: 89 AMVDDA----PSIRSVLPSFLEFCVGAVLVAHNAPFDIGFIRSACEKLDYHWP------- 137 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D + ++ D L +A G V H A+ DA AT + Sbjct: 138 -QPTVLDTVTLSRRVVSRDEVRNHKLSTLAAHFGTEVSPDHRALSDAKATGEVLHRVLER 196 Query: 183 AAA 185 Sbjct: 197 FGG 199 >UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCD0_PARDP Length = 706 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 17/184 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 V D ETTGL+ +++G L + G+ L V+ P+++ +G + Sbjct: 516 YTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHP 575 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + A + G N AFD + + + F Sbjct: 576 EMVQGQ----PRIAEVLPAFHAYASDTVLVGHNVAFDMRFLQLKEAATGLRFDQPV---- 627 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + L+A+A RLGV + RH+A+ DA TA F L Sbjct: 628 -------LDTLLLASIAQPHEPSHSLEAIAARLGVEITQRHNALSDALVTAEVFLRLLPL 680 Query: 183 AAAH 186 A Sbjct: 681 LKAR 684 >UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha subunit (Fragment) n=1 Tax=Oribacterium sinus F0268 RepID=C2KW36_9FIRM Length = 821 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 ++ +V DLETTG D +E+G + ++ G+ + + V + ++ Sbjct: 514 LSSTTVVFDLETTGFDPRVNHIIEIGAVKIENGKIIDR-MDVFVNPGVPIPFRITQLTSI 572 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + D+ + N FD V+ + ++PFS Sbjct: 573 DDSMVMDAKG----IEEVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIPFSAPV-- 626 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + A +L + LD VA+ L + +++ H A+ DA ATA + Sbjct: 627 ---------IDTVALSRLLLPRLNRFKLDTVAKELKIELLHHHRAVDDAEATARIYLKEL 677 Query: 181 HTAAAH 186 Sbjct: 678 EILEQR 683 >UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like domain n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B5Z3_METEA Length = 754 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 59/182 (32%), Gaps = 18/182 (9%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V+D ETTGL + +EVG + + G + I G Sbjct: 542 ERFVVIDFETTGLSPNNGDRVIEVGAVEIVDGRI-GRRFQSLANPGFPVSARITAITGIS 600 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L A EV ++ G T N FD + + + Sbjct: 601 NAMLVDA----PPLAEVIREVSAFIEGATLVAHNAGFDRRFLQAEMERLGLWDDREM--- 653 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 L GK L +AE GV + + H A+ DA ATA F ++R Sbjct: 654 --------LCTMRLGKRAYPGLGSYKLAFLAEHAGVALPDAMHRALADAMATAELFLVMR 705 Query: 181 HT 182 Sbjct: 706 ER 707 >UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7T3_9FIRM Length = 237 Score = 163 bits (412), Expect = 3e-39, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 16/184 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K + VD+ET+G+ +E+G + V G+++ + P E+ G Sbjct: 1 MVKDYVCVDIETSGIRVKWDKIIEIGAVKVRDGKAVD-TFSELINPGLKLSPYITELTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + ++ + G N FD + + + + + F + Sbjct: 60 TDEMLKDK----PFIEEVLPRFIEFAGDDVIMGHNIMFDYSFLKQNAINQKLKFDKMG-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + E GL+ + G+ N H A DA T+ +++L Sbjct: 114 ---------IDTLKIARKTLKGLESRGLEYLCNYYGIADENHHRAFNDAEVTSKLYNVLM 164 Query: 181 HTAA 184 Sbjct: 165 EKFG 168 >UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flavobacteriales RepID=A4BWD8_9FLAO Length = 462 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 49/180 (27%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG E+ L D + + V + G Sbjct: 3 YAVVDIETTGNGPKGQKITEISALIFDGKKIVD-EFTSLVNPEQNIPAFITSLTGITNAM 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + +V + F N FD I+ + + F Sbjct: 62 VRNA----PRFFEIAKKVAEITENTIFVAHNVNFDYNIIQAEFKSLGFDFKRKK------ 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + I L + +P+ RH A GDA ATA L Sbjct: 112 -----LCTIRLTRKIIPGLPSYSLGNICTGENIPINGRHRAKGDAEATAELLRRLIERDE 166 >UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W351_9ACTO Length = 547 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 51/185 (27%), Gaps = 9/185 (4%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +VVDLETTG + E+G + V G+ + V A + + G Sbjct: 27 QETTFVVVDLETTGAGPGSHTITEIGAVRVRGGQ-VEDELSTLVNPGRAIPAQITVLTGI 85 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + W N FD + + + Sbjct: 86 TNAMVAGAPPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHE---- 141 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+ D A A L +A +G P H A+ DA AT Sbjct: 142 ----PRVLDTLALARRAWTRSEVPNHRLATLASFVGSPTRPTHRALDDARATVDVLHAAL 197 Query: 181 HTAAA 185 Sbjct: 198 EVLGP 202 >UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCE6_BRAFD Length = 551 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 55/185 (29%), Gaps = 13/185 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 L+VVDLETTG D E+G + V GE + V+ + G Sbjct: 18 EATLVVVDLETTGTDPAADAITEIGAVKVRGGE-VLGEFRTFVDPERPIPAYIASLTGIT 76 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + D+ N FD ++ Q + + Sbjct: 77 DAAVAEA----PSIRTVLPMFLDFAGDAALVAHNARFDIGFLSAQAAACEITWP------ 126 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 R+ D A A D L +A +G + H A+ DA AT + Sbjct: 127 --RPRVLDTLALARTVFRRDEVRDHRLSTLARHVGAGITPDHRALSDARATVDVLHAIIE 184 Query: 182 TAAAH 186 Sbjct: 185 RLGPS 189 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 63/184 (34%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I+VDLETTGLD + A +E+G L V GE + H V + + G + Sbjct: 2 EWIIVDLETTGLDPERAEILEIGALRVRGGEIVD-TFHTLVRPERPIPDEITRLTGLSDA 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A + AG + F+ + + + Y +P P Sbjct: 61 DVAGA----PSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQPGDG---- 112 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + ++ L+ +A RL + H A+ DA L Sbjct: 113 ------LCTLSLARILAPRLMSHRLEYLARRLRLRAEVSHRALADARTAHQLLMRL-EEK 165 Query: 184 AAHL 187 A L Sbjct: 166 ARRL 169 >UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostridiales RepID=C7H779_9FIRM Length = 1417 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 52/184 (28%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + V D ETTGLD E+G + V GE + V+ PK E+ G Sbjct: 396 EFCVFDTETTGLDPGVEYLTEIGAVIVRNGEVVE-EFDTFVKPGKPITPKITELTGITNE 454 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRV 122 + A + G N FD + + F P Sbjct: 455 MVADA----PGEKEALEAFLRFADGRILVAHNAHAFDIRFLKAAAKRSGISFEPT----- 505 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + + L +P H A D+AA F ++ Sbjct: 506 ------YIDTLTMAQAMYPGLHNYKQGTINKHLELPSYEAHRACEDSAALGRIFCVMLSD 559 Query: 183 AAAH 186 A Sbjct: 560 LAEK 563 >UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus RepID=Q1IXC1_DEIGD Length = 180 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 64/189 (33%), Gaps = 23/189 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQL------AAADPKAME 56 ++V DLETTGL + VE+G L V G + V +A Sbjct: 2 NVVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQR 61 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 ++G + + + E D++ + A N FDS+ + + ++P Sbjct: 62 VHGISDAMVQDA----PELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGLVWAP 117 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV--VNRHSAIGDAAATAF 174 + LD +A+RLG+ RH ++GD TA Sbjct: 118 PAEY----------CTVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRHRSLGDVQVTAE 167 Query: 175 CFDMLRHTA 183 F L Sbjct: 168 AFVRLMERL 176 >UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A5KMD9_9FIRM Length = 279 Score = 161 bits (409), Expect = 9e-39, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 57/185 (30%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K I DLETTGLD +E+G L V G+ ++ P + G Sbjct: 35 MLKSYIAFDLETTGLDPMNNEIIEIGALKVRDGKVSER-FMEFIKPQELISPAITGLTGI 93 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + D+ + G N FD + +PF + Sbjct: 94 SNDMVASAR----PARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKMG-- 147 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + K E + L A+ E + H A DA ATA + L Sbjct: 148 ---------IDTLKIAKKVHPELESKSLSALCEHYKIENKAAHRAYFDALATAKLYQTLS 198 Query: 181 HTAAA 185 H Sbjct: 199 HYFEP 203 >UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacteria RepID=A9KMW9_CLOPH Length = 1527 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 60/185 (32%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V D+ETTG +E+G + + G + + ++ Sbjct: 494 EDTCVVFDIETTGFSSVKDKIIEIGAVKIQHGTIVDR-FSTFINPEVPIPYHIQKLTSIT 552 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + E + G N +FD + ++ ++P + + Sbjct: 553 DEMV----IGSRTIEEILPEFLSFCEGCYLVAHNASFDIGFITKKAEFLNIPLTVTS--- 605 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + ++ ++ LD VA+ L + + N H A+ DA TA + Sbjct: 606 --------VDTVGLARVLLNHLNNFKLDTVAKALSISLENHHRAVDDAGCTAEIYLKFLE 657 Query: 182 TAAAH 186 Sbjct: 658 MLRER 662 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 161 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 55/183 (30%), Gaps = 17/183 (9%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + +V+DLETTG +E+G++ ++ E + P + G Sbjct: 1 MN-RFVVIDLETTGHAPSKNDKIIEIGMVIIEGDEIIDTKT-TFFNPGQPIPPFITNLTG 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + ++ L + N FD + + + V Sbjct: 59 ISDDDVADA----PLFTEKALSIKSILEDSYIIAHNVNFDLGFLNAELKENGIDRLHNQV 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L ++ L +++ + + H A+ DA TA F L Sbjct: 115 ----------LDTVELSRILFPTAPGYKLSQLSDHFNLQHDDPHRALSDAYVTAKLFQKL 164 Query: 180 RHT 182 Sbjct: 165 MDK 167 >UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15TC4_PSEA6 Length = 769 Score = 161 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 16/181 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VVD+ETTG E+G + V + + + + G Sbjct: 602 QPYVVVDVETTGGCKPGHRITEIGAVKVIDSKVVD-SWSSLINPERRVPHFITRLTGISN 660 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +++ +++ F N FD + F Sbjct: 661 DMVEDA----PLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAF-------- 708 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L + + L +++ G+ + N H A+ DA A A M+ Sbjct: 709 ---SMPKLCTVREMRKYYPGSPSYSLGKLSKEYGLSLDNHHRALCDAQAAAELLIMVNEK 765 Query: 183 A 183 Sbjct: 766 K 766 >UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB Length = 688 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 58/186 (31%), Gaps = 19/186 (10%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 +V D ETTGL V++ L + G L V P + ++ + Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRVHHISD 553 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A D+ +G N FD + + F Sbjct: 554 DMVQDA----PDIIEAGRRFHDFCQGAVLVAHNAPFDLAFLRLKEKVIGRRFDNPV---- 605 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLR 180 L D + LDA+ ER G +P RH+A+GD ATA F + Sbjct: 606 -------LCTVLMSAGLFDHSGQHTLDALCERFGITIPPEARHTAMGDTVATAEVFVRML 658 Query: 181 HTAAAH 186 A Sbjct: 659 GLLQAK 664 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 17/187 (9%) Query: 1 MA-KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M ++ +V+D+ETTG +++ + ++ G+ + + ++ Sbjct: 1 MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITER-FSKYINPNKSIPAFIEQLT 59 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + E Q EV L G F N FD V + Sbjct: 60 GISNQMVENE----QPFEAVAEEVFQLLDGAYFVAHNIHFDLGFVKYELHKAGFQLPDCE 115 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 V L ++ E L ++E L + H A DA T F Sbjct: 116 V----------LDTVELSRIVFPGFEGYKLTELSEELQLRHDQPHRADSDAEVTGLIFLE 165 Query: 179 LRHTAAA 185 + Sbjct: 166 ILEKLRQ 172 >UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clostridiales RepID=B8FYI4_DESHD Length = 1447 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+DLETTG T E+G++ + G+ + V + +E+ + Sbjct: 423 TYCVLDLETTGFSAATEKITEIGIMKIQGGKIID-QFGCFVNPEKPIPARVVEVTNITDD 481 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + ++ +++ G+ N FD + F Sbjct: 482 MVRDA----ETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFD-------- 529 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + K + L +A+ LG+ V H A+ D T F+++ Sbjct: 530 ---YTYLDTLSLAKELFPDYKTYKLGRIAKNLGIKVEVAHRALDDVGTTVKVFNIMVDML 586 Query: 184 AAH 186 Sbjct: 587 KER 589 >UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacillus RepID=Q81AF9_BACCR Length = 315 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 47/182 (25%), Gaps = 16/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D ETTG + ++V + E + V + + G Sbjct: 9 DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVD-QFVSYVNPERPIPDRITSLTGITNY 67 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +L N N +FD + +P V Sbjct: 68 RVSDA----PTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKV---- 119 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + K + L+ + LG+ + H+A D A + Sbjct: 120 ------IDTVFLAKKYMKHATNHKLETLKRMLGIRLS-SHNAFDDCITCAAVYQKCAAIE 172 Query: 184 AA 185 Sbjct: 173 EE 174 >UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5W2_RUMGN Length = 219 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 16/181 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V DLETTG+ + +E+ + V G + V +A ++NG + Sbjct: 13 PDYTVFDLETTGISANMDDIIEISAVKVKGG-IVQDTFSTLVNPGRHIPAQATKVNGITD 71 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 + + A E ++ + G N +FD + R+ Sbjct: 72 QMVSEA----PLIREAMTEFLRFVGEDILVGHNIQSFDMKFIYREVEELFQETVSNDF-- 125 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + L +AE G+ H A+ D CF+ + Sbjct: 126 --------IDTLYMARKCLPELKHHRLTDLAEHFGISSKGAHRALNDCVMNQKCFEEMAK 177 Query: 182 T 182 Sbjct: 178 L 178 >UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC6_9FIRM Length = 226 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 16/185 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ DLETTG+ +E+ + V G+ + V A +N + Sbjct: 15 RDYVLYDLETTGISSLYDEVIEISAVKVRNGKIVD-EFSELVNPGRPIPYAASSVNNISD 73 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGR 121 + + E + + AG N A FD + R Y Sbjct: 74 KMVENAR----SFEKVLPEFLAFAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDY-- 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + A KL + L +AE G+ H A+ D F+++ Sbjct: 128 --------IDTLAIAKLCFPEWKHRKLSDLAEHYGISTKGAHRALADCRMNQQVFELMAK 179 Query: 182 TAAAH 186 + Sbjct: 180 ESGGT 184 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 159 bits (404), Expect = 4e-38, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 63/185 (34%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYY 61 V D ETTGL+ +++G + V G+ L ++ ++ ++G Sbjct: 543 TYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGIT 602 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + N AFD + + + F Sbjct: 603 ADMLAGQ----PVIEAVLPSFHAFAADTVLVAHNAAFDMRFLQLKEDLTGLRFDQPV--- 655 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + L+A+AERLG+ VV RH+A+GDA TA F L Sbjct: 656 --------LDTLLLSAVIHPNQDSHRLEAIAERLGITVVGRHTALGDAMVTAEVFLKLVP 707 Query: 182 TAAAH 186 A Sbjct: 708 LLAEK 712 >UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAB9_9FIRM Length = 525 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 21/183 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ + D+ETTGLD +EVG + + G ++ V +A IN Sbjct: 50 KRYVAFDVETTGLDSKKDRIIEVGAILFENGHTVE-TYSSLVNPEVKISKEATTINHITN 108 Query: 63 RGLYREALTEQQTAVAWGEVQDW-----LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 + + + E+ + N FD + +++ + Sbjct: 109 GMVKKA----PTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYD---- 160 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ L + + I VA+ + H AI DA Sbjct: 161 -------AQILCLDTLSLSRKIIPGLSNYKQTTVAKHFNIKNKQEHRAISDAEVCGEILW 213 Query: 178 MLR 180 L Sbjct: 214 KLL 216 >UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4KA24_THASP Length = 769 Score = 159 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 17/184 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 V D ETTGL+ ++VG + G+ L V+ P++ +I+G Sbjct: 579 YTVFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPERPLAPESAKIHGITS 638 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + N AFD + + + F Sbjct: 639 EMLRGQ----PTIDKVLPAFHAFAADTVLIAHNAAFDMRFLQLKEEQTGLRFDHPV---- 690 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + E L+A+AERLG+ +V RH+A+GDA TA F L Sbjct: 691 -------IDTLLLSAVVHPNQESHRLEAIAERLGLTIVGRHTALGDAIVTAEVFLKLIPL 743 Query: 183 AAAH 186 A Sbjct: 744 LAEK 747 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 159 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 15/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D+ETTGL +E+G + + G + + V + + G Sbjct: 83 PRSFVALDVETTGLRPARHRIIEIGAVRYEDGCCVER-FSVLVNPHRRLPVYIVRLTGIR 141 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L LT + +L +T G N FD + + P Sbjct: 142 DEDL----LTAPSFVDVAAAFRVFLGESTVIGYNVGFDLDFLNAELRRIGQGPLPN---- 193 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + LDA+ +G+ RH A+ DA ATA + L Sbjct: 194 ------PALDVLPLARALLTANGRYDLDAICRSIGLARGTRHRALPDAEATAVLYLHLVE 247 Query: 182 TAAA 185 A Sbjct: 248 RAEQ 251 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 159 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 17/186 (9%) Query: 1 MAKQLIVVDLETTGLDYD--TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M+K+ +VVDLETTG + ++ + V+ GE L + P E+ Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEI-FSSFINPKREIPPFITELT 59 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G E + + V + L+G F N FD + + Sbjct: 60 GIDESMVKQA----PLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYT----- 110 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + ++ + + L +A++ + H A DA ATA F Sbjct: 111 -----EIHCPKVDTVELAQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAELFLQ 165 Query: 179 LRHTAA 184 + Sbjct: 166 FLNEIE 171 >UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales RepID=A1SLE5_NOCSJ Length = 601 Score = 158 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 53/183 (28%), Gaps = 14/183 (7%) Query: 4 QLIVVDLETTGLDYDTAL-PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVDLETTG + E+G + V GE + V + G Sbjct: 29 TFCVVDLETTGGSAEGGAMITEIGAVKVRGGE-VLGEFQTLVNPRTEIPAFIAVLTGISN 87 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A ++ G+ N FD + P+ Sbjct: 88 SMVADA----PPVEAALPAFLEFAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPGFE---- 139 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A A ++ D L ++A+ G H A+ DA AT L Sbjct: 140 ----VVDTARLARRVVSRDDAPNCKLSSLAKAFGSTTTPNHRALSDARATVDVLHGLMER 195 Query: 183 AAA 185 Sbjct: 196 LGG 198 >UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJN1_9PROT Length = 735 Score = 158 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYY 61 V D ETTG++ +++G + + G L V+ P+ + I+G Sbjct: 544 TYTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRIHGIS 603 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + V + D+ N AFD + + + FS Sbjct: 604 DDMVRGQ----PNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFSQPV--- 656 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + E LD++AERLG+ + +RH+A+GDA ATA F + Sbjct: 657 --------LDTLLLSGVLHPNQESHQLDSIAERLGIGIEDRHNALGDACATAEVFLKMLP 708 Query: 182 TAAA 185 A Sbjct: 709 LLAQ 712 >UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class) RepID=A5UUI5_ROSS1 Length = 956 Score = 158 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 20/185 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + I +D+ETTGL+ +E+ + + E L V+ + + + + G Sbjct: 1 MNQIYIAIDVETTGLEAGVDEIIEIAAVKFNADEVLE-TFSTLVQPVHSLPLNSSRLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + A +L+ G N FD ++ Q + P Sbjct: 60 TADMLASA----PRFAEVAPRFAAFLKNYPLVGHNVEFDLRMLRAQGMRLPQPA------ 109 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L + T L A+A LG+ H A+ DA T F L Sbjct: 110 ---------FDTFELATLLMPRTPAYRLSALAATLGIHHDEAHRALSDADVTRQIFLYLL 160 Query: 181 HTAAA 185 A Sbjct: 161 RRIEA 165 >UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A7U0_THEAQ Length = 627 Score = 158 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 21/183 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYER 63 DLETTGLD + +G +++ L + V+ + E++G Sbjct: 443 YTAFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTWE 502 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + +L G+ N AFD + + + PL Sbjct: 503 MLKDK----PKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRK----VGIDQPPL------ 548 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L + L+ +AER GVPV+ RH+A+GDA TA + + Sbjct: 549 ------VDTLLLAHLLFPDLKDHRLERLAERFGVPVLGRHTALGDALMTAEVYARMIPLL 602 Query: 184 AAH 186 Sbjct: 603 KER 605 >UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli RepID=DPO3_LACSS Length = 1446 Score = 158 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 63/185 (34%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + ++ D+ETTGL +E+ + + GE + ++ ++ Sbjct: 422 SAEYVIFDVETTGLSAVYDSIIELAAVKMRDGEVV-ASFDEFIDPERPLSAFTTQLTSIT 480 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ A +++ AG N +FD + + Sbjct: 481 NEMVHGAKKE----AEVLAMFKEFTGDAVLAGHNVSFDMGFLNAGYERNDIDL------- 529 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + ++ + LD++ +R + + + H A DA +T + L Sbjct: 530 IDNPVIDT---LELSRMLHPEYKNHKLDSLTKRYKINLEHHHRANADAESTGYLLYKLEK 586 Query: 182 TAAAH 186 AA + Sbjct: 587 EAAEN 591 >UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA Length = 929 Score = 158 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 17/187 (9%) Query: 1 MAK-QLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M K + VVDLE TG D+D +++G V+ G+ + V ++ Sbjct: 1 MNKTKYAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVD-TFQSKVNPQRPIPAGITKLT 59 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + + ++ D F N FD + ++ V P Sbjct: 60 GITDEQVQNAPKFNDIVDEVYRKLVD----TVFVAHNVEFDFPFLNQELVRSGYPELN-- 113 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + ++ T+ L + L + + HSA DA ATA Sbjct: 114 --------IPAVDTVSLSQIVFSFTKGYRLRDLTSYLKIEHDDPHSADSDAIATANLLIA 165 Query: 179 LRHTAAA 185 ++ Sbjct: 166 IKKNLQQ 172 >UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDG4_9ACTO Length = 550 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 58/187 (31%), Gaps = 19/187 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VVDLETTGL E+G + + G + V+ P + G Sbjct: 29 WVVVDLETTGLGAGAD-ITEIGAVRIRDGAVVD-EFSSLVKPSRPIPPFITSLTGITPAM 86 Query: 65 LYREALTEQQTAVAWGEVQDWLR-----GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + A +W N +FD + R + P+ + Sbjct: 87 VADA----APIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRV-- 140 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ D A A L L VA G V H A+GDA ATA Sbjct: 141 ------RIVDTLALARLALPRPLVRNHKLGTVASYFGTATVPEHRALGDARATAEILLGF 194 Query: 180 RHTAAAH 186 AA Sbjct: 195 IDLLAAA 201 >UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MME8_9FIRM Length = 1605 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 18/188 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +IV D+ETTGL E+G + + E + V + E+ G Sbjct: 588 EDDIIVFDIETTGLHPANERITEIGAVKLRNMEIVER-FSTFVNPMMPIPSNITELTGIT 646 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + VA + + + N FD + + F Sbjct: 647 DDMVADA----PTEDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAAARMEKSFDNPV--- 699 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + K + + LD +A+ + + H A+ DA + + + Sbjct: 700 --------VDTLSIAKAALKGIKNYKLDTIAKYFKLGDFDHHRAVADAEMLCMIYMHIVN 751 Query: 182 --TAAAHL 187 A L Sbjct: 752 DTRKTAKL 759 >UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidetes RepID=A0LZ46_GRAFK Length = 457 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 55/178 (30%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG Y+ E+ + D + + V P + + G Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGQKVVD-QFISLVNPEQPIQPFVVNLTGINNDM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + N FD I+ + + + Sbjct: 61 LKNA----PKFYEVAKRIVEITEDCILVAHNAKFDYRILRTEFRRLGFEYERKS------ 110 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L K I L + LG+P+ +RH A GDA AT F ML Sbjct: 111 -----LCTVELSKKLIPGLPSYSLGKLVRSLGIPLSDRHRAAGDAQATIKLFKMLLAK 163 >UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=Actinomycetales RepID=Y2191_MYCTU Length = 645 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 52/187 (27%), Gaps = 19/187 (10%) Query: 2 AKQLIVVDLETTGLDYDT------ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM 55 +VVDLETTG E+G + V G + V + P+ + Sbjct: 40 ETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGA-VLGEFATLVNPQHSIPPQIV 98 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 + G + ++ + N FD + + + Sbjct: 99 RLTGITTAMVGNA----PTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWP 154 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 ++ A L+ D L A+A V H A+ DA AT Sbjct: 155 --------QPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDV 206 Query: 176 FDMLRHT 182 L Sbjct: 207 LHALIER 213 >UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM31_9BACT Length = 1428 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 54/182 (29%), Gaps = 16/182 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V DLETTGL+ +E+G + + E + V+ + G E Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIKMKGSE-VLGTYSTFVKPEKELSAMITSLTGITEDM 476 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E + G N +FD V + Sbjct: 477 LSEAR----PIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKH----------FGGD 522 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + + A K ++ LD V +RL + + H A DA TA A Sbjct: 523 WEMPCIDTLALAKSLF-RSKSYSLDNVVKRLKLGHFDHHRAFEDAKVTAEVLKKFVQLAK 581 Query: 185 AH 186 Sbjct: 582 KR 583 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M+ + +VVDLETTG ++ + ++ G+ + + E+ G Sbjct: 1 MSNKYVVVDLETTGNSAKKGDKIIQFAAVVMEGGKIID-QYSSLLNPGKEIPAFIEELTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + A +V + L F N FD + + + + P V Sbjct: 60 LNDSMVSDA----PVFAEIAPKVMELLEDAYFVAHNVLFDLSFLQEELLDAGFPGFYGPV 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + ++ L ++ + G+ H A DA ATA + Sbjct: 116 ----------IDTVELARTVLPCSDSYKLSDLSAKEGIMHDRPHQADSDAYATAKLLHIF 165 Query: 180 RHTAAA 185 Sbjct: 166 LERLEE 171 >UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flexibacteraceae RepID=D2QE10_9SPHI Length = 180 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VD+ETTG E+ + D + + H + P + G + Sbjct: 2 YCIVDVETTGGVKGPTRLTEIAIFRHDGQQVVD-SFHSLLNPGCPIPPFIRHLTGISDEM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A +V + + F N FD + + ++ F Sbjct: 61 VQDA----PTFADVANDVLNITQDAIFVAHNVGFDFSFIQKELNWLGHDFLR-------- 108 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + + L + L +P+ RH A GDAAAT F+ML A Sbjct: 109 ---RTLCTVRTSRKLLPGYPSYSLGKLCRSLEIPLNGRHRAQGDAAATVLLFEMLLKNDA 165 Query: 185 AHL 187 L Sbjct: 166 QGL 168 >UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CLT9_9FLAO Length = 375 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 57/179 (31%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+D+ETTG +D E+ + D E + + P ++ G + Sbjct: 2 TYAVLDIETTGGKFDEEGITEIAIHRFDGHEVVD-TFISLINPERPIQPYVQKLTGIDPK 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + T + + + R + N FD I+ + F Sbjct: 61 MVQ----TAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYNFERK------ 110 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + I E L + LG+PV NRH A GDA AT L Sbjct: 111 -----TLCTVDLSQRLIPDAESHSLGKLVRSLGIPVSNRHRANGDALATLKLLQHLLDR 164 >UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquificaceae RepID=DPO3E_AQUAE Length = 202 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 15/180 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+DLE TG D + + +++ + V+ G + V + ++ G Sbjct: 18 TFVVIDLEATGFDVEKSEVIDLAAVRVEGG-IITEKFSTLVYPGYFIPERIKKLTGITNA 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + E +++ N G D + + Y Sbjct: 77 MLVGQ----PTIEEVLPEFLEFVGDNIVVGHFVEQDIKFINKYTKQYRGKKFRN------ 126 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + L +AE G H A+ DA TA F + Sbjct: 127 ----PSLCTLKLARKVFPGLKKYSLKEIAENFGFETNGVHRALKDATLTAEIFIKILEEL 182 >UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA Length = 412 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 +V D ETTGL V + + + G L V +++ +G Sbjct: 218 TFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRPIPAESIRYHGIT 277 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + V + + ++ N AFD + + + F Sbjct: 278 DDMV----VDKPPAGVVLPQFRSYVADAVLVAHNAAFDLKFLRMREKDMGIRFD------ 327 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L P LD + +R G+ + +RH+A+GDA TA Sbjct: 328 -----IPVLDTMILSNFLDGPDAGHSLDDICDRYGIEITDRHTALGDAMVTAAVLLRQIE 382 Query: 182 TAAAH 186 Sbjct: 383 ALEGR 387 >UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS5_PARDP Length = 659 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 59/183 (32%), Gaps = 17/183 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +V D ETTGLD V++ L + G V+ P + ++G + + Sbjct: 454 VVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITDAMV 513 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 A + N FD + R F Sbjct: 514 AGA----PDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHFDNQV------- 562 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + LDA+ ERLG +P RH+A+GDA ATA + L Sbjct: 563 ----LDTVLLSAMLWGQSAPHSLDALTERLGIVIPPEARHTAMGDARATAEAYLRLIAAL 618 Query: 184 AAH 186 A Sbjct: 619 EAK 621 >UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit family protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FXM2_9RHIZ Length = 466 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 18/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 V D ETTGL V++G + + G+ + V+ + +I+G ++ Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASSKIHGITDK 333 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + A A ++ + + N FD + + R + F Sbjct: 334 MVMGQ----PRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAFDHP------ 383 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCFDMLRH 181 + + TE LD V ERLG+ + +RH+A+GDA TA + Sbjct: 384 -----IVDTVLVSAIIFGTTERHMLDVVCERLGIRIEKKDRHTALGDARVTAEAMKRMLP 438 Query: 182 TAAAH 186 A Sbjct: 439 LLEAR 443 >UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (Modular protein) n=2 Tax=Burkholderiales RepID=B3R8V7_CUPTR Length = 532 Score = 156 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 17/179 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++ ++ VDLETTG D E+G++ V + + ++ + P + G Sbjct: 29 LSRPIVFVDLETTGADAQRDRITEIGVVEVGPDGIVEWE--TLLDPGMSIPPFIQRMTGI 86 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + L+G F N FD + + F Sbjct: 87 SDDMVRGQ----PTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTF------ 136 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R L + E GLDA+ R G+ RH A+ DA + + Sbjct: 137 -----RADVLCTVRLSRSLFPSVERHGLDALIARFGLTPKGRHRALADAELLWQFWQKI 190 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 156 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 53/170 (31%), Gaps = 16/170 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D+ETTG + +EV + + G + ++ + + G + Sbjct: 4 RSFVAIDVETTGTSPEHDRLIEVAAVRFEDGREI-GCFSRLIDPGCPVPQRIQHLTGIHP 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + ++ +L N FD + + Sbjct: 63 AMLAGK----PRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSY--- 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 ++ + L +AE LG+P+ + H A DA A Sbjct: 116 --------DTAELARVALPLARNHRLATLAELLGLPLEHHHRAEDDARAC 157 >UniRef50_C7G8J4 Putative DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8J4_9FIRM Length = 235 Score = 155 bits (393), Expect = 5e-37, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+DLE TGL+ T +EVG + V +++ I + K E+ G E Sbjct: 2 QDYVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDKFGAILCQ-NVKIPEKVTELTGITE 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + +++ + G N FD + + V ++MP Sbjct: 61 AMVQGGMEK----EEAMRQFFEFIGEDIIVGQNVIFDYGFLKQWAVNHNMPLERSA---- 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + + + L+++ GV N H A DA T ++ LR Sbjct: 113 -------VDTLKLARKFLPKEQKKDLESLCAYFGVKRENAHRAFDDAYETWQIYEALRER 165 Query: 183 AAAH 186 Sbjct: 166 YEEE 169 >UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SPM0_9CAUL Length = 717 Score = 155 bits (392), Expect = 7e-37, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 16/179 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG E+G + + GE + + P E+ G Sbjct: 545 YTVVDIETTGGQSANERVTEIGAVKIRNGEIID-TWQSLINPERRIPPFITELTGISNAM 603 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A + +L+G F N FD ++ + PF Sbjct: 604 VRDA----PRFADIADDFDAFLKGTVFVAHNVNFDYGFLSAEYRRLERPF---------- 649 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 R + A+ + + GL ++ G+ + N H A+ DA A A ++ Sbjct: 650 -RYPKMCTVASMRRHFPGLAAYGLGPLSREFGIELKNHHRALSDAMAAAELLKLINERR 707 >UniRef50_A9F4T5 DNA polymerase III, epsilon subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F4T5_SORC5 Length = 258 Score = 155 bits (392), Expect = 7e-37, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 7/182 (3%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + VD+ETTG D +E+G++ +GE L + + ++ I+G + Sbjct: 43 QPIAFVDVETTGRDPAGDRIIELGIVIGRSGEILTR-YNWLIHPGRPIPAESTAIHGIKD 101 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A E+ +G A N FD + + + M Sbjct: 102 ADVEGK----PSFAEVAEEILGCFKGAIPAAYNATFDRSFLLAELERVGMRPREP--PPA 155 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + E L +A RLG+ + H A DA A L Sbjct: 156 MRREVDWVDPLTFARELYKNEESRALGDMAARLGISLEKAHRATDDAEAALQVLYALAKD 215 Query: 183 AA 184 Sbjct: 216 PR 217 >UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIX0_KOSOT Length = 185 Score = 155 bits (392), Expect = 7e-37, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 17/187 (9%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEIN 58 M K +V+D ETTG +E+ + + G+ + H V I+ Sbjct: 1 MNKVYVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIRIPAYISGIH 60 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + +E + + +++L G + D Sbjct: 61 GLKNEDV----TSEPTISDVFPRFKEYLGNAIIVGHSIEVDMKFFDIACKEIG------- 109 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + L ++ L +A+RL + H A+ DA T F Sbjct: 110 TFPLSNQYIDTLKIAK----DLFKEGSYSLAELAKRLKIKDAPTHRALDDARVTGKVFLA 165 Query: 179 LRHTAAA 185 + Sbjct: 166 MVKKLGG 172 >UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae RepID=C1DWW1_SULAA Length = 205 Score = 154 bits (391), Expect = 9e-37, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYER 63 ++VDLETTGL+ + +E+ L V+ G + H V+ ++ G Sbjct: 11 FLIVDLETTGLNPVNSEIIEIAALRVEGG-IVVDKFHTLVKPSIGFIPTYITKLTGITNA 69 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + + + + N FD + + + V Sbjct: 70 LV----VDKPTIEEVFPQFLKFSENSIIVAHNAQFDMSFLNSVSYQITGRSIQNPV---- 121 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L K + L +A +P +H A+ DA T F + Sbjct: 122 ------LCTQNLAKRLFPDLPSKSLVNLAYHFNIPYNKKHRALEDALVTYELFKKIIDYL 175 >UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEU3_ACHLI Length = 1504 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 55/188 (29%), Gaps = 15/188 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V D+ETTG + +E+ V G + + I + Sbjct: 412 YTVFDIETTGFSFTRDKIIEIAAYKVRGGFIAER-FEVLINPEEQLSETTKRITNITDEM 470 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM---PFSPLTVGR 121 + E ++++G N +FD + + + PF+ + Sbjct: 471 VENEK----TIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLN 526 Query: 122 VWHHRLADLAAYAAGKLNI-------DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + + + L A+ + V + H AI DA ATA Sbjct: 527 IARYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEAHHRAIYDAYATAE 586 Query: 175 CFDMLRHT 182 F + Sbjct: 587 VFLNMLQD 594 >UniRef50_C0FUI4 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUI4_9FIRM Length = 241 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +V+DLE TGL+ T +E G V + + K + + G Sbjct: 1 MLTDYVVIDLEMTGLNAKTDRILEAGAARVRGN-VVTATFSEIINPKRKLPEKVVSLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + T+ A D++ + G N FD + + + V + F Sbjct: 60 TNEMAAQGKETDATLAA----FFDFIGEDILVGQNVIFDYSFLKQWAVNHKRTFERNA-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + + L ++ G+ V+ H A+ D T F+ ++ Sbjct: 114 ---------VDTLKLARKFLPQEQKKDLASLCSYFGIERVHAHRALDDVMETQQIFEQMQ 164 Query: 181 HTAAA 185 A Sbjct: 165 KMYEA 169 >UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI99_EUBR3 Length = 245 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K V+DLE TGL +E+G V GE + V + E+ G + Sbjct: 8 KNYTVIDLEMTGLSAKNDKIIEIGAARVRGGEIVD-TISTLVNPKQHIPQRVQELTGITD 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + +++ + G N FD + + + V + S Sbjct: 67 SDVENA----ADMDEAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVNHKRTLSLNAY--- 119 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + + L+ + E GV N H A+ DA T F+ L Sbjct: 120 --------DTLKIARKCLPAEQSKKLEDLCEYFGVSRKNAHRALDDAIETKQIFEKLLAL 171 Query: 183 AAAH 186 Sbjct: 172 MDEK 175 >UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=C5CGL7_KOSOT Length = 1430 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 58/186 (31%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +V DLETTGLD +E+G + + G + V+ K I G Sbjct: 415 MNSIYVVFDLETTGLDPSADEIIEIGAVKLK-GTEVIGEFSSFVKPERNLSEKVTRITGI 473 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 +R L + + ++ + + N FD V Sbjct: 474 SDRELEDA----PSLSEVLPKFLEFCKDSVLVAHNATFDYRFVRNAVKQL--------YN 521 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 W D A + L L D V +RL + H A DA TA F L Sbjct: 522 EDWKLPYIDTLALSKSLLKSKSYSL---DNVVKRLKLGDFEHHRASEDARITAEVFKKLL 578 Query: 181 HTAAAH 186 A Sbjct: 579 SMAKKR 584 >UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=A8H432_SHEPA Length = 215 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 50/186 (26%), Gaps = 18/186 (9%) Query: 2 AKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A +IV+D ETTGL +E+G + + G+ + + G Sbjct: 15 ADTVIVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDR-FQQLMNPGFRISGFIESYTGI 73 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + D++ N +FD + + + + Sbjct: 74 SNAMLADA----PSCEEVMAQFADFIGDYNLVAHNASFDQRFLDAELKRINCHYLGQFA- 128 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDML 179 + + L ++ + H A+ D+ TA + + Sbjct: 129 ----------CSMLIARRLYQAAPNHKLGSLVSYKNIQHDGVFHRALADSEMTASLWLAM 178 Query: 180 RHTAAA 185 Sbjct: 179 LEDLQQ 184 >UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C5FA2 Length = 285 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 60/187 (32%), Gaps = 18/187 (9%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVD+ETT +E+G + + GE + V K E+ Sbjct: 15 NEFVVVDIETTAFSIQKGGRILEIGAVKIKNGEIVD-NFSTLVNPELKIPKKITELTKIT 73 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDS-TIVARQRVTYSMPFSPLTVG 120 + + +++ + N +FD + T + S Sbjct: 74 NDMVKDA----PYIGNVLQKFNEFISDSVIVAHNASFDWDRFLKPALATIGIKSSHKV-- 127 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + K + L + L VP+ H AI DA ATA CF L+ Sbjct: 128 ---------MDTVSLSKFTFPDKKKHTLIDLCSYLEVPLEKNHRAIDDAIATAKCFLKLK 178 Query: 181 HTAAAHL 187 A L Sbjct: 179 ALNAEKL 185 >UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Actinomycetales RepID=A0QF17_MYCA1 Length = 643 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 53/188 (28%), Gaps = 22/188 (11%) Query: 4 QLIVVDLETTGLDY------DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 +VVDLETTG E+G + V G + V+ + P+ M + Sbjct: 39 TFVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDG-VVLGEFATLVDPQRSIPPQIMRL 97 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGN---TFAGSNPAFDSTIVARQRVTYSMPF 114 G + ++ + N FD + + + Sbjct: 98 TGITTAMVSDA----PAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAW 153 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 R+ A L+ + L ++A V H A+ DA AT Sbjct: 154 P--------RPRVLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARATVD 205 Query: 175 CFDMLRHT 182 L Sbjct: 206 VLHALIER 213 >UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0P1Y1_9CLOT Length = 235 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 16/180 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K + DLETTGL D+ +E+G + + G+ + + + + G Sbjct: 2 KDYVAFDLETTGLSPDSDQIIEIGAVKIRDGKIS-GKYNCIIHPEIEVSDFIINLTGISR 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + E ++ G N FD + ++ PF Sbjct: 61 DMLRKGI----PLKEGVEEFLEFSGDLPILGHNVMFDYKFMKMAAASFKYPFEKTG---- 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + E + L+ + H A DA ATA F+ ++ Sbjct: 113 -------VDTLKVARKLLTGLENKKLETLCAHYHYVNQAAHRAYDDALATAVVFEQMKKE 165 >UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive type) n=3 Tax=Lactobacillus delbrueckii RepID=Q049V0_LACDB Length = 1411 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 57/179 (31%), Gaps = 15/179 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ ++ D+ETTGL +E+G + + GE + + + + + Sbjct: 390 QEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDR-FDKFINPHHPLSETTINLTSITD 448 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + AV + D+ + G N FD V P V Sbjct: 449 EMVQAA----DDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPV--- 501 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + +L LD++ + V + + H A DA AT + L Sbjct: 502 -------VDTLEVSRLLHPEQSRHTLDSLCRKYNVALEHHHRANQDAEATGYLMFKLLD 553 >UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1K0_9GAMM Length = 488 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 16/178 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++++D ETTG E+ L+ V+ G + + L P + G Sbjct: 8 PPSMVILDCETTGGRASRDRLTEIALIEVEDGHVVKR-WQTLLNPLRPIPPWITRLTGIT 66 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E+ L G N FD + + + Sbjct: 67 DATVADA----PTFDEIADELFACLDGKVIVAHNARFDYSFLRQSFQRCGYTLGNK---- 118 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L + + GLD + ERLG+ + NRH A+ D F+ + Sbjct: 119 -------TLCSVKLSRQLFPEHRSHGLDRIIERLGLTIDNRHRAMADTEVLLAFFEHI 169 >UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria RepID=B1Y7R5_LEPCP Length = 731 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 61/181 (33%), Gaps = 17/181 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 V D ETTGL+ D +++G + G+ V+ P + I+G Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQRPIPPAGIPIHGIKP 600 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + N AFD + ++ + F Sbjct: 601 DMVAGQ----PTIDHVLPAFHAFAQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQPV---- 652 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + E L+A+AER + VV RH+A+GDA TA F L Sbjct: 653 -------LDTLLLSAVVHPNQESHRLEAIAERFSITVVGRHTALGDAMVTAEVFVRLIPL 705 Query: 183 A 183 Sbjct: 706 L 706 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 14/184 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +DLETTG+D +EVG + V G + V + + G Sbjct: 25 PRTFVGLDLETTGVDSRVDRIIEVGAVRVVDGR-VADTFESFVNPGCPIPSDIVHLTGIS 83 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + +++ G+ + FD+ + P + G Sbjct: 84 DADVAGA----PTIDEVLPRIIEFIGGSPIVAHHAPFDTGFLDEAAG--GRPGLLVGRGG 137 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 V+ + + L A +P H A DA A + F L Sbjct: 138 VF-------DTLPLTRALLPRLPNHRLATAARFFDIPTGRSHRATDDARAVSDLFLALLG 190 Query: 182 TAAA 185 Sbjct: 191 VLDQ 194 >UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma RepID=Q2NJG3_AYWBP Length = 1572 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V DLETTGL +E+ + + G + ++ I Sbjct: 478 EATYVVFDLETTGLSNVRDKIIEIAGIKIKNGNKI-GEFQKFIDPQQKLTKTITNITNIT 536 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L + Q + + + N +FD + + + P + Sbjct: 537 DEMLQGQ----QTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEPKPI-- 590 Query: 122 VWHHRLADLAAYAAGKLNIDPT-ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + A + + L +A V + + H A+ DA AT+ F + Sbjct: 591 --------IDTMALSQRYFSNLLKYFSLKRLATVFKVKLEDHHRALADATATSEIFIKMI 642 Query: 181 HTAA 184 A Sbjct: 643 DQLA 646 >UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF57_9CLOT Length = 319 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 15/179 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V+DLETTG D +E+G L + GE + + D +++ G Sbjct: 19 PTDYVVIDLETTGYDPHRDEIIELGALRIHEGEVVE-SFSSLTKPQRDLDDYIIQLTGIS 77 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + D++ + G N FD + + S+ + Sbjct: 78 NEMLASA----PELSDVFPRYLDFIGDSIVVGHNVHFDVNFIYDTCIKESLKLFTNDL-- 131 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + L V+ + V H ++ D T CF+ R Sbjct: 132 --------VDLLWLSRKLLPDLTSHKLCRVSSHFNICVEGMHRSLFDCKTTFECFEKCR 182 >UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit family n=14 Tax=Actinomycetales RepID=D1BFZ9_SANKS Length = 616 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 13/182 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVDLETTG A E+G + V GE + V + G Sbjct: 61 TFVVVDLETTGGSSKDAGITEIGAVKVRGGEVI-GEFQSLVNPGHPVPAFIARLTGITTL 119 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + ++ RG N FD + + + + + Sbjct: 120 MV----SSAPSIELVLPSFLEFARGTVLVAHNAPFDISFLKAAARSMDLAWPGN------ 169 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 ++ D A + D L +A + H A+ DA AT L Sbjct: 170 --QVLDTVPLARRVVTRDEAPNHKLGTLAALFRATITPDHRALSDARATVDVMHALFDRM 227 Query: 184 AA 185 A Sbjct: 228 AP 229 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 15/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVDLETTG D + ++ G + V G+ + V + + G Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKII-ANFATDVNPNQVVPKQIQSLTGISNTQ 71 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + +L F N FD +AR+ V P Sbjct: 72 VQKA----PYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPL--------- 118 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + ++ + + L ++E LG+ N H A DA TA +++ Sbjct: 119 -TIPAIDTVELAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEK 175 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 60/182 (32%), Gaps = 20/182 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M++ +V+DLETTGLD VEVGL+ V+ G+ V H V + + G Sbjct: 1 MSRTFVVLDLETTGLDPQADEIVEVGLVRVEDGKP-GAVFHALVRPSRPLPARIKSLTGL 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + V +L G + FD + R Sbjct: 60 DDADLAE----RPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAGY----------- 104 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +L + L+ + L +P H A+ DA A A F L Sbjct: 105 ----RATQAYDTVDLARLVLPGLPSYRLELLCAHLDLPERPGHRAMEDARAAAGLFTALL 160 Query: 181 HT 182 Sbjct: 161 ER 162 >UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IIU0_PSEHT Length = 730 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 16/180 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VVDLETTG E+GL+ V G+ + V + G Sbjct: 564 NRIYSVVDLETTGALKGGNKITEIGLVKVQHGKVID-TWTTLVNPQRHIPGFITSLTGIS 622 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + L G+ F N FD + ++ +PF Sbjct: 623 DSMVSNA----PVFADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVPF------- 671 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++ L + + L +++ + + + H A+ DA ATA +++ Sbjct: 672 ----KMPKLCTVVESRKAFAGLKSYSLGNLSKHFNLNLTSHHRALADATATAQLLLLIQK 727 >UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0M5_PHYMT Length = 1449 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 14/180 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D ETTGL +E+ + + + + + P + + Sbjct: 408 TYVIFDFETTGLSKINDQIIEIAAIKIQNNQIID-EFQTLINPQQELTPFIENLTNISNQ 466 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + + + N +FD + Q + + Sbjct: 467 DLKNQ----PLIATILPKFLKFCENSILIAHNISFDMGFLVNQTKKH--------LNLKL 514 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D A L+ L ++A+ + N H A+ D T F L + Sbjct: 515 NLPFIDTLNLARYCLD-SNLRYFNLKSLAKYFKISFENHHRAMSDVLITKTIFQQLLNYL 573 >UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FIG6_FLAJ1 Length = 459 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 60/180 (33%), Gaps = 16/180 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +VD+ETTG + + E+ ++ + G+++ V P + G Sbjct: 3 NQEYAIVDIETTGGNASGSRITEIAII-IHDGKNVLDRYETLVNPEQDIPPSIFGLTGIN 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + +V + L F N FD + V Q +S Sbjct: 62 NEMVANA----PIFDDISEKVLEMLTDRIFVAHNVNFDYSFVHHQLEQAGFKWSAKK--- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L A + L + L + + NRH A GDA ATA F +L Sbjct: 115 --------LCTVRAARKIKPGLGSYSLGNLCNSLNISLENRHRAGGDADATAILFSLLLE 166 >UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococcus faecium DO RepID=UPI0001BCC2A4 Length = 663 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 15/182 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V D+ETTGL +E+ + + G + ++ +++ G Sbjct: 424 EATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIE-SFDEFIDPGHPLSRTTVDLTGIT 482 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + ++ + N AFD + Y +P + V Sbjct: 483 DGMVRG----SKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV-- 536 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + GL ++++ GV + H AI DA AT + Sbjct: 537 --------IDTLELARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHLAWIFVK 588 Query: 182 TA 183 A Sbjct: 589 EA 590 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 153 bits (386), Expect = 3e-36, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 51/181 (28%), Gaps = 16/181 (8%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +VVDLETTG ++ + V+ E V P E+ G Sbjct: 2 QRYVVVDLETTGNSAKKGDRIIQFSAVVVEGREIKT-QFTSFVNPEKPVPPFISELTGID 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + L + F N FD + ++ P Sbjct: 61 NGMLEEA----PVFSEIAPRIMEILEDSIFVAHNVLFDLPFLQQELKAAGFPPFRG---- 112 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L ++ L +A+ L + H A DA TA Sbjct: 113 ------PSLDTVEFSRIAFPTLNSYKLGDLADSLSLYHERPHRADSDAFVTAKLLLACME 166 Query: 182 T 182 Sbjct: 167 K 167 >UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacter sp. M18 RepID=C6MPJ2_9DELT Length = 835 Score = 153 bits (386), Expect = 3e-36, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 60/185 (32%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYY 61 + +V D ETTGL V + + + G+ H V ++ + Sbjct: 640 EYVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAESTAFHRIE 699 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + + N AFD + +P + Sbjct: 700 DHMVADA----PSMNEVYPQFVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLPLVENPI-- 753 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L TE LDA+A+R+G+ + RH+++GDA ATA F L Sbjct: 754 --------LDTLFLSVGLHSGTEGHSLDAMAQRMGIAIEGRHTSLGDARATAQIFLGLLS 805 Query: 182 TAAAH 186 Sbjct: 806 LLPGR 810 >UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenibacillus RepID=C6D2T0_PAESJ Length = 1437 Score = 153 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + IV D+ETTGL +E+ + + G+ + + ++ Sbjct: 418 TAEYIVFDIETTGLSIINNKIIELAGVKMREGKEVDR-FSTFINPHEKIPYHIQQLTNIN 476 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E + E D++ + N FD + + MP V Sbjct: 477 DEMVKDAPELEPK----LREFIDFIGDSILVAHNARFDIGFIQANLKSIGMPDVTNPV-- 530 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + L+ ++ + V + N H A+ D+ A L + Sbjct: 531 --------LDTLELARFLHPTMKNHRLNTLSAKYKVSLDNHHRAVDDSVALGGVLFGLIN 582 Query: 182 TAAAH 186 AA Sbjct: 583 DAAER 587 >UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FGI7_9BIFI Length = 186 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 54/184 (29%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VVDLETTG+ +E+G + V+ G + V + G Sbjct: 16 TDDYVVVDLETTGISPARDRIIEIGAVRVEHGT-VTAEYSKLVNPGRPVGGFITGLTGIS 74 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + LR +T N FD + + Sbjct: 75 DEMVGNAS----PIEAVLPDFLAHLRPSDTIVAHNANFDINFLYDNCMRTLGKPFSYDF- 129 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L + +R G+ H + DA T C++ ++ Sbjct: 130 ---------IDTLRLSRALFPQERQHRLVDLIQRFGIADEEEHRGLSDALQTVECYERMK 180 Query: 181 HTAA 184 A Sbjct: 181 PLLA 184 >UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26FQ2_9BACT Length = 466 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG E+ ++ + L ++ + G Sbjct: 8 YCVVDIETTGNRMTGNRMTEICIVRMRGDTILDKYSS-LIDPEVLIPDYITTLTGIDNAM 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A E+ ++ + F N FD ++ + F Sbjct: 67 VASA----PVFADVAEEILNFTKDYIFVAHNVNFDYNVLRNEFKRLHHDFKRKK------ 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + I L + + +G+P++NRH A GD AT F L Sbjct: 117 -----LCTVRLSRELIPGMRSYSLGKLCDDIGIPLINRHRAEGDTDATVILFQKLI 167 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 152 bits (385), Expect = 6e-36, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 16/180 (8%) Query: 7 VVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 VVDLETTG + + +++G + V GE + + +++ G ++ + Sbjct: 21 VVDLETTGTNVNHGDRIIQIGCVLVQDGEII-NHFETKINPREKIPRSIVQLTGIEDKDV 79 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + G + L TF N FD + + P Sbjct: 80 RKA----PLFEDIAGTIYSLLAETTFVAHNVNFDFPFLNAELERAGYPSLS--------- 126 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAAA 185 + + ++ + + L + L + + HSA+ DA ATA + L Sbjct: 127 -IPAIDTVTLSQILLPTAKSFRLRDLTSSLHIEHDHPHSAVSDAEATADLLNDLLKRVQE 185 >UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1U9_9ACTO Length = 206 Score = 152 bits (384), Expect = 7e-36, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 50/182 (27%), Gaps = 16/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ VD+ETTGL D+ E+ + G+ + V + G + Sbjct: 16 TLVSVDIETTGLG-DSDAITELAAVKYQKGQVVE-TFSSLVNPGRQIPVFITRLTGIDNQ 73 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN--TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++ N FD+ + + + Sbjct: 74 LVADA----PTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPAS-- 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D ++ L + L +A G+ N H A+ DA + L Sbjct: 128 ------IDTVFFSRALLPRPQVQNHRLGTLAHHFGIKNPNAHRALADAYTCLELYKCLLD 181 Query: 182 TA 183 Sbjct: 182 VL 183 >UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQL3_9ACTO Length = 589 Score = 152 bits (384), Expect = 7e-36, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVDLETTG E+G + V GE++ V + G Sbjct: 43 TFVVVDLETTGAKPGPESITEIGAVKVRGGETV-GEFSTLVNPGQPIPAFITSLTGITTA 101 Query: 64 GLYREALTEQQTAVAWGEVQDW---LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R + A + ++ A N FD + + + Sbjct: 102 MTARA----PRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTWPSV--- 154 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+ D A A + D L +A G H A+ DA AT + Sbjct: 155 -----RVLDTVALARRAFSSDEVPNFKLSTLAGACGATTAPNHRALDDARATVDVLHAML 209 Query: 181 HTAAA 185 Sbjct: 210 GRLGP 214 >UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus RepID=A5LYL7_STRPN Length = 910 Score = 151 bits (383), Expect = 8e-36, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V D+ETTGL ++V + G ++ + E+ G Sbjct: 422 EATYVVFDVETTGLSAIYNDLIQVAASKMYKG-NVIAEFDEFINPGHPLSAFTTELTGIT 480 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E Q++ + N FD + + +P V Sbjct: 481 DDHVKNAK----PLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQPV-- 534 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + GL + +R GV + + H A DA AT + Sbjct: 535 --------IDTLEFARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIK 586 Query: 182 TAAAH 186 A Sbjct: 587 EVAEK 591 >UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cellular organisms RepID=Q1LGD6_RALME Length = 530 Score = 151 bits (383), Expect = 8e-36, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 17/180 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ VDLETTG D E+G++ V V+ L + P + G + Sbjct: 33 RPIVFVDLETTGADAQRDRITEIGVVEVGPDGI--QEWDTLVDPLTSIPPFVQGLTGITD 90 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A+ + + L+G F N FD + + + F Sbjct: 91 EMVRGQ----PTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTF-------- 138 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R L + E GLDA+ R G+ RH A+ DA + + Sbjct: 139 ---RADVLCTLRLSRSLFPSVERHGLDALIARFGLTPKGRHRALADAELLWQFWQKIHEI 195 >UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAB0_9FIRM Length = 225 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ETTGLD + +E+G ++V G F +T E + P + G + Sbjct: 57 YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGRFQTFLTPEPYQSLSPFITNLTGITDS 116 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++D+L G T G N FD + + + Sbjct: 117 DLVGA----PTFREILPRLRDFLGGYTLVGHNVNFDINFL----------YDRIYRETGE 162 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 H L K + L+A+ + G+ N H A+ D T D L Sbjct: 163 HLNNPYLDTKKLAKTVVPGLSHYSLEALCKHFGI-AGNHHRAVDDCELTEKVLDALWRLK 221 >UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBV5_LARHH Length = 493 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 55/171 (32%), Gaps = 19/171 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++VDLETTG E+GL+ V G + V P E+ G + Sbjct: 4 RPYVIVDLETTGGHITRDRITEIGLVEVSHG--VTTRWSQLVNPGQPIPPFIEEMTGISD 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + L G N FD + + + F+ Sbjct: 62 AMVAEA----PPFAELAPALLARLNGKLLIAHNARFDYGFLKNEFRRLGLTFTTDP---- 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAA 171 L + LD++ R G+ V RH A+GDA A Sbjct: 114 -------LCTVKLSRRLYPQHAKHSLDSLIARHGIDVPPGMRHRALGDAEA 157 >UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CX37_DEIDV Length = 202 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 62/190 (32%), Gaps = 23/190 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA-------ADPKAME 56 ++V DLETTGL + VE+G L V G+ + + T+ + A Sbjct: 2 NVVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQR 61 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 ++G + E +++ + N FD + Q M ++P Sbjct: 62 VHGISNEMVRSA----PTIEEVLPEFLEFVGDSAVVAHNVGFDCGFMRAQARRLGMVWAP 117 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV--VNRHSAIGDAAATAF 174 + L +AERLG+ RH + GD TA Sbjct: 118 AGEH----------CTVQLSRRAFPKERAHNLTVLAERLGLNFAPGGRHRSFGDVQVTAH 167 Query: 175 CFDMLRHTAA 184 + L A Sbjct: 168 AYVRLLELLA 177 >UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A526_BIFAD Length = 256 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 57/187 (30%), Gaps = 16/187 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +DLETTG VE+G + V G + + + +NG Sbjct: 82 MVDNYTSIDLETTGFSPSDDRIVEIGAIRVRNGRPVKRYS-QLINPQRPLPEEITRLNGL 140 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + L + + ++ +T G N FD+ + M Sbjct: 141 TDADLRNQ----PTVDQVLPDFIRFIGNDTLIGHNINEFDAAFLLANTTRLGMR------ 190 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 H + + L + R G+ H A DA TA C++ + Sbjct: 191 ----HIGNKTIDTLPLDRALYPEEPKHRLVDIIRRFGIAQTESHRAADDALQTAQCYETM 246 Query: 180 RHTAAAH 186 + A+ Sbjct: 247 KAYMKAN 253 >UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3L4_MAGSM Length = 237 Score = 151 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 17/188 (9%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++LIV+D ETTG D + +E+G + + V A +++G Sbjct: 2 ERLIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGD-ERQWYVNPEREIPADATKVHGIT 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + E ++ ++ N FD + + + R Sbjct: 61 DADVAN----SPKFKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRLN--------KR 108 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + + + LDA+ +RLGV R H A+ DA A + L Sbjct: 109 LVMPMERAIDTIPLARRKFPG-STVNLDALCKRLGVDNSGRTFHGALLDAHLLAEVYVEL 167 Query: 180 RHTAAAHL 187 L Sbjct: 168 MGGNQFSL 175 >UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostridium tetani RepID=Q895Z5_CLOTE Length = 380 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 16/175 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+DLETTGL T +E+ + +G+ + + + +A EIN Sbjct: 82 DEFVVIDLETTGLYPVTDKIIEITAIKYKSGQIVEK-YNTLINPKINIPKRATEINNITN 140 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E+ +++ N +FD + + Sbjct: 141 NMVKD----SPVIEDVLPELLKFIKEYPLVAHNASFDIKFLNANLALINREIKN------ 190 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L + E L + N H A+ D TA + Sbjct: 191 -----VAIDTLQLSRAMYTFLPNHKLTTIKEHLCISEDNSHRALPDCITTAEIYL 240 >UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR66_CLOPH Length = 235 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D+E+TGL + +E+ + G+ + + E+ G E Sbjct: 2 NFLAIDIESTGLSPEKDRIIEIAAIRYIDGKPKER-FEKLINPGCPLPERITELTGITED 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E + + G N + D + + + + Sbjct: 61 MLAGAM----TEREVIKEFLTFAGEDVLLGHNVSVDFSFIKTAADRLKIGYERQG----- 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + E + L+++ E G+ H A+ DA A A + L Sbjct: 112 ------IDTLYLSRTLKSDLEKKNLESMCEHYGIIRECSHRALEDAIAAATLYQKLYEE 164 >UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0N2_9BACE Length = 1390 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 19/184 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ D+ETTGLD + +E+G + + GE V + +E+ ++ Sbjct: 368 EVVCFDIETTGLDNRRDVIIEIGAVILRNGEIAE-TFDTFVSPGRPLSREIVELTSITDK 426 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A ++ A N FD +A Y +PF + Sbjct: 427 MLEGA----PSQEEAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTS----- 477 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC---FDMLR 180 + + + LD VAE L +P H A DA A+ F + Sbjct: 478 ------IDTLILAQNLLPDLGKYKLDIVAEHLRLPPFKHHRADADAGMVAYMLVPFFKML 531 Query: 181 HTAA 184 Sbjct: 532 EDLG 535 >UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exonuclease n=2 Tax=Clostridium kluyveri RepID=A5F9M6_CLOK5 Length = 441 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 51/175 (29%), Gaps = 16/175 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +VVDLETTGL+ +E+ + E + V P IN Sbjct: 129 DNFVVVDLETTGLEPTRDYIIEIAAAKYENNEIID-TYTTLVNPEVFIPPNITNINHIDN 187 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + +++ N FD + + +G Sbjct: 188 DMVKDC----PEIKEVLPGFMNFIGQLPLVAHNAPFDIKF---------LNANLALLGLY 234 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ + D + E L + E L + V + H A+ D + Sbjct: 235 LNNPIIDT--LPISRKLFSEIENHKLGTIKEYLNIDVQDSHRALPDCYVCGQIYL 287 >UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capnocytophaga RepID=C7M4L1_CAPOD Length = 442 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 55/178 (30%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG Y+ ++ + + E + ++ G + Sbjct: 2 YAILDIETTGGKYNEEGITDIAIYQFNGHEITD-QFISLINPERPIQEFVTKLTGINNKM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + G N AFD I+ + F Sbjct: 61 LRNA----PKFYEVAKRIVEITTDCIIVGHNAAFDYRILQTEFRRLGYDFVRT------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + I E L + LG+PV +RH A GDA AT F L Sbjct: 110 ----TLCTVELSERLIPNKESYSLGKLVRSLGIPVSDRHRASGDALATLKLFKYLLEK 163 >UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISI0_RHOCS Length = 699 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 61/182 (33%), Gaps = 17/182 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +V D ETTGL+ V + + + G L + A + I+G + Sbjct: 506 YVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGITD 565 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + ++ N AFD + ++ + F Sbjct: 566 AMVAEA----PRAEAVLPPFRAFVGDAVLVAHNAAFDLKFLRLKQRAAGVRFDGPV---- 617 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + LD +A RLG+ +V+RHSA+GD+ TA F L Sbjct: 618 -------LDTMILSRQIQGDHGEHSLDGLAARLGIGLVDRHSAMGDSLMTAAIFLRLMDM 670 Query: 183 AA 184 Sbjct: 671 LE 672 >UniRef50_C6WZM7 DNA polymerase III epsilon subunit n=2 Tax=Flavobacteriaceae RepID=C6WZM7_FLAB3 Length = 407 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 16/174 (9%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 V+D+E+ G + +E+ + D E + V + P ++ + + Sbjct: 4 VIDIESNGAGFRKESIIEIAVYKYDGHEIVD-QFISLVNPESEITPFVQKLTKISPKMVK 62 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 T + V + R G N FD ++ ++ F Sbjct: 63 ----TAPKFPEIARRVIEITRNTILVGHNIDFDYRMLRQEFKRLGYDF-----------T 107 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L K I E L + + LG+P+V++H A GDA AT F +L Sbjct: 108 INTLDTIPLAKKLIPEAESYSLGKLVKSLGIPLVDQHRASGDARATLDLFKLLL 161 >UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha H16 RepID=Q0JYK3_RALEH Length = 220 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 64/184 (34%), Gaps = 14/184 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++ +V D+ETTGLD + +E+G + V+ + + + V+ K E+ G Sbjct: 48 LPERFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVLVKPSRKVPKKITELTGI 107 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + E ++ + A + + N FD +++ S+ F+ Sbjct: 108 TPEMIEAEGVSLES---AVQDFAKFAGNLRLVSFNAEFDMAFISKAAGKSSITFANPVS- 163 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 A + + L +A+ + + H A+GD A + Sbjct: 164 ----------CALKMSRRAWPDRKSYRLAEIAKDGNLDTSDMHRALGDCQRAAIVYCAAA 213 Query: 181 HTAA 184 Sbjct: 214 SRLG 217 >UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU82_9GAMM Length = 528 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 16/177 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++++++DLETTG +E+GLL ++ G+ L V+ P ++ G Sbjct: 21 PEKMVLLDLETTGGKATHHRIIEIGLLVIEQGKVLER-WQSFVDPETVLPPFIQKLTGIA 79 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + +L T N FD + + + ++ Sbjct: 80 PSMLRGA----PLFSEVAETLLTYLNDRTLVAHNARFDYGFLKNEFQRIGISYNAKP--- 132 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + + + GLD + +R +P+ NRH A+ DA F Sbjct: 133 --------LCSVKFSRSLYPQFKRHGLDQIIKRFQLPIENRHRALDDAEMIQRFFLK 181 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 56/180 (31%), Gaps = 16/180 (8%) Query: 7 VVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 VVDLETTG + ++VG + V GE + + A ++ G + Sbjct: 27 VVDLETTGTSVNHGDRIIQVGCVLVQDGEII-NHFETKINPRVAVPRHITQLTGIKNNDV 85 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 G + L G F N FD + + P Sbjct: 86 RNA----PLFEDIAGTLYSLLSGTIFVAHNVNFDFPFLNAELERAGYPSLS--------- 132 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAAA 185 + + ++ + + L + L + + HSA+ DA ATA L Sbjct: 133 -IKAIDTVTLSQILMPTVKSYRLRDLTSSLSIEHDHPHSAVSDAEATAHLLVDLMKQLRE 191 >UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIM3_PETMO Length = 1388 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 57/183 (31%), Gaps = 16/183 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V DLETTGL+ +E+G + + + + H V+ G Sbjct: 379 ETEFVVFDLETTGLEPAMNEIIEIGAVKIKNMKIV-SKFHRLVKPRKPVSNFTSNFTGIT 437 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L E+ + ++ G N FD + Sbjct: 438 NQMLE----VEKPIEEVLPQFLSFIEGAVLVAHNAIFDYRFIREWVRRV--------YNE 485 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A + L + + GL V E L + H A DA TA F L Sbjct: 486 HFEQTYIDTVALSKSLLTL---KSYGLAKVVEELKLGSFEHHRAHEDANITALVFLKLIE 542 Query: 182 TAA 184 A Sbjct: 543 MAK 545 >UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M5F0_CAPGI Length = 453 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG E+ + D + + D + + G + Sbjct: 2 YAIIDIETTGGKMGEEAITEIAIYRFDGQKVTDRFIS-LINPEKKIDDFVVRLTGISNKT 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + + + N +FD +++ + + Sbjct: 61 VRQA----PKFYEVAKRIVEITEDCILVAHNASFDYRVLSLEFRRLGFDYQRS------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + + L + LG+P++NRH A GDA AT F +L Sbjct: 110 ----TLCTVEMSQRLLPDEPSYSLGKLTRSLGIPLLNRHRANGDAMATVHLFKLLLDRDT 165 Query: 185 AHL 187 + Sbjct: 166 QKI 168 >UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodobacterales RepID=A8LQ52_DINSH Length = 485 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 60/187 (32%), Gaps = 19/187 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 + ++ D ETTGL + ++ V G+ + V A I+G Sbjct: 290 KYVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGIT 349 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + G N FD R++ F Sbjct: 350 DAMVADA----PDFLTAGRAFHGFADGAVLIAHNAPFDMAFFYRKQAEIGARFDHPV--- 402 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDML 179 L + TE LDA+AERL +P RH+A+GDA AT F L Sbjct: 403 --------LDTVLLSAVIYGQTEQHSLDALAERLNVTIPEEARHTALGDALATTEVFLKL 454 Query: 180 RHTAAAH 186 A Sbjct: 455 LPMLQAK 461 >UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bacteria RepID=A1BGS1_CHLPD Length = 219 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA ++V+D ETTGL +E+G + V+ GE + + G Sbjct: 5 MADSVVVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLM-NPGFRISRFIESYTG 63 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E +++ G+ N +FD + + + Sbjct: 64 ITNEMLSGQ----PCCEEVMTEFSEFIAGHNIVAHNASFDRRFLDFELKRAKRVYEGACC 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDM 178 + + + L + G+P + H A+ DA TA + Sbjct: 120 -----------CSLLVSRRIYQDSPNHKLQTLVSHAGIPEIGSFHRALADAEMTAHLWMS 168 Query: 179 LRHT 182 + Sbjct: 169 MIDR 172 >UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WA42_ATOPD Length = 342 Score = 149 bits (378), Expect = 4e-35, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 20/183 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVDLETTGLD +E+ L V G+ + A IN Sbjct: 75 PESYVVVDLETTGLDVHYCEIIEIAALKVVDGKITE-EFSSLIHPPREIPSGATAINHIT 133 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 + + +++G G N +D+ ++ Sbjct: 134 NHMVKNA----PTLDKVIPQFDTFVKGFPLIGHNSLRYDAIVLEENFFR----------- 178 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDML 179 R + Y + + L +A+RL V H A+ D T ++ + Sbjct: 179 RDFLCDYVWYDTYKLARQIL--EPPYKLINIAKRLNVKQHGKAHRALADCYMTYGIYEKM 236 Query: 180 RHT 182 R Sbjct: 237 REI 239 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 16/178 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +V DLETTG+ +E+ L V E + V A ++NG + Sbjct: 56 DNYVVFDLETTGISAVKDDIIEISALKVKNHEQVE-TFSRLVNPRRPIPAGATKVNGITD 114 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 + +E E D++ G G N +FD + R Sbjct: 115 EMVQ----SEPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAADEVCRKAVLNDF-- 168 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + L +A+ + H A D C++ + Sbjct: 169 --------IDTLFMARALLPGLSRHRLTDLADYFKISSEGAHRAFNDCVMNQICYEHM 218 >UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A497_GEMAT Length = 214 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 61/184 (33%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVD+ETTG E+ ++ V G+ + V V P + Sbjct: 5 PFAVVDVETTGTRAAGGDRITEIAIVQVQGGQ-VGEVYSQLVNPERPIPPYITSLTHITW 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + V D LRG+ F N FD V+ + + + Sbjct: 64 DMVRDQ----PTFREITSNVLDRLRGSIFVAHNAPFDWRFVSEEVRR-------GSGQEL 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R L + + LD V G+ + RH A GDA ATA + + Sbjct: 113 SGPR---LCTVRFARAALPQLSRRSLDHVTRYFGIEIAARHRAAGDALATAHALCRMLNI 169 Query: 183 AAAH 186 A+ H Sbjct: 170 ASEH 173 >UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2 Length = 233 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 16/179 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + +D+ETTGL+ +EVG+ V+ G+ V + + E+ G Sbjct: 1 MINRYVALDIETTGLNPAVDRIIEVGMARVEDGQIT-QKYSTLVYPGISVSERITELTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + GE+ +++ G N FD + + + V + + Sbjct: 60 HNEELTGK----PRIEDIIGEITEFIGDWPVLGHNVIFDFSFLKKAAVNNGLTIND---- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + E + L + + + H A DA + + + L Sbjct: 112 -------DGIDTLKLARRILPEVEHKSLSFLCQYFNIDPGRSHRAYDDAVSASLLYAKL 163 >UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=2 Tax=Thermus thermophilus RepID=Q5SK39_THET8 Length = 624 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 61/180 (33%), Gaps = 21/180 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYER 63 DLETTGLD + V + ++V L V P A ++G Sbjct: 440 YTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNPGRPISPAATAVHGLTAE 499 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + +++ N AFD + R + PL Sbjct: 500 MLRDK----PPLEAVLPAFRAFVQDTVLVAHNGAFDLAFLRRA----GLDQPPLLDTL-- 549 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +L + L+A+A R GVP RH+A+GDA TA F ++ Sbjct: 550 ----------LLAQLLFPDLKDYRLEALAHRFGVPATGRHTALGDALMTAEVFVRMQPLL 599 >UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO Length = 968 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 53/183 (28%), Gaps = 16/183 (8%) Query: 3 KQLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VVDLE TG + + + ++ + + + + + L + Sbjct: 38 QTYAVVDLEMTGTNPNGSERLIQFSCVFTEGNKIV-NTFSTLINPLRKIPEDVQNLTNIT 96 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + G + L F N D + + P L Sbjct: 97 DKDVKSA----PTFDEVAGTIYALLSDTVFVAHNIELDYRFLNSEFERIGFPKLDLEG-- 150 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + ++ L +A LG + H A DA TA F +L+ Sbjct: 151 --------IDTVQLAQIAFPTLASYRLGDLAHFLGFKHKHPHHADSDAFVTAELFILLQK 202 Query: 182 TAA 184 A Sbjct: 203 KLA 205 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 60/188 (31%), Gaps = 18/188 (9%) Query: 1 MAKQ--LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M K VVD+ETTG D +++G + V + + V L + Sbjct: 1 MDKDTVYAVVDIETTGTSVTDGDRIIQIGCVFVQHNQVI-NHFETDVNPLKEIPAAISRL 59 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + + G + L F N FD + + P P Sbjct: 60 TGITNKRVRHA----PLFDDVAGTLYSLLTNTVFVAHNVNFDLPFINAELERVGYPALP- 114 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 +A + + ++ + L ++ + N HSA DA+ATA F Sbjct: 115 ---------IAAVDTVSLSQILLPTATSFRLRDLSRLFNIEHDNPHSADSDASATAELFI 165 Query: 178 MLRHTAAA 185 L A Sbjct: 166 FLFRRLRA 173 >UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bacteroidetes RepID=A6EU25_9BACT Length = 472 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ V+D+ETTG E+ ++ V+ E + + + G Sbjct: 5 TEKFTVIDVETTG-GVGQGRMTEICIITVENMEIVDV-WSSLINPEIYIPQHITALTGIT 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + + +++ R F N FD + ++ FS Sbjct: 63 DQMVTDA----PRFCDVAAIIEEKTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKK--- 115 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + I L + +G+ +++ H A D AT F L Sbjct: 116 --------LCTVRLSRKLIPGLPSYSLSKLCRSIGISLLDAHRAEADTRATTTLFLQLLE 167 Query: 182 T 182 Sbjct: 168 K 168 >UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Burkholderia RepID=A9AEP6_BURM1 Length = 398 Score = 149 bits (376), Expect = 5e-35, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 57/178 (32%), Gaps = 17/178 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + L+ VDLETTG E+G++ + G V P ++ G Sbjct: 35 EQPLVFVDLETTGGTPAEHRITEIGVVEI--GPLGVSTWTTLVNPGQPIPPFIQQLTGIS 92 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + + L G F N +FD + + F+P Sbjct: 93 DAMVRDA----PSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 143 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L + GLDA+ R G+ RH A+ DA + L Sbjct: 144 ------DVLCTVRLSRALFPRESRHGLDALIARHGLVPAARHRALADADLLWQFWRHL 195 >UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGT7_BDEBA Length = 217 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I DLETTG VE+G + G+ + ++ L P A +NG + Sbjct: 14 RFIAFDLETTGTVPGVDQIVEIGAVRFIDGQP-EAIFATLIDPLRPIPPGASAVNGISDD 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ + N FDS + + Sbjct: 73 MVKGK----PLIDTILPAFAEFCGEDVLVAHNAPFDSQFLIADIKKH----------ETT 118 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R L + + L + + L +P N H A DA F + Sbjct: 119 APRGVILDSLPIARKVFPGLPNYKLGTLVQHLKIPTSNFHRAEEDATYLGHMFSQMMKR 177 >UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XIW2_9CAUL Length = 247 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 18/190 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG D +EVG + + H V A+ ++G Sbjct: 1 MARE-IVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPADAIRVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + A ++ D++ N FD + + P T Sbjct: 60 ITDDKVKDA----PKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPLLHET- 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + + LDA+ +R + +V+R H A+ DA A + Sbjct: 115 --------RWIDTLQLAQKRFPGMAN-SLDALCKRYKISLVDRTLHGALIDARLLAEVYL 165 Query: 178 MLRHTAAAHL 187 L+ L Sbjct: 166 ELKGGKERVL 175 >UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bacteria RepID=Q0HVL5_SHESR Length = 239 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 53/186 (28%), Gaps = 18/186 (9%) Query: 2 AKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A L+V+D ET+GL + A +E+G + ++ G+ + + + G Sbjct: 37 ANTLVVLDFETSGLSPNQGARAIEIGAVLIEQGQITAR-FSELMNPGFRINSFIEDYTGI 95 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L A ++ + N AFD + + + Sbjct: 96 SNQMLAHA----APCAEVMARFAAFIGKHHLVAHNAAFDQRFLDAEFAQIGHQYPGQFG- 150 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDML 179 + + L + +P H A+ DA T + + Sbjct: 151 ----------CSLLLARRLYPEAINHQLATLVRHKQLPTDGTFHRALADAEMTGHLWLRM 200 Query: 180 RHTAAA 185 Sbjct: 201 LADLKQ 206 >UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caulobacteraceae RepID=B4W5N5_9CAUL Length = 241 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 18/190 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG D +EVG + + H V P A+ ++G Sbjct: 1 MARE-IVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPERLIPPDAIRVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + ++ +++ N FD + + P + T Sbjct: 60 ITDDKVKDA----PKFHEIADDLIEFIGDAPMIAHNAGFDRNFIDFEYKLCGRPITGET- 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + + LDA+ +R V +V R H A+ DA A + Sbjct: 115 --------RWIDTLKLAQARFPGMPN-SLDALCKRFKVSLVERTLHGALIDARLLAEVYL 165 Query: 178 MLRHTAAAHL 187 LR L Sbjct: 166 ELRGGKERVL 175 >UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphingobacteriales RepID=C7PV18_CHIPD Length = 456 Score = 148 bits (375), Expect = 7e-35, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 52/178 (29%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VD+ETTG E+ + + G ++ + + G + Sbjct: 2 YAIVDIETTGGHASANGITEI-AIYIYDGRNIVQQYETLINPGVPIPRYIQSLTGITDEM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + G++ L F N FD + + Sbjct: 61 VANA----PAFDEVAGDIFALLHDKIFVAHNVNFDYSFIQYHLAQAGYQLRTKK------ 110 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L G+ I L + + L + V RH A GDAAAT F +L Sbjct: 111 -----LCTVRLGRKIIPGLPSYSLGNLCKSLEISVTQRHRAAGDAAATVKLFGLLLQQ 163 >UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Treponema RepID=Q73L66_TREDE Length = 217 Score = 148 bits (374), Expect = 8e-35, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 15/173 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 D ETTG + VE+G + D + ++ ++ P+A ++N + Sbjct: 16 FTAFDTETTGTEAKAERVVEIGCVKFDIRGVIAR-YNVLIDPEKPMPPEAGKVNQITDEM 74 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + A + D++R N +FD + + V Sbjct: 75 LAGQ----PKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCGKTKLTNKVF---- 126 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + + L +A + GV VN H A DA F Sbjct: 127 ------DTLTFARETLPGLQSYALQNLATQFGVQAVNAHRAEDDARVCMEFFK 173 >UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRP3_9BACT Length = 193 Score = 148 bits (374), Expect = 9e-35, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D+ETTGL VE+G + G V +A+ I+G + Sbjct: 10 FVAIDVETTGLSNRWDRIVEIGAIRFTPGSETE-SFQTFVSPGRPIPSEAVAIHGITDEM 68 Query: 65 LYRE-ALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + L+E A NP+FD + ++ Sbjct: 69 VEGAPGLSEASI--ALASFLK--DEEPMVFHNPSFDLGFLDANMRAIKGSWN-------- 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + L A+A G+ H A+ D +A F+++ Sbjct: 117 --VMPVFDTCGLARKAFPGIKGYSLVALARHFGLSGGGHHRALEDCRYSASLFNLILE 172 >UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphingobacterium spiritivorum RepID=C2FTR2_9SPHI Length = 469 Score = 148 bits (374), Expect = 9e-35, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VD+ETTG + E+ + D + + + + G Sbjct: 13 YAIVDIETTGGYAANSGITEIAIYLHDGHQVID-SYQTLINPHKEIPYHIQMLTGITPEM 71 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L ++ +L F N FD + + + Sbjct: 72 LTDA----PSFEDVAADIYSFLENKVFVAHNVNFDYSFIYAHLKACGYQWKSPK------ 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + L + +RL +P+ +RH A GDA AT F+ + Sbjct: 122 -----LCTVRLARNIFKGFSSYSLGNLCQRLDIPISDRHRAAGDAKATVILFERIL 172 >UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTI9_9FIRM Length = 828 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 17/182 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ VVDLETTG D +++G + ++ G+ L + I G Sbjct: 7 RIAVVDLETTGSHLDQGDQIIQIGAVLIEDGQVLAQHSM-LLNPERNIPTHITAITGIQS 65 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + G + L+ F N FD T + + + F P Sbjct: 66 DQVQDA----PTFSQVAGLWYERLKDCFFVAHNLGFDLTFLQAKFAEQGLDFQPPA---- 117 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L K+ + L +++ G+ + H A+GDA TA D+L H Sbjct: 118 -------LDTVQLAKIFLPQAPGFNLQDLSQFFGLNFQDAHDALGDARMTAHLLDVLAHQ 170 Query: 183 AA 184 AA Sbjct: 171 AA 172 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 60/176 (34%), Gaps = 15/176 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D+ETTGL+ + +++ + GE + V+ + + Sbjct: 23 EFVAIDIETTGLNSEWDEIIQIAGMRFK-GEEVVNQFVSLVKPKGKVPKFIEHLTHISPQ 81 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L T + +++ + G N FD + + V + Sbjct: 82 ELK----TAPPIKEVLKDFCNFIGDSILVGHNIGFDFNFLNQFIVDNG-------GFPIS 130 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + G++ + T L + G+ ++N H A DA AT F+ L Sbjct: 131 NMHWDT---AEIGRIYLPFTTDHKLSTLVSFFGIELMNAHQADADALATGKLFNAL 183 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 59/175 (33%), Gaps = 16/175 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M K+ +VVDLETTG +E+G+ ++ G+ + V P ++ G Sbjct: 1 MEKKFVVVDLETTGHSIKSGDEMIEIGVAVIEDGQITERLS-AFVRPQKPIPPFISQLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + A V L G F N FD T + V Sbjct: 60 ITDEDVAQA----ESFATIAPRVLQLLDGGVFVAHNVQFDLTFLNEALEEEGYLPYTGPV 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + ++ + E L + E L + H A DA ATA Sbjct: 116 ----------IDTVELARILLPTAESHSLSHLTEALQLTHHEAHRAGSDAEATAE 160 >UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIT4_RHOM4 Length = 616 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 17/172 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 V D ETTGL + + +G + + G V ++ ++G Sbjct: 422 YTVFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPRRPISLDSVRVHGIQP 481 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + R G N AFD + ++ + F Sbjct: 482 VLLQDK----PPIEEVLPRFYRFARDTVLVGHNVAFDLKFIRQKEKALGLRFDQPV---- 533 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 L + + GLD +A G+ V RHSA+GDA TA Sbjct: 534 -------LDTMLLAAVVDPERQHYGLDELAAAFGIEPVGRHSALGDALITAE 578 >UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK59_9BACT Length = 228 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 70/174 (40%), Gaps = 14/174 (8%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 V+D ETTGLD + A + V + V + + F + + ++++ + + + Sbjct: 47 VIDTETTGLDLNDARIINVAAVKVQNFKIIDF-YNSFINPETEIPKESIQWHNITDEMVA 105 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + + +++ + G + FD ++ ++ + ++ ++ Sbjct: 106 DK----PTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMM-------DSFSCQINNNW 154 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + Y+ + D LD + + V RH+A+GDA ATA F + Sbjct: 155 LDTMLIYSHAIIKKDE--RYSLDYLLDLYNVTCNGRHTALGDALATAEVFTKMI 206 >UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HRT4_9SPHI Length = 456 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 57/179 (31%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VD+ETTG T E+ + + GE + + + G Sbjct: 2 EFAIVDIETTGGAASTCGITEI-AILIHDGEKVIEEFESLINPEQDIPTYITGLTGIDNS 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ D L G F + FD V F Sbjct: 61 MVSDA----PTFEELSDKLWDLLHGRVFVAHSVNFDYGFVRACFNAIGREF--------- 107 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ L + I L + E +P++ RH A+GDA ATA FD + Sbjct: 108 --KVDKLCTVRLARKIIPGLSSYSLGRICETQKIPILARHRAMGDARATAILFDQMLKK 164 >UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gammaproteobacteria RepID=Q21J48_SACD2 Length = 238 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 14/177 (7%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTGL+ +E+G + + + H ++ D A+E++G Sbjct: 4 IVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPEREIDEGAIEVHGITNEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E ++ G N FD + + + Sbjct: 64 LADK----PVFKDIADEFMAFVDGAELVIHNAPFDVGFLNHEFNLLG----RGSTVINDR 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + D A + + LDA+ +R G R H A+ DA A + ++ Sbjct: 116 CSILDT--LALARNKHPGQKN-NLDALCKRYGADNSARDLHGALLDAEILADVYLLM 169 >UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Betaproteobacteria RepID=Q21VB4_RHOFD Length = 476 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 59/186 (31%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +++DLETTG + E+ + ++ G+ + V + P + G Sbjct: 1 MLPCYVLLDLETTGGNPVHDRITEIAAVRIENGQEVAR-WSTLVNPGCSISPFIQHLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + L G N FD + + + Sbjct: 60 SNAMVRGA----PGFETVAQHLLALLDGAVLVAHNVRFDHGFLLNELARLDVAL------ 109 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+ L +L + GLDA+ +R G+ + RH A+GD + R Sbjct: 110 -----RVKTLCTVRLSRLLYPQHKGHGLDAIMQRHGIRTLERHRAMGDVEVMQAWLQIAR 164 Query: 181 HTAAAH 186 A Sbjct: 165 QEHGAE 170 >UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lovleyi SZ RepID=B3E5V5_GEOLS Length = 168 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 60/185 (32%), Gaps = 21/185 (11%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++IVVD ETTGL + +E+G + V+ G+ + A ++G Sbjct: 1 MN-RVIVVDTETTGLSVRNQGRVIEIGAVAVENGQIT-AELATLINSGTPISYGAYRVHG 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E+ L W ++ + N AFD + + M + Sbjct: 59 ISEQMLAG----RPTPQEVWPWFLEFAGNSPLVAHNAAFDRAFINHELHLLGMSLANPWH 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVV-NRHSAIGDAAATAFCF 176 + + L+ V + L +P RH A+ DA A + Sbjct: 115 -----------CTVRLSRRKLPRLMNHKLETVYKHLFGELPEEVQRHRALDDARMAARVW 163 Query: 177 DMLRH 181 L Sbjct: 164 VELLK 168 >UniRef50_B3R0A4 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0A4_PHYMT Length = 1522 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 14/183 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V D+ETTG +E+ + + + V + Sbjct: 413 NMEYVVFDIETTGFSKVRDKIIEISGFKIKNN-IVIDQFYSLVNPEIDLPENIYLLTKIK 471 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + +++ N +FD + + + ++ F L Sbjct: 472 NETLKNA----PKILQVLPDFLKFIKNTCLVAHNASFDVSFIFEKSKQLNISFPLL---- 523 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A + + + L +A + V + H A DA AT F + + Sbjct: 524 ----PVIDTLALSQYYFSSF-MKFFSLKRLAAKFKVKLEEHHRAKDDAKATTEIFMKILN 578 Query: 182 TAA 184 Sbjct: 579 LLE 581 >UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-related DNA helicase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHT3_ANOFW Length = 880 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 16/175 (9%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + +VVD+ETTG +++G + ++ + + V+ ++ G Sbjct: 1 MNDRFVVVDIETTGNAPKKEDRIIQIGFVVIEGDK-VKKRFSTFVQPERDIPLFIQQLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 ++ + + G F N FD + + + + + Sbjct: 60 IDHAMVHDA----PPFQHIAAMLVEQWEGAYFVAHNVQFDWAFLQEEFIRSGIQPPTCRL 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 L + + L+ +AE L H A DA ATA Sbjct: 116 ----------LDTVELARFLMPTQSSYKLNHLAEALSFAHDRPHQADYDAEATAQ 160 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 56/187 (29%), Gaps = 22/187 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +DLET+GLD +E+GL+ + G+ + + K + G + Sbjct: 3 NFVALDLETSGLDCLQDEIIEIGLVKMVDGKEID-SFSTLIRPKGILPVKIKRLTGIKDH 61 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + ++ G N FD ++ + Sbjct: 62 ELQDA----PKLQEVLPVILQFIADLPLVGHNVKFDYDFLSTAVQ-----------SPLA 106 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR--- 180 + K + L + LG+ + N+H A+ DA A L Sbjct: 107 NPLYDT---LELSKYLMPGASNHRLGYLCSYLGIDIPNQHRALDDARGAAMLLIHLLNQC 163 Query: 181 HTAAAHL 187 L Sbjct: 164 EEMEPEL 170 >UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=Q16B76_ROSDO Length = 465 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 60/186 (32%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +V D ETTGLD T V++G + V G+ + V P + ++ + Sbjct: 272 TFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPPGSTAVHQISD 331 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + VA + N FD + RQ F Sbjct: 332 AMVADA----PGFDVACRAFHQFAEHAVIVAHNAPFDMAFLRRQCRDQDYAFDNP----- 382 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLR 180 L + + LDA+ +RL +P RH+ +GDA ATA L Sbjct: 383 ------ILDTVHLSAVVFGGSAEHTLDALCDRLNVHIPDDVRHTGLGDALATAKALVALI 436 Query: 181 HTAAAH 186 A Sbjct: 437 PVLEAR 442 >UniRef50_A4C086 DNA polymerase III subunit n=2 Tax=Polaribacter RepID=A4C086_9FLAO Length = 361 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG ++ E+ + D + V + + G + Sbjct: 2 YAILDIETTGGKFNEEGITEIAIYKFDGHSVVD-QFISLVNPEKEIQQFVVRLTGINNKM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + + T N FD I++ + F+ Sbjct: 61 LRSA----PKFYEIAKRIIEITKDCTLVAHNTTFDYRILSTEFDRLGYDFNRN------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L K I L + + LG+P+ +RH A GDA AT F +L Sbjct: 110 ----TLCTVELSKQLILDQPSYSLGKLTKALGIPMTDRHRASGDALATVQLFKLLLEK 163 >UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=C0DA77_9CLOT Length = 255 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 52/184 (28%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +D+ETTGL+ E+ L V G + V + +E+ G Sbjct: 13 TNSYVAIDIETTGLEPRLDKITEIAALRVVDGA-VEGRFVTLVNPGRPLGERIVELTGIT 71 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L G + + G N FD + + R V + F Sbjct: 72 DGMLAGA----PAIGDVIGPLVRFCGDLPLLGHNILFDYSFLKRAAVNQGLDFQREG--- 124 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + L A + V H A DA + + L Sbjct: 125 --------IDTLNLCRAFMPGEHKKNLSAACAFYCIEQVEAHRAEADALSAHLLYQKLLE 176 Query: 182 TAAA 185 Sbjct: 177 GRGE 180 >UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gammaproteobacteria RepID=Q1QW65_CHRSD Length = 253 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 63/177 (35%), Gaps = 9/177 (5%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG+D D +E+G + V H + DP+A+E++G Sbjct: 4 IVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGITNER 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + E A +++RG N AFD + + Sbjct: 64 VADE----PVFADIADAFWEYIRGAELVIHNAAFDVGFIDHEFGLL-HDKRGGPRLGPVA 118 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + L A + LDA+ +R G+ R H A+ DA + + + Sbjct: 119 DYCSVLDTLAMARKLHPGQRN-NLDALCKRYGIDNGRRVLHGALLDAEILSDVYLTM 174 >UniRef50_Q11G58 DNA polymerase III, epsilon subunit n=1 Tax=Chelativorans sp. BNC1 RepID=Q11G58_MESSB Length = 498 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 62/181 (34%), Gaps = 15/181 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYERG 64 + D ETTGLD TA V+V + + G V + P ++ I+G + Sbjct: 16 VAFDTETTGLDTRTARVVQVAGVAISRGAVRQDESFESLVHPGMSIPPDSIRIHGITDGM 75 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L A W + + G FD I+ R+ + Sbjct: 76 LREA----PAFAAVWRSFEMFRGVRPLIGYAVGFDLAIIEREAARAGIR----------R 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 R L ++ L+A+A LG ++ RH A+ DA A A F L Sbjct: 122 KRPRTLCVRTLSRIVNRDLRGHSLEALAAWLGFEIIGRHQALDDAMAAAKVFTGLLPRLQ 181 Query: 185 A 185 A Sbjct: 182 A 182 >UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C3RL58_9MOLU Length = 1440 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 51/181 (28%), Gaps = 17/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + DLETTGL E G + + GE + + V + + + Sbjct: 402 TYVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDR-LQMFVNPGKSISSRITNLTSITND 460 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E + ++ N FD + +MP + Sbjct: 461 MVRNE----PTIDALLPRIIEFFDDCILVAHNANFDIGFLNENLRRNNMPEITNPI---- 512 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVVNRHSAIGDAAATAFCFDMLRH 181 + + A + + P + L V H A DA F+M+ H Sbjct: 513 ------IDSLALARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMMLH 566 Query: 182 T 182 Sbjct: 567 Q 567 >UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V2X6_9AQUI Length = 206 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 14/183 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++DLETTGL +EV + +G + + H+T + K + + G Sbjct: 9 EATFVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQLHHLTKPRENFIPSKVINLTGIT 68 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + EV ++L+ + N FD + ++ + Sbjct: 69 NAMV----IDKPYFEDIYPEVYNFLKDSIVVAHNAKFDISFLSEVHK----------IVF 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + RL + + + + L ++ LG+ +H A+ DA AT F + Sbjct: 115 KNNLRLHYICTDNLARRIFPEIQKKSLSSLTNYLGINFKQKHRALSDAQATLQAFQTMLE 174 Query: 182 TAA 184 Sbjct: 175 YLQ 177 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 52/177 (29%), Gaps = 16/177 (9%) Query: 8 VDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 +DLETTG + +++ ++ + E + A ++ + Sbjct: 1 MDLETTGHSPANGDRMIQIAIVIMKDWEI-ERTYTKFINPGKAIPSFIQDLTHITNEDVK 59 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + + L F N FD + + + +P + Sbjct: 60 D----SYPFEEHADYIYELLADCVFVAHNADFDLSFLQAEFKRAGLP----------KWQ 105 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + K+ + L +A L + + N H A DA ATA F Sbjct: 106 GKKMDTVELAKILFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKCCWKEL 162 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 14/178 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +DLETTGLD++ +EV L+ + GE + + P + G + Sbjct: 7 FVALDLETTGLDFEKDEIIEVALVRFENGEPKENLDFLVKPSAVELRPFIETLTGISKAD 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A G++ ++ N FDS + + + + Sbjct: 67 LESAS----DFATIAGQICSFVGDLPIVAHNAVFDSKFLKQTFTKVGISYDSHVFW---- 118 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + ++ LD + + L + H A+ DA A F Sbjct: 119 ------DSLTLSRIAFQDVPNHRLDTLVQELNIERSRAHRALPDADACGRLFVKALEK 170 >UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum RepID=DPO3E_TREPA Length = 215 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 13/180 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 D ETTGL + +E+G + D + + A P +IN + Sbjct: 15 FTAFDTETTGLKAEEDRIIEIGAVTFDRKGIIAR-FSTLIFPDRAIPPDVSKINHITDDM 73 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + +++G N FD + + Sbjct: 74 LVNK----PRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAELSLCKKQPLS-------- 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 H++ D A A L +A + G+ V H A DA F + A Sbjct: 122 HKVVDTYAMAQAVFPGLGRHQYRLQNLALQFGLTVHAAHRAEDDARVCMELFTTMIAHHA 181 >UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helicase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC75 Length = 958 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 51/179 (28%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + V+D ETTG + ++VGL ++ S+ V V P + G + Sbjct: 2 KFAVLDFETTG-NQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLTGISDS 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E+ L G N AFD + + Sbjct: 61 DVADA----PSLEEMMMELVPMLDDVVLVGHNVAFDFNFLQNALDRCGYLPFSGRI---- 112 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L K+ L V+ G+ H A DA ATA+ Sbjct: 113 ------LDTMHFLKICFPSLPSYQLGMVSSHFGLEHDRPHQADSDALATAYALLKCLEE 165 >UniRef50_Q3AAH9 Putative DNA polymerase III, epsilon subunit n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AAH9_CARHZ Length = 222 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 55/182 (30%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V+DLETTGL + +G + + G H V + G Sbjct: 37 TYTVIDLETTGLKPFQGDEIIAIGAVKIINGNITRPAFHAYVNPQREIPEVVQRLTGISP 96 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + D+ R + G + FD + + + G+ Sbjct: 97 KTVQNA----PPLTNTLTTLLDFARNSVIVGHSVNFDLAFLNKHLSSL--------TGKK 144 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 RL D L+ A++ + + RH+A+GDA A F Sbjct: 145 LTPRLLDTVDLGIY--LFPREPNYSLENFAQKFAISLQGRHTALGDAVICAKVFLNFLKI 202 Query: 183 AA 184 Sbjct: 203 LE 204 >UniRef50_C6CYA2 DNA polymerase III, epsilon subunit n=2 Tax=Bacillales RepID=C6CYA2_PAESJ Length = 244 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 17/187 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 ++V DLETTG + + G +++ E + V + +E+ G Sbjct: 59 DIVVFDLETTGFYPSNGDEIISFGAVHMKGLELDESRQFYSLVNPKRRIPRQIIELTGIT 118 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++ D + T Sbjct: 119 NEMVQDA----PDLMQVLHDFMEFIGRRLLIAHAAGHDKQFLNAALWR--------TSKV 166 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LR 180 +HR+ D K LD + E G+P+ RH A+ D+ TA + L Sbjct: 167 SLNHRVLDTMLV--AKWLEPKRASYALDDLLEDCGIPITERHHALQDSLMTAKLWQQFLV 224 Query: 181 HTAAAHL 187 ++ Sbjct: 225 RILDRNI 231 >UniRef50_C5B532 DNA polymerase III epsilon subunit n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B532_METEA Length = 248 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 16/181 (8%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++++V D ETTG D +EVG + + G H V A I+G Sbjct: 4 SQRIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFRTGRHFHSYVNPERPVPADATAIHGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L A ++ +++ + N FD + S+P Sbjct: 64 TDEMLKDA----PVFAAVAADIVEFIADSPAIFHNAPFDLGFFDLEFGLLSLP------- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 R + + + GLDA+ R G+ R H A+ D+ A + Sbjct: 113 --SLDRSRVTDSLVHARKLLPAGAKAGLDALCNRYGIDRTRRTKHGALMDSELLADVWLA 170 Query: 179 L 179 + Sbjct: 171 M 171 >UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB Length = 484 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 18/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 V D ETTGL V++G + V G + V+ + ++G Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVSTA 336 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A A E + N FD + R + + Sbjct: 337 MVQGA----PDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLAWDHP------ 386 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 L + + LDA+ ERL + + H+A+GDA ATA + Sbjct: 387 -----ILDTVLLSAVLFGASVPHTLDALCERLDITIPPALRHTALGDAQATACALVQMIP 441 Query: 182 TAAAH 186 A Sbjct: 442 MLQAR 446 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 51/182 (28%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + V+DLETTG + ++VGL +D + V ++ G Sbjct: 2 KFAVLDLETTGHSV-SDDILQVGLAVLDDNLEIVETYSSFVRPTIEIPAFITQLTGIDAD 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ +L N FD+ + + Sbjct: 61 MVADA----PELDEVLMQLIPYLEDAVLVAHNVNFDAGFLNQALDRCGYHPFIG------ 110 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L ++ L AV E G+ H A DA ATA F Sbjct: 111 ----RRLDTIELLRILYPSITTYQLGAVTELFGIAHDQHHRADSDAIATAELFAQSVQKL 166 Query: 184 AA 185 Sbjct: 167 RQ 168 >UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X67_LACSS Length = 944 Score = 146 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 56/188 (29%), Gaps = 18/188 (9%) Query: 1 MAKQ--LIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M ++ VVDLETTG + D ++ G V G+ + V L K + Sbjct: 1 MNRETIYAVVDLETTGTNIKDGDRIIQFGCALVQNGKII-QTISQDVNPLRDVPTKIQHL 59 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 L + + L G F N FD + + + L Sbjct: 60 THITADQLE----LAPIFEDLAPTLVEILSGTVFVAHNINFDLPFLNGELTRVGLQPLDL 115 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + ++ + L + + L + N H A DA TA F Sbjct: 116 AG----------IDTVELAQIILPEAPSYRLQDLTQLLEIEHDNPHQADSDALVTAKLFL 165 Query: 178 MLRHTAAA 185 L A Sbjct: 166 KLSARLQA 173 >UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria RepID=DPO3_STRPF Length = 1465 Score = 146 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 15/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V D+ETTGL +++ + G + ++ E+ G Sbjct: 424 EATYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVE-QFDEFIDPGHPLSAFTTELTGIT 482 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L QD+ + + N +FD + + +P V Sbjct: 483 DKHLQGAK----PLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQPV-- 536 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + GL + +R V + + H A DA AT + Sbjct: 537 --------IDTLEFARNLYPEYKRHGLGPLTKRFQVSLDHHHMANYDAEATGRLLFIFLK 588 Query: 182 TAAAH 186 A Sbjct: 589 DAREK 593 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 146 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 16/180 (8%) Query: 4 QLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVD+ETTG D ++ V G+ + + + +++ G Sbjct: 6 TYAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIVETYVSD-INPQREVPERIIQLTGITP 64 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + ++ L G F N FD + + P + Sbjct: 65 ERLKKA----PTFDQVSSKLYKLLSGTVFVAHNVNFDFPFLNGEFQRVGYPELDIEA--- 117 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + ++ + L ++ + + H+A DA ATA +L Sbjct: 118 -------IDTVTLSQILLPTLSSYRLQDLSTYFNIIHNHPHTADSDALATAKLLLILLRQ 170 >UniRef50_A0M2M5 Exonuclease family protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M2M5_GRAFK Length = 223 Score = 146 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 8/183 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + IV D ETTG +YD + +G + ++ + +P+ ++I+G Sbjct: 38 RFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFLEQKKFNPETVKIHGI--- 94 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E + A + +++ + + FD ++ + +P V Sbjct: 95 -IQNEKFEKLSELEALKKFLSYIQNSVLVAHHAGFDMKMINKALSRNGLPKLKNKVLDTS 153 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 ID ++ LD +AE + +++RH+A GDA TA F L Sbjct: 154 ILYKKT----RIATNFIDRDKIYSLDEIAEAYNIDLIDRHTASGDAYITALIFMKLLSRL 209 Query: 184 AAH 186 + Sbjct: 210 KKN 212 >UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXK4_MYCAP Length = 1459 Score = 146 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 15/181 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + D+ETTGL +E G ++++ + V ++ A E+ G ++ Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQAKIGAFTTELTGITQQM 484 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E L+ + D L G N FD + Q ++PF +TV Sbjct: 485 LDSEGLS---IKDGLQRIYDCLDGKVAIAHNAKFDFNFLKEQFRLNNVPFPNVTV----- 536 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDMLRHT 182 + A ++ + L+ V RLGV H DA A + + Sbjct: 537 -----IDTLIASRIGFPNYKRHKLEDVTSRLGVVYDPNVAHRGDYDAKVLANVWVNIISE 591 Query: 183 A 183 Sbjct: 592 L 592 >UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alphaproteobacteria RepID=Q0C6A4_HYPNA Length = 232 Score = 145 bits (367), Expect = 6e-34, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 58/192 (30%), Gaps = 17/192 (8%) Query: 1 MAKQL--IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M +++ I D ETTGL+ + +E+G + + + A + I Sbjct: 1 MTERVREIAFDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINPGMAVSEATIRI 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + L + E ++ N +FD + + P Sbjct: 61 TGITDDHLRDKPPFEHP--DIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPE 118 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFC 175 + + LDA+ +R + + +R H A+ D+ A Sbjct: 119 D---------RWVDTVQMARKRYPGAP-ASLDALCKRFDISLESRTFHGALLDSQLLASV 168 Query: 176 FDMLRHTAAAHL 187 + L A Sbjct: 169 YLELLGGRARAF 180 >UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTS6_BACTU Length = 286 Score = 145 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 52/184 (28%), Gaps = 18/184 (9%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V+D+ETT E+G + G+ + + ++ G Sbjct: 17 NNFVVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDKYS-QLINPEMKIPANITKLTGIT 75 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDS-TIVARQRVTYSMPFSPLTVG 120 + + Q ++ G N FD + + Sbjct: 76 NDMVQGK----PVYGQVLPVFQQFIDGFLVVAHNAKFDWNRFLLFYFEKVGI-------- 123 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 H + L + A + LD G NRH A DA AT +C L+ Sbjct: 124 ---HPKNEVLDSVAVFQHFCPNKGKYKLDDFCTTFGYLNKNRHRAYEDAEATGYCLLELK 180 Query: 181 HTAA 184 A Sbjct: 181 RRFA 184 >UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6 Tax=Rhodobacteraceae RepID=DPO3E_RHOCA Length = 704 Score = 145 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 59/187 (31%), Gaps = 19/187 (10%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 +V D ETTGL V++ + + G + V + ++G Sbjct: 509 TFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGIT 568 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E + T A + G N FD + R+ + F Sbjct: 569 EAMVA----TAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIGKNFDNPV--- 621 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDML 179 L + E LDA+ RLG +P RH+A+GD ATA F L Sbjct: 622 --------LDTVLLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRL 673 Query: 180 RHTAAAH 186 A Sbjct: 674 LPALKAR 680 >UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, putative n=28 Tax=Streptococcus RepID=Q04L99_STRP2 Length = 816 Score = 145 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 17/183 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VVDLE T A ++VG++ ++ GE + V D E+ G + Sbjct: 6 NRYVVVDLEATSTGSK-AKIIQVGIVVIEDGEIVD-HYTTDVNPHEPLDAHIKELTGLTD 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + + ++ D + F N FD+ ++A Sbjct: 64 QRLAQA----PDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYEL-------- 111 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R + ++ E L + LG+P+ + H+A+ DA ATA LR Sbjct: 112 ---RNPRVDTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREK 168 Query: 183 AAA 185 A Sbjct: 169 MAQ 171 >UniRef50_B9XHY8 DNA-directed DNA polymerase n=1 Tax=bacterium Ellin514 RepID=B9XHY8_9BACT Length = 199 Score = 145 bits (366), Expect = 7e-34, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 19/191 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEING 59 M + ++ DLETTGL +++ + + G V + G Sbjct: 1 MHQDYVIFDLETTGLSSYQDEIIQIAAVRMSNGVVCSSDSFFSYVNPGRSISSFITSYTG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLT 118 + + + + + T N FD + ++P Sbjct: 61 ITNQDVGDA----PRVGTVLKDFSRYAGKATLIAHNGHRFDMKFLHAGCSRNALP----- 111 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTE-LEGLDAVAERLGVPVVN--RHSAIGDAAATAFC 175 + + +L GLD+V RL + RH A GD A Sbjct: 112 -----TRAVNYHDSIYLSRLVWGKCPGGHGLDSVLNRLQISNHGVRRHDARGDVELLAEA 166 Query: 176 FDMLRHTAAAH 186 + + H Sbjct: 167 VEKMWHLLRER 177 >UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propionibacterium acnes RepID=D1YAF0_PROAC Length = 633 Score = 145 bits (366), Expect = 8e-34, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 50/179 (27%), Gaps = 14/179 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG + + E+G + V G + V + + G + Sbjct: 67 TFCVVDLETTGTS-EGSQITEIGAVKVCGGR-VEGEFQTLVCPTGSIPASVQVLTGITDV 124 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ R N FD + R + P+ Sbjct: 125 MVRSA----PSLNAVLPSWSEFSRSTALVAHNARFDIGFLQRAYAQHDYPW--------D 172 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A A L L ++ H A+ DA AT L Sbjct: 173 DPAVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLHGLIDR 231 >UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSB2_CHLT3 Length = 578 Score = 144 bits (365), Expect = 9e-34, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 15/177 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG +E+ + G+ + + V + G Sbjct: 23 TFAVVDLETTGGLKPENRIIEICAIKCRNGQEV-GMLESLVNPEQQISYFISQYTGITNS 81 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +V ++ + F N FD + + Sbjct: 82 MVDNA----PVIQSLLTKVSEFFQETIFVAHNVPFDMGFINMELERNGYAKLTN------ 131 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + + + + L +A+ G+ V NRH A GD AT L Sbjct: 132 ----RWLCTFRLARRLLPTQQKKNLGDLAKYFGIIVENRHRARGDCEATIKLLAELI 184 >UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive type) n=5 Tax=Leuconostocaceae RepID=Q04F80_OENOB Length = 1437 Score = 144 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + D+ETTGL +++ + + G + + + + + G + Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKMKNG-VVLDTFDQFINPGFPLSEQTINLTGITDDL 468 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + A Q + AG N FD V + +P V Sbjct: 469 VKN----SKPEAEVLKMFQQFYARTILAGHNVIKFDYGFVNHALAVHKLPKINTLV---- 520 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + + LD ++++ V + + H AI D+ AT + A Sbjct: 521 ------IDTLNLARWLYPNFGRYTLDFLSKKFSVNLEHHHRAIDDSTATGMLLHIFLKEA 574 Query: 184 AAH 186 + Sbjct: 575 EEN 577 >UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clostridiales RepID=C5EVY5_9FIRM Length = 240 Score = 144 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 49/185 (26%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M I +DLETTGL+ E+ L V G V + ++ G Sbjct: 1 MTNSYIALDLETTGLEPKQEKITEIAALKVVDGVISQR-YVTFVNPGRSLGAYITQLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L +V + G N FD + + V + F Sbjct: 60 TDGMLADA----PPIEELIEDVVKFCGDLPLLGHNIRFDYSFLKHAAVNRRLEFEREG-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + L VP H A DA A + L Sbjct: 114 ---------IDTLTLCRAFMTGETRKNLSCACSYFHVPQSTAHRAQADAEAAHLLYQELM 164 Query: 181 HTAAA 185 Sbjct: 165 SRHGQ 169 >UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=C6A933_BIFLB Length = 188 Score = 144 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 58/180 (32%), Gaps = 14/180 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 I +DLETTG E+G + V G+ + V + E+ G Sbjct: 8 PMNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDR-FTQLVNPGRRVSARITELTGIS 66 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + G+ W + G N FD + + + +V Sbjct: 67 NEMLEDQ----PVIEDILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRP 122 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + P+E L + +R G+ V H A+ DA T C + R Sbjct: 123 IDTMHID---------RLLFPSERHRLVDLIQRYGIGDVEEHRALSDATQTYQCLEWQRR 173 >UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUD4_XYLCX Length = 547 Score = 144 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 59/176 (33%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL +EV +L +DT + A I+G + Sbjct: 49 FAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWSTRLNPQRTV--GATWIHGITDAD 106 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A +V L G F G N FD+ V + T+ Sbjct: 107 VAHA----PSFADVAAQVAQRLTGAVFVGHNARFDAGFVLAELTRAGWDAPEPTIW---- 158 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 AA + L VA G+ + + HSA+GDA ATA Sbjct: 159 ------CTQAASHHWLPDASSRRLVDVAAAAGISLTHAHSALGDARATAAMLTRYI 208 >UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synergistaceae RepID=C9M9P8_9BACT Length = 208 Score = 144 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 15/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D+ETTGL + +EVG L G+ ++ I+G + Sbjct: 12 YVALDIETTGLSPRSCSIIEVGALKFVPGKKGE-EFSSLIDPGCPIPASGRSIHGITDDM 70 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + + D++ N FD + +A + +TV Sbjct: 71 VAGQ----PRVEEVIAGLLDFVGPAPLVLHNAPFDLSFIAPVLDKLGRKWQAMTVF---- 122 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ L+++++ H A+ D T F Sbjct: 123 ------DTLPLSRVAFPGLRSYSLESLSDFFEFKEGVHHRALCDCWYTQQLFTRFLEK 174 >UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q83YZ1_PEWBP Length = 1492 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 56/192 (29%), Gaps = 22/192 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA--AADPKAMEING 59 +V+D+ETTG + + + + G+ + + + + Sbjct: 402 NHNYVVLDIETTGFSKTRDRIISIAAVKIQNGKIIEY-FDELINPGKDIKISNLIQRLTN 460 Query: 60 YYERGLYREALTEQQTAVAWGEVQDW---LRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 + L + + D+ N +FD + + + Sbjct: 461 ISDEILLNK----PHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPL 516 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATA 173 L + D A N + L+ + + + + H+A+ DA ATA Sbjct: 517 L--------PVIDTLTLAQKYFN-KILKYFSLEKIVKSFKIKLDSEGQYHNALFDARATA 567 Query: 174 FCFDMLRHTAAA 185 F + A Sbjct: 568 LIFLEMLEQLEA 579 >UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7J6_HYDS0 Length = 196 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 15/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V+D+ETTGL+ D +E+ V+ H + + EI G Sbjct: 9 NDIYVVLDIETTGLNPDEHEIIEIFAFLVEKERIT-KQFHRLINPGFFIPRRITEITGIT 67 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + ++++ G N FD + +++ Y Sbjct: 68 NAMLVGQ----PKVEGIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNS---- 119 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++ K I + L AVA+ + H A DA T F+ L Sbjct: 120 ------PNICTLELSKKLIPNLKSYKLSAVADYFNIKYERLHRAKDDALLTYNIFNKLMD 173 Query: 182 TAAA 185 Sbjct: 174 IIRR 177 >UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFC5_9ACTN Length = 291 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 54/179 (30%), Gaps = 14/179 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +VVD+ETTGL+ + +E+ + V G V ++ G Sbjct: 124 LPSEYVVVDIETTGLNPNKDEIIELAAIRVRGGRETDA-FQCLVRCGGELSDAIAKLTGL 182 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L E L A +++ + N FD + Sbjct: 183 SHSRLMAEGLI---LENALMNFLEFVSDDLIVAHNAEFDIGFIQSACEELDWDDFDNDY- 238 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L A + + L ++AERL + H A+ D T L Sbjct: 239 ---------LDTLALARKKLPQISDHRLSSLAERLHLENRQPHRALSDCRLTHCLLVKL 288 >UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC319F Length = 234 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 17/186 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K + +DLETTGL +E+G + G+ + + + + EI G Sbjct: 1 MIKDFVAIDLETTGLSPYDNKIIELGAVRYRDGKPVD-QYNTLINPGVHIPERITEITGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + +++ + G N FD T +A +S+ +S Sbjct: 60 DDDMVSKA----PYIDDELDRIMEFIGNDVILGHNVIFDYTFIAGALAGHSIEYSAEA-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + K + E + L+ + E + V H A DA + A + L Sbjct: 114 ---------IDTLKFAKKVLPANESKNLEHLCEMFDI-VTIHHRAYEDAMSAANVYFRLC 163 Query: 181 HTAAAH 186 + Sbjct: 164 ELSGEE 169 >UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA Length = 307 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 21/188 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + V+D ETTGL +E+G+L V E + ++ D + G Sbjct: 18 LIDDYCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDR-YDQLIKPSIEVDGFITALTGI 76 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + +V ++ + G N +FD + Sbjct: 77 TNDMLEDM----PSISSVKNDVLSFISEDIILGHNTSFDMRFLNEGFKE----------- 121 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + L + + LG+ N H A+ D AT +D ++ Sbjct: 122 ---QLSNQYMDTMQFARKLYPELKHHRLSDLTDYLGL-HNNEHRALADCIATKELYDAVK 177 Query: 181 -HTAAAHL 187 +L Sbjct: 178 SRMVEKNL 185 >UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruegeria RepID=Q1GL30_SILST Length = 479 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 58/186 (31%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 +V D ETTGL VE+ V G L V+ + +I+G + Sbjct: 272 NFVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTKIHGVRD 331 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + D+ + N FD ++ +Q V + Sbjct: 332 ADVAQ----SPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHPV---- 383 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS--AIGDAAATAFCFDMLR 180 + L + LDA+ RL + + RH A GDA ATA L Sbjct: 384 -------VDTVLLSALVFGISADHSLDALCSRLSIEIPARHRHTAKGDARATAEALIRLL 436 Query: 181 HTAAAH 186 Sbjct: 437 PLLQGK 442 >UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alphaproteobacteria RepID=B5ZV55_RHILW Length = 245 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYERG 64 I+ D ETTGLD +E+G + + V HI + P A+ ++G + Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGITDEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A E+ + + N FD + + +P Sbjct: 64 LKDKK----PFAEVAEEILTFFGDAKWIAHNATFDMGFINAELARIGLPPILPERV---- 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 L + + LDA+ R G+ +R H A+ D+ A + + Sbjct: 116 -----LDTLSMARRKHPMGPN-SLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGG 169 Query: 183 AAAHL 187 A Sbjct: 170 RQAAF 174 >UniRef50_C3RPR6 3'-5' exonuclease n=2 Tax=Bacteria RepID=C3RPR6_9MOLU Length = 443 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 17/183 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + VD+ET +Y +G++NVD + V+ A D +E+ G Sbjct: 1 MEQSITFVDVET--PNYQNNSISSIGVINVDGDGVVTTKYF-LVDPEAHFDRFNIELTGI 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W E++ + + N FD +++ Y +P P+ Sbjct: 58 TPEMVADQ----PNFKEVWSEIEPYFTNSLVVAHNAVFDLGVISACLQRYDLPIFPIFY- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 Y + P+ L+ ++ V + N H+A+ D+ A F L Sbjct: 113 ---------TCTYRISRALKIPSNSYKLNDLSSYYHVTLDNHHNALADSKACMEIFYYLL 163 Query: 181 HTA 183 Sbjct: 164 KEP 166 >UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kordia algicida OT-1 RepID=A9DMS8_9FLAO Length = 457 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 19/179 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++D+ETTG + E+ + D + V + G Sbjct: 4 NPTYTIIDVETTG---RSNKITEISIFKFDGETIVD-EFTSLVNPNVLIPTHITALTGID 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A EV + + F N FD ++ + + F Sbjct: 60 NAMVADA----PTFAEIAKEVLSITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKK--- 112 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + I + L + + L + + +RH A GDAAAT F +L Sbjct: 113 --------LCTVRLSRALIPGFKSYSLGKLCKSLNIHISDRHRARGDAAATVILFQLLL 163 >UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=A0K225_ARTS2 Length = 406 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 54/182 (29%), Gaps = 15/182 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M VVD+ETTGL E+ +++VD ++ V P+ I+G Sbjct: 1 MNAGFAVVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETLVNPQRDLGPQ--HIHGI 58 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + +V + L G N FD V+ + + Sbjct: 59 RAADILHA----PVFGDIAHDVMELLAGRVLVAHNVHFDYRFVSHELGRAGLELPFE--- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + L + G+ + N HSA DA A A Sbjct: 112 -----VHDCLCTMKLARRYLPGAGR-SLKDCCDSFGLNLANAHSAGDDAEAAAHVLSNYL 165 Query: 181 HT 182 Sbjct: 166 RM 167 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 VVD+ETTG + ++ G + ++ + ++ + L + + + G Sbjct: 5 DTYAVVDIETTGGNVASGDRMIQFGCVLLEGDQVVHR-FATNINPLTSIPKQIEHLTGLS 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + + L G N FD T ++ + MP Sbjct: 64 NKTVAQA----PYFEDIAATIYNLLDGCIIIAHNIQFDYTFLSAELQRCGMPALQNKG-- 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + ++ + L+ + + + N H A DAA TA F +L+ Sbjct: 118 --------IDTVELAQVLLPTESSYRLNDLVSKFNIEHTNPHQADSDAAVTAELFLVLKQ 169 Query: 182 TAAA 185 Sbjct: 170 KLKE 173 >UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function n=3 Tax=Proteobacteria RepID=Q3IIS2_PSEHT Length = 237 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 14/182 (7%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG+D +E+G + + H+ + ++ +A++++G Sbjct: 1 MARRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRNSEEEAIDVHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E D+++G N FD + + + + Sbjct: 61 ITNEFLRDK----PLFHQIAQEFFDYIKGAELVIHNAPFDIGHMDNEFSLLNQGYPKTAT 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 L + + LDA+ R V R H A+ D+ A + Sbjct: 117 FCQV------LDTLKMARDLHPGQKN-NLDALCRRYDVDNAKRTLHGALLDSEILADVYL 169 Query: 178 ML 179 + Sbjct: 170 AM 171 >UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlamydiaceae RepID=B0B7H7_CHLT2 Length = 232 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 53/183 (28%), Gaps = 20/183 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 LI D ETTG D VE+ + V +A +I+G Sbjct: 4 LIFYDTETTGTQIDKDRIVELAAY----NGTTSESFQTLVNPEIPIPAEATKIHGITTAE 59 Query: 65 LYREALTEQQTAVAWGEVQDWLR-GNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A+ + ++ N N AFD ++ R+ + + Sbjct: 60 VADA----PRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRRHGLSEP------- 108 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 +L + + K L + + G H A+ D F L Sbjct: 109 ---QLRTIDSLKWAKKYRTDLPQHSLQYLRQVYGFEENQAHRALDDVITLYRVFSALVGD 165 Query: 183 AAA 185 + Sbjct: 166 LSP 168 >UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Proteobacteria RepID=DPO3E_HAEIN Length = 256 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 19/181 (10%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D ETTG++ Y+ +E+G + + HI ++ DP A++++G Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVHGI 67 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + + D++ G N FD + + ++ + Sbjct: 68 TDEMLADK----PEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDIC 123 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 V + + LDA+ +RLG+ R H A+ DA A + M Sbjct: 124 LV-------TDTLQMARQMYPG-KRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 179 L 179 + Sbjct: 176 M 176 >UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiaceae RepID=B4S8Q4_PROA2 Length = 180 Score = 143 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 26/183 (14%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++I VD+ETTGL +EV + + G + + A +I+G Sbjct: 10 SGRVIAVDVETTGLSPRRGDRVIEVAAVAIVNG-VIEEHFCCLINVNAPIPTVVQKIHGI 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L E W E ++ N N FD + + + + + Sbjct: 69 TPELLAGEKPP----EAVWPEFLKFIGSNILIAHNAPFDISFIRNELRFLGLSLLNGSQ- 123 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL------GVPVVNRHSAIGDAAATAF 174 A + + L+ VA + G+ + H A GDA TA Sbjct: 124 ----------CTLAFSRKKFPQLKNHKLENVARHVLGGMPKGIKL---HRASGDALLTAM 170 Query: 175 CFD 177 + Sbjct: 171 IWQ 173 >UniRef50_C8RRD8 Exonuclease n=2 Tax=Corynebacterium jeikeium RepID=C8RRD8_CORJE Length = 198 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 21/192 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + IV+DLETTGL +E+ L++ GE + + + ++ G + Sbjct: 10 QNCIVIDLETTGLRPQEERIIEIAALHIRNGELQDKYT-TLLNPNLSVPQEITDLTGISD 68 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTF---------------AGSNPAFDSTIVARQR 107 L + + E+ ++LR T G N +FD + + + Sbjct: 69 GLLADK----PTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEI 124 Query: 108 VTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIG 167 + + + R + RL A + + + L VA L +P H A+ Sbjct: 125 LRTQLK-NSADANRPYTPRLVCTAEASRTLIPRESVGRYRLGNVASYLKIPHRPLHRAMS 183 Query: 168 DAAATAFCFDML 179 DA AT L Sbjct: 184 DALATYDVLRAL 195 >UniRef50_Q04EX4 3'-5' exonuclease domain and Rad3-related DNA helicase n=2 Tax=Oenococcus oeni RepID=Q04EX4_OENOB Length = 489 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 15/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VDLETT + +++G+ V + + V + +++ G Sbjct: 4 NSTFSIVDLETTAPFKEGGHIIQIGISFVKNWKII-NNFQTMVNPGVKIPEQIVDLTGIK 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + D L G F N +D + + M Sbjct: 63 NEDVENA----PYFEDLARMIHDQLSGTVFVAHNVRYDFPYLNGEFARIKMR-------- 110 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 RL + ++ LD + +LG+ + H A DA+ATA F + Sbjct: 111 --RLRLEYVDTVQLAQIVFPTMNSYKLDELVSKLGINLPRHHRADQDASATAQLFLKIHE 168 Query: 182 TAAA 185 Sbjct: 169 HLQE 172 >UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQP7_9ACTO Length = 286 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 18/173 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVD+ETTGL + VE+ L+ ++ G + V+ DP ++ Sbjct: 36 PFVVVDVETTGLSSTSDRIVEIALVRIEGGRVVD-EWATLVDPGRDPDP--TFVHHITAE 92 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A GE+ L G N F+ +A++ + Sbjct: 93 MLSGA----PTFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGI----------S 138 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L + + + L + G+ + + H+A+GD ATA Sbjct: 139 TAPLPAVCTLRLARQVL-AAPNFQLVSCCTVYGIELHDAHTALGDTRATAQLL 190 >UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C737_9FIRM Length = 204 Score = 143 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 14/180 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + V+D+ETTGL+ D +EVG + V + + + P+ ++ G Sbjct: 21 PEDYTVIDIETTGLNPDENEIIEVGAVKVRDRKIVDEFSSFVSPKKDIISPEIRKLTGID 80 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E + Q +++ G G N FD + Y Sbjct: 81 EAMIEGA----DQIEDVIPRFNEFIDGEILLGHNVNFDINFLYDNYERY----------S 126 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++ + + E L+ V ++LG+ V +H A+ D CF+ R Sbjct: 127 DFYLSNDYVDLLKISRKLSPEFENHKLETVLKKLGIKVDQQHRAVSDCIDAHHCFEKYRE 186 >UniRef50_Q67M39 DNA polymerase III-like protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67M39_SYMTH Length = 390 Score = 143 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 15/188 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M L+V+D ETTGL+YD +++G++ + + AM++N Sbjct: 20 MRYNLVVIDTETTGLEYDQHRIIQIGVVAIKEQRIVKTWESKLRLIDGEVSAYAMQVNRL 79 Query: 61 YERGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + E ++Q+ G N +FD + + + +P Sbjct: 80 DPSDMRSEKYPHP--KAVLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFARHGLPQWQGN 137 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + A G+ + L+++A V + H A+ DA ATA Sbjct: 138 F----------VDSMALGRALLPDL-SASLESLARHFRVELTQHHDALADAVATAHVLLH 186 Query: 179 LRHTAAAH 186 L A Sbjct: 187 LLDLAQQR 194 >UniRef50_C7RR73 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RR73_9PROT Length = 484 Score = 143 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 62/185 (33%), Gaps = 18/185 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + L+ VDLET+G ++ + +EVGL+ VD + V A P + G + Sbjct: 10 EPLVFVDLETSGANFASDRVIEVGLVEVDADGV--REWSVLVNPEAPISPFITRLTGIDD 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + D LRG N FD + + + F Sbjct: 68 AMV----GSAPTFRQLAPTLLDRLRGRLLVAHNARFDYGFLQCEFKRLGVEF-------- 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLRH 181 R L + LDA+ R G+ V RH A+ DA + Sbjct: 116 ---RTPTLCTVKLSRKLFPEHHRHNLDALVTRHGLKVAGNRHRALADARILWELWQCWHK 172 Query: 182 TAAAH 186 A+ Sbjct: 173 DLASE 177 >UniRef50_C0WGE7 Possible exonuclease n=2 Tax=Corynebacterium RepID=C0WGE7_9CORY Length = 1118 Score = 142 bits (359), Expect = 5e-33, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 59/179 (32%), Gaps = 16/179 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +K+ VVD ETTG T +E+G++ +D + V+ + + Sbjct: 4 SKRYAVVDFETTGFG-STDRVIEIGVVLLDHNREVESTWETLVQPQRDIPNSFV--HRIT 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + GE + L G T N F+ + R+ + + Sbjct: 61 PTDVVDA----PLFGEVAGEFFELLNGRTVVAHNAPFEVRFLQREFSNLGVAWPNYGAWV 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V R + L+ E +G+ HSA+ DA ATA F L Sbjct: 117 VDTKR--------LFQQTYPGEGT-TLEHALEVVGITNARPHSALADALATAELFAQLV 166 >UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHD8_9FIRM Length = 269 Score = 142 bits (359), Expect = 5e-33, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 + I+ D ETTG + + + ++ GE V + ++ G Sbjct: 77 RYIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSIPQAVCDLTGIT 136 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + D++ + N FD + ++ + T Sbjct: 137 DDMVADKCG----ICSVLSDFLDFIGDSVLVAHNAEFDLAFL-------NIKLNWYTQTE 185 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 +++ + Y G+ LD + V RH+A+GD+ TA F Sbjct: 186 IYNPVIDT---YKLGRALYPQLLSHDLDTLIRHHRVKERPRHTALGDSLMTAEIFLDYLK 242 Query: 182 TAAAH 186 Sbjct: 243 KLEKE 247 >UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Neisseria RepID=Q9JYS6_NEIMB Length = 470 Score = 142 bits (359), Expect = 5e-33, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 17/169 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLE+TG + EV L+ + G + V + G + Sbjct: 29 PVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEW--LVNPQKPIPQFVAGLTGISDG 86 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A GE+ L+G N FD T + + + FS Sbjct: 87 MVADA----PVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA----- 137 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 L + + LD++ ERLG+ V +RH A+ D +A Sbjct: 138 ------LCSVQLSRCLYPQFYKHSLDSIIERLGIVVEDRHRAMADVSAL 180 >UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothiorhodospiraceae RepID=Q0A739_ALHEH Length = 729 Score = 142 bits (359), Expect = 6e-33, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 60/185 (32%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYY 61 +V D ETTGL + V + + + G L V ++ +G + Sbjct: 535 NYVVFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNPGRTIPRSSILFHGIH 594 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + ++ + N AFD + + + F Sbjct: 595 DTTVADK----PRIETVLPRFHTFVGDSVLVAHNAAFDMKFIRLKERRCGVRFDNPV--- 647 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L D T L+A+A RLGV V +H+A GDA TA F L Sbjct: 648 --------LDTLLLSVFLHDHTADHTLEAIAARLGVEVTAQHTAWGDALVTARVFACLLP 699 Query: 182 TAAAH 186 Sbjct: 700 LLRER 704 >UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2 Tax=Desulfitobacterium hafniense RepID=B8FZZ1_DESHD Length = 929 Score = 142 bits (359), Expect = 6e-33, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 54/180 (30%), Gaps = 20/180 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++V+D+ETTG D +E L ++ GE + + + + + G Sbjct: 5 KIVVIDIETTGFDIYNDEIIEFAALCIEEGEEAEA-FSVLISPRRQVPERILRLTGISPE 63 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ D + G N FD + + + Sbjct: 64 ELKQAG----SLQAYRDKILDLFQDAIIVGHNVEFDLGFLEQALTIHFENTLW------- 112 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDMLRHT 182 ++ L + + LG+ P+ H A+ DA A Sbjct: 113 -------DTLEIARILYPNMPKYKLGDLTKSLGLTPLEKAHRALFDARAAWELLQACWEK 165 >UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Betaproteobacteria RepID=Q0AE35_NITEC Length = 234 Score = 142 bits (359), Expect = 6e-33, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 15/187 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D ETTGLD VE+ + V S H + +D A+ ++G Sbjct: 2 RYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNPGRESDEGALRVHGLSR 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + E +++ N FD + R+ + + Sbjct: 62 EFLQDK----PAFQEICSEFLEFIEDAEILIHNAPFDVGFINRELGLIRLEP-------M 110 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLR 180 ++ L + K + LDA+ ER + +R H A+ DA A + + Sbjct: 111 HNYCLQIVDTLMLAKELHPG-KRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMT 169 Query: 181 HTAAAHL 187 + L Sbjct: 170 RGQESLL 176 >UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Flavobacteriaceae RepID=A0M4R6_GRAFK Length = 507 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 55/177 (31%), Gaps = 16/177 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + D+ETTG E+ ++ V G+ + V A + G + Sbjct: 5 KFAITDIETTGNGIKGNRITEICVIVVQNGKVID-EYSSLVNPSQAIPLYIETLTGINDE 63 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 ++ Q + E+ + F N FD I+ + + F Sbjct: 64 MVFNA----PQFSEIADEITKITKDCIFVAHNVNFDYNIIRAEFASLDRDFKRK------ 113 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L K I L + + +P ++RH A GD AT F Sbjct: 114 -----RLCTVRLTKKLIPGLFSYSLGNICTSINIPHIDRHRAKGDCDATVTLFQRCI 165 >UniRef50_A8TQX4 DNA polymerase III, epsilon subunit n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQX4_9PROT Length = 458 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 15/182 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYERG 64 I +D+ETTGLD A V+ G + + G + ++ I+G + Sbjct: 15 IAIDIETTGLDASRAHAVQFGAIPIAKGVLKPDDACEQMLNPGIPIPSSSIAIHGITDAM 74 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + W + + G + FD T++A + + + Sbjct: 75 VRNA----PTLSDVWPNLVGQWKNRVVIGHSIGFDLTVLAAEAKRKKLDWQKP------- 123 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + LDA+A L + NRH A+GDA A F L Sbjct: 124 ---RALCVRMLATIAAPTLASHSLDALATWLNLETRNRHRALGDAEAAGLIFLALIPHLQ 180 Query: 185 AH 186 A Sbjct: 181 AR 182 >UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA Length = 970 Score = 142 bits (358), Expect = 8e-33, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 50/180 (27%), Gaps = 15/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVDLETT ++ +++ + V + + + + +++ G Sbjct: 34 YAVVDLETTRTTSESGRIIQIAIAFVQNKKII-NQFSTLINPHESIPRNVVQLTGINAEM 92 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + L G F N FD + + M Sbjct: 93 VAGA----PSFEEVAESIHTMLTGTIFVAHNVNFDLPFLNAEFQRIGMNTLN-------- 140 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + ++ L + L + H A DA ATA + + Sbjct: 141 --LVAIDTVTLSQIVWPTAPGFRLVDLTSYLALVHGRPHQADSDALATAELLIQIFNRLE 198 >UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chromobacterium group RepID=B9Z6P2_9NEIS Length = 476 Score = 142 bits (358), Expect = 8e-33, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 54/185 (29%), Gaps = 17/185 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VDLETTG E+G+L +D + V P + G Sbjct: 4 EQPCAIVDLETTGGHITRDRITEIGILLIDGERIERYE--TLVNPGQPIPPFIENMTGIS 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + + L+G N FD + + F Sbjct: 62 DAMVAEA----PPFAALVETLLEKLQGRLLLAHNARFDYGFLKNEFKRAGHVFQSEV--- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + LD++ R G+ + +RH A+ DA A + Sbjct: 115 --------LCTVKLSRRLYPQHFKHSLDSLIARHGIVLADRHRAMADALAVYHFIEAATA 166 Query: 182 TAAAH 186 Sbjct: 167 ELGPE 171 >UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJV7_ACIFE Length = 223 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 52/189 (27%), Gaps = 20/189 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-----LAAADPKAME 56 +VVDLETTGLD + +E+G L V G+ ++ P Sbjct: 22 PDTYVVVDLETTGLDPERDQIIEIGALEVTAGKR-GRTFSTLLQPRTPLEGQYVSPFITR 80 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 + G L Q A +L G N FD Sbjct: 81 LTGITNEMLAAA----PQPRQALEAFGKFLGSRVAVGYNVGFDM----------GFLQQQ 126 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + + L+ +A V H A+ D T CF Sbjct: 127 FQDQLYRPLANDWVDVLPMAQTLFPLWDHHRLNNLAAWYHVENKEAHRALSDVETTETCF 186 Query: 177 DMLRHTAAA 185 L+ A Sbjct: 187 RKLKEDAGR 195 >UniRef50_B1VHF1 Putative exonuclease n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VHF1_CORU7 Length = 270 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 5/176 (2%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLETTGL+ T +E+ +L V+ G + H + + ++ ING + Sbjct: 90 RCAVVDLETTGLEPATDRVIEIAVLTVEHGSIV-GSFHCLLNPECSIPGESSNINGLRDD 148 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A E+ + T G N FD +A + + + Sbjct: 149 DVAN----SPTFAEVAQELLPHVLNRTLVGHNVKFDVGFLAAEYARLGHADAARVLTEQC 204 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + AA A + + L +A G+ H A DAA T L Sbjct: 205 LPQALCTAATARELIPREAVGRYTLANLAAHCGLASSPAHRAQQDAATTFDLTHRL 260 >UniRef50_C5VCF0 Exonuclease family protein n=2 Tax=Corynebacterium matruchotii RepID=C5VCF0_9CORY Length = 2479 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 58/181 (32%), Gaps = 17/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVD+ETTG VE+ ++ +D + + + A I+G + Sbjct: 2084 TYAVVDVETTGFSTA-DRIVELAIVVLDDDGENLYEWSTLINPMRDISNGA--IHGITAK 2140 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +V L G F N FD ++ + + + L G + Sbjct: 2141 DVA----VAPTFDQVADDVAALLEGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHID 2196 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LRHT 182 + ++ LD+ +G+ HSA+ DA AT L Sbjct: 2197 --------TLRLAQNSLP-ISSRSLDSCLAFMGITNEQAHSALSDARATGRLLTRFLLDE 2247 Query: 183 A 183 Sbjct: 2248 L 2248 >UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0B3W0_BRUME Length = 234 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYYERG 64 IV D ETTGL+ +E+G + + H + P A+ ++G Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A E +++ G N FD + + + Sbjct: 64 LLDK----PVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARL-------DQAEITS 112 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + D A + LDA+ +R G+ +R H A+ DA A + L Sbjct: 113 EHIVDT--LALARRKHPIGPN-SLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIGG 169 Query: 183 AAAHL 187 L Sbjct: 170 KQTAL 174 >UniRef50_Q3K0L7 Exonuclease, DNA polymerase III, epsilon subunit family n=8 Tax=Firmicutes RepID=Q3K0L7_STRA1 Length = 604 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 52/182 (28%), Gaps = 21/182 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + I D+ETTGL+ VEVG + + G+ + V IN Sbjct: 51 NRFIAFDIETTGLNSQQDRIVEVGAVLFENGKVVD-SYESLVNAKVNISADVTRINNITN 109 Query: 63 RGLYREALTEQQTAVAWGEVQDW-----LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 R + + E+ ++ N FD + Sbjct: 110 RMIKNA----PSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLG------ 159 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ + L + + N+ + VAE + N H A DA Sbjct: 160 -----YNGEIKYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILT 214 Query: 178 ML 179 L Sbjct: 215 KL 216 >UniRef50_A5IJS5 DNA polymerase III, epsilon subunit n=6 Tax=Thermotogaceae RepID=A5IJS5_THEP1 Length = 186 Score = 141 bits (357), Expect = 9e-33, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 55/184 (29%), Gaps = 18/184 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 VVD ETTG D VE+ + V G+ H V +++G Sbjct: 8 FCVVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIRIPALVQKVHGISN 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + +D+++G N FD T + Sbjct: 68 MDIEEA----PDMDAVYNLFRDYVKGTVLVFHNANFDLTFLDMMAKETG--------NFP 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D + L + ERLG+ RH A+ DA TA F L Sbjct: 116 ITNPYIDTLDLSEEIFGRP----HSLKWLCERLGIKTTIRHRALPDALVTARVFVKLVEF 171 Query: 183 AAAH 186 + Sbjct: 172 LGEN 175 >UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2X3_9BACT Length = 185 Score = 141 bits (357), Expect = 9e-33, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 49/183 (26%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + D+ETTG+ VE+ + VD V +A+ ++ + Sbjct: 8 PFTIFDVETTGMSPVRDRIVELAAVRVDRDG-SLSRFQSLVNPGVRIPAQAVAVHHITDD 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A + ++ +T N FD + +P Sbjct: 67 MVAGA----PSFARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLPLWKGK----- 117 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAFCFDMLR 180 L + K L ++ + N H A D T ++ Sbjct: 118 -----TLDSLRLLKTTFPNLPSYNLQSLRAYFQLETEKGMNAHRAGADVEWTRQVLEIAL 172 Query: 181 HTA 183 A Sbjct: 173 SKA 175 >UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc RepID=B1MY77_LEUCK Length = 801 Score = 141 bits (357), Expect = 9e-33, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 K +VVDLETTG +++G+ + + V D ++ Sbjct: 4 NKTFVVVDLETTGQSVAKGGRIIQIGMTFIKNRRIID-HFESFVNPAQPIDRNIQQLTHI 62 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + +Q+ L N FD + + P Sbjct: 63 SQKEVKNA----PYFEEIAPVIQNLLTDTVIIAHNVNFDYPYLNDEFARTGFPELTNAA- 117 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + ++ + L + L + + N H A DA ATA F L Sbjct: 118 ---------IDTVQLAQILLPTAPGYRLLDLTTYLNITLNNAHRANADAHATALLFLSLW 168 Query: 181 HTAAA 185 A Sbjct: 169 QRAEQ 173 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 141 bits (357), Expect = 9e-33, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 16/173 (9%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K+ IVVDLETTG ++ V++G+ L + E+ G Sbjct: 4 KRYIVVDLETTGNQASREDRIIQFAACFVESGKRLE-TYTTFLNPEKPIPAFIQELTGIS 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + L F N +FD T + R+ + Sbjct: 63 PKDVKNA----PLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGI--------- 109 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 ++ L ++ + L +++ + H A DA TA Sbjct: 110 -SLGKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPHRADSDAEVTAD 161 >UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019768DE Length = 180 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 16/187 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V+DLETTG+ + +E G + V + + V + +P ++ G Sbjct: 7 LPDDYVVLDLETTGVSWYRDTIIEFGAVKVVDRKPVD-TYQQLVNPMRNLNPFITQLTGI 65 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 L + W + G N FD + P + Sbjct: 66 TPDMLE----PAPTLDTVLPDFLRWCGDDAMIGHNIMQFDIKFIDLAAQRILHHAVPNRI 121 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + L + +R + V H A+ DA T CF+ + Sbjct: 122 ----------IDTLQMSRSMYPQYNRHRLVDLIQRFDIADVEEHRALSDAEQTQMCFEYM 171 Query: 180 RHTAAAH 186 R Sbjct: 172 RDEQRRR 178 >UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidobacterium longum RepID=B3DQ35_BIFLD Length = 235 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 51/187 (27%), Gaps = 22/187 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +DLETTG ++ E+G + V G + V L + + G Sbjct: 31 PTDYVALDLETTGFYPNSCAITEIGAVRVREGHIVD-QFQQLVNPLRPIPRQITTLTGIT 89 Query: 62 ERGLYREALTEQQTAVAWGEVQDW-------LRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 + + W G N +FD + Sbjct: 90 DAMVAD----LDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHI---- 141 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 AD + L + R G+ H A+ DA T Sbjct: 142 ------AGCGFACADYDTMQISRALFPAQRHHRLADLIVRFGIADNEEHRALSDAIQTQQ 195 Query: 175 CFDMLRH 181 CF+ +RH Sbjct: 196 CFEWMRH 202 >UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-positive type n=16 Tax=Bacteria RepID=C4Z5K4_EUBE2 Length = 1513 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 16/163 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V DLETTG + +E+G + V GE + V + + Sbjct: 470 NDTYVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDR-FSTFVNPEIPIPFRIETLTHIN 528 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + + E ++ G N FD++ + + + Sbjct: 529 DQMVMNA----PKIEEILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTT---- 580 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + + + LD + + L V + + H Sbjct: 581 -------IIDTVLLAQFLMPNLHNYKLDTLTKHLNVVLESHHR 616 >UniRef50_A0PN08 DNA polymerase n=1 Tax=Mycobacterium ulcerans Agy99 RepID=A0PN08_MYCUA Length = 500 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 55/180 (30%), Gaps = 15/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG + VEVGL+ + + + A E +G R Sbjct: 98 FAVLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTLINPHRDV--GATERHGIRARD 155 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + LRG F N FD + + +P + + Sbjct: 156 VLGA----PAFEAIIPRLLRDLRGRVFVAHNVNFDQRFLLAELRRAGVP--------LDN 203 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L L + L + GV + + H A+ DA ATA L Sbjct: 204 PWLTGLCTMRWAGRLLPAA-SRKLPDCCDAAGVFLTDAHRALADARATASLLKYLIDHCG 262 >UniRef50_B0UD78 DNA polymerase III, epsilon subunit n=5 Tax=Alphaproteobacteria RepID=B0UD78_METS4 Length = 238 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 60/184 (32%), Gaps = 13/184 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IV+D ETTG D T VE+G + + H + A+ ++G + L Sbjct: 5 IVLDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQRPVSQGALAVHGLADAFL 64 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + A D+ TF N AFD + + P + Sbjct: 65 ADK----PPFAAILPAFLDFCGDATFVIHNAAFDVGFLNAEYARLGDAAPP----AIDLA 116 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHTA 183 + D A + LDA+ R G+ R H A+ DA A + L Sbjct: 117 GVVDT--LALARRKHPNAAN-NLDALCARYGIDNSRRTKHGALLDAQILAEVYIELLGGK 173 Query: 184 AAHL 187 L Sbjct: 174 QTSL 177 >UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma mobile RepID=Q6KIN3_MYCMO Length = 1433 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 17/184 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V DLETTGL +E G + G+ + + V+ K I G Sbjct: 397 NETYVVFDLETTGLSPIFDDIIEFGAQKILNGKVIDTLQF-FVKPNKEISEKITLITGIK 455 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A ++ +++ +T N FD + + Y+ S L + Sbjct: 456 NQDVENAI----SEKEALKKILEFMGDHTVVAHNATFDMNFINEKIEKYNFQESNLQI-- 509 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDML 179 + K+ + L+ +A R G+ H A DA A +++ Sbjct: 510 --------IDTLVVSKIIEPEAKKFSLENLASRSGIIYNSTEAHRADYDADVLAKVWNLY 561 Query: 180 RHTA 183 Sbjct: 562 IQKL 565 >UniRef50_A4U2R7 DNA polymerase III, epsilon subunit n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U2R7_9PROT Length = 459 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 60/184 (32%), Gaps = 15/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 ++V+D ETTGLD V VG + + V +A I+G E Sbjct: 256 PVVVLDTETTGLDAARDAIVSVGAVRCHGSRIYRAAMLDLLVNPGRRIPARATAIHGIDE 315 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + E+ + G FD ++ + ++P Sbjct: 316 SMVAGK----PDLAASLPEIAAIMDKAVVVGHQIGFDLALLRHGTERLGLDWTPP----- 366 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L +D A R+GV + RH+A+GDA TA + L Sbjct: 367 -----PRLDILLLSAALAPDESGHEIDDQAARMGVNISGRHTALGDALVTAELWVRLIPQ 421 Query: 183 AAAH 186 Sbjct: 422 LERA 425 >UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_LACRG Length = 933 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 50/183 (27%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVDLETTG D ++ G V G+ + + + + G Sbjct: 6 TFAVVDLETTGTSVKDGDRMIQFGCALVRHGKII-QTISQMINPDRSVPQTIQRLTGISP 64 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + L F N FD + + +P L Sbjct: 65 ERLVAA----PYFDEVAPALHQVLTKTVFVAHNVNFDYPFLNAEFERIGLPKLQLEA--- 117 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + ++ + L + + N H A DA +TA L+ Sbjct: 118 -------IDTVELAQVLLPEISSFRLSDLTTHFAIQHDNPHQADSDATSTAKLLLQLKAR 170 Query: 183 AAA 185 A Sbjct: 171 FQA 173 >UniRef50_Q48KX3 DNA polymerase III, epsilon subunit n=35 Tax=Proteobacteria RepID=Q48KX3_PSE14 Length = 259 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 13/177 (7%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG+ D +E+G + + H+ ++ +D A+ ++G Sbjct: 11 IVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITNEF 70 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + A E ++++G N AFD + + H Sbjct: 71 L----VGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQ---H 123 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + D A + P + LDA+ +R GV R H A+ D+ A + + Sbjct: 124 CSILDTLMMARER---HPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAM 177 >UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinobacter RepID=A3JBF5_9ALTE Length = 483 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +DLETTG T E+G+ GE + V P ++ G Sbjct: 10 TTTFAFLDLETTGGSVATDRITEIGIQFWRAGECV-GQWQTLVNPKTRISPFIEQLTGIS 68 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E++ L G F N FD V + F Sbjct: 69 NAMVADA----PLFEDIADELEQRLDGVVFVAHNARFDYGFVKGEFRRLGRMF------- 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + +DA+ ER G+ V RH A+GD AA F+ + Sbjct: 118 ----VAKVLCTVKLSRRLYPEFRRHNMDALIERHGLQQVQRHRAMGDVAAMLGFFEHVLA 173 Query: 182 TAAA 185 Sbjct: 174 QQGE 177 >UniRef50_A3V111 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V111_9RHOB Length = 469 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 63/186 (33%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +V D ETTG + V++G L V G+ + V A + ++ + Sbjct: 275 TYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLVNPGRAIPASSTAVHRITD 334 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + + R N FD + R M F Sbjct: 335 AMVKDA----PDMVHAGRKFHSFARDAVLVAHNAPFDLSFFHRYAPKIGMKFDHPV---- 386 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV--VNRHSAIGDAAATAFCFDMLR 180 L + TE LD +A+RLG+ + +RH+AIGDA AT F + Sbjct: 387 -------LDTVLLSAVLFGITEGHTLDELAKRLGIELLDKHRHTAIGDAIATRDIFLRMI 439 Query: 181 HTAAAH 186 A Sbjct: 440 PMLEAR 445 >UniRef50_C3XME5 DNA polymerase III subunit epsilon n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XME5_9HELI Length = 267 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 19/186 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 + +VD+ET G + P+E+G L V G+ + F + A +I G Sbjct: 69 ETFCIVDIETNGHNPCVHTPIEIGTLKVRNGKVVDCFESFVF---NAEIPEYITKITGIN 125 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L + A + + +L + F N FD +++ + Sbjct: 126 AQMLENA----PKLASVLEKFKLFLGDSIFVAHNVDFDYNFLSQSLEKCGFGYLYN---- 177 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + L + E LG+ N H A+ D+ F + Sbjct: 178 ------PRLCTIKLAQRVL-QAPRYSLGFLNEFLGINHQNLHRALQDSKTALEIFKICLK 230 Query: 182 TAAAHL 187 +L Sbjct: 231 KIPKNL 236 >UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Streptococcus pneumoniae RepID=A5LFK6_STRPN Length = 307 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M+ + +D+ET + +GL+ G + + + D + I+G Sbjct: 1 MSYSYVALDVET--ANDFRGSVCSIGLVKFKDGNIVD-TFYTLINPEEEFDDFNIFIHGI 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + D++ + FD + Y + F + Sbjct: 58 TPEDV----LDSPTFPEVRKSIVDFIGLDIVVAHFAQFDMGALKDVYQKYELDFDNIEY- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +Y K+ + L +A+ L + + H+A+ DA A+ + L Sbjct: 113 ---------ICSYRLAKVALPGQLNYKLKRLAKNLNIELD-HHNALSDARASGLILEYLL 162 >UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) n=2 Tax=Rhodocyclaceae RepID=Q5P3L6_AZOSE Length = 469 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 57/180 (31%), Gaps = 17/180 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L+++D+ETTG + + E+ +L ++ GE + V + G Sbjct: 3 LPDSLVLIDVETTGANPVSDRVTEIAVLRIERGEIVGR-WESLVNPERPIPALIQRLVGI 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A V+ L G F N FD + + F Sbjct: 62 TDEMVAGA----PTFAELADSVRGHLDGAVFVAHNARFDYGFIRNEFSRLGQQFEASV-- 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + GLDA+ ER G RH A+GD F L Sbjct: 116 ---------LCTVKLSRALYPEHHRHGLDALIERHGFTCGARHRAMGDTDVLWQ-FARLV 165 >UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4 Length = 922 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 59/182 (32%), Gaps = 16/182 (8%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ ++VD+ETTG+ + +++ + ++ + + + V + P + Sbjct: 2 ERFVIVDVETTGVSFIKGDRIIQIAFVVIEGKKIIDR-FNSYVNPMRDIPPFIRSLTNIN 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + L G F N FD + + + V Sbjct: 61 DNEVKDA----PTFDLVAPRLLQALDGAFFVAHNVDFDLSFINEELHALGYTGLSGPV-- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + K+ + L ++E L + H A DA ATA F + Sbjct: 115 --------IDTVELSKIAYPTADGFRLSQLSESLHMNHDQPHRADSDAEATALIFLEIMD 166 Query: 182 TA 183 Sbjct: 167 KL 168 >UniRef50_C9NHS4 DNA polymerase III, epsilon subunit n=2 Tax=Streptomyces RepID=C9NHS4_9ACTO Length = 346 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 17/173 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL + + +D + + V P + I+G Sbjct: 32 YAVVDVETTGL-ARDDRIISAAVYRLDARGDVEDHWYTLVNPERDPGP--VWIHGLTSDV 88 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E+ + L G N AFD +++AR+ ++ Sbjct: 89 LEGA----PLFPQVAAELSERLAGRVLVAHNAAFDWSMIAREYARAAVTAPVEQ------ 138 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L A K P L+++A GV + H A+ DA A F Sbjct: 139 ----RLCTIALAKELRLPLPNHKLESLAAHFGVVQQHAHHALDDARVLAEAFR 187 >UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4L7K7_STAHJ Length = 219 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 18/182 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M I +D ET + VG++ V E + + V +E++G Sbjct: 37 MGNAFIALDFET--ANGKRTSICSVGMVKVVNNEIVE-SFYTLVNPFDYFSQTNIEVHGI 93 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + ++ N AFD ++ + ++ Sbjct: 94 TPEDV----IDAPSFEYVFPYMMQFIDKLPVVAHNAAFDMNVLHQSLKQLNIETPS---- 145 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +Y K ID GL + + + H A+ DA A A L Sbjct: 146 ------MIYFCSYQLAKRTIDAYR-YGLKHLMKHYKLDFHGHHDALNDAKACAMITFRLL 198 Query: 181 HT 182 Sbjct: 199 KH 200 >UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY86_DICNV Length = 233 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 21/188 (11%) Query: 1 MAKQLIVVDLETTGLD------YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA 54 M+ + ++ D ETTG++ + +E+G + + H + DP+A Sbjct: 1 MSFRSVIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPEQPVDPQA 60 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSMP 113 +++G + L + E + + + N AFD + R+ Sbjct: 61 FKVHGISDEFLADK----PFFKDVLPEFEAYLASADELVAHNIAFDRQFIDRELQLAGCD 116 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAA 171 + + + + + LDA+ +R GV R H A+ DA Sbjct: 117 YRLGDKFTL-------VDSLKIAREKFAGARN-NLDALCKRFGVDNTGRELHGALLDAQL 168 Query: 172 TAFCFDML 179 A + L Sbjct: 169 LAEVYLKL 176 >UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Proteobacteria RepID=DPO3E_SALTI Length = 243 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 18/181 (9%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D ETTG++ Y+ +E+G + V H+ ++ DP+A ++G Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVHGI 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + A E D++RG N +FD + + Sbjct: 69 ADEFLLDK----PVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTF 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + A + + LDA+ R + R H A+ DA A + Sbjct: 125 CKV------TDSLALARKMFPG-KRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLA 177 Query: 179 L 179 + Sbjct: 178 M 178 >UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K928_THASP Length = 502 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 55/181 (30%), Gaps = 17/181 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 L VD+ETTG E+G++ VD V + + G + Sbjct: 12 LAFVDIETTGGPAQRESITEIGIVQVDEDGV--REWSTLVRPASRIPETIQRLTGIDDDM 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + EV D L G F N FD + + P Sbjct: 70 VADA----PRFEDIADEVFDRLDGRLFVAHNARFDHGHLRAAFRRAGLDMRPQV------ 119 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + GLD + ER G+ V +RH A+GDA + + Sbjct: 120 -----LCTVKLSRRLFPDHRRHGLDHLIERHGLAVADRHRALGDARLLWQFWQKIHERFP 174 Query: 185 A 185 Sbjct: 175 P 175 >UniRef50_A4SZE6 DNA polymerase III, epsilon subunit n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SZE6_POLSQ Length = 466 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 54/184 (29%), Gaps = 17/184 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 L VD+ETTG +D E+G+ + + + + G Sbjct: 9 PDLAFVDIETTGSHFDRDRITEIGIKTLANDGIQVWER--LINPQTFIPQNIQRLTGISP 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + E++ L G F N FD + + F P Sbjct: 67 QMVEGQ----PSFDQVAKELKQELEGKIFVAHNARFDYGFIKASFKRVGIDFKPKV---- 118 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L +L LD + G+ V RH A+GDA + + Sbjct: 119 -------LCTVKLSRLLFPEQPRHNLDTIINAHGLQVSARHRALGDADLLLQFWRVCEAK 171 Query: 183 AAAH 186 A Sbjct: 172 FGAE 175 >UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit n=4 Tax=Lactococcus lactis RepID=D2BLE9_LACLK Length = 794 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 16/179 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + VVDLE T +++G++ V+ GE + V P+ E+ G Sbjct: 4 MT-RYAVVDLEATDAHSSENKIIQIGIVLVEDGEIVE-TFSTEVNPHEPLLPRISELTGL 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ L T + + G+V++ L + F N FD ++ + + + F+ Sbjct: 62 SDKQLK----TAPEFSEVAGKVRELLTDSVFVAHNARFDYGLLEKSFLNAGLEFNE---- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + ++ E GL++++E+L + + H+A+ DA ATA + Sbjct: 114 ------MLRVDTVDLARVFYPTFEKYGLESLSEKLDLAHDHPHAAVSDAYATAELLLKI 166 >UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVH7_9AQUI Length = 215 Score = 139 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 70/188 (37%), Gaps = 18/188 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V D ETTGLD A V +G L V + ++EI+G Sbjct: 37 ETTFVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFHRFVKPKELTRVSVEIHGIT 96 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ-RVTYSMPFSPLTVG 120 L ++A + + +++RG+ G N FD IV + +P Sbjct: 97 PHELEKKAESH---DRVLEDFMEYVRGSVLVGFNVEFDRKIVEKYSLKVLGLPLLNYR-- 151 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D+ + + L +AE LG+PVV HSA+ DA TA F L Sbjct: 152 -------LDVFRLWKKRGGREG----SLKDIAEELGIPVVGAHSALDDAYITALVFLKLL 200 Query: 181 HT-AAAHL 187 A+L Sbjct: 201 KRFRGANL 208 >UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplasma RepID=Q600A7_MYCH2 Length = 1469 Score = 139 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + ++ DLETTGL VE G + + G + ++ P +I G ++ Sbjct: 410 KFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKHQF-FIKPTGKIPPAITKITGISQK 468 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + T +A ++ ++ + N AFD + + + + Sbjct: 469 MIDE---TAISWEIALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQ--------KAKKSL 517 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRH 181 + + D + + L VA+R + H A DA + Sbjct: 518 KNPIIDT--LEVSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLA 575 Query: 182 TAA 184 Sbjct: 576 ELK 578 >UniRef50_Q2VYH6 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease n=93 Tax=Bacteria RepID=Q2VYH6_MAGSA Length = 257 Score = 139 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG D VE+G + + V H +A +++G Sbjct: 31 IVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPERDMPEEAFKVHGLSADF 90 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A + +++ N FD + + P P++ Sbjct: 91 LSDK----PLFAEIVADFLEFIGDVPLVIHNAEFDMRFINAELTRLGFPPLPMS------ 140 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + + + LDA+ R + +R H A+ D+ A + L Sbjct: 141 ---RSIDTVMMARKRFPGAQ-ANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLIGG 196 Query: 183 AAAHL 187 L Sbjct: 197 RQPGL 201 >UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacteria RepID=A1K1I0_AZOSB Length = 231 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 18/183 (9%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 V+D ETTG+ + A P E+ ++ V G + + + + G Sbjct: 29 DTYAVIDFETTGMAPEHGARPTEIAVVLVRNGCVIDRYQSLM-NAGVHVPYEIQALTGIT 87 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A + D++ + N AFD + Sbjct: 88 NAMVRAA----PPLAQVMAQAADFVGSHALVAHNAAFDRKFWDAELDRLGR--------- 134 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 + + + + L + LG+P R H A+ DA ATA F + Sbjct: 135 --RREADFVCSLLLSRRVFPDSPNHKLGTLVRTLGLPASGRFHRALADAEATAQLFARIA 192 Query: 181 HTA 183 HT Sbjct: 193 HTL 195 >UniRef50_C9RIR1 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIR1_FIBSS Length = 215 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 53/199 (26%), Gaps = 30/199 (15%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLN----VDTGESL---YFVPHITVEQLAAADPK 53 + + + DLETTGL +E+G + V G + V+ + Sbjct: 4 LPPKFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPNMLIPAE 63 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSM 112 A +N ++ + A + + + N FD++ + Sbjct: 64 ATNVNHITDKMVENA----PPVGEALKQFTAFCGPGSILLAHNANFDASFLRTAYEQNPQ 119 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--------GVPVVNRHS 164 V + + A K + L +A + H Sbjct: 120 FTPGNPV----------VDSLAISKTIMPELANHKLGFMANMFMKRGEISMTIDEEKMHR 169 Query: 165 AIGDAAATAFCFDMLRHTA 183 ++ D F L Sbjct: 170 SVYDCEMLMEVFVALLRRR 188 >UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales RepID=C4PPS2_CHLTJ Length = 250 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 15/180 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D ETTGLD +E + E + V + A ++ +I+ + Sbjct: 8 EFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVEF-LIHPERAVSAESQKIHKISDA 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + + ++ + + + G + FD +++++ Sbjct: 67 MLRDK----PKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLG------ETLLP 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 HH + D A + L+A+A VP H A+ D F L Sbjct: 117 KHHYVIDTLRLA---KEYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMNVKVFKHLTKR 173 >UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ64_9FIRM Length = 1442 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V DLETTGL +E G + + G L + ++ + + Sbjct: 390 EATYVVFDLETTGLSAKYDYMIEFGAVKIKNGLRLDSKQ-LFIKPPISIPAFIEKKTNIS 448 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E+ ++ N +FD + + S V Sbjct: 449 NEMVRNAK----SFSEVVDELLAYIGDAVLVAHNASFDFPFLNEELRRLSRKPLTNPV-- 502 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDML 179 + + + L+ V+ + + H A DA A F+ L Sbjct: 503 --------IDTLDMARAILSDRSRFALEYVSNHYKLNYSRSDAHRADYDANILADAFEHL 554 Query: 180 R 180 Sbjct: 555 L 555 >UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=11 Tax=Bacilli RepID=DING_STAEQ Length = 902 Score = 139 bits (351), Expect = 5e-32, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG D +++G+ V + + H + P + E Sbjct: 5 TFAVVDLETTGNQLDYDEIIQIGITFVRQNQVID-TYHSMIRTDLEIPPFIQALTSIEEE 63 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ ++ F N +FD + + ++ F P V Sbjct: 64 ML----VQAPYFNEVADDIYQLIKDCVFVAHNISFDLNFIKKAFEKCNIQFKPKRV---- 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + K+ + L A+AE +P+ N H A DA TA Sbjct: 116 ------MDTLELFKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATTTAKLMIKAFEKF 169 Query: 184 AA 185 Sbjct: 170 EQ 171 >UniRef50_C3RQT5 DNA polymerase III subunit epsilon n=1 Tax=Mollicutes bacterium D7 RepID=C3RQT5_9MOLU Length = 224 Score = 139 bits (351), Expect = 5e-32, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 58/189 (30%), Gaps = 19/189 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-----LAAADPKAMEI 57 ++ +V DLETTG + +E+G + V G + K E+ Sbjct: 39 QEYVVFDLETTGFNKKEDRIIEIGAIKVKNGRVVDR-FSTLCAPIKGGKPMYISAKITEV 97 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSN-PAFDSTIVARQRVTYSMPFS 115 G L + A WL + N FD + ++ F Sbjct: 98 TGIKNVDLLNQIPES----EAVKNFMCWLGESKISVAHNGLKFDIPFLKEACKRSNVEFK 153 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + L + A +N + +A GV H A+ D A Sbjct: 154 FTHILDTM------LLSKALNYVNNGNIPNNKQETLARYFGVD-YQAHRAVNDCEALLKI 206 Query: 176 FDMLRHTAA 184 FD L++ A Sbjct: 207 FDKLKNDAK 215 >UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anaplasmataceae RepID=Q2GJZ1_ANAPZ Length = 244 Score = 139 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTGLD D +E+G + + V H ++ A ++G Sbjct: 6 IVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHGITRES 65 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + A E+ D+L+ + N FD + + S + Sbjct: 66 L----IGMPKFAEVADELLDFLQDSALVIHNARFDMRFLEVEIERLSNKRAITNTI---- 117 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + + LDA+ +R + R H A+ DA A + L Sbjct: 118 -----VDTLEMARKKFPGMP-ASLDALCKRFNISTQERKFHGALKDATLLARVYVELLEA 171 Query: 183 AAAHL 187 L Sbjct: 172 LQRRL 176 >UniRef50_C1QET6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QET6_9SPIR Length = 252 Score = 139 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 58/188 (30%), Gaps = 18/188 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++D+ETTGL +E+G + + + T+ ++ Sbjct: 58 PANYTIIDVETTGLKPREDKIIEIGAIKYRDNKEID--YFSTLVKVDYIPNFISSYTNIT 115 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + A + D++ + G N FD + + Sbjct: 116 NKMVKNA----PRVDEAIKQFYDFVGDDILVGYNVPFDIKFLYDAL------YEVSNGEL 165 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML-- 179 + ++ D+ K + E VA + + N H A+GD + ++ L Sbjct: 166 LLNNDFIDV--MYIAKRVLKDLENYKQVTVASYYNISIDNLHRAMGDCKLCSAIYECLQK 223 Query: 180 --RHTAAA 185 A Sbjct: 224 DILEKWGA 231 >UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neorickettsia RepID=C6V4W1_NEORI Length = 228 Score = 139 bits (350), Expect = 6e-32, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 16/177 (9%) Query: 6 IVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGLD + +E+G + + + HI + +A ++G Sbjct: 7 VILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPEREISKEATRVHGITFEQ 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + ++ + N +FD + + + + Sbjct: 67 LAD----SPKFIDIADDFLQFIGSSEIVAHNASFDIRFLNSELIRARQRRLIKLENVID- 121 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 A + + LDA+ R + + R H A+ DA A + L Sbjct: 122 -------TLAMARKIFPGSP-ASLDALCRRFRISLEQREFHGALLDAQLLARVYIEL 170 >UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NF23_9LACT Length = 875 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ V+DLETTG Y+ + G + + + + + + + + G Sbjct: 1 MHRKYAVIDLETTGPKYEQGDRIFQFGCTLITDHKIVE-HITLNINPEQSIPFEIQLLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMPFSPLT 118 + + + + L G T N FD + + Sbjct: 60 VTNADVEKA----PYFDEVAMNIYNLLEGRTLVAHNVGFDGPFIITALKEALGIELE--- 112 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + ++ L + L +P H+A DA ATA F + Sbjct: 113 --------VPFIDTVQLAQICYPSAISYRLSDLTNMLKIPHTQVHTAGSDARATAQLFLI 164 Query: 179 LRHT 182 L+ Sbjct: 165 LQEK 168 >UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gammaproteobacteria RepID=Q5ZVQ6_LEGPH Length = 251 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 15/177 (8%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTG+ + +E+G + + + HI + D A ++G Sbjct: 22 VILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTEF 81 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E ++ G+ N FD + + + R+ Sbjct: 82 LQDK----PLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRI-- 135 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 L + LDA+ +R + NR H A+ DA A+ + + Sbjct: 136 -----LDTLILAREKHPGQRN-SLDALCKRYEIDHFNRELHGALLDAEILAYVYLAM 186 >UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5I0_9CHLA Length = 231 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 20/177 (11%) Query: 9 DLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYRE 68 D ETTG+ D +E+ + + + P+A I+ + + Sbjct: 7 DTETTGIKADRDYVIELAVYDPVGNR----TFERLINPGVPIPPEATAIHHITDEMVANA 62 Query: 69 ALTEQQTAVAWGEVQDWL-RGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 E +++ N FD + + + P Sbjct: 63 ----PSFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKF------- 111 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + L + G+ N H A+ D F + Sbjct: 112 ---LDTLKWARRYRNDLPRHTLQFLRGIYGIAENNAHRALDDVIVLHQVFSAMLDDL 165 >UniRef50_D1WX09 DNA polymerase III, epsilon subunit n=17 Tax=Streptomyces RepID=D1WX09_9ACTO Length = 341 Score = 138 bits (349), Expect = 8e-32, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 55/173 (31%), Gaps = 17/173 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL + + +D ++ + V P + I+G Sbjct: 19 YAVVDVETTGL-ARDDRIISAAVYRLDALGNVEDHWYTLVNPERDPGP--VWIHGLTSDV 75 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E+ L N AFD +++AR+ S+ Sbjct: 76 LEGA----PLFPEVAEELSARLADRVLVAHNAAFDWSMIAREYARASVVAPVEQ------ 125 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L A K P L ++A GV H A+ DA A F Sbjct: 126 ----RLCTIALAKELRLPLPNHKLASLAAHFGVVQQRAHHALDDARVLAEAFR 174 >UniRef50_B6FWT9 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FWT9_9CLOT Length = 276 Score = 138 bits (349), Expect = 8e-32, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 54/188 (28%), Gaps = 19/188 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV DLETTGL+ E+ + D E + + H V K ++ G Sbjct: 96 YIVFDLETTGLEAHKEAITEIAAIKFDYDEPVEY-FHTYVNPKKKIREKITDLTGITNEM 154 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS---PLTVGR 121 + ++ T N +FD + + + Sbjct: 155 VASA----PPIEYVLPNFLKFIDKYTLISHNVSFDMSFILDPMYNLGYKKPGNKAIDTLA 210 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV----NRHSAIGDAAATAFCFD 177 + + D L+ + +LG+P+ H+A+ D F + Sbjct: 211 LARRFMKDEDTGKR-------LSSYKLEDLKYQLGLPLDVYDIKSHNALYDTKVAYFLYK 263 Query: 178 MLRHTAAA 185 R Sbjct: 264 NCRELKEE 271 >UniRef50_Q6MIB4 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIB4_BDEBA Length = 276 Score = 138 bits (348), Expect = 9e-32, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 49/180 (27%), Gaps = 19/180 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + D ET+G VE G + GE + + + + I+G Sbjct: 11 TYVAFDTETSGAYPVGHDVVEFGAVKWYKGEEVGRLQF-LFKPREPMTDFIIGIHGITNE 69 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E+ ++ +G + FD +A +P P Sbjct: 70 MVADA----PLITEKIREIHEFFKGAIVMAHHAPFDLGFMAIDFEKNQLPLLPE------ 119 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC----FDML 179 L + I E L + L + H A DA A F + Sbjct: 120 ----PALCTSLLSRKWIHGVENHKLQTLVRHLNIDGGQAHRAYDDAKACLHVGLACFAKM 175 >UniRef50_B9L0P4 DNA polymerase III epsilon subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0P4_THERP Length = 228 Score = 138 bits (348), Expect = 9e-32, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 50/181 (27%), Gaps = 5/181 (2%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGYYER 63 V+D E TGLD + + +G + + L + + +++ ++G Sbjct: 33 YTVLDAEMTGLDPERDELLALGAVRMVGTRLLLGASFYQLIRPQRQGWGQSVTVHGIRPV 92 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E + + G D + R + + Sbjct: 93 DVVGA----PPLEQVLPEFVRFCASSILVGHGVEIDRKFLQRAAARCGLSWPRTYWVDTG 148 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + + A L+ + + RH A+ DA TA + Sbjct: 149 RVARWLTSHHGALPEAAADRGRFSLEDLLAAYEIEPPARHHALADAFVTALVWQRQLTEL 208 Query: 184 A 184 A Sbjct: 209 A 209 >UniRef50_A5IU60 Exonuclease, RNase T and DNA polymerase III n=64 Tax=Staphylococcaceae RepID=A5IU60_STAA9 Length = 184 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 19/185 (10%) Query: 1 MAKQ-LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + + +D ET + VG++ V + H V + ++++G Sbjct: 1 MIQDAFVALDFET--ANGKRTSICSVGMVKVIDSQITE-TFHTLVNPQDYFSQQNIKVHG 57 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + ++ N AFD ++ + +P LT Sbjct: 58 IQPEDVENA----PTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTY 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + +Y GL + E + H A+ DA A A L Sbjct: 114 FCSYQLAKRTVDSY-----------RYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRL 162 Query: 180 RHTAA 184 Sbjct: 163 LKNYE 167 >UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EC49_MACCJ Length = 850 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 15/182 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M ++ VVD+ETTG + D+ ++VG+ V + + + + Sbjct: 1 MNRKYAVVDIETTGNNLDSDEIIQVGIAIVQNKKIIE-TYDTFIACNNEIPAFIQSLTKI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + L G F N FD + + F P Sbjct: 60 DAFDLVDA----PNFSHVASHIIKLLDGCVFVAHNVQFDLRFLQKYFSEAGHKFQP---- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + D + K+ E L ++A+ LG+ + + H AI DA ATA F Sbjct: 112 ----RYIIDTVDWF--KIVYPSLERYQLKSIADDLGIELSSAHRAIDDAVATAEVFIESI 165 Query: 181 HT 182 Sbjct: 166 KK 167 >UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Burkholderia cepacia complex RepID=A0K8A7_BURCH Length = 212 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 53/186 (28%), Gaps = 18/186 (9%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + V+D ETTGL + E+ ++ + G+ + + + + G Sbjct: 9 QTVAVLDFETTGLSPNLGDRATEIAVILLRNGQVVDR-FQSLMNAGRRIPSDVVALTGIT 67 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + T + E ++ + N FD + M Sbjct: 68 NDMIA----TAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSADHAFA-- 121 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLR 180 + L ++AE L +P H A+ DA + L+ Sbjct: 122 ---------CTMLVARRIYPDARSHRLSSLAEMLRLPQTGRAHRAMVDAEMAGHLWCRLQ 172 Query: 181 HTAAAH 186 + Sbjct: 173 QDISRT 178 >UniRef50_C8P2F2 Gram-positive family DNA polymerase III, alpha chain n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P2F2_ERYRH Length = 200 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 53/183 (28%), Gaps = 15/183 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V+DLETTG E+ + + + V+ + P +E+ G E Sbjct: 13 PNFTVIDLETTGRSNKFEDITELSAIKYRNYKQVDA-FSTLVKPDNSILPFVVELTGITE 71 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + D++ + G N FD Y + + Sbjct: 72 EMVSDA----PKIDQVIKQFVDFIGTDVILGHNVMFD----------YGLVYDAYLATVG 117 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + +L ++ L+ + V + H D TA + ++ Sbjct: 118 LRMHNDYVDTLRVSRLLNKDSKNHKLETLCAYFDVERLVGHRGSEDCLQTAEVYIKMKDK 177 Query: 183 AAA 185 Sbjct: 178 YKR 180 >UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Roseobacter RepID=Q16CY8_ROSDO Length = 228 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 17/183 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG D + VE+G + + + H + + +A +++G + Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPERSMPEEAFQVHGLGDDF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + A D++ N AFD + + ++P P Sbjct: 64 LRDK----PKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELGWINLPKIPWEQA---- 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + + + LDA+ R G+ +R H A+ D+ A + L Sbjct: 116 -----IDTLDIARKRFPGSPA-SLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELIGG 169 Query: 183 AAA 185 Sbjct: 170 RQP 172 >UniRef50_C8NPX3 DNA polymerase III epsilon subunit n=5 Tax=Corynebacterium RepID=C8NPX3_COREF Length = 494 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHIT--VEQLAAADPKAMEINGYY 61 + D+ET + D ++GL+ + G + E L +P + I+G Sbjct: 125 DFVAFDVET--ANDDWGSICQIGLVRYENGVEVDSTSWFCTPPEPLNFFEPANIAIHGIT 182 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E A ++ D++ N FD T ++R + G Sbjct: 183 AEQVAGE----PAFAEVLPKMVDFVGDLPLVAHNAQFDFTAISRACAAAGIEAPVFNFG- 237 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + A + + L VA+ LGV + H A DA A A L Sbjct: 238 ---------CSLALSRSSRLKFHNHRLPTVAQALGVELRKHHDATEDARACAGITIELAR 288 Query: 182 T 182 Sbjct: 289 R 289 >UniRef50_C5EZ00 DNA polymerase III subunit epsilon n=2 Tax=Helicobacter RepID=C5EZ00_9HELI Length = 247 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 46/177 (25%), Gaps = 19/177 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGY 60 ++ +VD+ET G + P+E+G + G F + +I Sbjct: 68 EQKFCIVDIETNGHNPFLHQPIEIGAILYQNGMVQKEFQSFVFC---EEIPEYITKITNI 124 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + +L F N FD ++ Y + Sbjct: 125 TTEMLRNA----PPIHQVLESFRIFLGDCVFVAHNVGFDYGFLSNSLHHYGFGYLYN--- 177 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L + L+ + L + H A+ DA F Sbjct: 178 -------PSLCTIKLAQKTF-QAPRYSLEFLNGFLNINHSPLHRALEDAKVALEVFK 226 >UniRef50_C4GLS9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLS9_9NEIS Length = 464 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 63/184 (34%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++++DLETTG + E+ L+ G+ V+ ++ G + Sbjct: 23 PVVILDLETTGGHFYADRITELAFLHFWQGKITAVQQ--LVQPNMPISGFVRDLTGISDE 80 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A +V LRG+ N FD T + + F+ Sbjct: 81 MLQGQ----PTFAQFAPQVLPLLRGSLLIAHNSRFDYTFLRHECRRNGFAFATAG----- 131 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + LD++ ER G+ V +RH A+ D A A + Sbjct: 132 ------LCSVQLSRKLYPEFFKHNLDSIIERHGLAVASRHRAMSDVLAVAEYLQLALREK 185 Query: 184 AAHL 187 A L Sbjct: 186 GAPL 189 >UniRef50_B8R965 Putative DNA polymerase III epsilon subunit (Fragment) n=1 Tax=uncultured bacterium 1114 RepID=B8R965_9BACT Length = 312 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 62/184 (33%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 + +D ETTGLD V +G + + V + A I+G + Sbjct: 27 PVTALDTETTGLDPGRDRIVAIGAVRLHGRRLYPSRTFETLVRPGISIPASASAIHGIGD 86 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A W + WL G G + FD ++ + ++ Sbjct: 87 AMVAGA----PGMAEIWPRLSPWLAGRVVLGHHVDFDLAMIGAAARRHGFSWTE------ 136 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D A A +D + LD A+R GV + RHSA+GD+ A + L Sbjct: 137 --PFALDTARLVAA---LDGSSPVDLDEAAQRHGVTLEGRHSALGDSLIAARVYLRLVPR 191 Query: 183 AAAH 186 Sbjct: 192 LVER 195 >UniRef50_Q9K6I8 BH3741 protein n=1 Tax=Bacillus halodurans RepID=Q9K6I8_BACHD Length = 219 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 58/183 (31%), Gaps = 12/183 (6%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V D ETTG +EV ++V+ E F V + E+ G E Sbjct: 27 FTVFDTETTGFAVGAGDRLIEVAAVHVEGLEVTDFTFQTYVNPERNIPAEIEELTGISED 86 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + + G +FD T++ ++ Y + Sbjct: 87 KVKNAPASLPAIESFF-RFVEQSGSAAWVGHYASFDVTVLKKELQRYQ--------FSLN 137 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L D L+ A++ G + RH A+GDA TA F L Sbjct: 138 VPLLFDTLDLIGYISPSKDMRD--LEVYAKQFGTYIYERHQALGDALTTAHLFCELLRHL 195 Query: 184 AAH 186 A Sbjct: 196 EAR 198 >UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysipelotrichaceae RepID=C8NZK8_ERYRH Length = 1433 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 51/184 (27%), Gaps = 17/184 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + DLETTGL +E G + ++ G + ++ P E+ Sbjct: 381 QTGSYVSFDLETTGLSNYYDHIIEFGGVLIENGRVV-KKMQTFIKAPVPVRPFIQELTNI 439 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L A E+ ++L + N FD + V Sbjct: 440 TDADLVNA----PSIEEAMDEILEFLGDHVLVAHNAQFDIDFIQETLRRIGKEPIQNAV- 494 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDM 178 + + D L ++A + + H A DA + F Sbjct: 495 ---------IDTLDLSRALFDNRRSYRLGSIARFMRIGYDEGVAHRADYDAEVLSLVFLE 545 Query: 179 LRHT 182 + Sbjct: 546 MLRL 549 >UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolbachia RepID=B3CMS2_WOLPP Length = 234 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 66/189 (34%), Gaps = 19/189 (10%) Query: 1 MAKQL--IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M +L IV+D ETTGLD +E+G + + H + + +I Sbjct: 1 MKSRLREIVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKI 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G E L + + E D++ + N FD + + + Sbjct: 61 HGISEEFLEDK----PLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLN------ 110 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFC 175 G + R+ D A K P L+A+ +R + + R H A+ DA A Sbjct: 111 -AGLISSDRVLDTLPLARKKFVGSPA---SLNALCKRFDISLEGRELHGALVDAQLLAKV 166 Query: 176 FDMLRHTAA 184 + L Sbjct: 167 YVELTGGLQ 175 >UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycoplasma RepID=B3PN84_MYCA5 Length = 1438 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 17/187 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V DLETTGL +E G ++ G ++ P EI Sbjct: 402 SQTYVVFDLETTGLSPRFNEIIEFGASIIENGIIKESHQF-FIKPTKPIPPSITEITKIT 460 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ D L+ N FD + + Y + Sbjct: 461 DNTVANGYSQ----EEGVRKIYDILKNRICVAHNAKFDINVCKENFLKYGL--------- 507 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDML 179 + ++ + + A + ID + L+ VA++ V H A DA A + ++ Sbjct: 508 -DNSKIIGIDSLAIARFLIDEAKSYRLEIVAKKFNVYYARNEAHRADYDANVLANVWILM 566 Query: 180 RHTAAAH 186 A Sbjct: 567 ILKLARE 573 >UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acidithiobacillus RepID=B5EMD9_ACIF5 Length = 248 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 18/182 (9%) Query: 1 MAKQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA + +V+D ETTG+D +E+G + + + ++DP+A+ I+G Sbjct: 1 MAVRQVVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQRSSDPEALRIHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + A ++L N FD + + V Sbjct: 61 LTDEFLQDQ----PGFAEVADAFLEFLGDAELIIHNAPFDLGFLNHELQLAGKAPLRQAV 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + A + + L+++ R V +R H A+ D A + Sbjct: 117 ----------MDTLADARRRHPGQKN-DLNSLCRRYSVENSHRELHGALLDTRILAEVYL 165 Query: 178 ML 179 + Sbjct: 166 AM 167 >UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromonadales RepID=A1ARI3_PELPD Length = 170 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 59/183 (32%), Gaps = 20/183 (10%) Query: 1 MAKQLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M L VVD+ET+GL +EV + + G+ + + + P A ++G Sbjct: 1 MESGLAVVDVETSGLSPRGGGRVIEVAAVLLREGKVV-GELESLLRVNCSIHPAAARVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + W ++ N FD + + +P + Sbjct: 60 IGWEMLRHA----PEPEDVWRRFLSFVGRRPLVAHNAPFDMGFIRHELALLGLPLAN--- 112 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVVNR-HSAIGDAAATAFCF 176 + + L+A+A L +P R H A+GDA A + Sbjct: 113 --------RSICTLRMARRRFPELASHRLEALARHLLGSIPEDCRLHRALGDARLAARVW 164 Query: 177 DML 179 + Sbjct: 165 LAM 167 >UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class) RepID=B9KXZ3_THERP Length = 982 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 20/185 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + +D+E TG+D + +EV + E L V+ + G Sbjct: 1 MPRIYVALDIEATGMDPERDEIIEVAAIKFREEEVLER-FETLVQPRRPVPLAVASLTGL 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R L R ++ ++R G +P +D +++ + + Sbjct: 60 TMRDLRRA----PSFQQIAPRLRQFVRNYPIVGQSPDYDLQMLSA----HGLELRNPVY- 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + L +A RLG+ V +H A+ D T F L Sbjct: 111 ----------DTFRLATILLPDLPAYSLAGIAARLGISVAQQHRAMADVETTMAVFLGLC 160 Query: 181 HTAAA 185 A Sbjct: 161 DLLRA 165 >UniRef50_D2BQ89 DNA polymerase III, epsilon chain n=4 Tax=Lactococcus lactis RepID=D2BQ89_LACLK Length = 277 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 58/183 (31%), Gaps = 15/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEING 59 M+++ +V D ETTG +++G + D + V+ + ++ G Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQLVKNQRSYVSTEITQLTG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E D+++G+ N FD + + + + Sbjct: 61 IKPADLLNQ----PTIEEILPEFLDFIKGHLLVAHNAPFDISFLYQA---------IIDC 107 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 A K + L+ + L + + H A+ D TA + L Sbjct: 108 AITDVEAFRVYDTLAESKKLL-TMSSYALENFKDLLEMNDLRSHDALNDCLITAKLYQYL 166 Query: 180 RHT 182 + Sbjct: 167 QKI 169 >UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus RepID=A4VTT3_STRSY Length = 837 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + VVDLE TG D A +++G++ V+ GE + + D + G Sbjct: 25 SNRYAVVDLEATGTGTD-AKIIQIGIVLVENGEIIDSYATD-INPYELLDDHIKNLTGIT 82 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L + + D + F N FD+ ++A Sbjct: 83 DQQLSQA----PDFGQVASTIYDMIGDAIFVAHNVKFDANLLAEALFFEGYELLTP---- 134 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + +L E L +AE L + + H+AI DA ATA ++ Sbjct: 135 -------RVDTVELSQLFFPTFEKYSLGNLAEHLELGLDQAHTAISDAMATARLLIKIQE 187 Query: 182 T 182 Sbjct: 188 K 188 >UniRef50_C6IVA0 DNA polymerase III n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVA0_9BACL Length = 247 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 52/181 (28%), Gaps = 14/181 (7%) Query: 6 IVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V DLETTG + + G + V+ V + + + +E+ G Sbjct: 64 AVFDLETTGFHYHYGDEILSFGAIKVEGERITDEVYYSLAKPACQIPERIIELTGITPEM 123 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 A E ++ A D + T Sbjct: 124 AQSA----PSLLEALREFMAFVDDRVLVAHGSAHDKAFLDVALWK--------TTKAHLG 171 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 HR+ D A KL D LD +PV RH A+ D+ TA + L Sbjct: 172 HRVLDTMMIAR-KLEPDRRISGSLDEWLAVYEIPVTKRHHALEDSKMTAQLWTALIQRLK 230 Query: 185 A 185 Sbjct: 231 E 231 >UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ART4_RUBXD Length = 560 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 46/163 (28%), Gaps = 18/163 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V DLETTG E+G L + G + V +P + G Sbjct: 30 EAPYVVFDLETTGSSAREGGITELGALKLVRGRVVDR-FSTLVNPGRPIEPFVARLTGIT 88 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++ G+ N FD + +A R +P Sbjct: 89 DEMVSGA----PPAREVIPRFEEFAEGSVLVAHNAGFDCSFLAAARGGRGLPNPV----- 139 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 L +L + L A+ GV H Sbjct: 140 --------LDTLRLARLLVPGLRRYRLSALVSHFGVRQAPNHR 174 >UniRef50_C8SCL6 DNA polymerase III, epsilon subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8SCL6_FERPL Length = 200 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 12/184 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ VVD+ETTGL+ + + ++ +D + L+ + + + +++ +G Sbjct: 3 EEKFAVVDVETTGLNVKKDEIISIAIIPMDGLKILFSEAYYRILKPRRFKIDSVKYHGIT 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + E+ + L G + D + + + F V Sbjct: 63 PRMVEEA----PTFCEVKEEILEKLNERIIVGYSINLDIEFLKKSFKECEVVFECKYVDI 118 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LR 180 +L G+L D + L+ +A++ GV V RHSA+ DA TA F M L Sbjct: 119 ADVEKLV-------GRLFGDYMKDVTLEDLAKKYGVDVAYRHSALSDAYITAQIFQMQLL 171 Query: 181 HTAA 184 Sbjct: 172 RLLK 175 >UniRef50_Q315G7 DNA polymerase III, epsilon subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q315G7_DESDG Length = 239 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 6/184 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 + V D+E TGLD + V +G + + + H V + A I+ Sbjct: 40 EFAVTDMEMTGLDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQRSMARPATLIHRITP 99 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTVGR 121 L A DW G + D + R + + V Sbjct: 100 AQLQH----SPALAGLLPGFVDWCGQALITGHHVGLDMGFLTRACRRHLGGAPATPCVDT 155 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + PT L ++ R G+P H A+ DA TA+ F L Sbjct: 156 MRLAQAWERERWERSFDPFQPTVSYTLADLSARYGLPQFRAHDALEDALQTAYLFLYLVR 215 Query: 182 TAAA 185 Sbjct: 216 KLKG 219 >UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6P2_9FIRM Length = 228 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 52/186 (27%), Gaps = 13/186 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEING 59 K+++ D ETTGLD + +E+ V + + K +E+ Sbjct: 3 QFKKIVFFDTETTGLDPEKDQIIELAAALVTENGIELKIDAFCKLPEGEKIPEKIVELTH 62 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + + ++ + + N FD + M V Sbjct: 63 ITDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGM------V 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFD 177 + R D + L E G+ V N H AI D A Sbjct: 117 PKAPKLRALDSLTVYKDRAAYP----HKLANAIEHYGLADKVQNSHRAIDDVLALYEVTK 172 Query: 178 MLRHTA 183 + Sbjct: 173 AMSEER 178 >UniRef50_C2H7V1 Possible DNA polymerase III subunit epsilon n=5 Tax=Enterococcus faecium RepID=C2H7V1_ENTFC Length = 297 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 17/181 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYY 61 +V+D ETTGL + +++G + ++ E + + ++ + + +I G Sbjct: 124 DDYVVIDFETTGLSPLDSEILQIGAIKYESNEEIDR-IYQNIKPFRSNISKRITKITGLE 182 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ ++ T N FD + Q ++ Sbjct: 183 LEDV----VNMPTFEDFSPQLMSFISCYTLVAHNAPFDLKFLLHQLNENNIEL------- 231 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + R+ + + + T L + + L + N H A+ D T + ++H Sbjct: 232 --NQRIRVIDTLPLARRHF-ETPNHKLITLKDYLNLDN-NSHDALEDCLVTNKVYQYIKH 287 Query: 182 T 182 Sbjct: 288 E 288 >UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Deltaproteobacteria RepID=C7LWI5_DESBD Length = 244 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 6/184 (3%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 V+D E TGL V +G + V + + V + I+ Sbjct: 46 YTVLDTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRPSIPLPKTSTLIHRITPE 105 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMPFSPLTVGRV 122 + + A E+ ++ +G G + D + + R + P + + + Sbjct: 106 AIAQA----PPLAEVLPELIEFCKGTLIVGHHVGLDMSFLNRACRKNHGQPLANPCLDTM 161 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + + L +A +P H A+GDA TA+ F L Sbjct: 162 RMAMLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQTAYLFIYLAKK 221 Query: 183 AAAH 186 A + Sbjct: 222 IAGN 225 >UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma RepID=DPO3_UREPA Length = 1442 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 59/185 (31%), Gaps = 18/185 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ D+ETTGL + +E G + + + + ++ + + + Sbjct: 406 NATYVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFIKPIQQINENVTNLTNIS 465 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 + + A ++++ + N FD + ++ + + + Sbjct: 466 QEMVNNAI----DEKTALLKIKEIFDDHILVAHNGINFDINFINQRLLKWGLEPLKN--- 518 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV--VNRHSAIGDAAATAFCFDM 178 + + + L A+ ++ V + H A DA A F + Sbjct: 519 -------PSIDTLMISRAINP-FKSHRLGAICKKYEVDYNDESAHRADYDAIVLADVFKV 570 Query: 179 LRHTA 183 +++ Sbjct: 571 MKNNL 575 >UniRef50_Q0EZC1 Probable DNA polymerase III (Epsilon chain) protein (Fragment) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZC1_9PROT Length = 300 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 20/190 (10%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEING 59 +LI++D ETTGL + VE+G + V + L H + + + I+G Sbjct: 54 RLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPERNIPDEVVRIHG 113 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E D++ G T N FD + + + P Sbjct: 114 IDNAKVKDQ----PTFREIAQEFLDFIEGATLVIHNAPFDLGFIMNELRINNFP------ 163 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + H ++ D +A K P + LDA+ +R + +R H A+ D+ A + Sbjct: 164 -EIGHMQVIDTLVFAREK---HPHQRNNLDALCDRYNIERGHRELHGALLDSELLAEVYL 219 Query: 178 MLRHTAAAHL 187 + L Sbjct: 220 GMTGGRQFSL 229 >UniRef50_C0XS38 DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XS38_9CORY Length = 472 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 + D+ET + ++GL+ V G + V + DP + I+G Sbjct: 121 DFVGFDVET--ANPAWGSICQIGLVRVIDGREVERVTWLCTPPPGLDEFDPSNVAIHGIS 178 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A E+ +++ N FD+T + + Sbjct: 179 AETVEG----SPPAAQRIDELVEFVGELPVVAHNAQFDATALREACRAVGRDIPNIMFA- 233 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 A + + L +AE GV + H A DAAA A L Sbjct: 234 ---------CTLAQSRAAKLKVQNHRLPTLAEHFGVQLEKHHDAGEDAAACAGILVGLAR 284 Query: 182 TAA 184 A Sbjct: 285 DAG 287 >UniRef50_C5VD41 DNA polymerase III epsilon subunit n=2 Tax=Corynebacterium matruchotii RepID=C5VD41_9CORY Length = 444 Score = 136 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 58/177 (32%), Gaps = 18/177 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYYE 62 + VD+ET + D ++G++ V G + + D + I+G Sbjct: 101 FVGVDVET--ANADWGSICQIGVVRVTDGMQVDSHEWLCRPPAGIDHFDEGNIRIHGITP 158 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + EV ++ N FD T +R P Sbjct: 159 DMVTDA----PDFAAVFPEVVAYVADQVLVAHNAQFDLTAFSRACHATGTPVPHWKFA-- 212 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + AA + L VA+ LGV + N H A+ DA A A F L Sbjct: 213 --------CSLAASRAAKLGITSHRLPVVAQHLGVELDNHHDAVADARACAGIFVQL 261 >UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8I6_9BACT Length = 197 Score = 136 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 54/185 (29%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L++ DLETTG +++ + + G V E+ G + Sbjct: 2 NLVIFDLETTGFSPRWNDIIQIAAVRLVDGRISDETFSTYVSPRRPVPDHITELTGITDA 61 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRV 122 + T A+ + T N FD +A + +P P+ Sbjct: 62 DVADAPETSDALR-AFARFVGDVGPTTLVAHNGHRFDMRFIAESCTLHGLPMRPIRF--- 117 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV----VNRHSAIGDAAATAFCFDM 178 + + K L LD + ERLG+ RH A D A Sbjct: 118 -------IDSIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARADVHLLANAVRR 170 Query: 179 LRHTA 183 + Sbjct: 171 MIQNL 175 >UniRef50_Q3SKJ9 DNA polymerase III, epsilon subunit n=4 Tax=Proteobacteria RepID=Q3SKJ9_THIDA Length = 470 Score = 136 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 18/185 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++L VDLETTG + E+ V V A ++ G Sbjct: 7 PQRLAFVDLETTGANAARDRVTEI--GVVVVDGDRVETWSTLVNPERAIPQFIQQLTGIS 64 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A E+ + L G F N FD + + F Sbjct: 65 NEMVADA----PTFARVADELAERLDGRLFIAHNARFDYGFLKHEYQRLGRRF------- 113 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLR 180 R L + LD++ R G+ RH A+ DA + L+ Sbjct: 114 ----RADVLCTVRLSRRLFPEHYRHNLDSLIARHGLATEGDRHRALADADLIWQFWRTLQ 169 Query: 181 HTAAA 185 A Sbjct: 170 REHEA 174 >UniRef50_UPI0001B583F7 DNA polymerase III n=2 Tax=Streptomyces RepID=UPI0001B583F7 Length = 612 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 57/190 (30%), Gaps = 19/190 (10%) Query: 1 MAK---QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 MA +VD+ET+GL + V ++ + V+ P +++ Sbjct: 13 MADYAHDWALVDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDPGCDPGP--VDV 70 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G L G + L+ N FD +A + + Sbjct: 71 HGLTRERLSGA----PAFGQIAGRLGAMLQDRVLVAHNAQFDYDFLAHEFARARLYLPVT 126 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L A + PT L ++A GVP H A+ D A F Sbjct: 127 ----------RRLCTLALNRQVDPPTRDMKLGSLAAHYGVPRTRAHDALDDTRVLAGIFL 176 Query: 178 MLRHTAAAHL 187 AA L Sbjct: 177 RATLREAARL 186 >UniRef50_A4CKG8 DNA polymerase III, epsilon subunit n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKG8_9FLAO Length = 222 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 8/183 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D ETTG + +G L V G + D ++ I+G Sbjct: 33 DFVVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFVKQERFDRASVPIHGI--- 89 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A E+ D+ + G + +FD ++ + + Sbjct: 90 -LRTGSSERVTEREALAELLDFTGQSPVVGHHISFDQAMIQAACQRSGLGPLRNPLIDTG 148 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L LD +A++ + +RH+A+GDA TA F + Sbjct: 149 LLYGHTLIKSPLLIKKDH----YTLDELADKFDISCKDRHTALGDAYITAIAFLNILELL 204 Query: 184 AAH 186 A Sbjct: 205 RAK 207 >UniRef50_A8LH88 Exonuclease RNase T and DNA polymerase III n=2 Tax=Actinomycetales RepID=A8LH88_FRASN Length = 389 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 54/182 (29%), Gaps = 16/182 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + VVD+ETTGL + V ++ ++ ++ P + I+G Sbjct: 75 RPYAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTLLDPGCDPGP--VHIHGLTR 132 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A EV L G N AFD ++A + + Sbjct: 133 QRLAG----SPTFAAVADEVAGLLAGRVLVAHNAAFDWRMLAGEAMRIGTTIPVEW---- 184 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L L ++A GV H A DA A + Sbjct: 185 ------RLCTLTLASRLGLELPSLRLASLAAYWGVVQRRAHDAQDDAEVLAALLPRILQR 238 Query: 183 AA 184 AA Sbjct: 239 AA 240 >UniRef50_B4AHF2 DNA polymerase III PolC-type (PolIII) n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AHF2_BACPU Length = 240 Score = 135 bits (340), Expect = 8e-31, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 28/188 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTG-------ESLYFVPHITVEQLAAADPKA 54 + +V+DLETTGLD+ +E+G + + G E F + +E+ Sbjct: 3 PQTYVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHTMVALEEGRDLPEFI 62 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 + G E L + A E+Q+++ N FD + ++ + Sbjct: 63 TNLTGITEEDLEDA----PEEWDALDELQNFIGDAIVVAQNAPFDLSFIS----RGDIEP 114 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 A + L V +R+G+ + H A+ D AT Sbjct: 115 ERFY------------CTRAMARFVEPEL-SASLKDVTKRIGISLDGHHRALNDVEATIE 161 Query: 175 CFDMLRHT 182 F Sbjct: 162 VFRRYLPR 169 >UniRef50_Q15SW9 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15SW9_PSEA6 Length = 251 Score = 135 bits (340), Expect = 8e-31, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 56/183 (30%), Gaps = 8/183 (4%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGY 60 L+ +D ETTGL+ T V +GL+ + H ++ K++ I+G Sbjct: 57 ETPLVALDFETTGLNPKTDSIVSIGLVAMTVKRIRCQEAQHWIIKPDTELKTKSVVIHGI 116 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPL 117 + E+ L+G + + + Y + F + Sbjct: 117 THSDVADA----PSFNRVLDELLQHLQGKVVVAHHKDIEVRFLNSALKHYIGEEIVFPCI 172 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L T L R +P +H+A+ DA A A Sbjct: 173 DTMALEARFSRTIKRTFLRSLLGQKTPSIRLTDCRSRYRLPYYRQHNALTDALACAELLQ 232 Query: 178 MLR 180 Sbjct: 233 AQV 235 >UniRef50_D0L0M1 DNA polymerase III, epsilon subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0M1_HALNC Length = 481 Score = 135 bits (340), Expect = 8e-31, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 16/172 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + L +D+ETTG + E+G++ + + A + + G Sbjct: 19 QPLACLDIETTGSHTERDRITEIGIVTLHPDG-TQSNWSCLIHPGCAIPARITTLTGITN 77 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + + L + N FD + + + F+P Sbjct: 78 EMVADQ----PVFAHRAQALLERLENHIVIAHNARFDLGFLKQAFRREGIRFNPSV---- 129 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 L + + LD+V +R+G+ RH A+GDAA A Sbjct: 130 -------LCSVKLSRQMFPAERRHNLDSVMQRMGLSCAARHRALGDAAVVAD 174 >UniRef50_B1I645 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I645_DESAP Length = 247 Score = 135 bits (340), Expect = 9e-31, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 60/176 (34%), Gaps = 22/176 (12%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYY 61 + +V+D ETTG + + +G + V G V H V + P + G Sbjct: 54 RFVVLDTETTGFEPAGGDEVIALGAVVVKNGRPRPEQVFHRLVNPGRSIPPLVTALTGIS 113 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA---RQRVTYSMPFSPLT 118 + + E ++L + AG + FD + R+ ++ L Sbjct: 114 DEAVAGE----DDLVAVLPCFLEFLGNDCLAGHHLGFDLEFLNLRLREFSGAAIRNPALD 169 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + + LDA+ G+ RH+A+GDA TA Sbjct: 170 TAVI-------------ARALYPALKYFSLDAMLSFHGIEPAGRHTALGDAWLTAR 212 >UniRef50_A9HX18 Putative exonuclease n=1 Tax=Bordetella petrii DSM 12804 RepID=A9HX18_BORPD Length = 177 Score = 135 bits (340), Expect = 9e-31, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V DLETTGL + +E ++V ++ V P + G + Sbjct: 7 PFAVADLETTGLSTASCEILEFAAVHVGPDGAIEREFSQVVRTRGTVPPFITRLTGITQA 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + A A+ +L N +FD + +PF+ Sbjct: 67 EVDGHGI---PVAEAFSAFLAFLADAPVFFHNASFDCRFLQAAAEHTGLPFANA------ 117 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L +A +G H A+ D +T R Sbjct: 118 -----THCTLQLARQAWPELPSHKLQVLARHVG-AADPTHRALADVRSTVAVALAARRKL 171 Query: 184 AA 185 A Sbjct: 172 AG 173 >UniRef50_B8EEZ7 DNA polymerase III, epsilon subunit n=2 Tax=Shewanella RepID=B8EEZ7_SHEB2 Length = 300 Score = 135 bits (340), Expect = 9e-31, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 16/173 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I +D ETTGL D +E+ + D + + V + K I G Sbjct: 19 FIALDAETTGLSADVDKIIEIAAIKFDLLSNDHPVFEALINPNVKVSRKITSITGITNAM 78 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + +++ ++ N FD + + + + + Sbjct: 79 LADQ----ETFTDIAQDLKQFIGDLPIVAYNAKFDKGFLDTEFANVGI---------ILN 125 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + A N+ L VAE +P+ H A DA A F Sbjct: 126 NHYHCALNLAKAAFNLP---NYKLATVAEHCSIPLNEAHRAKADAVAAGRVFM 175 >UniRef50_D2RB05 CRISPR-associated endoribonuclease Cas2 n=2 Tax=Gardnerella vaginalis RepID=D2RB05_GARVA Length = 359 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 17/190 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV--------EQLAAADPKA 54 K +V+D ETTGL+ +E+G + G+ F I + + + Sbjct: 176 KNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKIEEFQKLININCDSVSNFNKNNFIPNEI 235 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 +E+ G L + + +A E +++ G N FD + + + F Sbjct: 236 IELTGITSNMLESYGV---RLDLALKEFINFVERLPVLGYNVQFDMSFLNSALSSLDERF 292 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + +++ D++ + + + L V + H A+ DA TA Sbjct: 293 DH----SLSINKIFDISRFVKKEKKF--LKNYQLKTVLHEYNIAESVPHRALLDARLTAH 346 Query: 175 CFDMLRHTAA 184 L Sbjct: 347 LVFNLTELLK 356 >UniRef50_Q2SSE0 DNA polymerase III, alpha subunit, Gram-positive type n=4 Tax=Mollicutes RepID=Q2SSE0_MYCCT Length = 1479 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ DLETTGL + +E G + + I ++ + ++ E Sbjct: 431 KMVFFDLETTGLSPELDEIIEFGAIEYNFKTGERKKIDILIKPKSKLKDFTKKLTNINEE 490 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + VA+ E+ ++ N FD T ++ T+ Sbjct: 491 MLENK----PGIEVAFKEINQVIKDAILVAHNANFDYTFLSHWSEKLGYGKLENTI---- 542 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRH 181 + ++ + L ++A+R+ + H DA A ++ + Sbjct: 543 ------IDTLTISRIIYPELKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLD 596 Query: 182 TAAAH 186 Sbjct: 597 DTRKK 601 >UniRef50_Q03C57 3'-5' exonuclease and CRISPR-associated protein cas2 n=3 Tax=Lactobacillus RepID=Q03C57_LACC3 Length = 301 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 14/179 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D+ETTGLD + + +G + + V ++ G Sbjct: 129 PFVALDIETTGLDAERDAIIAIGAVK-GPSVNETEKFTTLVNPRRPLPSTVAKLTGLSAE 187 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ + A ++D+ G N FD ++ + + Sbjct: 188 ELVANGIS---LSEAVQALRDFTGSLPLVGYNLRFDMGFLSAAGRETGLTSFGNQTFDL- 243 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 K + + L V + H A+ DA AT D L Sbjct: 244 ---------LPLVKKSSRFLDNYKLSTVLAHYQIDNEQPHHALSDATATMALADKLIKK 293 >UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rickettsia RepID=DPO3E_RICBR Length = 229 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 14/185 (7%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D ETTGLD VE+G + + H + +A I+G Sbjct: 7 IILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPFEAYRIHGISGEF 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + +++ + N FD + + + + Sbjct: 67 LKDK----PLFHTIADDFLEFIADSKLVIHNAPFDVKFLNHELSLLK----RAEIKLLEL 118 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 D A P LDA+ +R V R H A+ DAA A + L Sbjct: 119 EHAIDTLVMARSMF---PGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTGG 175 Query: 183 AAAHL 187 + Sbjct: 176 RQSAF 180 >UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=Q65S83_MANSM Length = 260 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 67/179 (37%), Gaps = 19/179 (10%) Query: 8 VDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +D ETTG++ Y+ +E+G + + H+ ++ DP+A++++G + Sbjct: 13 LDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPDRLVDPEAIKVHGITD 72 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + E D+++G N FD + + + + + V Sbjct: 73 EMLEDK----PVFTEVAQEFIDFIKGAELLIHNAPFDVGFMDYEFRKHHIDVKTADICSV 128 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + + LDA+ +RLG+ R H A+ DA + ++ Sbjct: 129 -------TDTLQLARQMYPG-KRNSLDALCDRLGIDNTKRVLHGALLDAEILGDVYLVM 179 >UniRef50_D1NTJ1 DNA polymerase III PolC-type n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NTJ1_9BIFI Length = 214 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 20/200 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M I +D+ETTGL E+G + V G + + + + G Sbjct: 14 MPLDYISLDIETTGLAPRQETITEIGAVRVRDGRIADR-FSMLINPGKHIPSRITALTGI 72 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A DW+ G+ G N FD + + ++ + + Sbjct: 73 SDAMVEDA----PMIDEAIPAFVDWVDGDRLIGHNIRFDLSFLLKEAMLLDAALATPFNA 128 Query: 121 RVWHHRLADL--------------AAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAI 166 + + + +E L + R GV H A+ Sbjct: 129 KAVNPAAMTTTAEITRAMLGPDPLDTMMIDRWLFP-SERHRLSDLIVRYGVADTEAHRAL 187 Query: 167 GDAAATAFCFDMLRHTAAAH 186 DA T CF+ R AA Sbjct: 188 SDATQTYQCFEWQRRYVAAS 207 >UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K987_THASP Length = 482 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 54/185 (29%), Gaps = 20/185 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +L +D+E+TG E+ +L V+ GE + V P E+ G Sbjct: 3 LPSRLAFIDVESTGAHPVRDRITEIAILRVEDGEVVAR-WESLVAPGQPIPPLIEEVTGI 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + V V L G F + FD + F Sbjct: 62 SDAMVAEA----PAFEVLADTVAALLEGCVFVAHSARFDYGFIRNAFTRIGREFEAPV-- 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + GLDA+ ER G+ RH A+GD Sbjct: 116 ---------LCTVKLSRALYPEHHRHGLDALIERHGLVCAARHRAMGDV----EVLWQFV 162 Query: 181 HTAAA 185 A Sbjct: 163 RGLEA 167 >UniRef50_Q1V197 DNA polymerase III n=3 Tax=Candidatus Pelagibacter RepID=Q1V197_PELUB Length = 223 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGL D VE+G + ++ H + KA+E++GY + Sbjct: 4 VILDTETTGLSVRDGHRIVEIGCIELENLIPTKNRFHCYLNPERKVSEKALEVHGYTDEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L T ++ E ++ N FD + + + Sbjct: 64 L----STHKKFGDIVDEFLVFIENKRLVIHNAEFDLSHLNNELSLLGKEKLNSENV---- 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + A + + LDA+ +R + R H+A+ D A + L Sbjct: 116 -----VDTLALARDKFPGSP-ISLDALCKRYRIDNSKRTQHTALIDCDLLAKVYINLLDQ 169 Query: 183 AAAHL 187 L Sbjct: 170 KEPTL 174 >UniRef50_A4X9Y0 DNA polymerase III, epsilon subunit n=6 Tax=Actinomycetales RepID=A4X9Y0_SALTO Length = 607 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 53/184 (28%), Gaps = 14/184 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVDLETTG D E+G + V GE V V P + G + Sbjct: 53 TFVVVDLETTGGTPDGGGITEIGAVKVRGGE-QLGVLATLVNPGTPVPPFVTVLTGITQS 111 Query: 64 GLYREALTEQQTAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L L ++ N +D + + + Sbjct: 112 ML----LPAPPITEVLPSFLEFLPPDAVLVAHNAPYDVGFLKAACAAHGYRWPS------ 161 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R+ D AA A L D L +A H A+ DA AT L Sbjct: 162 --PRVLDTAALARRVLTRDEVPNRRLGTLAAYFRTATRPTHRALDDALATVDVLHGLISR 219 Query: 183 AAAH 186 H Sbjct: 220 LGGH 223 >UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RD59_9FIRM Length = 1447 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 55/183 (30%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V DLETTGL +E G V + + ++ +E+ G E Sbjct: 398 TYCVFDLETTGLSSRFDHIIEFGGQIVKDRTCI-KSLQLFIKPPVPIPAHIVELTGISEE 456 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A ++ D++ + N FD + + V + Sbjct: 457 HVRNAK----SFAECADQILDFIGDSILVAHNADFDYNFLNSELVRIGRKP-------LD 505 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRH 181 + + L ++ + L +A G+ H A DA A + + + Sbjct: 506 NPVIDTLDL----ARSMQDRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLANTYMNMLN 561 Query: 182 TAA 184 Sbjct: 562 DLK 564 >UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG63_THET1 Length = 960 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 20/175 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +DLE TG D + +++G + T + V + + G Sbjct: 4 ERIFVALDLEMTGHDPEQDEIIQIGAVKF-TQTRVLGRWGTLVRPKVKLPFRIARLTGIN 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + +++ ++ + G + D + +A+Q + + Sbjct: 63 PNDLNKA----PVFDAVKDKLRSFVGDHPIVGHSIGNDLSFLAKQ----GLALDNPS--- 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L + L + L VA LGV V N H A+ DA T F Sbjct: 112 --------LDTWELAMLLMPSLNAYSLQGVASALGVSVDNHHDALADAEITRQVF 158 >UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XHM4_9FLAO Length = 221 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 7/179 (3%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V D ETTG + + +G L + + + + +A+ I+G Sbjct: 33 EARFVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQEVFNEEAVAIHGIL 92 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++E A +++ G + FD I+ P Sbjct: 93 RENRKYKKVSE---EEAVKAFLEFIGDAILVGHHVGFDIGIINYALKRLGAPKLKNKFTD 149 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + DP ++ LD + E L + +RH A+GDA TA F + Sbjct: 150 TGVLYKRTVHLV----NITDPNKVYTLDDLCEELNIAKTDRHKAMGDAYITALAFLKVM 204 >UniRef50_A9BFB1 DNA polymerase III, epsilon subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BFB1_PETMO Length = 187 Score = 133 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 56/180 (31%), Gaps = 17/180 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 + +D ETTGL+ + +E+ + + + + H V + + + Sbjct: 8 FLALDFETTGLNPELGDRIIEIAAIPIYDKKINFKYAFHTLVNPNIFIPGEVSKFHKLNN 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + ++++ + N D + M + Sbjct: 68 QDISNA----PSLSEVFPRFKEYIDDSIIVSHNVKMDLRFLDIAAKESGM-------FSI 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ + L L+ ++++ + + H A DA +TA F Sbjct: 117 DNYYIDTLEISKYYFDKGP----YNLEFLSKKFNLGIKQFHRAWDDALSTAKLFQKYIKL 172 >UniRef50_A6GRM1 DNA polymerase III subunit epsilon n=1 Tax=Limnobacter sp. MED105 RepID=A6GRM1_9BURK Length = 248 Score = 133 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 56/186 (30%), Gaps = 9/186 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYE 62 ++ +D ETTGL+ + + +G + + + + + ++ A + I+G Sbjct: 54 PMLAIDFETTGLNPEYDDIISIGAVPLMSNRIMLGQSRYWILKPAAKLRSDTIPIHGITH 113 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLTV 119 + E+ + G A ++ + + F + Sbjct: 114 SDIANA----PDLIDVLPELLKMMSGKLAVAHCAAIETRFLDTALQYRVGEGIVFPVIDT 169 Query: 120 GRVWHHRLADLAA-YAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H + L + +R +P H+A+ DA A A Sbjct: 170 MGIERHFSDHQNSGLFERMFRKSQGASLRLPDIRKRYKLPFYRPHNALVDALACAELLQA 229 Query: 179 LRHTAA 184 A Sbjct: 230 QIQHHA 235 >UniRef50_B3RU88 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RU88_TRIAD Length = 289 Score = 133 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 18/184 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ETTGL +E+G L + + + +A E++ + Sbjct: 16 VVLDTETTGLSVRTGHRIIEIGCLELIDHQPTSRTFQCYINPKFPVSERAFEVHHLSNKF 75 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + +D+++ +T N FD + + ++P + Sbjct: 76 LEG----FPTFDGIVQDFRDFIQEDTLIIHNGHFDIKFINNEFQKLNIP-------EISF 124 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR---HSAIGDAAATAFCFDMLRH 181 R+ D + LD++ +R + +R H A+ D + L Sbjct: 125 ERVIDTMLM--ARKLYPRQPA-SLDSLCDRFNIDKSSRSLGHGALTDVKLLQLVYAKLLK 181 Query: 182 TAAA 185 A Sbjct: 182 DQDA 185 >UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYA8_9GAMM Length = 595 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 16/177 (9%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTG + + +EVG++ + H+ + + + ++G + Sbjct: 368 LILDTETTGFEAQNGDRIIEVGIVEMINRRFTGEKLHVYINPKIEMGEEVIRVHGIHNAF 427 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + D+L+G N FD + + + +P + Sbjct: 428 LNDM----PVFEQVGEAIYDFLQGAELIAHNAGFDMSFLQAEFARLGLP--------DIN 475 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + + A K LDA+ +RL V +R H A+ DA A + + Sbjct: 476 QTVTVTDSLAIAKRMFAGQRN-TLDALVKRLNVGKQDRTFHGALLDAEILAEVYLAM 531 >UniRef50_C0ECE2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECE2_9CLOT Length = 865 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 14/186 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K ++V D+E+TG D + +++ + +D + + ++ ++ + + Sbjct: 497 KNVVVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRSFEQLLHPSKPV-GQSEAVHHFSD 555 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L E ++RG G N FD TI+A + +P + Sbjct: 556 ALLAERGGEPP---QVLAEFCSFVRGAVVVGHNVGFDLTILASELSRLGLPPAEYEEYY- 611 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR-H 181 + L+ +++ L V + H A+ D AT L H Sbjct: 612 --------DTLDLARRFYPDLPNHKLETLSKLLDTEVKSSHDAMDDILATKDVLLHLTAH 663 Query: 182 TAAAHL 187 L Sbjct: 664 KLLPTL 669 >UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flavobacteria RepID=A5FH18_FLAJ1 Length = 209 Score = 133 bits (335), Expect = 4e-30, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 8/185 (4%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V+D ETTG DY+ + +G L + G D +I+G Sbjct: 22 ETRFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKSTAQIHGI- 80 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + A + D+L + + FD T++ + +P Sbjct: 81 ---LKDLLVKRPTELEALQQFLDFLGDSIIIAHHTVFDVTMINKALERNGLPQLTNKTLD 137 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L + + LD +A++ + +RH+A+GDA TA F + Sbjct: 138 TAYLYKKTLIQS----HLFERKDHYTLDDLADKFDISKKDRHTALGDAYITAIAFLKIVK 193 Query: 182 TAAAH 186 Sbjct: 194 KLREK 198 >UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8CUQ0_OCEIH Length = 195 Score = 132 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 18/175 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ET + VG++ ++ E + + + LA+ + I+G E Sbjct: 3 KFAAIDFET--ANEKRNSACSVGVVIMNDTEIID-EFYTLINPLASFRSGNVFIHGITEE 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A W + +L N +FD +++ + Y +P T Sbjct: 60 QVQEA----PTFAELWPTLSAYLEDTILIAHNASFDMSVLRQSLNKYDIPCPNYTS---- 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L +L E L VA G+ + N H A+ DA A+A F Sbjct: 112 ------LCTVKISRLIWPQLENHKLHTVANHHGIAL-NHHHAMDDARASAKIFLA 159 >UniRef50_C4XFQ7 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFQ7_MYCFE Length = 1467 Score = 132 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 15/186 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ + D+ETTGL A+ +E G L + + ++ P + G Sbjct: 430 QEYVSFDIETTGLCPRFAVIIEYGSLPIHSNMKYGRKTQFFIKCQEPIKPFTENLTGITN 489 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + L + A ++ + L G N FD + + + F +TV Sbjct: 490 AMIEKSGL---ELKEALQKIYNDLNGKIALAHNARFDFNFLKEKFRQAKIEFPNVTV--- 543 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLR 180 + ++ + L+ VA R+GV H DA A + L Sbjct: 544 -------IDTLIVSRIVFPQNKKHKLEDVATRVGVEYDPTVAHRGDYDAKVLAEVWVALM 596 Query: 181 HTAAAH 186 Sbjct: 597 DELGKK 602 >UniRef50_UPI0001AEDE41 DNA polymerase III n=2 Tax=Streptomyces RepID=UPI0001AEDE41 Length = 641 Score = 132 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 54/182 (29%), Gaps = 16/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VD+ET+GL + V ++ + ++ P +E++G Sbjct: 19 DWALVDVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTLLDPGCDPGP--VEVHGLTAE 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L G + L+ N FD +A + R+W Sbjct: 77 RLRGA----PTFDQVAGRIGAMLQDRVLVAHNAQFDYDFLAHEFARA----------RMW 122 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L A + PT+ L +A VP H A+ D A A Sbjct: 123 LPVSQRLCTLALNRQVDPPTDDMKLGTLATHYDVPQQRAHDALDDTRVLAGILRASLREA 182 Query: 184 AA 185 A Sbjct: 183 AR 184 >UniRef50_Q03AH5 DNA polymerase III, epsilon subunit related 3'-5' exonuclease n=54 Tax=Lactobacillales RepID=Q03AH5_LACC3 Length = 180 Score = 132 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 56/176 (31%), Gaps = 18/176 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D ET + A + L+ V + + + + D + + I+G Sbjct: 2 DFIAMDFET--ANRKRASACSLALVVVQQNKVVD-SFYTLINPQMQFDAQNIHIHGITPE 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + W +Q + N FD +++ Y + Sbjct: 59 MVQDQ----PTFDQVWPHIQMFYTPGRIVTAHNAPFDVSVMRLTLDRYGIAAP------- 107 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R + + + LD V+ L +P+ + H+A+ D+ A A Sbjct: 108 ---RYQVIDTVKTSRQFLPKLPNHRLDTVSAALHIPLEHHHNALADSYACARILIA 160 >UniRef50_A4T616 DNA polymerase III, epsilon subunit n=11 Tax=Mycobacterium RepID=A4T616_MYCGI Length = 345 Score = 132 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 58/173 (33%), Gaps = 16/173 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+G A V V L + ++ + ++ DP ++G Sbjct: 32 WAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPG--VDPGPTHVHGLTAEM 89 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + G++ + LRG T N FD + ++ + TV Sbjct: 90 LEGQ----PTFGDVVGDLCEVLRGRTLVAHNVGFDYSFLSAEAELVGAELPIDTV----- 140 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + E L+ +A GV + H A+ DA A Sbjct: 141 -----MCTVELARRLDLGLENLRLETLAAHWGVTQMRPHDALDDAMVLAQILK 188 >UniRef50_C0QPN1 DNA polymerase III subunit epsilon n=1 Tax=Persephonella marina EX-H1 RepID=C0QPN1_PERMH Length = 206 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 70/183 (38%), Gaps = 14/183 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 DLETTGLD + + +G + + + + + + + I+ Sbjct: 34 TFCSFDLETTGLDVEKDEIISIGAVKIKEMKIDLSTSFYRIVKPERIPEKENILIHSITA 93 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPLTV 119 + + + + ++++G G +FD +++++ + + + V Sbjct: 94 SEMKKG----EDIRDVLPKFLEYIKGTVLIGYFVSFDISMLSKYTQKFYGFPILNPYIDV 149 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +++ + + + + LD +AE L +PV RH+A+ D+ TA F L Sbjct: 150 SQLY------IKKKVKSYTPYEKIKEKSLDQIAEELNIPVRKRHNALYDSITTALIFLSL 203 Query: 180 RHT 182 Sbjct: 204 MKR 206 >UniRef50_C9XLH5 Putative DNA polymerase III, epsilon chain n=5 Tax=Clostridium RepID=C9XLH5_CLODC Length = 168 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 14/180 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ +VVDLETTGLD + + E + ++ E+ Sbjct: 2 KEYVVVDLETTGLDPYKGCEIIEIGITEIKNEQIVKNYSRLIKPKGIISSFITELTHISN 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E + + + ++ T N FD + + Sbjct: 62 EMVENE----EPLELVLPRFRKYIGDRTIIAHNAKFDLKFLNYYLRMLDLEP-------- 109 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ + + K + + L+ + +N H A D ATA F ++ Sbjct: 110 INNYICTVELLKKCKS--YKGKNKKLETACAYYNIENINAHRADSDTLATAKLFLKIKDE 167 >UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Streptococcus pneumoniae SP23-BS72 RepID=A5MUE3_STRPN Length = 308 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 18/186 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M I +D+ET + +GL+ G+ + + + + ++I+ Sbjct: 1 MTYSFIALDVET--ANSFRGSLCSIGLVKFIDGQEVD-SFYTLINPEEKFSSRNIKIHAI 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + E+ +++ N FD+ + + Y +PF Sbjct: 58 KPEDVIGA----PTFPEVQKEIINFIDNLPIVAHNARFDAYALQDVYLKYEIPFDN---- 109 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +Y K+ + L +AE + + H+A+ DA A + Sbjct: 110 ------IQYFCSYQVCKIILTDLPNHKLHTLAEHFKISLD-HHNALSDARACGLILLEIL 162 Query: 181 HTAAAH 186 + Sbjct: 163 KLSKQT 168 >UniRef50_Q8EUK5 DNA polymerase III subunit alpha n=1 Tax=Mycoplasma penetrans RepID=Q8EUK5_MYCPE Length = 1458 Score = 132 bits (332), Expect = 6e-30, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 49/181 (27%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D+ETTGL +E G + G + + + K I Sbjct: 420 TYVIFDIETTGLSPYYDKIIEFGAIKYHKGVQVE-SIQMFINPEEKISDKIFAITKISNE 478 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A +++D++ + N FD + + M + Sbjct: 479 DVKDALK----IKEALVKIKDFIGDSVLIAHNGIKFDLPFLNCKLEENKMDIIKNPL--- 531 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCFDMLR 180 + + + L +A + + H A DA + + Sbjct: 532 -------IDTLQISRAINEQIHGHSLGVIARKYKIDYDETQAHRADKDAEYLLNIWKRML 584 Query: 181 H 181 Sbjct: 585 E 585 >UniRef50_B9JXT6 DNA polymerase III epsilon subunit-like 3-5 exonuclease n=8 Tax=Rhizobium/Agrobacterium group RepID=B9JXT6_AGRVS Length = 207 Score = 132 bits (332), Expect = 6e-30, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 17/185 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++I +D ET + + VGL V+ G+ + + + + I+G Sbjct: 5 LQPKIIAIDFET--ANEERGSACSVGLAFVENGQVVRVEERLIRPKTMRFSSFNIAIHGI 62 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + E D G N AFD ++ Y P+ L+ Sbjct: 63 RPDHVEDAG----EFPEVMDEFADDFSGAMVVAHNAAFDLSVWRASCDLYRQPYPSLSY- 117 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + L+ +A L + H+A DA+ A + Sbjct: 118 ---------VCSVKLAQKVWPQLPSHRLNVLAAHLQLSF-RHHNAAEDASVCAQAVIAMM 167 Query: 181 HTAAA 185 A Sbjct: 168 ERRGA 172 >UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=53 Tax=Staphylococcus RepID=DING_STAAB Length = 897 Score = 132 bits (332), Expect = 6e-30, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 15/181 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG D +++G+ V + + H + P + E Sbjct: 5 TYAVVDLETTGNQLDFDDIIQIGITFVRNIQIID-TYHSMIRTNLEIPPFIQALTSIEEN 63 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + D ++ F N FD + + ++ + P V Sbjct: 64 MLQQA----PYFNQVAQGIYDNMKDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKRV---- 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + K+ + L +AE G+ + N H A DAA TA + Sbjct: 116 ------IDTLEIFKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKF 169 Query: 184 A 184 Sbjct: 170 E 170 >UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseudomonas syringae group RepID=Q4ZNE2_PSEU2 Length = 204 Score = 132 bits (332), Expect = 6e-30, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 51/188 (27%), Gaps = 18/188 (9%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M +++ V+D ETTG+ E+ ++ ++ G + + + G Sbjct: 1 MLERIAVIDFETTGISPGHSCRATEIAVVIMEQGRIVER-FQSLMNAGVRIPAFIEGLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + T G+V D++ N +FD + Sbjct: 60 ISNNMIR----TAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRTREQSFA 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDM 178 + + + L + +P H A+ DA A Sbjct: 116 -----------CSLLLARRLMPGAPNHKLGTLTRYARLPDTGKAHRAMADAEMAANLTAH 164 Query: 179 LRHTAAAH 186 L + Sbjct: 165 LTNELRQT 172 >UniRef50_C5F3P4 DNA polymerase III n=1 Tax=Lactobacillus paracasei subsp. paracasei 8700:2 RepID=C5F3P4_LACPA Length = 309 Score = 132 bits (332), Expect = 7e-30, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 56/186 (30%), Gaps = 21/186 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 IV+D+ETTGL + +++ L V + + V+ + + I G Sbjct: 44 DYIVLDIETTGLSSVSDDIIQLSALKVKEDKVID-TFDSYVKPSTSIPENVVYITGITNS 102 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIV-ARQRVTYSMPFSPLTVGR 121 + + + + G G N FD + + Sbjct: 103 TVENA----PEIFEIMPKFVSFTEGMPLVGHNIIRFDIPFIVNNGFYYEDIEA------- 151 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D A K +P + L + E G+ H+A+ D T + LR Sbjct: 152 ------LDTWRLAKNKDFPEPLKNLKLPTLKEYFGISGS-SHNALDDCKTTITVYRHLRD 204 Query: 182 TAAAHL 187 + Sbjct: 205 NKLERI 210 >UniRef50_A1KUV1 DNA polymerase III, epsilon chain n=18 Tax=Neisseria RepID=A1KUV1_NEIMF Length = 253 Score = 132 bits (332), Expect = 7e-30, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 60/185 (32%), Gaps = 13/185 (7%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ I++D ETTGL D VE L + + H+ V +A ++G Sbjct: 10 MIQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHG 69 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + A ++ D+LRG N FD + + +P Sbjct: 70 LTIEVLEGK--NAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELG 127 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 V A + + LDA+ R V R H A+ D + Sbjct: 128 CTV-------TDTLAMAREMFPGQK-ASLDALCNRFSVDRSKRVLHGALIDCELLGEVYL 179 Query: 178 MLRHT 182 + Sbjct: 180 AMTRR 184 >UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q2F7_CATAD Length = 204 Score = 132 bits (332), Expect = 7e-30, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 16/172 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+G A +EV +++VD + + A ++G Sbjct: 12 YAVVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQGGV--GATRVHGITREM 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + E+ L N AFD+ + Q + + G Sbjct: 70 VE----PAPRFEDVGMELHGLLVDRVVVAHNLAFDAKFLVTQFARLGVHSPEIAGGA--- 122 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + L E +GV + + HSA+GDA ATA Sbjct: 123 ------CTLRTSQAMLPG-PSYKLLDCCEAVGVELTDAHSALGDALATARLL 167 >UniRef50_D2L4P4 DNA polymerase III, epsilon subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4P4_9DELT Length = 249 Score = 131 bits (331), Expect = 9e-30, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 57/189 (30%), Gaps = 10/189 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 + VD E TG D V +G + + L + V AA A I+ Sbjct: 48 DFVAVDTELTGFDPRRHALVSIGAVRLRGLSILPGEAFYTLVRPPAAVPRDATLIHRLTG 107 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPLTV 119 L A A D+L G + D + + + + Sbjct: 108 AALADA----PPVAEALAAFLDFLGPAVVVGHHVDLDMGFLNAAARRHMGGELAAPCIDT 163 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTEL--EGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 R+ A A G D E L A+ R G+P H A DA ATA+ F Sbjct: 164 LRLAMALEEKRLAVAGGAGGPDGFERVDYRLPALCRRYGLPGFAAHDARADALATAYLFL 223 Query: 178 MLRHTAAAH 186 L Sbjct: 224 YLARHCGRA 232 >UniRef50_A6WGD9 DNA polymerase III, epsilon subunit n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WGD9_KINRD Length = 224 Score = 131 bits (331), Expect = 9e-30, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 56/186 (30%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + V+D+ETTGL + V++ + +D ++ V+ P ++G Sbjct: 25 RYAVLDVETTGLRPETGDRVVQIAVTLLDARGTVERSWSSLVDPHRDPGP--THVHGITA 82 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L A V L G F N FD V+ + + Sbjct: 83 ERLAGA----PTFAQLAPTVAGLLDGRVFVAHNARFDWKFVSAEMRAAGVHLPVRQ---- 134 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD-MLRH 181 L + + P E L +AE GV + H A D L Sbjct: 135 ------RLCTWELAQRLDLPVENLKLATLAEHWGVRQLRPHDAEDDTRVLVEVLREELLD 188 Query: 182 TAAAHL 187 A L Sbjct: 189 AAGQRL 194 >UniRef50_B6IRC5 3'-5' exonuclease n=2 Tax=Alphaproteobacteria RepID=B6IRC5_RHOCS Length = 212 Score = 131 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 17/179 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 L+ +D ET + A +GL V+ G + ++ P + I+G Sbjct: 4 PPPLLAIDFET--ANEQRASACSIGLCRVENGRVVRTAEYLIRPPELRFTPFTIAIHGIR 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + W ++ L G N +FD +++ TY + Sbjct: 62 PEDVVDA----PEFPDIWDAMRPELEGAVLLAHNASFDMSVLRAMLGTYGLAVPDHGY-- 115 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L A + E L+ +A + G+ + H A DA A A Sbjct: 116 --------LCTLVAARRAWPDLEKHRLNHLARQFGIELE-HHRAGSDARACAAIALRAM 165 >UniRef50_Q6Q234 Putative uncharacterized protein n=1 Tax=uncultured soil bacterium RepID=Q6Q234_9BACT Length = 195 Score = 131 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 58/185 (31%), Gaps = 11/185 (5%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +V+D ETTGL T V++G+++ L + V I+G Sbjct: 22 MHGDFVVLDTETTGLGP-TDEVVQIGIIDSKGRTVL----NTMVRPTRPVPSVVTRIHGL 76 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + + + L G T N FD ++ + Y +P Sbjct: 77 TNEKLAEAS----PFSDLYVSLSSILAGVTVIAYNMDFDWRMLVQSAGLYGLPAFRTGDR 132 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + A K L +PVV H A+ DA T + Sbjct: 133 QCAMKAYAQGHGMFDLKRRTYAY--HKLGEACRHQKIPVVQAHDALSDARMTLALVRKMA 190 Query: 181 HTAAA 185 +A Sbjct: 191 EFHSA 195 >UniRef50_C4DV08 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DV08_9ACTO Length = 410 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 55/178 (30%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V D ETTG+ +E+ ++ D S+ + P+ I+G Sbjct: 2 YAVFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTLLNPDRDLGPQ--HIHGIK-- 57 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 R+ + + G++ L G T N FD ++ + + V Sbjct: 58 --ARQVIDAPKFGDIAGQLIQMLSGRTLVAHNLPFDLRFLSAEFERLGHQLTYNHHLGVC 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L + GV + HSA+ DA ATA + Sbjct: 116 TMNWSTT---------FLEGASRSLPECCKAAGVQLTGWHSALSDAEATAALLKHYIN 164 >UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria RepID=B0VKV7_ACIBS Length = 459 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 17/177 (9%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTG + D +EVG + + + HI + +++++G + Sbjct: 234 LILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGD-SVQVHGITDEF 292 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + A + ++L+G N FD + + +P Sbjct: 293 L----VDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEV--- 345 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 A K + LDA+ R +P +R H A+ DA + + + Sbjct: 346 -----TDTLALAKNKHPGQKN-SLDALVRRYEIPARDRTFHGALLDAEILSDVYLAM 396 >UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lactobacillus salivarius RepID=Q1WU39_LACS1 Length = 929 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 59/184 (32%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + VVDLETTG D ++ V + + + + + ++ G Sbjct: 4 ERIYAVVDLETTGPKQDGSDKIIQFSCDFVQSNKIV-NHFSTLINPGMPIPVEVKKLTGI 62 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + G + L+ TF N FD + ++ + P L + Sbjct: 63 KDKDVRYA----PYFDEVAGTIYAMLQNTTFVAHNVNFDYSFLSSELERAGYPELELPM- 117 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + ++ L +++ L + ++ H A D ATA L+ Sbjct: 118 ---------MDTVQLTQIIYPTLVSYRLIDISKYLQLSHIHPHKADSDTKATAELLINLK 168 Query: 181 HTAA 184 Sbjct: 169 KRIE 172 >UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BJL1_9LACT Length = 873 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 60/187 (32%), Gaps = 18/187 (9%) Query: 1 MAKQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M VVDLETTG + + G ++ GE + + + + ++ G Sbjct: 1 MKTSYAVVDLETTGPKFEEGGRIFQFGCSIIEQGEIVT-QVDLYINPETTIPYEIQQLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLT 118 ++ + + + L G TF N +FD + + + +S Sbjct: 60 VDKKEVKQA----PYFDEVASTIFQLLEGKTFVAHNISFDYSYLVESFRELAGIEWSAPC 115 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + ++ E L + + L +P HSA DA ATA F Sbjct: 116 -----------VDTVQLAQICYPTIESYRLQDLTQLLEIPHQQIHSAGSDAYATAQLFLN 164 Query: 179 LRHTAAA 185 Sbjct: 165 CLEELEQ 171 >UniRef50_P47729 DNA polymerase III polC-type n=1 Tax=Mycoplasma pulmonis RepID=DPO3_MYCPU Length = 1435 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 17/188 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++ +V D+ETTGL ++ G + G + H ++ + D ++ G Sbjct: 400 LDQEYVVYDIETTGLSPMLNELIQFGASVIKNGRIIETH-HFFIKPKSKLDSFTTKLTGI 458 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + A ++ + N AFD + ++ + ++ F Sbjct: 459 TQEHLEKGY----ELQEALEKISSIFKARIMVAHNAAFDHNFLKQKFIDNNIEFEE---- 510 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDM 178 + + K+ L VA +L V H A D++ F + Sbjct: 511 ------MISIDTLNLAKVLNPIYRSYRLGEVASKLSVVYDPSIAHRADYDSSVLTNIFIL 564 Query: 179 LRHTAAAH 186 Sbjct: 565 QMSHLKEK 572 >UniRef50_Q1NJL0 DNA polymerase III, epsilon subunit n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJL0_9DELT Length = 238 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 56/181 (30%), Gaps = 6/181 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 +V D E TGLD V +G + ++ + ++ V+ A + I+ Sbjct: 39 DFVVFDTELTGLDRRRDEIVSIGAVRINNLRIMVGDTFYVQVKPSQALPKDSTLIHRLTP 98 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMPFSPLTVGR 121 L A D+ + G D V R + Y S + Sbjct: 99 HQLSDA----PPLATVLPGFIDYCGQSLLVGHFVGLDVAFVNRACLRYYGARLSNPCLDT 154 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + L A+ + G+P H+A DA TA+ F L Sbjct: 155 MHLAQTHTEMQWQQYHDRFRMDISYNLAALGAKYGLPAFTHHNAYEDALQTAYLFIYLVK 214 Query: 182 T 182 Sbjct: 215 K 215 >UniRef50_C5CEK5 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEK5_KOSOT Length = 180 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 59/183 (32%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 + +V+D ETTG A +E+ + V E +Y ++ I G Sbjct: 2 EFVVIDTETTGSSPHKGAELIEIAGVVVRDWEIIYEESFNELIKPKRHVPISITMITGIN 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + D++R N FD + + + P Sbjct: 62 NLMLEDKL----PIEIVLPRFYDFVRDRVLVIQNAPFDLSFLDYFGKKIGIGELPNPF-- 115 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + LD + RLG+ +RH A+GDA ATA F + Sbjct: 116 --------VDTISLSRSLF--RGRHNLDIILARLGIFCEDRHRALGDAVATAKAFIKMVK 165 Query: 182 TAA 184 Sbjct: 166 MIG 168 >UniRef50_C0GM30 DNA polymerase III, epsilon subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GM30_9DELT Length = 249 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 57/190 (30%), Gaps = 21/190 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVE-QLAAADPKAMEINGYYE 62 +V+D E TGL+ V +G L + +++ I+G Sbjct: 51 DFVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACPTRDVPKQSIVIHGITP 110 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + D+ + G N D +++ R+ G Sbjct: 111 SEAQKA----PPLKEALQGLLDFCGNSIIVGHNINLDISVINRELKK--------EFGGE 158 Query: 123 WHHRLADLAAYAAGKLNI--------DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 H+ D A L ++ G+P+ H+A DA TA+ Sbjct: 159 LHNPCIDTMRLARQYREGQWTGAYECYEEYSYNLRKLSREFGLPLFTEHNAFTDALQTAY 218 Query: 175 CFDMLRHTAA 184 F L H Sbjct: 219 LFIYLVHKMQ 228 >UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=10 Tax=Clostridium RepID=A5I1F6_CLOBH Length = 855 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 13/182 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + ++V D+E+TG++ V++ + ++ + + ++G+ Sbjct: 492 NENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVI-ESFQRFLTPKKFVGDSYLVHGFS 550 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L + V + ++++ G N AFD +I+ + S+ + Sbjct: 551 DQFLKENGENK---KVVLKDFLEFIKDTVIVGHNVAFDISILNSELERLSLEKASFKTYY 607 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L+ +++ + H A+ D AT + Sbjct: 608 ---------DTLDIARRFYPNLTNHKLETLSKLFNTETKSSHDAMDDILATKDVLMAMLK 658 Query: 182 TA 183 Sbjct: 659 EK 660 >UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchnera aphidicola RepID=DPO3E_BUCBP Length = 245 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 65/181 (35%), Gaps = 18/181 (9%) Query: 6 IVVDLETTGLDY-----DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D+ETTG++ +E+G + + H ++ D ++ +I+G Sbjct: 8 IVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIHGI 67 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + + +++ + N FD + + + ++ Sbjct: 68 TDNFLLDK----PKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKISDY 123 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + + LDA+ R + V +R HSA+ DA A + Sbjct: 124 CNV------VDTLPLARQLFPGKKN-SLDALCNRYKINVSHRDFHSALIDAKLLAKVYTF 176 Query: 179 L 179 + Sbjct: 177 M 177 >UniRef50_D1B3F1 DNA polymerase III, epsilon subunit n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3F1_SULD5 Length = 260 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 17/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VD+E G +E+G + V+ G+ + + + +++ G Sbjct: 70 KFCIVDIEANGSKPALDAIIEIGAVMVEKGKIVGEFSS--LAKTDVLPESIVQLTGITLE 127 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + +++ F N FD ++ G + Sbjct: 128 EL----SFAPSLNSVLEGFRLFIKDAVFVAHNVNFDYYFISHSLEMAG-------FGPLL 176 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + RL + GL A+AE LG+ N H A+ DA AT Sbjct: 177 NRRLDTIDLARKCI----EAPKYGLSALAEHLGITFENHHRALYDAKATTEVLLH 227 >UniRef50_C1XKD8 DNA polymerase III, alpha subunit (Gram-positive type) n=2 Tax=Meiothermus RepID=C1XKD8_MEIRU Length = 261 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 18/176 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++V+D+ETTGL +E+ L+ ++ G F V P + G + Sbjct: 83 VVVLDIETTGLSPTDHEIIELALIRLENGRRTVFER--LVNPGVLIPPFISRLTGIRSQD 140 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + E L T N +FD + + Sbjct: 141 VRDA----ADIYTVLEEAWPLLDNATLIIQNASFDLGFLQPRFKRLGYRLDNPV------ 190 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDML 179 + + + GLD++A + P+ RH A+GD T + Sbjct: 191 -----VDTIHWARKALPGLTKRGLDSLAWAFDLGPIPARHRAMGDVETTLQVAHEM 241 >UniRef50_Q4K5K3 Exonuclease n=3 Tax=Gammaproteobacteria RepID=Q4K5K3_PSEF5 Length = 203 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 50/186 (26%), Gaps = 18/186 (9%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++ V+D ETTG+ + E+ ++ ++ G + + ++ G Sbjct: 2 ERIAVIDFETTGISPSSSCRATEIAVVILEQGRIVERYQSLM-NAGVRVPAFIEQLTGIS 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L EV +++ N AFD + Sbjct: 61 NAMLRSA----PPAEQVMNEVNEFVGITPLLAHNAAFDQKFWDFELGRIKRTRLQNFA-- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLR 180 + + + L + G+P H A+ DA A L Sbjct: 115 ---------CSLLLARRLMPAAPNHKLGTLTSFAGLPHTGQAHRAMADAEMAANLVAHLA 165 Query: 181 HTAAAH 186 Sbjct: 166 GELRHK 171 >UniRef50_B2KEE3 DNA polymerase III, epsilon subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEE3_ELUMP Length = 201 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 47/178 (26%), Gaps = 17/178 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +D ETTGL D A E+ + + + + + I+G Sbjct: 12 KFAFLDTETTGLSPYDGARLCEI-AVITNGALIAKSEYGTIINPRCVISQEVINIHGITN 70 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + L + N FD +A + + Sbjct: 71 EMAAQA----PYFEDIAPLLIGLLTDSVIVCHNADFDIPFLAAEFARCGLRMPQT----- 121 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + N + L + LG+ H A+ DA T F Sbjct: 122 -----VILDTLKFARKN-GNFKKNNLGFIVSELGLSNEGWHRAMADAKMTEKVFYHFL 173 >UniRef50_A8F6Z7 DNA polymerase III, epsilon subunit n=1 Tax=Thermotoga lettingae TMO RepID=A8F6Z7_THELT Length = 188 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 19/184 (10%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 +D ETTG+D + VEV ++ V G LY H V +I+ Sbjct: 8 FCAMDTETTGIDPMNGDRIVEVAIVPVYKGRILYRSIYHTLVNPKIRIPATIEKIHRITN 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +G+++ ++R + FD T + + + Sbjct: 68 EDIENA----PTIEQVFGQMRSFMRRSIMIFHRAEFDLTFIDISAKEIGIFPPSID---- 119 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D + L +AER G N H A+ DA TA F + Sbjct: 120 ----YIDTREISEIIFGEKKA----LSWLAERFGFEKPN-HRALTDAITTAKLFLKMTRK 170 Query: 183 AAAH 186 A Sbjct: 171 LAGS 174 >UniRef50_D2PY06 Exonuclease RNase T and DNA polymerase III n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PY06_9ACTO Length = 415 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 52/178 (29%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+D ETTGL +E+ ++ +D + P+ I+G Sbjct: 2 YAVIDTETTGLLPGHRHRVIEIAVVLLDQHGRFEHEWVTLLNPQRDLGPQ--HIHGILTA 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + L G G N FD + + +T Sbjct: 60 DVLAA----PEFVDVARHLGALLAGRMVVGHNVEFDLGFLRAEFARLGHVVPLITERS-- 113 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + A ++ L A G+ + HSA+ D ATA F Sbjct: 114 ------MCTMALAGYLYPGSKR-TLGACCAAAGISLQGWHSALADTRATAELFATYLR 164 >UniRef50_A4U4S6 DNA polymerase III epsilon chain-like protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U4S6_9PROT Length = 619 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 65/185 (35%), Gaps = 18/185 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYY 61 + D ETTGL D ++VG + + G L ++ ++M +G Sbjct: 429 TFVAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDPGIPIPAQSMAYHGIS 488 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + AV + + + AG N AFD + + + Sbjct: 489 NDMVKGK----PPLAVVLPQFAAFAGASALAGHNVAFDLKFLHAAQGETGIAL------- 537 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A +DP L+AVA RLGVP + SA+ DA TA L Sbjct: 538 --RQPVLDTMILA---ALLDPGYDLSLEAVAGRLGVPPLPHRSALSDALVTAEILARLIA 592 Query: 182 TAAAH 186 A Sbjct: 593 PLEAR 597 >UniRef50_B1I518 DNA-directed DNA polymerase n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I518_DESAP Length = 236 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 14/169 (8%) Query: 7 VVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 V+D ETTGL D + V + V + + + V+ A I G + Sbjct: 51 VIDTETTGLRPDAGDEVISVACVRVVSAKIQNDYFYTLVDPEREVPELAATITGITTERV 110 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + G G N FD + + Sbjct: 111 QGQ----PVLEKVLPRMLREMAGGVITGFNIQFDLVFLNNGLKR-------KCGTTLNPP 159 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + D+ + ++ GL A+A + V +RH+A+GDA TA Sbjct: 160 MVLDV--LSLCRILKPRARTFGLGAMAREYQISVKDRHNALGDALITAR 206 >UniRef50_C9RIV2 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIV2_FIBSS Length = 188 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 16/161 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLETTG + +E+G+ +D E + H V+ P E+ G + Sbjct: 3 KFAVVDLETTGGHGEDNRIMEIGIALMDGSEIVE-TYHALVDPGKPITPFVRELTGITDE 61 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + Q V V L+ F N FD + + + F+P Sbjct: 62 MVSGQ----PQFGVIAEHVAALLQDRIFVAHNVQFDCKYMTAELKRCCIKFNPA------ 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 L + L + E LG+P N H Sbjct: 112 -----RLCTVKLSRRVFPGQPSYSLHKLTESLGLPDFNHHR 147 >UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 family protein n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BET5_9FIRM Length = 295 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 54/183 (29%), Gaps = 20/183 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++DLETTGLD +E+G + + + Q K I G + Sbjct: 129 YIIIDLETTGLDPINDRIIEIGAIKI---GKENKEYSSIIWQDIKLSEKISNITGISDED 185 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A E D++ +T G N FD + P V Sbjct: 186 IKKGK----DEKNAINEFIDFIGEDTLVGYNINFDIKFINESLKRQEKPKIKNMTYDVMQ 241 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC---FDMLRH 181 + D + L+ V + G+ H A+ D + L Sbjct: 242 YVKNDKLFL----------KNYKLETVIKEYGINKNVPHRALEDVKIIQKLIAKLNKLVK 291 Query: 182 TAA 184 Sbjct: 292 RLE 294 >UniRef50_Q2SPW2 Putative exonuclease n=2 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPW2_HAHCH Length = 192 Score = 129 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 12/185 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +++V+D ETTGLD D A +E+ ++++ V L P+A EI+G Sbjct: 14 SSRVVVLDTETTGLD-DQAEVIEISVMDMRGNVL----FDQLVRPLNPVPPEAAEIHGVT 68 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + + G T N FD ++ + Y +P Sbjct: 69 NEKLANK----PNFPDVYISLWRAIGGRTVVAYNADFDRRLLKQTCAAYRLPMIEANWQC 124 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + L A ++G+ V H A+ D T + Sbjct: 125 AMNAYARYR---KEPDAKRGGYRRQSLAKAAAQMGIEVYGAHRAVADCFTTVEVIRAVAA 181 Query: 182 TAAAH 186 + Sbjct: 182 LSEPA 186 >UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2L6_SALRD Length = 538 Score = 129 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 15/161 (9%) Query: 24 EVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQ 83 E+G + V G + V + + ++ G ++ + + Sbjct: 2 EIGAVKVRDGSVVDR-FQQLVNPQQSVPGRITKMTGITTGMVFEA----PPADEVLPDYR 56 Query: 84 DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPT 143 +L N +FD + + + P L + + Sbjct: 57 AFLGDGILVAHNVSFDGSFLDAELQRMGDETLPNE----------TLCTVRLARRLLPGL 106 Query: 144 ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + +GL +A+ + V RH A+GDA AT+ A Sbjct: 107 DSKGLSRLAQFYDIDVEGRHRALGDAEATSVVLRRFVSQLA 147 >UniRef50_A6QC85 DNA polymerase III, epsilon subunit n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QC85_SULNB Length = 272 Score = 129 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 17/178 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 ++ V+D+ET G T+ +E+G + V+ GE + T + A +I G Sbjct: 70 QEQRYCVIDIETNGSKPGTSQVIEIGAVMVEKGEIVDR--LETFVECAFLPEYITKITGI 127 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A +++ ++ F N FD + + + + G Sbjct: 128 EPIDLKDA----PTRRAALTQLRQFMGDAVFVAHNANFDYSFLTASFERFGL-------G 176 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + +L + +E GL + + LG+ H A DA + Sbjct: 177 GIGNPKLCTIDLAKRTF----ESERYGLAYLIDFLGIETATHHRAYSDALCAEKVMEK 230 >UniRef50_B0TF42 DNA polymerase iii polc-type n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TF42_HELMI Length = 255 Score = 129 bits (326), Expect = 4e-29, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 60/190 (31%), Gaps = 24/190 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES---------LYFVPHITVEQLAAADPKA 54 +V D ETTGL + +G + + G V V A Sbjct: 61 TFVVFDTETTGLSVPNDDVIALGGVALPPGGEGAEWTEDTGKVRVFDRLVNPHRPIPVLA 120 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 EI G + + ++ + D++ G AFD + + Sbjct: 121 REITGIDDDMV----FSQPTIYPVLDDFLDFIDGAVLVAHGIAFDVGFLDKYLRPL---- 172 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 +++H + + ++ LDA+ G+ RHSA+GDA TA Sbjct: 173 ----RTKLYHPVIDTI---TLSRVLEPFRAEHSLDALVADYGITPRRRHSALGDAQMTAD 225 Query: 175 CFDMLRHTAA 184 F + Sbjct: 226 LFAAMLVRLQ 235 >UniRef50_UPI000196B395 hypothetical protein CATMIT_00376 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B395 Length = 212 Score = 129 bits (326), Expect = 4e-29, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 28/195 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA------------ 49 IVVD+E TGL+ +T +EV + + + + L Sbjct: 12 PDTYIVVDIEATGLNPETERLIEVAAIKYINHKEVAR-FSELINPLRDQLPVDLLDKDKT 70 Query: 50 --ADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR 107 + G R L+ E ++ + G N FD + Sbjct: 71 IYISDFIENLTGISNRMLHDARGE----KDVLREYIKFIGNDVIIGHNVRFDIRFIYDAL 126 Query: 108 VTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIG 167 + G ++ + D A KL + + L +A+ + + H A+ Sbjct: 127 LR--------DYGVLFQNDYIDTLKIAR-KLLHEDLKRYRLKDLADHYHIDYSHAHRAVN 177 Query: 168 DAAATAFCFDMLRHT 182 D T ++M+ Sbjct: 178 DCEITHDVYEMMMED 192 >UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular organisms RepID=C1FD33_9CHLO Length = 1473 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 55/187 (29%), Gaps = 18/187 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYER 63 ++V DLETTGL+ D +E+ +NV + V A P + + G Sbjct: 295 VVVFDLETTGLNKDRNRIIEIAAVNVSD--PTHQPMSTLVNPGRFAVPPPVVALTGITNA 352 Query: 64 GLYR-EALTEQQTAVAWGEVQDWLRGNT------FAGSNPA-FDSTIVARQRVTYSMPFS 115 + + Q+ A + E D R A N FD+ + + Sbjct: 353 MVSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEYRRLGRELP 412 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATA 173 K + L+++A GV H A DA Sbjct: 413 EDWRFVDTLPLARKT----LAKEAVPG-GSYKLESLAAHFGVDTAGASAHRAEADARMLG 467 Query: 174 FCFDMLR 180 L Sbjct: 468 DVLQRLV 474 >UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N494_SLAHD Length = 986 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 58/180 (32%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + L+V+D ETTGL Y+ ++ ++ GE + V + + + Sbjct: 2 LDRNLVVLDTETTGLSYNHDELTQIAAARMECGEITDW-FVTFVNPGKPIPDEIVRLTNI 60 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + A + +++ N FD + + Sbjct: 61 HDEDVVDA----PTPDEARALLAEFIGDAYVVAHNADFDKHFCTKSESGECL-------- 108 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +R + + A ++ + + L + P+ H A D A + +L Sbjct: 109 ----NRNIWVDSLALARIALPRMKSHRLIDLVHAFDAPIS-THRADADVEALCAVYRILL 163 >UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8GAH5_CHLAD Length = 233 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 10/180 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI---TVEQLAAADPKAMEINGY 60 V+D+ETTGLD + +G +NV+ G L +++ ++ Sbjct: 37 PYTVIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHL 96 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS--MPFSPLT 118 L A E+ + G D + + + L Sbjct: 97 TPEELRDA----PPPAEVLAELLRLIAGRVLVVHVAEIDVRFINAALKPFGGRLRRPILD 152 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R+ + ++ L + LG+P+ +H+A+ DA TA F Sbjct: 153 TARLAMTLHLNAQWLGELPRDMP-APAVELRGLTGALGLPIYAQHNALNDAVTTAQLFIA 211 >UniRef50_Q6NGF2 Putative DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium diphtheriae RepID=Q6NGF2_CORDI Length = 448 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA--AADPKAMEINGYY 61 + VD+ETT + D ++G V G + + + D + I+G Sbjct: 104 DFVAVDVETT--NSDWGSICQIGAAKVRDGHVVETKEWLCTPPGDLNSFDEANIAIHGIT 161 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + T A + + D+ A N FD T R + G Sbjct: 162 ADMVA----TAPSFAECYDQFADFAGDLPLAAHNAQFDMTAFLRATQAADIRLRTTNFG- 216 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + AA + P L V++ L V + N H+A DA A A L Sbjct: 217 ---------CSLAAARAAHLPIANHKLPTVSQHLHVELRNHHNACADAEACAGILIALTQ 267 Query: 182 TA 183 Sbjct: 268 RL 269 >UniRef50_Q0SVV0 Helicase/exonuclease n=12 Tax=Clostridium RepID=Q0SVV0_CLOPS Length = 870 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 57/181 (31%), Gaps = 13/181 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +IV D+E+TG+D +++ + ++ + + + + ++G+ + Sbjct: 502 ENIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDK-FEKFLKNKKSVKDSYYVHGFSD 560 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L R + E ++ + + G N +D I+ + ++ Sbjct: 561 EMLQRIGEEK---EKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFKTFY- 616 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L+ +++ H A+ D AT + Sbjct: 617 --------DTLDIYRRFYPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGELLVRAINE 668 Query: 183 A 183 Sbjct: 669 K 669 >UniRef50_UPI000196AD91 hypothetical protein CATMIT_00292 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AD91 Length = 297 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 60/183 (32%), Gaps = 16/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M++++ + D+E L+ D +G++ ++ + + DP +++ Sbjct: 1 MSEKITIFDIE--ELNNDPVSVCSIGIVVLEDMKVKETFYSLIRPPKLTFDPYRYKVHKI 58 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L ++ W ++ + + + D + + + + Sbjct: 59 RPQDLKKQ----PTFPEIWPKISKYFENSIVISHDIQSDLNHLLAVFRRFRIRKPTCYLS 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 KL + GL ++ + V + N H+A+ D+ A A + Sbjct: 115 ----------CTLVLAKLFHPELQKYGLGSLCDFYSVDLENAHNALADSLACAELLKKMM 164 Query: 181 HTA 183 Sbjct: 165 EEH 167 >UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium RepID=C8W8J2_ATOPD Length = 978 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 19/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++V+D ETTGL + +E+ + E + V+ + + Sbjct: 15 LEDDIVVLDTETTGLSFKKCSLIEISAAKLSGREIIER-FQTFVDPGCPIPEEITTLTSI 73 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A + +++ G N FD T + R P Sbjct: 74 TDEDVKGA----PSAKEAVAALAEFVGGLPVLAHNATFDRTFIERV---------PGGTS 120 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + ++ + L ++AE G + H A D A + +L Sbjct: 121 VSDTW----IDTLSLSRIALPRLSSHKLSSMAEAFG-TMKVTHRASDDVDALCGMWRILL 175 >UniRef50_D0RQR6 DNA polymerase III PolC-type (PolIII) n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQR6_9RICK Length = 223 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 16/186 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYY 61 V D ETTGL+Y+ + V + V + + + P+ +I+ Sbjct: 26 TFSVFDTETTGLNYNSGDKIISVSGVKVQNFQIDTEGKLDEFCDPMVEITPENEQIHHIS 85 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + + + + + + + N FD + + + Sbjct: 86 NRMVKGK----PNIYDLESKFRGFFKRSVLVAHNVKFDCNFLISNLSHTKLESRIREAVK 141 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDML 179 L + L A+ + L + + RHS++GD+ TA F L Sbjct: 142 --------LDTVLYSAGVYPDLKSYELSALCDELNITHHDQLRHSSLGDSIITARLFIHL 193 Query: 180 RHTAAA 185 + A Sbjct: 194 LKKSKA 199 >UniRef50_A8ET44 DNA polymerase III n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ET44_ARCB4 Length = 272 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 18/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + VD+ET G +E+G + GE L + P E+ Sbjct: 80 EQTFCFVDIETNGGTPKKGFQIIELGAVKYKNGEVLDSFNSLVFA--KEIPPYIQEVTKI 137 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L T + + +++L + F + FD ++ YS+ G Sbjct: 138 TPAMLE----TAPRIEKVLKDFKEFLGDDVFIAHDIKFDYNFISDSFEKYSL-------G 186 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ + +L + + E GL ++ E L + + N H A DA T F+ Sbjct: 187 KLLNRKLCTIDLAKRTIKS----EKYGLSSLKELLNIDIENHHRAYYDALTTQIVFEKCL 242 Query: 181 H 181 Sbjct: 243 K 243 >UniRef50_C2MC99 Exonuclease n=3 Tax=Bacteroidales RepID=C2MC99_9PORP Length = 189 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 51/178 (28%), Gaps = 21/178 (11%) Query: 4 QLIVVDLET-TGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 I +D ET TG EVG+ V GE + + M+ +G Sbjct: 5 DFIAIDFETATG---QRTSICEVGICLVRNGEIAETRSWLVQPEGNRYSYWNMQCHGIRP 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWL--RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R A W E+ + G N FD + + + Y + L Sbjct: 62 EDTKRA----PSFAEVWQEIAEQYIGEGALLVAHNVPFDRSCLEQAAQLYELTLPELQWD 117 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + L + E+L +P H A DA A + Sbjct: 118 ----------CSLRRARQIY-DYGCHTLAYLCEQLSIPEGRHHRAGDDAEMCARLYLR 164 >UniRef50_C6SPJ4 DNA polymerase III alpha subunit n=1 Tax=Streptococcus mutans NN2025 RepID=C6SPJ4_STRMN Length = 300 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 15/176 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ET GLD + +E+G + +D + + V+ + ++ G + Sbjct: 130 PYVVIDIETDGLDENENSIIEIGAVKIDPSQ--LEEFNYLVKYDKILPKQISKLTGISQE 187 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L R+ V E +++ + G FD + ++ + P + Sbjct: 188 LLDRDGKD---LQVVLQEFLNFIGNHDLVGYGINFDIKFINKKLKELNQP--------LL 236 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +R+ DL YA + + L V + + H A+ D+ + Sbjct: 237 KNRVYDLMQYAKKEKLF--LDNYKLQTVLKAYEIEDEVPHRALHDSKLIYDLSTKM 290 >UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFY8_LIBAP Length = 245 Score = 129 bits (324), Expect = 5e-29, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 19/180 (10%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYYERG 64 IV D+ETTGLD +E+G + + + + P+A++++G + Sbjct: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNT--FAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + + E D+ + N FD + + + + Sbjct: 70 LKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDP-------L 118 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLR 180 R+ D + A K P+ L+++ +R G+ + +R H A+ D+ + + + Sbjct: 119 DPSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMM 175 >UniRef50_Q2B6U9 Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6U9_9BACI Length = 243 Score = 129 bits (324), Expect = 6e-29, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYER 63 IV+D+ETTG D + +G + ++ G + + P+ ++ G Sbjct: 60 IVMDIETTGFFPDQGDEIISIGAVKIENGTINEDKKFYSLIRYEKTLSPQIEQLTGLRGS 119 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E + T + + + + + Sbjct: 120 QLKEA----PPLPEVLIEFFKFCEARTIIAHHARHEKSFLQNASWKH--------FKAPL 167 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 HR+ D + ++ L+ L+ + G+PV+ RH A+ DA A + Sbjct: 168 KHRIIDTS--FLYRIAEPELNLQRLEDLCSHNGIPVMERHHALEDARLAAELWC 219 >UniRef50_A7K086 DNA polymerase III epsilon subunit n=22 Tax=Vibrionaceae RepID=A7K086_VIBSE Length = 248 Score = 129 bits (324), Expect = 6e-29, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 8/184 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 + VD ETTGL+ + + +GL+ H V + +++ I+G + Sbjct: 57 PFVSVDFETTGLNAEEDAILTIGLVPFTIDRVQCSGSAHWVVNPNRELNEESVVIHGITD 116 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLTV 119 + Q GE+ D L G + + + F + Sbjct: 117 SEVKNA----PQLTHILGEILDALSGKVVLVHYKNIERQFFNNALLNSIGEGIHFPVVDT 172 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + H + KL L ER +P H A+ DA ATA F Sbjct: 173 LDIEHAIQRRECSGLFNKLKGKKPGSVRLGHARERYRLPAYQPHHALTDALATAELFQAQ 232 Query: 180 RHTA 183 Sbjct: 233 LQYH 236 >UniRef50_B2A7J4 DNA polymerase III, epsilon subunit n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7J4_NATTJ Length = 864 Score = 128 bits (323), Expect = 7e-29, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 15/185 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +L+V D+ETTGLD +E+ L + H + ++ +++G + Sbjct: 498 NKLVVFDVETTGLDTTKDEIIELAALKAGKDGVVD-EFHEYLRNSKPV-GESFQVHGISD 555 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + + +++ G N +D T+V Q + Sbjct: 556 QVLLEQGKPP---EKSLASFTNFIDDCDLVGHNVNYDITMVENQCKKL-------LNQDL 605 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 H + + E L+++ E L + H A+ D AT +L Sbjct: 606 ELHGYDTVDI---SRRYFPRLEKYNLESLCEDLQISSKPTHRAMDDVEATFELLQILLEK 662 Query: 183 AAAHL 187 + Sbjct: 663 IKPGI 667 >UniRef50_B0RTE6 DNA polymerase III epsilon chain n=11 Tax=Proteobacteria RepID=B0RTE6_XANCB Length = 245 Score = 128 bits (323), Expect = 8e-29, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 65/183 (35%), Gaps = 14/183 (7%) Query: 6 IVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D ETTGL+ VE+G + + H + +P A E+ G Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDCDFEPGAQEVTGLTLEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A E ++ G N AFD + + F + + Sbjct: 64 LADK----PVFAEVVEEFLAYIDGAELIIHNAAFDLGFLDNELSLLGDQFGRI----IDR 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + D A + P + LDA+ +RLGV +R H A+ DA A + L Sbjct: 116 ATVVDTLMMARER---YPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSG 172 Query: 183 AAA 185 Sbjct: 173 QEE 175 >UniRef50_A6Q1S7 DNA polymerase III, epsilon subunit n=2 Tax=Epsilonproteobacteria RepID=A6Q1S7_NITSB Length = 276 Score = 128 bits (323), Expect = 9e-29, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 19/184 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 ++ +VVD+ET G + + +E+G + + F I ++ G Sbjct: 66 QEQEFVVVDIETNGSKPEFSQVIEIGAIKFKGNTIIDRFESFIY---AEDVPEYISKLTG 122 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L +++L+ F N FD ++ + + Sbjct: 123 ILQEDLENA----PSQKEVLLSFKEFLQDAVFVAHNVRFDYNFISSKLEQLGLEKLANRK 178 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L + + I +E GL+ + E LG+ H A DA M Sbjct: 179 ----------LCSIDLARKTI-ESERYGLEFLNETLGINTAVSHRAYADALTAYKILQMS 227 Query: 180 RHTA 183 Sbjct: 228 FEKL 231 >UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales RepID=Q252U5_CHLFF Length = 249 Score = 128 bits (322), Expect = 1e-28, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 16/179 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D E TGLD +E ++ + ++ I+ + Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAKRFTFD-NVIDSMETLINPDRVISAESQRIHRISDAM 67 Query: 65 LYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + + ++Q +L+ + G + FD ++ ++ F + Sbjct: 68 LKDQ----PRISEVFPKIQAFLKEGDYIVGHSVGFDLQVLTQEAERIGETF-------LS 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + D A + L+A+A VP H A+ D F Sbjct: 117 KYCIIDTLRLA---KEYGDSPNNSLEALAVHFNVPYDGNHRAMKDVEININIFKHFCKR 172 >UniRef50_C0N4N3 Exonuclease superfamily n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N4N3_9GAMM Length = 240 Score = 128 bits (322), Expect = 1e-28, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 48/184 (26%), Gaps = 8/184 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHIT-VEQLAAADPKAMEINGYYE 62 + +D ETTGLD V GL+ H V+ +++ + Sbjct: 49 PFVALDFETTGLDPRYNEIVSFGLVPFTLRGIRPSDGHYQVVKPNCVLSEESIAFHRITH 108 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP---FSPLTV 119 + T E+ L G + + F + Sbjct: 109 SQVD----TAPPLEKVLDELLGRLSGCIVVVHYQQIERPFLDLACRKLWGEHCLFPLIDT 164 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + K LD R G+P + H A DA ATA F Sbjct: 165 MAIEARWQRSGWKHRLKKTLGLQPVSIRLDDSRRRYGLPSYSAHHAKVDAMATAELFLAQ 224 Query: 180 RHTA 183 Sbjct: 225 VARH 228 >UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TRJ1_9FLAO Length = 229 Score = 127 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 14/186 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V D ETTGLDY + +G + V + + + +P + +I+G Sbjct: 42 QNTRFVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQDFYNPDSAQIHGI 101 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + A + D++ + G + FD +V + + G Sbjct: 102 ----LKQGNYLKVNEKEAIAQCLDFIGTDILVGHHVGFDVAVVNQSLKRAGL-------G 150 Query: 121 RVWHHRLADLAAYAAGKLNIDPT---ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 R+ + +L Y ++ + LD +AE L +P+ +RH+A GD+ TA F Sbjct: 151 RLKNRQLDTEILYKRLVHPVNRPLQDKRYTLDELAEALKIPLHDRHTAAGDSLITALAFI 210 Query: 178 MLRHTA 183 + H Sbjct: 211 KIVHKL 216 >UniRef50_A7HHL1 Exonuclease RNase T and DNA polymerase III n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HHL1_ANADF Length = 238 Score = 127 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 58/190 (30%), Gaps = 15/190 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV-EQLAAADP-KAMEING 59 V+D E TGLD + +G + + G + V + A P + + I+G Sbjct: 44 TMTFTVLDCEMTGLDPARDEILSIGAVRIRNGRIVMAERFYQVFKPTEAVSPKEVILIHG 103 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR---VTYSMPFSP 116 + R A + ++ + G + D + + S+ Sbjct: 104 LGPDEVSRGL----PLGDALERLLAFIGDSVVIGHFTSVDLSFLNAALASRKERSLKNPA 159 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L ++ + + L+ + +G+P H A DA T F Sbjct: 160 LDTRLLYAWWRRRTSPAGQAAADA------NLEDIVIEMGLPRYPAHHAFYDALTTGMVF 213 Query: 177 DMLRHTAAAH 186 L A Sbjct: 214 LKLLGDFEAS 223 >UniRef50_C0Z5S3 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5S3_BREBN Length = 235 Score = 127 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 56/179 (31%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEINGYY 61 +++VVDLETTG D + +G + + L + V A P + G Sbjct: 52 EVVVVDLETTGFYPDHGDAIISMGAVAMRGEHLLLGDSFYTLVNPGRAIPPHIRSLTGIT 111 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A ++ + + + S Sbjct: 112 DDMVADA----PPLLEALSRFFQYVGDRPLVAHHSRHEREFLRSGLWKTSRRP------- 160 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + HR+ D +L +P LDA+ +P+ RH A DA A + Sbjct: 161 -FTHRMLDT--MLLIRLLNNPIGNGSLDALCAAHDIPISRRHHAYCDALAAGTLWAKYL 216 >UniRef50_D2QAZ6 DnaQ DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium RepID=D2QAZ6_9BIFI Length = 317 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 59/183 (32%), Gaps = 19/183 (10%) Query: 1 MAKQ-LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M + VVD ETTGL+ +E+GL++V L + A I+ Sbjct: 1 MNSKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVHRDI--GAQWIH 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 E + + E++D L G F N AFDS + + + Sbjct: 59 HIS----AVELIHAPEFEGIARELRDLLAGRVFVAHNVAFDSKFLLSEYRRLGTDIPVNS 114 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + I L G+ + HSA+ DA ATA Sbjct: 115 HTM--------LCTMKLSRSLIGVG---SLADCCREFGIDNEDAHSALSDAHATALLLGR 163 Query: 179 LRH 181 L Sbjct: 164 LMD 166 >UniRef50_A6CHW6 DNA polymerase III, alpha subunit n=1 Tax=Bacillus sp. SG-1 RepID=A6CHW6_9BACI Length = 245 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 61/179 (34%), Gaps = 17/179 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 + DLETTG + V +G + + + L + + L + G Sbjct: 62 TFTIFDLETTGFFPEIGDEIVSIGAIKMQGNKILDQKTFYEVINPLQNVSLETKRFTGLR 121 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + V + ++ +G +FD + ++ + +P Sbjct: 122 RTD----FIKAKTLPVGLKDFLEFCKGTILVAHPASFDINFLQKRIRKWDLPSFEPEY-- 175 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +YA K ++ + LD + ++ + RH A+ DA TA F L Sbjct: 176 --------IDSYALAKELLNEQKCY-LDDLVKKFQISEKTRHHALNDAIMTAEVFQELL 225 >UniRef50_C9Z7X4 Putative exonuclease n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z7X4_STRSW Length = 215 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 64/189 (33%), Gaps = 17/189 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGY 60 + + V+DLETTGLD + VG + V G V A +++++G Sbjct: 20 SAEYCVIDLETTGLDLRRDEIISVGAVPVREGRIDLGDSFYSLVRPRCAVSVASIKVHGL 79 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A + L G + ++R + T Sbjct: 80 RPGDLDSA----PDPATVGQALSPRLSGRVVVAHAAWIERAFLSRTQSTVGWSQ------ 129 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEG---LDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + D AA A + L+ +A RLG+PV H A+GDA TA F Sbjct: 130 ---VRAVVDTAALARATGCWAGHDSGREPPLELLARRLGLPVCTPHHALGDALTTATVFL 186 Query: 178 MLRHTAAAH 186 L A Sbjct: 187 ALAARAERT 195 >UniRef50_B8G6F9 DNA polymerase III, epsilon subunit n=3 Tax=Chloroflexus RepID=B8G6F9_CHLAD Length = 280 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 56/182 (30%), Gaps = 17/182 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 L+ D+ETTGLD + E+ +L + + + DP+A ++NG Sbjct: 14 PLVFFDVETTGLDLQNGHRICELAMLR-REHRQITGQINTLINPERELDPQASQVNGIRA 72 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + A +V + N FD + + + P Sbjct: 73 EDLQSA----PRFAELTVQVVQLSQQAVRVAHNLPFDESFLNMELARAGYPPLTG----- 123 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + L A+A G+P H A+ D FD L Sbjct: 124 -----PALDTLELARRLGIRRGSLSLGALATSFGLP-TPTHRAMDDVLTLHALFDRLVAK 177 Query: 183 AA 184 A Sbjct: 178 LA 179 >UniRef50_Q8D3D2 DnaQ protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3D2_WIGBR Length = 246 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 70/185 (37%), Gaps = 18/185 (9%) Query: 2 AKQLIVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME 56 ++ IV+D ETTG++ Y +E+G + + H ++ + +A + Sbjct: 5 TERQIVLDTETTGMNKNGPHYYGHRIIEIGAIEMINRRLTGRCFHTYLKPDRLVEIEAFK 64 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 I+G + L + + ++++G+ N FD + + + Sbjct: 65 IHGISDEFL----FFQPTFEEIMEKFINFIKGSELIIHNSVFDIGFINNEIQLCN----- 115 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAF 174 ++ + + + + LDA+++R G+ R H A+ DA + Sbjct: 116 -KNLNNINYYCSVIDTLKLARNIFPG-KRNNLDALSDRYGIDTTKRILHGALLDAEILSN 173 Query: 175 CFDML 179 + ++ Sbjct: 174 VYLLM 178 >UniRef50_A1SNC5 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Nocardioides sp. JS614 RepID=A1SNC5_NOCSJ Length = 405 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 51/177 (28%), Gaps = 17/177 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++DLETTGL VE+GL+ V ++ V P I+G R Sbjct: 4 YTIIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQRDVGP--THIHGITAR 61 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + L G T N FD+ + + Sbjct: 62 DVLDA----PTFQEVAPYLIGSLAGRTLVAHNARFDTQFLDYEFERA---------SVGT 108 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + L VP + H+A+GDA A A + Sbjct: 109 RPPTPSLCTMQLS-SSYLRGASRKLKDCCVAANVPHADEHTALGDARAVAGLLNYYL 164 >UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRZ3_METLZ Length = 228 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 51/181 (28%), Gaps = 15/181 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVD--TGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++VD ETTGL+ E+ + D +S+ E+ G Sbjct: 1 MLIVDTETTGLNPKIDRITELAAIKFDKYGNKSVMDEYISLPN-DICYPENVQEMTGITP 59 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + E++ A + + N FD + + F Sbjct: 60 EILELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRHRYVFPNGWG--- 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-VVNRHSAIGDAAATAFCFDMLRH 181 + D + L G+ V N H AI D A FD + Sbjct: 117 ----VIDTLTVFRDRKPQP----HRLSDAISYYGLDGVKNSHRAIDDVVALCAVFDAMCQ 168 Query: 182 T 182 Sbjct: 169 E 169 >UniRef50_C9R9F3 DNA-directed DNA polymerase n=1 Tax=Ammonifex degensii KC4 RepID=C9R9F3_AMMDK Length = 233 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 60/184 (32%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + DLETTGL + +G + + E LY V P ++ G Sbjct: 46 EFVAFDLETTGLKPGAGDEIIALGAVRLRGNELLYPAFDQLVRPGRRVPPLVEKLTGISS 105 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L A +L G N AFD + + + R+ Sbjct: 106 GLLRYA----PPLASVLPFFLGYLSRGFPLGFNVAFDLAFLNQALKPHG---------RL 152 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D+ A E +D +A L V + RH+A+GDA A + LR Sbjct: 153 SEQAVLDVWTVARALDAR--CEHATMDEIASFLKVNLEGRHTALGDALIHARMWLKLRER 210 Query: 183 AAAH 186 Sbjct: 211 LKEK 214 >UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WWQ3_ALIAD Length = 240 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 63/188 (33%), Gaps = 27/188 (14%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +VVD ETTGL + VE+ L+ V V V+ P+A ++ Sbjct: 4 QEARFVVVDTETTGLPPEG-RVVELALVEVGLECEPQIVYSALVDPGCPIPPEASAVHHI 62 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 +R + + + + W +V ++ N FD ++ P+ Sbjct: 63 TDRDVAGK----PRLSQVWPKVLGYIGDAILVAHNAEFDRGML----PETGRPW------ 108 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCFDM 178 + + + + LG+ V H A+GDA TA F Sbjct: 109 ---------ICSKRLAQHLWRDAPKHSNQVLRYWLGIDVEVGQPHRALGDAIVTAHVFQR 159 Query: 179 -LRHTAAA 185 LR A Sbjct: 160 ELRAYLEA 167 >UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD Length = 1043 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + K ++V+D ETTG+ + ++ + G+ + + V + + Sbjct: 33 LDKDIVVIDTETTGISFVRDELTQIAAARMVEGKIVDW-FVTFVNPGRPIPEEISHLTSI 91 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 YE + A ++ D++ + N AFD + S+ + Sbjct: 92 YESDVADA----PSPEEAVFQLVDFVGESCLVAHNAAFDKHFCTKPATGESLTHN----- 142 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + ++ + + L + P+ H A D A F +L Sbjct: 143 -------IWIDSLDLARIALPRLKSHRLLDLVRAFDAPLS-THRADADVEALCAVFRILL 194 >UniRef50_B4WSD0 Exonuclease family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSD0_9SYNE Length = 273 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 13/180 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A L VVD+ETTG A +EV +L+ + L + I G Sbjct: 28 ASPLTVVDVETTGALGHNARVIEVSVLHASLADGLEHQESYLINPQVKIPEYITRITGIT 87 Query: 62 ERGLYREALTEQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W + Q F N FD + + + + F Sbjct: 88 PEMV----YSSPPPEEIWPKCQPLLEGDRVFTAHNLDFDYSFLRTEYKRLGIRF------ 137 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L L ++ + L + + + H A D A L Sbjct: 138 --YKPPLQKLCTVILSRMLLADLPSRSLPNLIKHFNFDIDTSHRAEADTKACWLLAKTLL 195 >UniRef50_C6UMV7 Putative DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UMV7_HODCD Length = 182 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 16/184 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYYERG 64 I++D ETTGL T +E+ + ++ G H A ++G Sbjct: 9 IILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYFNPQPVKVSRSAFNVHGISNEF 68 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E +++ G+ N FD I+ R+ Sbjct: 69 LSDK----PAFKSCAREFLEFVAGHELIAHNARFDLQIINRELQMAGADPIDAG------ 118 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDMLRHTA 183 + + K + A+ +R + HSA D A ++++ Sbjct: 119 ---CWRDSLSIAKQLFPN-RSNSMAALCKRFNLECETETHSAARDCELLARVYELILDEK 174 Query: 184 AAHL 187 + Sbjct: 175 RRRI 178 >UniRef50_A1Y2U5 Transposase n=2 Tax=Bacteria RepID=A1Y2U5_9BACT Length = 275 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 55/177 (31%), Gaps = 12/177 (6%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IV+D ETTGL D A E+ +L+V L V +A I+ + + Sbjct: 87 IVLDTETTGLG-DDAEICEITILDVTGAPILD----TLVRPTRPIPVEATAIHKITDAMV 141 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + G T N AFD+ ++ + + + LT Sbjct: 142 ASA----PSWPEVAEQYAAAVAGRTVVAYNVAFDARLLRQTYQIHGITAPVLTTACAMLM 197 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 Y + L A GV H A+ DA T L+ Sbjct: 198 YAEWHGEYDRSRDRW---RWLKLIEAATDCGVAEDGAHRALADARMTLGVLRYLQRR 251 >UniRef50_B4RBF9 DNA polymerase III epsilon chain n=3 Tax=Alphaproteobacteria RepID=B4RBF9_PHEZH Length = 234 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 63/190 (33%), Gaps = 16/190 (8%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG D VE+ L ++ H ++ +A +++G Sbjct: 1 MARE-IVLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDPCRDMPAEAEKVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E D++ N AFD V + S P Sbjct: 60 LSTAFLRGKPKFEAP--EIVEAFLDFVADAPIVAHNAAFDRAFVNYELGLCSRAELPDH- 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + A K LDA+ +R + + R H A+ D A + Sbjct: 117 --------RWIDTLALAKQRFPGMHN-SLDALCKRFKISLAEREKHGALIDTKLLAAVYL 167 Query: 178 MLRHTAAAHL 187 LR L Sbjct: 168 ELRGGRERRL 177 >UniRef50_UPI000185C325 putative DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C325 Length = 545 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 53/185 (28%), Gaps = 18/185 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 D+ET + DT +++G+ V G+ + D + I+G Sbjct: 165 PFAAFDVET--ANEDTGSIIQLGVAVVRGGKVTERYSWMCRPPKGLEYFDEANVAIHGIT 222 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E + D + N FD T ++R +P L Sbjct: 223 AADVAGE----PSFPEQLAKFVDVVGDLDVVAHNARFDFTALSRACRAEGIPAPKLNFA- 277 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 Y + L +AE G + N H A DA A A L Sbjct: 278 ---------CTYMWARQMQLGLPNLKLPTLAEAAGASLENHHDATADAVACAEVALWLME 328 Query: 182 TAAAH 186 A Sbjct: 329 QQRAT 333 >UniRef50_A9FIM8 Exonuclease n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIM8_SORC5 Length = 298 Score = 126 bits (318), Expect = 3e-28, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 45/186 (24%), Gaps = 19/186 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGY 60 + L+ +DLE TGL ++ +EV + E ++G Sbjct: 30 SAPLVFLDLEMTGLRPESDRVIEVCAERTRGDACEDAITSLVRPEPGV---FGNAHVHGI 86 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R L A + G A+D + + Sbjct: 87 DPRELAGA----PTFAELCDRIDQVTEGAVLVAHAAAWDVAFLEAELARAGRARRLPHY- 141 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + L ++ LGV H A D A F + Sbjct: 142 ---------LDTLVLSRRAF-ALPSHSLASLCRELGVHRERAHRAEDDVHALRAVFRKIV 191 Query: 181 HTAAAH 186 A Sbjct: 192 EVLAPR 197 >UniRef50_Q31RN6 Exonuclease n=2 Tax=Synechococcus elongatus RepID=Q31RN6_SYNE7 Length = 256 Score = 126 bits (318), Expect = 3e-28, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 47/171 (27%), Gaps = 12/171 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A VVD+ETTG A +E+G+L E + F + + G Sbjct: 19 AATFTVVDVETTGFKPPQARVIELGILQATLAEGIQFQQAELLNPGIPIPEAIAQFTGIT 78 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + L+ N FD + + + F + Sbjct: 79 TDLIATADPP----ESVLPPLLPRLQTGILVAHNLPFDYRFLTAEYQQLGLDFERSPTEQ 134 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 L + + L + + G PV H A D A Sbjct: 135 --------LCTVQMSRQLLADLPSRSLPQLVQHFGFPVGQSHRAAADVEAC 177 >UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Campylobacter RepID=B9KCR0_CAMLR Length = 254 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 21/179 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVD+E+TG + +E+G + + E F + V + E+ G Sbjct: 72 FCVVDIESTG-GIKSGQILEIGAVKIQNYKEIDRFESFVKV---ESIPENITELTGISLD 127 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + +L+ + F N FD +++ G + Sbjct: 128 MVENA----PSLKTVLNNFKLFLKDSIFVAHNVRFDYHFISKAMYEN-------DFGVLL 176 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + RL + + GLDA+ E L + H A+ DA A + Sbjct: 177 NRRLCTIDLAKKCI----ESPKYGLDALKEFLCIE-SKHHRALSDALAASEILKYCLKK 230 >UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales RepID=A8VXY5_9BACI Length = 935 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 17/183 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + +++DLETTG+ YD +++ ++ E L + + G Sbjct: 1 MN-RYVILDLETTGVAYDKGDRIIQIAYQVLEDQEVLKR-FSTYINYDKPVPAFIQSLTG 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L E+ L F N FD + V Sbjct: 59 ISGEHLKNA----PLFEEVAPEILSDLEEAYFVAHNVEFDLKFLNESLEDAGYASFQGPV 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + ++ + + L +A+ + H A D AT F+ L Sbjct: 115 ----------IDTVELARICLPSEDSYRLSDLAKTVQATHTAPHQADSDVEATRALFNEL 164 Query: 180 RHT 182 Sbjct: 165 FDK 167 >UniRef50_C6RD51 Mature parasite-infected erythrocyte surface antigen n=2 Tax=Campylobacter RepID=C6RD51_9PROT Length = 311 Score = 126 bits (317), Expect = 4e-28, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 19/182 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+G ++ +E+G L + GE + T E+ G Sbjct: 73 FCVVDIETSG-GINSGQIIEIGALKLQNGEIIGK--FETFVYAPYVPENISELTGITAEH 129 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L A + + +L + F N FD ++ G + + Sbjct: 130 LKNA----PSLAFVMEQFKVFLGQSVFVAHNVRFDYGFISATLEALG-------YGELLN 178 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 +L + + GL + E LG+ H A+ DA A A F Sbjct: 179 RKLCTIDLARRTIAS----PKYGLGTLKEILGIDNT-HHRALSDAIAAAEIFKYSLQKLP 233 Query: 185 AH 186 + Sbjct: 234 SE 235 >UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria RepID=C2L049_9FIRM Length = 178 Score = 126 bits (317), Expect = 4e-28, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 18/178 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + IV D+ET + +G+ V+ G+ + V D +++ G + Sbjct: 3 RFIVFDVET--PNRKNNRISAIGITVVEEGKIS-KEFYSLVNPETNFDYFNVKLTGISKA 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + W +++ N +FD ++ + Y + W Sbjct: 60 SVKDA----PTFPELWQQIEPLFSDGMLVAHNASFDMNVLKNCLLDYEID---------W 106 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L G+ L+ V E G+ + H A D+ A A Sbjct: 107 KPYARYLCTVKMGRSLFPD-RSHKLNMVCEDFGISLQ-HHRADSDSHACAEILLRYLE 162 >UniRef50_UPI0000D530A7 DNA polymerase III subunit epsilon n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D530A7 Length = 226 Score = 126 bits (317), Expect = 4e-28, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 19/186 (10%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D+ETTGLDY + +E+G + + + + H + L + ++I+G Sbjct: 4 IILDIETTGLDYKEGHRIIEIGCVEL-NQKEVGSNFHQYINPLKTLTDENIKIHGITNEF 62 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + ++++ + N FD + + S P ++ Sbjct: 63 LEDK----PLFEDVADKFLNFIKDSQIIAHNANFDVGFLNYELEKVSKP-------QIAK 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP---VVNRHSAIGDAAATAFCFDMLRH 181 R+ D A + P + LDA+ ++L V H A+ DA + L+ Sbjct: 112 DRIVDTVVIARNRF---PGQQVNLDALVKKLKVNSLVDREFHGALKDAKILTDVYLELQG 168 Query: 182 TAAAHL 187 L Sbjct: 169 INQMGL 174 >UniRef50_A9VZJ3 Exonuclease RNase T and DNA polymerase III n=7 Tax=Alphaproteobacteria RepID=A9VZJ3_METEP Length = 297 Score = 126 bits (317), Expect = 4e-28, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 51/183 (27%), Gaps = 17/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ +D ET + VGL ++ G + + P + ++G Sbjct: 2 KVVAIDFET--ANERRDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGILPA 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E L G N FD ++A + P + Sbjct: 60 DVRDA----PTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGH--- 112 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + GL VA RLG+ H A DA A A H Sbjct: 113 -------CTLQIARRVFPDPAGHGLAKVAGRLGIRFE-HHDAGEDAFACAEIALAALHET 164 Query: 184 AAH 186 A Sbjct: 165 GAA 167 >UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactobacillus RepID=D0R432_LACJF Length = 938 Score = 126 bits (317), Expect = 4e-28, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 46/169 (27%), Gaps = 16/169 (9%) Query: 5 LIVVDLETTGL-DYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG ++ G + + + + + Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCAIIKKRKVVKTYSF-LINPHREIPQAVENLTHISNE 68 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + +++ L F N FD + + V + Sbjct: 69 DVAKA----HDFSYYAPKIRKILENTIFVAHNVNFDLPFLNYELVNAGLEPLTGKA---- 120 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + ++ L + RL + +N H A DA T Sbjct: 121 ------VDTVELAQIVFPTFPSYKLRDLTARLRIKHLNPHRADSDALVT 163 >UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4FB13_9ACTN Length = 977 Score = 126 bits (317), Expect = 4e-28, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 19/179 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +IV+D ETTGL + + +E+ + E + V+ + ++ Sbjct: 44 EDDVIVLDTETTGLSHRDSELIEIAAARLRGREIVDR-FDTFVKPSGLIPEEITKLTSIT 102 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A + +++ G N AFD + + + Sbjct: 103 NVDVAHA----PSAVDAVASLAEFVGGCPVVAHNAAFDRGFIEQVPGGADVSD------- 151 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + A ++ + L +AE G V H A D A + +L Sbjct: 152 ------IWIDSLALSRIALPRLASHKLAVMAELFGCESV-SHRANADVEALCGVWRILL 203 >UniRef50_Q4ZCJ2 ORF013 n=5 Tax=root RepID=Q4ZCJ2_9CAUD Length = 306 Score = 126 bits (317), Expect = 4e-28, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 18/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D+ET + + + LL + + + I+G E Sbjct: 2 DFVAIDVET--ANEQRSSICSIALLKFQDNKM-RDAIYTHINPETYFSSINTSIHGISEE 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + +L + N +FD + Y++P Sbjct: 59 DV----MDSPKMYQMHEAIIRFLDNHIIVAHNTSFDMYALCDSFKKYNLPLPSNQYF--- 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 Y K L +AE + H+A DA A + Sbjct: 112 -------CTYRLSKDLY-NLPSYRLQDLAEHFDIKNEEYHNAFYDAKVCAKIAYNILKDQ 163 Query: 184 AAHL 187 A+L Sbjct: 164 DANL 167 >UniRef50_Q1PZU3 Strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZU3_9BACT Length = 204 Score = 126 bits (317), Expect = 4e-28, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 17/179 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ET + + +GL ++ + + DP + I+G + + Sbjct: 4 VAIDFET--ANAKRSSVCSLGLAIIEEQTIVKRTSWLIRPPELYFDPFSTYIHGISAKDV 61 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + W E+ +L G+ N +FD +++ Y +P+ PL Sbjct: 62 EDK----PEFYQLWDEIFPFLEGSYLVAHNASFDMSVLCCILDVYKIPYPPLNYF----- 112 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 A K L+ ++ L + H A DA A A + Sbjct: 113 -----CTLAIAKRVWPGLLGYALNKISRYLEIEFK-HHDAEEDAVACAKILLHAYNELG 165 >UniRef50_C2BJB2 DNA polymerase III subunit epsilon n=1 Tax=Corynebacterium pseudogenitalium ATCC 33035 RepID=C2BJB2_9CORY Length = 232 Score = 126 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 14/183 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG + +E+ + D L H + K I+G Sbjct: 34 FAVIDTETTGFNKRYDRIIELAVARFDESFRLVDQWHTLINPDGK-QIKNSHIHGITNAD 92 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + E + G N FDS ++ + Sbjct: 93 VAHA----PTFPEVYTEFAARVDGMVLMAHNAPFDSKMILAEAERI--------TPDGED 140 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 + A K + L A+ + +G+ H+AI DA AT + L A Sbjct: 141 VYFPFVDTIALAKQMV-SLRSYKLSALLDHVGLHNPQSHAAIADATATGQMLNKLFGKEA 199 Query: 185 AHL 187 + Sbjct: 200 TKI 202 >UniRef50_B5FC60 DNA polymerase III subunit epsilon n=58 Tax=Vibrionales RepID=B5FC60_VIBFM Length = 213 Score = 126 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 75/180 (41%), Gaps = 10/180 (5%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYY 61 +L+ +D ETT L+ + A V + + + L H+ + + + +++I+ Sbjct: 28 DELVSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPPQSLNSDSIKIHQLR 87 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L+ A ++ +++ G + +D I+ R + + P ++ Sbjct: 88 HQDLHHGL----SEQQAMTQLLEFIGNRPIVGYHIRYDKKILDRACLRHFSHPLPNSLIE 143 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 V H + +L + ++A+++ LG+P RH A+ DA A A + L H Sbjct: 144 VSH-----IYHNKLERLLPNAYYDLSIEAISKHLGLPQTERHDALEDAIAAALIYVRLTH 198 >UniRef50_C3XF27 DNA polymerase III subunit epsilon n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XF27_9HELI Length = 268 Score = 126 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 17/180 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +L VD+ETT +E+G + GE L T+ +++ G Sbjct: 77 EAKLCFVDIETTSASVKNGQIIEIGAIIAQNGEILD--TFDTLVYSPFVPEDIIDLTGID 134 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + +L + F N +FD +A Y MP Sbjct: 135 SYMLEDA----PRLEQVLKQFRAFLGDSVFVAHNVSFDYNFIAESLHEYDMPP------- 183 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 +++ RL L ++ + L + + LG+ H A DA +++ Sbjct: 184 LFNPRLCTLDLSRRTIVS----KKYALAYLNDMLGINTAQAHRAYADALTAFRLYEICMQ 239 >UniRef50_B1GYV2 DNA polymerase III epsilon subunit n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYV2_UNCTG Length = 198 Score = 126 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 + L+ +D+ETTGLD + A VE+ +L V G + V + +I+ Sbjct: 14 LPDNLVFLDIETTGLDPEKGANIVEIAMLKVCGG--IEERYESLVNPGLPIPSECSKIHA 71 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 Y+ + G V ++ + N FD V R+ +P Sbjct: 72 IYDDMIKN----SPSFDEIAGNVFSFIGHSVVVCHNAPFDLLFVYRELYLAGVP------ 121 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 V + R D A + D L +A+ +G+ RH A+ D + Sbjct: 122 --VKNIRYIDTLKLARQYFSFD---SNKLGNIADAIGIEAELRHRAMADVLTMFSVAKYI 176 >UniRef50_A9AZA6 DNA polymerase III, epsilon subunit n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AZA6_HERA2 Length = 282 Score = 126 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 52/181 (28%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ D+E+TGLD E+ + + E + V DP A +NG Sbjct: 25 PFVLFDMESTGLDVQIGHRICEMAAMRIQGREIIDRCEF-LVNPQREIDPAAFAVNGISA 83 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + W +V N FD + + +P V Sbjct: 84 EMVANA----PSFGEIWPKVNKLFHEAVLVAHNAYFDIGFLTSELSRIDLPPLETPV--- 136 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + A + L ++A LG H A+ D A F+ L Sbjct: 137 -------IDTLALARR-YITARRYNLTSLATNLG-EKAPSHRAMSDVVALRPVFEHLLDI 187 Query: 183 A 183 Sbjct: 188 L 188 >UniRef50_A8VVX5 DNA polymerase III alpha subunit (Gram-positive type)-like protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VVX5_9BACI Length = 242 Score = 126 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYY 61 V DLETTG + + +G ++ + +E + + G Sbjct: 59 TFTVFDLETTGFFCNLGDEVLAIGATKLNRNRIDFPEQFYEVIEPVKPMSAFVSNLTGMT 118 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A+ + ++ +G+ +FD + + + Sbjct: 119 HEEVTAGL----AFPEAFSKFLEFSKGSILVAHPASFDVQFLKILADRWRLH-------- 166 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A + P + LD + + + RH A+ DA TA F L Sbjct: 167 GYDPLYIDQYQLAKS---LYPRKRNSLDELIKLYQIETSGRHHALADAYMTATVFHHLLD 223 Query: 182 TAAAH 186 A Sbjct: 224 ELDAK 228 >UniRef50_D2EP63 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG (Fragment) n=4 Tax=Streptococcus RepID=D2EP63_9STRE Length = 157 Score = 126 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 17/170 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVDLE T A ++VG++ ++ GE + V D E+ G Sbjct: 5 NDRYVVVDLEATSTG-SKAKIIQVGIVVIENGEII-NQYATDVNPHEPLDSHIKELTGLT 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 +R L + + G++ + ++ F N FD+ ++A Sbjct: 63 DRRLAAA----PEFSQVAGKIFELVKDGIFVAHNVQFDANLLAEFLFFEGYEL------- 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 R + ++ E L + + LG+ + + H+A+ DA A Sbjct: 112 ----RTPRVDTVELAQVLYPQFEKYNLGILCQELGIELEHAHTALSDAQA 157 >UniRef50_Q7VGH4 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7VGH4_HELHP Length = 266 Score = 126 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 19/177 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 L+ VD+ET G +E+G L V GE + F ++ + ++ G Sbjct: 69 QKGNLVFVDIETNGAKPQQCQIIEIGALKVKGGEIIDKFESYVYAD---EVPENITQLTG 125 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + GE + +L + F N FD V + Sbjct: 126 ICQADIAYA----PSIKEVLGEFRAFLGTDVFVAHNVNFDYGFVDYHLRQCGL------- 174 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + +L + L+ L + E LG+ H A DA + F Sbjct: 175 FGLLNPKLCTIELAKKTILS----PRYALGFLNEFLGIRTAVTHRAYADALTSFRVF 227 >UniRef50_C8WHL0 Exonuclease RNase T and DNA polymerase III n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WHL0_EGGLE Length = 367 Score = 125 bits (315), Expect = 6e-28, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 D+ET + +G + D ++ V ++ D + I+G Sbjct: 3 YTFFDVET--PNRRNDRICSIGAVVTDQDGTVVEKKSYLVNPESSFDDINVRIHGIAPVD 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + N FD +++ + V+Y +P Sbjct: 61 VRNAKTFPELWYDSLSAFFPVDG---VVAHNARFDLSVLTKTLVSYDIPSP--------K 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 A + I L V E LG+ + H A DA A F L A Sbjct: 110 MSYACTLDMSKKIDFIGGG---KLPHVCEALGIELERHHQAESDATACMRVFWTLVGMAG 166 >UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WPW0_EGGLE Length = 966 Score = 125 bits (315), Expect = 6e-28, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++V+D ETTG ++ ++ ++ GE + + V + Sbjct: 6 LDHNVVVLDTETTGFSFNHDELTQIAAARMEQGEIVEWFI-TFVNPGKPIPEDVAHLTDI 64 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++R + L A A ++ +++ N FD T R P T Sbjct: 65 HDRDVADAPLP----ADALAKLVEFIGDAKVVAHNAEFDRTFTTRH--PSGYPLLENT-- 116 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + ++ + + L + G P+ H A D AT F +L Sbjct: 117 --------WIDSLDLARIALPRMKSHRLLDLVRAFGAPLS-THRADADVEATCAIFRILL 167 >UniRef50_B2Q2X9 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q2X9_PROST Length = 234 Score = 125 bits (315), Expect = 7e-28, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 14/178 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGY 60 +Q++ +DLETTGLD + + +G++ + + L H V + IN Sbjct: 49 TQQILSIDLETTGLDPEKDRILSIGMVTIADSKILLKSAQHYYVNDNEPVKAETAVINHI 108 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A +G A + +++ +P Sbjct: 109 TPEQLSDGV----SLPHAIASFLHEAKGKCILAHGSAIEHAFLSKALNIKELPLLWFDTL 164 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + K L A+ R +P + H+A+ DA ATA F Sbjct: 165 NIEK-------TLLSHKNI--NRNDFSLSALRSRYQLPDYDAHNALSDAIATAELFLA 213 >UniRef50_D0WQJ6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQJ6_9ACTO Length = 206 Score = 125 bits (315), Expect = 7e-28, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 59/177 (33%), Gaps = 15/177 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL VE+G++ +D V L A+ ++G + Sbjct: 3 YAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSLVNPLRGM--GAVFVHGLTDAD 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A +++ G N FD + + Sbjct: 61 VADA----PTLADLLPQIRGLFSGRALVAHNATFDVGFLNASFARAGY--------GMHV 108 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 R A + K+ + P GL A AER GV RH A+ DA A + Sbjct: 109 PREATVCTMELSKIYLPP-GRHGLAAAAERAGVATAKRHRALADAHTAAGLLRHYLN 164 >UniRef50_Q0BM06 DNA-directed DNA polymerase n=20 Tax=Francisella RepID=Q0BM06_FRATO Length = 238 Score = 125 bits (314), Expect = 8e-28, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 13/182 (7%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M++Q + +D ETTG DY +E G + V H + A+ I+G Sbjct: 9 MSRQ-VFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYKVEAGALAIHG 67 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E+ ++LRG N AFD + + Sbjct: 68 LTNEFLADK----PLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLK----NNKY 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 G + + + + + + LDA+ +R + +R H A+ D+ A + Sbjct: 120 GTLEQNVAKIVDSLDLARKKHP-LQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYL 178 Query: 178 ML 179 + Sbjct: 179 AM 180 >UniRef50_B7GKX3 Exonuclease n=2 Tax=Bacillaceae RepID=B7GKX3_ANOFW Length = 222 Score = 125 bits (314), Expect = 8e-28, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 57/180 (31%), Gaps = 13/180 (7%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 V D ETTG T +E+G + V + H V P +E+ E Sbjct: 29 FTVFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPNRDLPPVIVELTNITE 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + + + F G +FD ++ + M F Sbjct: 89 EKVKHAPTAIEALQQFF-QFVEQKQSVCFVGHYISFDLFVLKHELRREKMKFR------- 140 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D L+ A+ G + RHSAIGDA TA+ F L Sbjct: 141 -KPTFIDTLDLIGFIAPSYDMRD--LERYAQAFGTRMYERHSAIGDALTTAYLFVELLQQ 197 >UniRef50_A5CE47 DNA polymerase III epsilon chain n=2 Tax=Orientia tsutsugamushi RepID=A5CE47_ORITB Length = 222 Score = 125 bits (314), Expect = 8e-28, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 68/185 (36%), Gaps = 19/185 (10%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTG-ESLYFVPHITVEQLAAADPKAMEIN 58 M ++ IV+D ET+GLD+ +E+G + +D+ + H + +A +++ Sbjct: 1 MQRK-IVLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDISKEAYKVH 59 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G L + + E ++ N FD + + + Sbjct: 60 GLSRDFLSDK----PKFREIVDEFLQFIDRAQLIMHNANFDMQFLNSELFR-------IR 108 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCF 176 + + + D A + P E LDA+ + + +R H A+ DA A + Sbjct: 109 KSAIPNTCVIDTLTLARKRF---PKERVNLDALCYKFRIDTSDRHLHGALKDAKLLALVY 165 Query: 177 DMLRH 181 + H Sbjct: 166 GRMMH 170 >UniRef50_C8P6J0 Putative uncharacterized protein n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P6J0_9LACO Length = 224 Score = 125 bits (314), Expect = 9e-28, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 13/184 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +DLET+GL+ TA + +G + G + F + ++ + G + Sbjct: 54 DFVSLDLETSGLNPTTAQIISIGAVKRIAGHTTTFYRLVKLQSGKKLAGDIARLTGLNSQ 113 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E + A ++Q + + G N FD + + + + Sbjct: 114 QLATEGV---AVKEALIDLQSFAKKLPIVGYNLLFDERFLQTAVIRAGI--------VQF 162 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 ++++ D+ Y L + R G+ H+++ DA AT D L Sbjct: 163 NNKMVDVLPYVKTVDKFCD--NYHLATILTRYGIKNEQAHNSLADATATMKLVDKLIKIH 220 Query: 184 AAHL 187 + Sbjct: 221 GFRI 224 >UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2F3_PELTS Length = 937 Score = 125 bits (314), Expect = 9e-28, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 19/164 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K+++V DLETTGLD + +E+GL+ + + + H V K + G Sbjct: 1 MIKEIVVCDLETTGLDPLSDRIIEIGLVRLKDLKIVDI-YHTMVNPGRPLPLKIKNLTGL 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + +V ++ AG N FD +A + F Sbjct: 60 DDSDLASA----PAFSGVREKVLGFIGDAPIAGHNIRFDMGFLAAA---GGISFKNPAY- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 +L + L+++ ERL V RH Sbjct: 112 ----------DTVELARLAVPGLPTYRLESLCERLNVEAAARHR 145 >UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit n=9 Tax=Prevotella RepID=D1PV56_9BACT Length = 287 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 54/187 (28%), Gaps = 22/187 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + K LI+ DLETTGLD T +++ + VD + + V P E+ Sbjct: 5 LTKPLIIFDLETTGLDLATDRIIQISYIKVDPQGNEERKS-LFVNPEKPIPPFVQELTHI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + +Q+ G FAG N FD ++A + + + F Sbjct: 64 TDDMVKDA----PTFKQIAKSLQETFAGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFQR- 118 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG----VPVVNRHSAIGDAAATAFC 175 + E L A H A D AT Sbjct: 119 -----------CRLIDAQNIFHKMEPRNLAAAYRFYTGNKMEDDFQAHRADEDTEATYRV 167 Query: 176 FDMLRHT 182 Sbjct: 168 LQGQLDK 174 >UniRef50_C4LI81 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI81_CORK4 Length = 555 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 44/181 (24%), Gaps = 16/181 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEING 59 I D+ET + + G++ G+ + P I+G Sbjct: 220 PPSFIAFDVET--ANEANGSICQFGVVVYHEGKEAESHTWLCQPPSAWPDFTPATTAIHG 277 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + E + ++ N FD + + +T Sbjct: 278 ITPDKVANEPSCHDRLEQLAALLRK--ENLPIVAHNAKFDMVALRDAARAEKVDIPHITF 335 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 Y + L VA+ G + H A+ DA A L Sbjct: 336 A----------CTYLLARALHPELPNYKLTTVAQSAGSEAFHHHDALADARACGEIMLSL 385 Query: 180 R 180 Sbjct: 386 C 386 >UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIP6_9BACT Length = 261 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 19/184 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + ++ DLETTGL+ +E+ + V V +A EI G Sbjct: 5 LQRPIVFFDLETTGLNPTEDRIIEICCIKVHPDGKRDIKTR-RVNPEKPISSEASEITGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTV 119 + + E + + G +G N FD ++ + + F Sbjct: 64 TDEDVKDE----PTFKQMAKGIYKFFEGCDISGYNIMRFDLRVLTEEFKRAGISFDASAH 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDM 178 V R+ E L+A + H+A D AT + Sbjct: 120 DLVDVQRI------------FHKKEPRTLEAALRFYCKKDLEGAHAAENDVIATIDVLEG 167 Query: 179 LRHT 182 Sbjct: 168 QLDM 171 >UniRef50_B6XU67 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XU67_9BIFI Length = 196 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 52/183 (28%), Gaps = 14/183 (7%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 IV+D ETTGL A +E+G + + E + + + + G + Sbjct: 21 DFIVIDTETTGLSVRKGARLIEIGAVKIHNDELVD-EFDQLINPFEHIPSRITGLTGIDD 79 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + E W N +FD + + + + Sbjct: 80 GMLLGK----PDVREVMDEFARWCSDTAVVMAHNASFDMSFLDNA-----VQLAYADRDA 130 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + H D + + + + + H A+ DA + +R Sbjct: 131 RFAHHFVDTLDL--SRRLHPEKRTHKVSTLIVDYHIADMEEHRALSDAKQEWMLYRAMRD 188 Query: 182 TAA 184 A Sbjct: 189 EAE 191 >UniRef50_B0ADG9 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ADG9_9CLOT Length = 174 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 26/188 (13%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDT------GESLYFVPHITVEQLAAADPKAME 56 + IVVDLETTGLD + G ++ + V+ Sbjct: 7 DKYIVVDLETTGLDPFS------GCEIIEIGITEIVNNKIGRNYSRLVKPKGIIPSHITN 60 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 I + + + ++ T N FD + + Sbjct: 61 ITSITNDMVEDA----ESLETVLPNFRKYVGDTTIIAHNAKFDLKFLNYYLDLLGLEK-- 114 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 ++ + L K + + L+ + + H A D ATA F Sbjct: 115 ------INNHICTLEMLKRCKS--YKGKNKKLETACNYYNIVNEHAHRANSDTLATAKLF 166 Query: 177 DMLRHTAA 184 ++ Sbjct: 167 LTIKDEVE 174 >UniRef50_B5JQE7 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQE7_9BACT Length = 220 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 18/186 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGES--LYFVPHITVEQLAAADPKAMEINGY 60 ++L+ DLETTGL Y ++ + + G + V ++ Sbjct: 5 RELVAFDLETTGLRYKQEEITQIAGVRL-GGVIMNVEDSFCTYVNPGKPIPENIQKLTRV 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTV 119 + + A DW+ T G + FD + + + + Sbjct: 64 RDEDVKDAPKPL----EALQAFSDWVGDATLFGHDIYRFDFNFIRKYARQEGVETRTV-- 117 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVVNRHSAIGDAAATAFCFD 177 R D LD +AERL G+ + RH A DA A + Sbjct: 118 ------RFIDTMDIFEVMWPDFSRLRNSLDDIAERLSAGLSSMRRHDAQSDAILLAHIYQ 171 Query: 178 MLRHTA 183 ++ Sbjct: 172 RIQDHP 177 >UniRef50_Q47S15 Exonuclease n=3 Tax=Nocardiopsaceae RepID=Q47S15_THEFY Length = 516 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 19/186 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V+DLETTGL+ A E+ ++ + ++ V ++ A +G + Sbjct: 20 TYAVLDLETTGLNPKRGARVCEIAVVRMRGDGTVLDEYSTLVNPGSSIRNSA--FHGITD 77 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + T G++ +L G G F+ +A + +P + Sbjct: 78 TWVK----TAPSFDQVAGDLLAYLDGAIVVGHKLDFEEKFLAAEFARLGVPLTG------ 127 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLRH 181 + L A + +D L + L G HSA+GDA + A L + Sbjct: 128 ----IPGLCTLVAARYQLDRYG-YRLAHLHHLLTGRWPTAEHSALGDARSLAAVLTELIN 182 Query: 182 TAAAHL 187 A L Sbjct: 183 AAPQPL 188 >UniRef50_A3ZH56 DNA polymerase III n=1 Tax=Campylobacter jejuni subsp. jejuni 84-25 RepID=A3ZH56_CAMJE Length = 326 Score = 124 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 53/181 (29%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K +V+DLETTG D +E+ L + E + + +++ E G Sbjct: 31 PKSYVVIDLETTGFDPKCNEILEIVALRYENNEKI--AEFSKLIKVSFLPSFITEFTGIN 88 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + + E D+L+ + N FD + + Y Sbjct: 89 EDMIKNCN----DISQTLKEFDDFLKSGDILVAHNAHFDINFLYDNFMCYLNKPFSFDF- 143 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + KL L + + + N H D T C L+ Sbjct: 144 ---------VDTMRLSKLINQELAHHRLKDLCNQYNICYENAHRGEKDCELTHLCLMELK 194 Query: 181 H 181 Sbjct: 195 K 195 >UniRef50_B2GAN1 DNA-directed DNA polymerase III epsilon subunit n=49 Tax=Lactobacillales RepID=B2GAN1_LACF3 Length = 179 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 18/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D ET + + V + + + + +++G +ER Sbjct: 2 NFIAMDFET--ASAKRFSACSLAITIVRNSQIQD-EFYTLINPQTPFFWRNTQVHGIHER 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + W +Q++ + N FD++++ + + + Sbjct: 59 DVKDA----PTFPEVWEHIQEFFTPDKLVIAHNATFDNSVLKNTLLHFEIEPP------- 107 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + L+ + ++L + + + H+A+ DA A A + Sbjct: 108 ---VYQTLDTLKTSRQLFPAFPNHKLNTICDQLNIDLHHHHNALDDAHACANILLYQANH 164 Query: 183 AA 184 Sbjct: 165 FG 166 >UniRef50_D1C533 Exonuclease RNase T and DNA polymerase III n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C533_SPHTD Length = 197 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 15/186 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ +D ETTGLD A VE+ +++ L V L P+ I+G + Sbjct: 22 RDVLFLDTETTGLD-GQAEIVEIAVVDAQGTVLLD----TLVRPLRPIPPEVQAIHGITD 76 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R + + A ++ R N AFD ++A+ + +P Sbjct: 77 RMVAGAPRWPEVHAELVRLFRERPRA---VVYNAAFDRRVIAQTAQQHCLPPPTAE---- 129 Query: 123 WHHRLADLAAYAAGKLNI-DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 WH + AAYA + + LD A LG+P H A+GDA + Sbjct: 130 WHCAMLRYAAYAGERHPVTGKYRWHRLDRAAAALGIPR-PTHRALGDALVCRGVVAAMAG 188 Query: 182 TAAAHL 187 L Sbjct: 189 -LGGRL 193 >UniRef50_A5UUT9 DNA polymerase III, epsilon subunit n=4 Tax=Chloroflexaceae RepID=A5UUT9_ROSS1 Length = 233 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 59/186 (31%), Gaps = 8/186 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLA--AADPKAMEINGY 60 V+D+ETTGL+ + +GL+++D G + V +P+A+ ++G Sbjct: 37 PYSVIDVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGL 96 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + L G D + + Sbjct: 97 LPQDVEQA----PPPGDVLPVLLRRLTGRVLVVHVADIDIGFLRQALRRLYQVDPRGPAI 152 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D L A+AE G+PV H+A+ DA TA F Sbjct: 153 DTARLAWH-FQRNQRLIDGADQEPALQLRALAESAGLPVYAEHNALNDALTTAQVFLAQI 211 Query: 181 HTAAAH 186 + + Sbjct: 212 NAMQPN 217 >UniRef50_B9L5N4 DNA polymerase III PolC-type n=1 Tax=Nautilia profundicola AmH RepID=B9L5N4_NAUPA Length = 255 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVD+E + +E+G + + + + + + G + Sbjct: 65 EYCVVDIEVNNSKPNIGQVIEIGAVKIKNLKIVD--TFEFLIYAKDVPKYVERVTGINQE 122 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L EA + + +L + F FD +A Q ++ Sbjct: 123 MLKNEASQ----KEILRKFRLFLGESVFVAHAADFDYNFLAHQFEKENLGEILNRF---- 174 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + E GL + E L +P H A+GDA TA F M Sbjct: 175 ------LCTLTLSQKTL-EAERYGLKYLMEELKLPEETHHRALGDAKTTARIFLMCLENL 227 Query: 184 AAHL 187 ++ Sbjct: 228 PDNI 231 >UniRef50_P96171 DNA for Na+/glucose symporter, n=1 Tax=Vibrio parahaemolyticus RepID=P96171_VIBPA Length = 234 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 63/179 (35%), Gaps = 14/179 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ETTG + + + +G + + L H+ + ++++++ Sbjct: 49 LVLDFETTGFNPEVDRVISIGWVEIRNSNIRLNSARHVFINHAIDICHESVKVHHIRPET 108 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ--RVTYSMPFSPLTVGRV 122 L+ ++E A+ ++ D + G + + + ++ + Sbjct: 109 LHVSGISE---QAAFTQLLDVIAGKILVAHGCIMEQRFLEQYIKMKYQNLKLPLIW---- 161 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L L L ++ + L +P H+A+ DA ATA + + Sbjct: 162 ----LDTLKIEQYRTQLRPTRSDWRLSSIRKELNLPTYQAHNALNDAIATAELYLAQIN 216 >UniRef50_O29290 DNA polymerase III, subunit epsilon (DnaQ) n=1 Tax=Archaeoglobus fulgidus RepID=O29290_ARCFU Length = 205 Score = 124 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 11/181 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +DLETTGL+ + +G + + L + + + ++M+ +G Sbjct: 10 FLSIDLETTGLNQKKDEIIAIGAVPIIGTRILAGESYYRLLRPEKFKHESMKFHGLDPAR 69 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L T + EV D LRG G D + R Sbjct: 70 LK----TAHDFSEIAEEVADLLRGKVLVGYAIELDYGFLKRALKREGYK------VENKR 119 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD-MLRHTA 183 + D L P LD +A++ V V RH+A+ DA TA F L Sbjct: 120 IDVIDFEKAVCYILGERPVGEMTLDNLAKKYRVEVSYRHNALADAFITAQIFQVQLLKIL 179 Query: 184 A 184 Sbjct: 180 K 180 >UniRef50_C9ZG17 Putative DNA polymerase III, epsilon chain (EC 2.7.7.7) n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZG17_STRSW Length = 613 Score = 124 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 48/174 (27%), Gaps = 16/174 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VD+ET+GL + + +L +D + + P + ++G Sbjct: 18 DWALVDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTLLNPDCDPGP--VHVHGLTAD 75 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L +V L N FD +A + R W Sbjct: 76 RLAGA----PAFEEIAPQVGALLSSRVLVAHNAQFDYDFLAHEFAQ----------VRSW 121 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L A +L T L +A GV H A D + Sbjct: 122 APVSRRLCTLALNRLVGPATPDLKLGTLAAHYGVRQEKAHDAQDDVRVLSGILR 175 >UniRef50_D1BFD5 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BFD5_SANKS Length = 611 Score = 124 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 52/174 (29%), Gaps = 16/174 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+GL ++V + V+ +L ++ DP + ++G Sbjct: 22 YAVVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPG--VDPGPVHVHGLTRER 79 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L Q G + + +R N FD +A + P S Sbjct: 80 LAGA----PQYQDVAGTLDELVRDRVLVAHNARFDWGFLAAESDRARAPLSVD------- 128 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L A + P L VA GV H A D Sbjct: 129 ---RRLCTLALSRRLDLPVSDLRLATVAAHWGVQQRRAHDAEDDVRVLVEVLRH 179 >UniRef50_C8X5R2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5R2_DESRD Length = 233 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 6/183 (3%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D E TGL + +G + ++ T A I+ + Sbjct: 36 FCVLDTELTGLR-RRHEIISIGAVRIEHLALKPLDRFYTEVCPKAWTKTGTLIHRISPQQ 94 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTVGRVW 123 + E+ +L + G N A D + + + P + + Sbjct: 95 CQDA----PKIGKVLPELIAYLGTSLLIGHNIALDLQFLQKACKKHLGHPLVHPCIDTLR 150 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 R+ + + + + L +A+ G+P H+A DA TA+ F L H Sbjct: 151 LARVYEESRWESYYDRFTLRVSYQLQELAQAYGLPCFPAHNAASDALQTAYLFVYLVHKL 210 Query: 184 AAH 186 Sbjct: 211 RET 213 >UniRef50_Q2KXB5 Putative exonuclease n=4 Tax=Bordetella RepID=Q2KXB5_BORA1 Length = 193 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 46/164 (28%), Gaps = 15/164 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V DLETTGL +E + VDT + V + G ++ Sbjct: 28 FVVADLETTGLSAHACEILEFAAVRVDTEGQIASEYSQLVRINGRVPSFIARLTGISQQE 87 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A+ D++ N +FD+ + F Sbjct: 88 V---IRDGKPIDEAFRAFCDFVGTAPVFFHNASFDTRFLRATASRCGQAFDN-------- 136 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + L +AE LG H A+ D Sbjct: 137 ---DTHCTLLLARRAWPELRSHKLGMLAEHLG-AATPTHRALAD 176 >UniRef50_A0L6G9 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G9_MAGSM Length = 230 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 8/176 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 + + +DLETTGLD + + + VG + V G + H V+ A + ++G + Sbjct: 43 KFLALDLETTGLDPNKSEILSVGFVPVYNGRVVLSGCAHYLVQPEGAISHASAVVHGITD 102 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +V V L+G+ + + + + + Sbjct: 103 DHAEAYG---EPLSVVLPRVLKALKGHVLLAHHCPIELNFIRKACQRLYGEMPLIPAVDT 159 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + L R +P H A+ DA A F Sbjct: 160 ----LVIERQIMDRRSGTYEPGALRLFTARTRYNLPRYAAHDALMDAIACGELFLA 211 >UniRef50_A8ES54 DNA polymerase III, epsilon subunit n=4 Tax=Epsilonproteobacteria RepID=A8ES54_ARCB4 Length = 203 Score = 123 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 72/183 (39%), Gaps = 16/183 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 + + +D ETTGL+ + +G + + + L I ++ + ++++++ Sbjct: 29 NEYVSLDCETTGLNPKKDEILSIGAVLIKDNKILMRKTFNIFLKPSKDINIESIKVHHLR 88 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLT 118 + L E + D++ G FD I+++ Y +P +P+ Sbjct: 89 QIDLNDALEPEIGIYQ----LLDFIGSRPIVGYYIEFDMAIISKYTKKYLGIKLPNTPIE 144 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 V +++ + Y D + + L +PV+ +H A+ DA T+ F Sbjct: 145 VSSIYYDSRKSTSNY--------GFIDLKFDTIMKNLNIPVLGKHDALNDAIMTSMIFLK 196 Query: 179 LRH 181 L+ Sbjct: 197 LKQ 199 >UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface antigen n=1 Tax=Campylobacter rectus RM3267 RepID=B9D3Q4_WOLRE Length = 289 Score = 123 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 59/182 (32%), Gaps = 19/182 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+G ++ +E+G L + GE + T E+ G Sbjct: 73 FCVVDIETSG-GINSGQIIEIGALKLQNGEIIGK--FETFVHAPYVPENISELTGITAEH 129 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L A + + +L + F N FD + G + + Sbjct: 130 LKNA----PNLAFVMEKFKVFLGQSVFVAHNVRFDYGFIGATLEALG-------YGELLN 178 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 HRL + + GL + E LG+ H A+ DA A A F Sbjct: 179 HRLCTIDLARRTIAS----PKYGLGTLKEILGINNA-HHRALSDAIAAAEIFKYSLQKLP 233 Query: 185 AH 186 + Sbjct: 234 SE 235 >UniRef50_B9CLN3 Putative exonuclease, RNase T and DNA polymerase III n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLN3_9ACTN Length = 251 Score = 123 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A++++ +D ETTGLD +++ ++ D F I P A EING Sbjct: 20 AEKILCIDTETTGLDPRKDEIIQLSMI--DGHGKSIFESLICP-PTRKRWPNAQEINGIT 76 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + +VQ+ + G N FD +++ + FS Sbjct: 77 PKMVKGK----PELEEVADQVQEAINAADLIVGYNLPFDISMMEAE----GFDFSDKEQY 128 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +++ K + L A+ G+ H A DA AT F + Sbjct: 129 DLMEDYAQVFGRWSSAKDDYL---WTKLTTAAKHYGIKFA-AHDAGEDARATIKLFYAML 184 Query: 181 HTAA 184 Sbjct: 185 SDPE 188 >UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0X6_DEIDV Length = 1683 Score = 123 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 61/183 (33%), Gaps = 13/183 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETT +D A +EV + V+ G + + E+ G + Sbjct: 9 YVILDTETTSVDRAEARLLEVAAVRVEDGRICD--TLQLLVSGERIPREVAELTGIRQEE 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRVW 123 L R+ +V ++ G N FD ++ R S+ F V Sbjct: 67 LDRDGQPLP---DVLKQVLAFMGDLPVVGHNAQGFDVPLLKRLCREQSLKFQVPFVFDTL 123 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLRHT 182 AA P E GL+ + R G + H + D AAT+ + Sbjct: 124 LLAPLAFAAVV------PPVEGYGLEGLHARFCGDVHDDAHRTLADCAATSRLLAYMVER 177 Query: 183 AAA 185 A Sbjct: 178 LRA 180 >UniRef50_C6NVW4 DNA polymerase III epsilon subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVW4_9GAMM Length = 475 Score = 123 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 56/187 (29%), Gaps = 16/187 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L +DLE TG + +EVG++ V + P + G Sbjct: 5 LDTTLAFIDLENTGGHLERDRIIEVGIILVAPAGEPEV-WSTLINPEIRLSPAISTLTGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A +++ L G + D + ++ F+ Sbjct: 64 DPADLAHA----PTFAQVAEPLREKLAGRLLIAHDARTDLAFLRQEWRRLGQVFTA---- 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + GLDA+ ERL + RH A+ DA A L Sbjct: 116 -------DVLCTLRLSRSLFPDEKRHGLDAIIERLQLHSAGRHRALTDARTVAIFLARLY 168 Query: 181 HTAAAHL 187 A L Sbjct: 169 SEQPARL 175 >UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Corynebacterium RepID=C2BLZ4_9CORY Length = 221 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 12/175 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG + +E+ + D+ + H + A K I+G Sbjct: 21 FAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTLLNPDGKAI-KNSHIHGITNDM 79 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + +T + +G+ ++ G N FDS ++ + + + Sbjct: 80 V----VTAPTFSEVYGDFTSYIDGMQLFAHNAPFDSKMIVAEVDRMTGGDNDGDEFF--- 132 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 D A L L A+ +RLG+ + H+A+ DA +T L Sbjct: 133 -PFIDTIDLAKQML---DCGPYNLPALLDRLGLDNPDAHAAVADATSTVNMLHAL 183 >UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHF7_9ACTN Length = 1045 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 56/180 (31%), Gaps = 18/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + ++V+D ETTG + ++ + G + + V + + Sbjct: 53 LDEDVVVLDTETTGFSQNHDELTQIAAARMKQGRIVEW-FVTFVNPGKPIPEEVARLTDI 111 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + A ++ ++ + N AFD + + + + Sbjct: 112 HDEDVADA----PSPDDARIQLAAFVGDSCIVAHNAAFDKGFCTKSQGGAPLSDN----- 162 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + ++ + + L + + PV H A D A + ++ Sbjct: 163 -------LWIDSLDLARIALPRLKSHRLIDIVKAFDAPVS-THRADADVEALCAAYRIML 214 >UniRef50_A1TXA3 Exonuclease, RNase T and DNA polymerase III n=8 Tax=Gammaproteobacteria RepID=A1TXA3_MARAV Length = 240 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 52/181 (28%), Gaps = 8/181 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 L+ +D ETTGL+ D V +GL+ H V ++ I+G Sbjct: 49 PLVALDFETTGLEADQHSIVSIGLVPFTLTGIQLGQCWHQVVRPRLPLHKTSVTIHGITH 108 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLTV 119 + + + L G + + + F + Sbjct: 109 SEIENA----PDLEDVLDPLFEHLNGRIPVVHYRNIERPFLNTALQWRLNEQLRFPVIDT 164 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + H + +L L R G+P H+A+ DA ATA Sbjct: 165 MAIEAHLHPNRNPSRWQQLMGKKPISIRLADSRLRYGLPHYASHNALIDAIATAELLQAQ 224 Query: 180 R 180 Sbjct: 225 V 225 >UniRef50_C2JRY7 DNA polymerase III, epsilon subunit n=3 Tax=Enterococcus faecalis RepID=C2JRY7_ENTFA Length = 289 Score = 122 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 55/181 (30%), Gaps = 21/181 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ I D+ETTGLD+ +++ G + T+ + ++ G Sbjct: 6 KEFIAFDIETTGLDFHQDAVIQISAARYVDGIEVD--YFDTLVNSDYIPDEITKLTGITN 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 + + D+L G N +FD + Sbjct: 64 DQVLNA----PTLDEVMPYLFDYLGDTILVGHNIKSFDFPFLKA-----------KGYNI 108 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 H + D +AA + L + G+ + H+A+ D +A F L Sbjct: 109 AEGHEIYDTRYFAATRK--HGAVNNQLTTLKLLFGIDAI-SHNALNDVRISAIVFMELLK 165 Query: 182 T 182 Sbjct: 166 I 166 >UniRef50_Q7UJ56 Probable DNA polymerase III polC-type n=1 Tax=Rhodopirellula baltica RepID=Q7UJ56_RHOBA Length = 355 Score = 122 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 17/167 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +D ET + ++ + V GE + + + P ++I+G Sbjct: 2 DFTAIDFET--ATRRSDSACQLAAVRVRGGEIVDSACWLIRPRPFVFSPANIQIHGITPG 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E + W E+Q L + N +FD ++ ++ P Sbjct: 60 MVREE----PEFGELWPEIQSTLGDDCLIAHNASFDLGVLMACLESHDHPVP-------- 107 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 + A + GL +++ LG+ H A+ D+ Sbjct: 108 --DMQYSCTRAIARRTWPQQPRFGLKPLSDWLGIRF-RHHDALEDSI 151 >UniRef50_Q3SMK3 Exonuclease n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SMK3_THIDA Length = 233 Score = 122 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 13/184 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 + +VVD+ET+GLD + +G + V G+ V Q K + I+G Sbjct: 41 RCVVVDVETSGLDPRRDRLIAIGAVAVSRGKVQLGDSLEIVLQQDTVSEKGNILIHGIG- 99 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R + A A ++L + + AFD+ ++ R +G Sbjct: 100 GTAQRAGVPP---ADALLAFLEYLGKDPLVAFHVAFDAPMIRRAMK--------AFLGLD 148 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + H ADLA A LD + RH+A+ DA +TA LR Sbjct: 149 FSHAWADLAYVAPALYPRLARRRRSLDDWMSEFKIGNYARHNALADALSTAQLLLALRKA 208 Query: 183 AAAH 186 A Sbjct: 209 LDAR 212 >UniRef50_D1BL33 Exonuclease RNase T and DNA polymerase III n=3 Tax=Veillonella RepID=D1BL33_VEIPT Length = 209 Score = 122 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 54/182 (29%), Gaps = 18/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ET + + ++ V G+ + + D + +EI+G + Sbjct: 3 DFVALDFET--ANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPK 60 Query: 64 GLYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E W + + +GN N FD ++ Y +P+ L Sbjct: 61 DVLHEK----TFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYA-- 114 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L+ +A +GV H A+ DA A Sbjct: 115 --------CTVKLSRAVWPDLVNHKLNTMAAYIGVEFK-HHYALDDAETCAKVVLEAAKL 165 Query: 183 AA 184 Sbjct: 166 KG 167 >UniRef50_Q482N7 DNA polymerase III, epsilon subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q482N7_COLP3 Length = 256 Score = 122 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 16/190 (8%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAA------ADPKAM 55 K+LI++D ETTG++ + VE+G + + + H ++ L + + + Sbjct: 14 KRLIILDTETTGINPREGHRIVEIGCVEMINRQLTGRTYHAYIKPLDQRGQVFQMEQEVI 73 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 I+G L + + E D++RG N FD + + ++ Sbjct: 74 NIHGLTNEFLADK----PIFSQVVHEFIDFIRGAELVIHNSKFDVGFMDHEFSLFNSMGR 129 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-VVNR--HSAIGDAAAT 172 + K + + LD +A V +V+R H A+ DA Sbjct: 130 SQDKVPMTEDICTITDTLKVSKDELGSPK--TLDYLARFYRVDKLVDRTYHGALIDAQLL 187 Query: 173 AFCFDMLRHT 182 A+ + + Sbjct: 188 AYVYIEMTRK 197 >UniRef50_A9NGM6 DNA polymerase III, epsilon subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGM6_ACHLI Length = 227 Score = 122 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 57/183 (31%), Gaps = 15/183 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLL---NVDTGESLYFVPHITVEQLAAADPKAMEING 59 K+++V D ETTGL +EVG + + + ++Q + G Sbjct: 6 KKILVFDFETTGLTPKRDKVIEVGAVLLEKIGDTYEIVQEIDYLIKQQTPITDFISNLTG 65 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L R+ + E+ + D N AFD ++ TY V Sbjct: 66 ITNEMLARDGVEEEYAFRQLDNLID--EDTLLVAYNLAFDIGFLSALYQTY--------V 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + L A K L+ R + H A DA AT D L Sbjct: 116 AHNYKIQNDILDCMAVYKDRYP--YPHKLENAVARFELSNNQAHRASEDAKATFKVLDCL 173 Query: 180 RHT 182 Sbjct: 174 ASE 176 >UniRef50_A4ASW0 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4ASW0_9FLAO Length = 222 Score = 122 bits (307), Expect = 5e-27, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 65/183 (35%), Gaps = 11/183 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + IV D ETTGLD + +G ++V +G+ + +++EI+G Sbjct: 33 RFIVFDTETTGLDIVNDRILSIGAISVFSGKLDIGDSLEIYLKQKIFKAESVEIHGI--- 89 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ + A ++ + AFD ++ +P ++ Sbjct: 90 -LKEGSIEKHTEEEAIISFLKYIENGILVAHHAAFDIAMINAGLRRMGLP-------KLK 141 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L + L D ++ LD ++ +RH++ GDA T + Sbjct: 142 NKVLDTGVLFKKTTLCEDKNKIYSLDYLSGIFKFRNHDRHTSSGDAFLTGMILLKILSNL 201 Query: 184 AAH 186 Sbjct: 202 KGK 204 >UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKT0_9SPHI Length = 245 Score = 122 bits (307), Expect = 5e-27, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 21/177 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNV-DTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K ++ DLETTG D V++ ++ + G + + P+ +++G Sbjct: 5 KPIVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEKER--LINPTIPIPPEVTKVHGVS 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 + + + +++RG AG N FD ++ + + F V Sbjct: 63 DEMVKDA----PTFHQVAKSLFEFIRGCDLAGYNHLNFDMPLLIEEFARAGVVFPEPDVQ 118 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCF 176 + L A + + N H+A+ D AT F Sbjct: 119 YIDV------------MKVYYHFHPRTLSAAYQLYCHKELENAHNAMADTQATLEIF 163 >UniRef50_Q47ME2 Exonuclease n=1 Tax=Thermobifida fusca YX RepID=Q47ME2_THEFY Length = 313 Score = 122 bits (307), Expect = 5e-27, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 20/186 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + VVD+ETTGL + A E+ ++ + ++ V+ + E +G + Sbjct: 30 EYAVVDVETTGLRPEGGARVCEIAVVRMRGDGTVLREFTTLVDPRIKVTGQ--EFHGIAQ 87 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A E+ G G N F++ + + V +P Sbjct: 88 GDVVGA----PRAAELVAELCALFSGAVVVGHNLDFENAFLTSEFVPAGLPDGLPG---- 139 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-VVNRHSAIGDAAATAFCFDMLRH 181 L + + E L + LG +H+A+GDA A A L H Sbjct: 140 -------LCTLRTLRSQVH-LERYSLARASHALGGDWPTGQHTALGDARACAQLLAELLH 191 Query: 182 TAAAHL 187 A L Sbjct: 192 NAPGPL 197 >UniRef50_Q1QYX2 Exonuclease n=2 Tax=Gammaproteobacteria RepID=Q1QYX2_CHRSD Length = 241 Score = 122 bits (307), Expect = 5e-27, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 53/184 (28%), Gaps = 8/184 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYE 62 ++ +D+ETTGLD V +GL+ D + V +++ + Sbjct: 50 PMMAMDMETTGLDEQRHAIVSIGLVPFDLRRIRMAQRRYWIVRPPRPLSERSITFHHITH 109 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLTV 119 + + E+ + + G+ + T + + F + Sbjct: 110 TEIEQA----PDLDEILDELLEAMAGHVMVVHYRHIERTFLNAAVKARRGEGIHFPVIDT 165 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + P L R G+P H A+ DA ATA Sbjct: 166 MSLEARLHRQPLWARFRRWMGRPPASIRLPDSRTRYGLPPYQAHHALIDALATAELLQAQ 225 Query: 180 RHTA 183 Sbjct: 226 IAHH 229 >UniRef50_B8HW82 UvrD/REP helicase n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HW82_CYAP4 Length = 829 Score = 122 bits (306), Expect = 7e-27, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 16/180 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L+V D+ETTG +E+ + ++ G+ + + +++GY + Sbjct: 460 RLVVFDVETTGFSGAADEVIELAAIALEHGQI--REEFNRYIRNTVPVGETQQVHGYSDD 517 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + E ++ +G G N FD +V + F Sbjct: 518 FLATHGQPAAT---VFREFCEFSQGAVLVGHNLGFDIKMVTAHARRVGIEFPS------- 567 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 R D A +E L +A L + H A D T + + Sbjct: 568 -PRWEDTLNLA---HRFIQSENYKLATLASSLNLSATPTHRASDDTRTTVALLEAILPLL 623 >UniRef50_B3XRZ2 DNA polymerase III, epsilon subunit n=1 Tax=Lactobacillus reuteri 100-23 RepID=B3XRZ2_LACRE Length = 283 Score = 122 bits (306), Expect = 7e-27, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 20/177 (11%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VD ETTGL +++ + + + + + + A +N E Sbjct: 15 YVSVDTETTGLYPMYGDKIIQLSAIKYIDDKLVD-TFDTLINPDGS-NNNAKSVNNISES 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + G+ +++ + G N +FD + + + + Sbjct: 73 SLKNQ----PTFDEVIGDFVNFVEDLPWVGHNLSFDFSFLKSE----------ELKIASF 118 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D A + L +A++ + N H+++ DA A + LR Sbjct: 119 KKNSVDTLQIARSI---YGNKGNKLQQLAKKFNIDYKNLHNSLYDAQIAASLYQHLR 172 >UniRef50_D1C750 Exonuclease RNase T and DNA polymerase III n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C750_SPHTD Length = 335 Score = 122 bits (306), Expect = 7e-27, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 15/186 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +D ETTGL D A V++ +++ G L V+ +A ++G Sbjct: 22 DDVVYLDTETTGLGPD-AEIVDIAVVD-QAGRVLLNS---LVQPRNPIPAEATRVHGITN 76 Query: 63 RGLYREALTEQQTAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + E+ T N A+D ++++ Y + Sbjct: 77 KMVMNA----PEWPEVYQELARIIQDYPTLIIYNAAYDRRLISQTCRRYGISVPRAD--- 129 Query: 122 VWHHRLADLAAYA-AGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 W + + AAY L+ A G P+ H A+ DA A + Sbjct: 130 -WQCAMLNYAAYRGEWNARYGNHRWHTLEKAAIETGAPMPPTHRALDDAQACRHVVLSMA 188 Query: 181 HTAAAH 186 A A Sbjct: 189 GVATAR 194 >UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma RepID=DPO3_MYCGE Length = 1451 Score = 122 bits (306), Expect = 7e-27, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 48/185 (25%), Gaps = 18/185 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D+ETTGL +E + + + EI + Sbjct: 415 TFVIFDIETTGLHGRYDDVIEFSARKIKNNSEIDHQQFFL-KIDKPIPKTITEITKITDE 473 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRV 122 L +++++L N FD + Q Y++ + Sbjct: 474 MLEGGIDQ----QQGLEKIRNYLDDCVMVAHNGINFDLPFLQTQFEKYNIKP-------L 522 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLR 180 + + L L + +L + + H A D A F + Sbjct: 523 TNPLIDTLC---LSWALNPLFSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVFFYFK 579 Query: 181 HTAAA 185 Sbjct: 580 KQLKE 584 >UniRef50_A3Q8X5 Exonuclease, RNase T and DNA polymerase III n=6 Tax=Gammaproteobacteria RepID=A3Q8X5_SHELP Length = 239 Score = 122 bits (306), Expect = 8e-27, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 8/184 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 +L+ +D ETTGL+ D V +G + L H TV +++ I+G Sbjct: 48 ELLAMDFETTGLNVDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPREQLAEESVIIHGITH 107 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLTV 119 + + + +V + + G A + + R + + F + Sbjct: 108 SDILDA----PDLSAIFEQVLEQMAGKIMVVHYQAIERLFLERALIRRIHQGIEFPLIDT 163 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + +L D L R G+P H+A+ DA ATA Sbjct: 164 MALESEIQKRQHGGLLQRLKGDKPGSVRLGQSRSRYGLPSYPPHNALTDAIATAELLQAQ 223 Query: 180 RHTA 183 Sbjct: 224 IAHH 227 >UniRef50_D0IFC0 DNA polymerase III epsilon subunit n=1 Tax=Vibrio sp. RC586 RepID=D0IFC0_9VIBR Length = 233 Score = 122 bits (306), Expect = 8e-27, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 9/179 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 L+ +D ETTGL+ + +GL+ +T + V+ + ++ I+G Sbjct: 43 PLVALDFETTGLNAQQDDILSIGLVPFNTQRIALKQARYWLVKPSRPLEEDSVVIHGITH 102 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPLTV 119 L E + + + RG + + + ++ F + Sbjct: 103 TELKHAQEPEVVFSELFDAL----RGKIVVAHFRHIEREFLRQTTLKLWEEAVEFPIIDT 158 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + +L P L R G+P + H A+ DA ATA F Sbjct: 159 LEIEL-SVQNTQRSLWQRLLRSPIPSVRLGQSRLRYGLPAYSPHQALTDAIATAELFQA 216 >UniRef50_A6D4K1 DNA polymerase III subunit epsilon n=1 Tax=Vibrio shilonii AK1 RepID=A6D4K1_9VIBR Length = 176 Score = 121 bits (305), Expect = 9e-27, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 10/175 (5%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYERGLY 66 +D ETT LD A V + + + + + + +++I+ L Sbjct: 1 MDCETTSLDPSVAEIVTIAATKIIDNRIITSDPFEVRLSAPKSLGEDSVKIHHITHDELK 60 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 A + +++ G + +D I+ R + P + V Sbjct: 61 HGI----SEKQAMSALLNFIGNRPLVGYHIRYDKKILDRAAKKHLGFPLPNELIEVSQ-- 114 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + KL + L+A+ L +P ++H A+ DA A A + L Sbjct: 115 ---IYNDKLLKLLPNGYFDLSLEAICRHLQIPNYHKHDALEDAKAAAMVYLKLTR 166 >UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine microorganism HF4000_001N02 RepID=B3T077_9ZZZZ Length = 299 Score = 121 bits (305), Expect = 9e-27, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 58/187 (31%), Gaps = 20/187 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLL--NVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++ DLETTGLD V+ L+ +VD V+ A I+G Sbjct: 38 RVLGFDLETTGLDARKDRIVQYALIGSDVDGSHINLAS---LVDPRRGIPTAASRIHGIS 94 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVG 120 E + G + + + G N FD + + + + Sbjct: 95 EEDVRGVG----SFETHVGAISELIEDAVIVGHNISNFDWRFLELECMRAGVETPIP--- 147 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + D + A L + R + + HSA DA A+ + Sbjct: 148 ----RAIVDTYSLARKLRI---PGRRTLGVLCARYDISIGRAHSADADAGASLLLLWSMM 200 Query: 181 HTAAAHL 187 H+ A Sbjct: 201 HSHPAEF 207 >UniRef50_A1VJH5 Exonuclease, RNase T and DNA polymerase III n=8 Tax=Proteobacteria RepID=A1VJH5_POLNA Length = 220 Score = 121 bits (305), Expect = 9e-27, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 6/186 (3%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEING 59 + + +D ETTGL+ T + +G + + + + + +++ ++ Sbjct: 39 ENEWVALDCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRLSAESVRVHR 98 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E+ + + A ++ ++ G FD ++ R P Sbjct: 99 LREQDVAQGI----SADEAMMKLMYFIGSRPLVGYYLEFDLAMINRVLFPMLGMGLPQPK 154 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 V + +++ + L +P+ + H A+ DA A F L Sbjct: 155 IEVSSMYYDYKFHQLPHHARDSGSIDLRFESLMKDLNLPLWSAHDALNDAIMAALAFLKL 214 Query: 180 RHTAAA 185 R A Sbjct: 215 RQLRAG 220 >UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9J0_9ACTN Length = 1011 Score = 121 bits (305), Expect = 9e-27, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 19/180 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++ +D ETTGL + ++ + ++ G + V ++ Sbjct: 49 LESDIVALDTETTGLSHKNDQLTQIAAVKLEEGS-VADEFTTFVNPSRPIPHNIEKLTNI 107 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 Y + A + D++ + N +FD + + + + Sbjct: 108 YSVDVEHA----PTPQTAVARLADFVELDPILAHNASFDRAFIEAAQNDTCVSDT----- 158 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + A ++ L +A G V H A D A A + + Sbjct: 159 --------WIDTLALSRIAFPALTSHKLQDLAYIFGCESV-THRANDDCTALAGVWHYIL 209 >UniRef50_B0UN90 Exonuclease RNase T and DNA polymerase III n=3 Tax=Rhizobiales RepID=B0UN90_METS4 Length = 223 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 15/189 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGY 60 + + +D ETTGLD V V + + L TV + P+A++++ Sbjct: 28 PDEAVALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESLRATVRSDRPSSPEAIKVHRL 87 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPL 117 L E + + ++ G G FD ++ + +P + Sbjct: 88 ----LNAEIREAEPLDAVLPALLRFIGGRPIVGYYTEFDVRMLDKSVRRQFGIRLPNPRI 143 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 V ++H + E LG+P + +H A DA TA + Sbjct: 144 DVSSLYHAA-------KYRDAPDYVKIDLSFARILEDLGLPALPQHDAFNDALMTAMIYL 196 Query: 178 MLRHTAAAH 186 LR A Sbjct: 197 QLRDLLARR 205 >UniRef50_A3J795 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J795_9FLAO Length = 202 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 64/171 (37%), Gaps = 12/171 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ +V D ETTGLDY + + +G + ++ + + +++ I+G Sbjct: 32 KRYVVFDCETTGLDYKSDRILSIGAVAIENNQIIVGDFMEVFLLQDVFKAESVPIHGI-- 89 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + A A ++++ T G + FD ++ + + Sbjct: 90 --LKEGKEEKIVEAEAIIRFLEFIKDATLVGHHVDFDIEMINQGLARLEV--------GK 139 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 ++ D + + LD + + + +RH+A GDA TA Sbjct: 140 LKNQAMDTDVMYQKLKYLPQEQHSSLDELCDIYKIRKSDRHTASGDAFITA 190 >UniRef50_B9ZJP8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJP8_9GAMM Length = 246 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 56/189 (29%), Gaps = 19/189 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 + + VDLETTGLD + + +G + +D V ++ I+ + Sbjct: 55 RFLAVDLETTGLDPEHDAILSIGWVAMDGVRIDLSTADQRLVRADCPVPEQSAVIHRITD 114 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMPFSPLTVGR 121 R A + + L+G + A + + Y + Sbjct: 115 REAAGGT----TVDSALDALFEVLQGRVLVAHHAALELGFLEEACYRLYGVRPPLP---- 166 Query: 122 VWHHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + D A +L L + R +P H A+ DA A F Sbjct: 167 -----VVDTLRLAERQLRRAGRPIPADGMRLHTLRGRYNLPQYRAHDALFDALAAGELFV 221 Query: 178 MLRHTAAAH 186 L + Sbjct: 222 ALVSQLSPE 230 >UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECT2_9ACTN Length = 964 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 19/179 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +IV+D ETTGL +E+ + E + V + E+ Sbjct: 35 EEDVIVLDTETTGLSVQDNELIEISAARLSGREVVDR-FDTFVHPKQLIPAEITELTSIT 93 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A + D++ G N FD + + + ++ Sbjct: 94 NADVADA----PSAVEAVAALADFVGGCPVIAHNATFDRSFIESVKGGVNVSD------- 142 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + A ++ + L +A+ G V H A D A + +L Sbjct: 143 ------IWIDSLALSRIALPRLASHKLSFMADLFGCDSV-SHRANADVDALCGVWRVLL 194 >UniRef50_UPI0001C41BCD exonuclease n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41BCD Length = 261 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 57/181 (31%), Gaps = 10/181 (5%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++I D ET+GL+ + +E+G+L ++ G+ + + D I G Sbjct: 44 NRIIFFDTETSGLNPNYCKIIELGMLVIEDGKIIE-EYDKLINIGERIDSTITRITGITN 102 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L E ++E A E + G N FD + + + + Sbjct: 103 DMLIDEGVSEGDVAQDLKE--KLISGTLMIAYNCQFDLSFAYGLLKRH---YPHEAEAII 157 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D + E + VN H AIGDA L+ Sbjct: 158 EDVKWLDPMTVFKDRKAYP----HKFSDAVEHYDIRNVNFHRAIGDAKGLYEVCLSLKDE 213 Query: 183 A 183 Sbjct: 214 R 214 >UniRef50_A4WYE4 Transposase and inactivated derivatives-like protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WYE4_RHOS5 Length = 282 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 17/179 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+D+ET + + ++GL+ + G + H ++ DP + I+G Sbjct: 2 KFVVLDVET--ANPRMSSICQIGLVTFEGGVEVAAESH-LIDPEDHFDPVNVAIHGIT-- 56 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E +G V D G A FD ++R +++P Sbjct: 57 --AAAVVGEPTFREVYGRVCDLTAGTVVACH-THFDRVALSRVCELHALP--------TL 105 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D A A GL +A G+ H A+ DA A Sbjct: 106 SCSWLDTARVARRAWVEFSKSGYGLSNLARHFGITFQ-HHDALHDARAAGLILARAIEE 163 >UniRef50_D1W3Q1 DNA polymerase III subunit epsilon domain protein n=36 Tax=Bacteroidetes RepID=D1W3Q1_9BACT Length = 194 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 14/178 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K +D ET + + VG++ V+ G+ H+ P+ + ++G Sbjct: 31 KDFAAIDFET--ANSCRSSVCSVGVVIVENGKITDSYYHLIRPYPNYYHPRNIAVHGILP 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 W ++ ++ N AFD + + TY M + Sbjct: 89 SDTQDA----PTFPEVWAQIAPLIKHLPLVAHNKAFDESCLKACFATYGMAY-------- 136 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ + L VA LG +VN H A+ DA A + + Sbjct: 137 LNYPFYCTLIASRRVFCHHELANHQLHTVAAHLGYNLVNHHHALADAEACSVIALNIL 194 >UniRef50_C4VNH6 DNA polymerase III n=4 Tax=Lactobacillus jensenii RepID=C4VNH6_9LACO Length = 316 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 14/175 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYY 61 ++D+ETTGL E+ + V G+ + + ++NG Sbjct: 33 DDYTMLDIETTGLSPYRDRVTELAGIKVRNGKVVDKYSQLVKHPKNNKVPQFITKLNGID 92 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E+ + + + A + ++++ + G N FD + +++ Sbjct: 93 EKLILTQGI---PVKEAITDFRNFIGEDVIVGYNVNFDLNFIYDLCEKFNLERLSNNYID 149 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 V H ++ L +RLG+ H + D+ T F Sbjct: 150 VLH----------FSRVFFKKESHNRLLDCIQRLGISESEAHRGLKDSLDTKAVF 194 >UniRef50_C4XRC4 DNA polymerase III epsilon subunit n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XRC4_DESMR Length = 242 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 6/184 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 + +V+D E TG D V V + + + ++ ++G Sbjct: 45 EFVVLDTELTGFDPKRDAIVSVAAVRLRGLSIMAGETFAALTRPQRDVPRQSSLVHGLTA 104 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTVGR 121 L + + D++ G + D + Y + + Sbjct: 105 STLSQA----ADLEAVLLRLLDFIGPAVIVGHHVDLDMGFLNAASRRYFGDELAAPCIDT 160 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + L ++ R G+P H A DA A A+ F L Sbjct: 161 LRLAMAYEEKRLSLEGGAGLEHAAFDLPSLCRRYGLPEFAAHDARHDALAAAYLFVYLAK 220 Query: 182 TAAA 185 Sbjct: 221 KLGQ 224 >UniRef50_B8F0B3 Exonuclease RNase T and DNA polymerase III n=2 Tax=Thauera sp. MZ1T RepID=B8F0B3_THASP Length = 201 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 14/184 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +++D ETTGL D A VE+ +++ L V +A I+G Sbjct: 18 LEANALILDTETTGLG-DDAEVVELAVIDCAGAVLLD----TLVRPSGPVPAEAAAIHGI 72 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + G N FD ++++ Y + Sbjct: 73 TDAMLAGA----PTWSELHARFCGLVEGRQVVIYNHEFDVRVISQTARRYGLQAPQGFDQ 128 Query: 121 RVWHHRL-ADLAAYAAGKLNI----DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + R+ + AYA + + L A A++ GV V N H A+GD T Sbjct: 129 VLDPGRIHCAMQAYAEFRGEWSAEKGQYRWQKLSAAAQQQGVTVENAHRALGDCLMTLGV 188 Query: 176 FDML 179 + Sbjct: 189 VRAM 192 >UniRef50_A8VW12 S-adenosylmethionine decarboxylase related n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VW12_9BACI Length = 233 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 48/173 (27%), Gaps = 15/173 (8%) Query: 7 VVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 V DLETTG + +G + + E + V + G E + Sbjct: 53 VFDLETTGFFPQKQDRILSIGGVKIKNNEITDDTFYSFVYYDQPISETIRHLTGIQEEDV 112 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 A + + F + A + + + + Sbjct: 113 LNA----PAEADVLTRFFAFAEDDLFIAHHAAHEKGFMQDALWR--------SFRATFQR 160 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 RL D + ++ T L+A + RH A+ DA A + Sbjct: 161 RLIDTIFLTKLQPDLRDTAE--LEACCRYFNIEPAGRHHALHDAKLAAELWIH 211 >UniRef50_C7M082 Exonuclease RNase T and DNA polymerase III n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M082_ACIFD Length = 475 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 51/183 (27%), Gaps = 17/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + ++D+ETTG EV ++ V G V P + + G Sbjct: 17 RFAILDVETTGAASGADELTEVAMMVVQEGR-ALAHLQSLVHTDRPIPPAIVALTGISNE 75 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + L G G N FD + + + + V Sbjct: 76 LVADA----PSARTVIERTARLLEGTVMVGHNVRFDRSFLGAAADAAGITLPEVPV---- 127 Query: 124 HHRLADLAAYAAGKLNIDPT-ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L ++ +D L +A L +P H A+ D T L Sbjct: 128 ------LDTLTLSRVLLDGEVPNHRLATLAHYLQLPP-PSHRAMADVVTTVALLHRLIER 180 Query: 183 AAA 185 A A Sbjct: 181 AGA 183 >UniRef50_C9KN36 Helicase, UvrD/REP/exonuclease family protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN36_9FIRM Length = 874 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 13/181 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A+ ++V D+E TG+D +++ L + + + + ++ Sbjct: 510 AENIVVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAEFKRLLRARRSVGD-SYRVHKIS 568 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L +E ++ E + G G N +D +I+ + +P Sbjct: 569 DAILQQEG---EEPEAVLREFCAFAEGAVIVGHNVTYDLSILGSELARLGLPP------- 618 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + R D + L+ + E V + H A+ D ATA Sbjct: 619 LSYQRYYDTLDIF--RRFYPNLPNHKLEYLGEFCKVSHRSTHDAMDDVCATAEILTYAIE 676 Query: 182 T 182 Sbjct: 677 K 677 >UniRef50_Q3B459 DNA polymerase III, epsilon subunit n=8 Tax=Chlorobiaceae RepID=Q3B459_PELLD Length = 236 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 19/186 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 +++V D ETTG D T + +G + ++ + + V Q +A+ ++G + Sbjct: 48 RMVVFDTETTGFDLKTDGVISIGAVAINGLSINVADSFEVLVRQDRVGRSEAVAVHGLLK 107 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A A +++ + + +FD ++ R T Sbjct: 108 KDIAGGAGEV----EAAEAFLEYIGSSILVAQHASFDVAMLNRIL--------SETFRIR 155 Query: 123 WHHRLADLAAYAA------GKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + D A+ A LD + +R G+ + +RH+A GDA TA Sbjct: 156 LFNGVVDTASLAKRLEKGPYYNLAHKAGEYRLDHLCQRYGIRLYDRHTAAGDAFLTAQLL 215 Query: 177 DMLRHT 182 L Sbjct: 216 QRLLSK 221 >UniRef50_A0Y5B9 DNA polymerase III subunit epsilon n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y5B9_9GAMM Length = 234 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 52/184 (28%), Gaps = 9/184 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYE 62 + +D ETTGL+ V VGL+ H V+ ++ I+G Sbjct: 44 PFVALDFETTGLNSKADDIVSVGLVPFTLARIYCKQSKHWVVQPRRNLSESSIVIHGITH 103 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLTV 119 + + D LR A + + + F + Sbjct: 104 NDVDNA----PDFDNIIAPLLDALRSKVIVVHYAAIERGFFNSALLLRLKEHIEFMVVDT 159 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L G++ L+ +R +P H A+ DA ATA Sbjct: 160 MELERRALKAKQGL-IGQIFNTKLGSLRLNDCRKRYSLPSYEGHHALTDALATAELLQAQ 218 Query: 180 RHTA 183 Sbjct: 219 LRHH 222 >UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2_9FIRM Length = 202 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 19/175 (10%) Query: 4 QLIVVDLET-TGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 I +D ET TG V + V G+ + D + I+G Sbjct: 19 NYIAIDFETATG---SMNSACSVATVEVRDGQLKEGWTTLIQPPGLRFDSFNIGIHGISP 75 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A W E+++ L G N +FD ++ + + Sbjct: 76 KDVTDA----PTFAEVWEELKERLAGKIVVAHNASFDMGVLKASLLANRLQAP------- 124 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L+ V L + H A+ DA A Sbjct: 125 ---YFRTCCTVRIARKVWPALDDHKLNTVGAHLNINF-RHHRALDDARTCAAILL 175 >UniRef50_A6DK72 DNA polymerase III n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK72_9BACT Length = 210 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 52/185 (28%), Gaps = 20/185 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVE--QLAAADPKAMEINGYY 61 +V+D E TGL + + + + G V + + + I+ Sbjct: 29 DYVVIDCEMTGLKPKQDKLLSIAAVKISQGRIQSQESFYRVIFQEKQKLRDETILIHRLN 88 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E D+ + G D + + +PF Sbjct: 89 HEQISTGSDQI----AVLKEFSDFCQNCIPVGHFFDIDLSFLNPVMP---LPFLYPH--- 138 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L K L+ + + +P H+A+GDA +TA F + Sbjct: 139 --------LDTRLLVKTLQPCPSSIQLNELCDFYNLPSFEAHNALGDATSTACLFLKILS 190 Query: 182 TAAAH 186 Sbjct: 191 ELRKK 195 >UniRef50_Q4A745 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A745_MYCS5 Length = 1451 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 20/187 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D+ETT L +E ++ + V I ++ + Sbjct: 410 RYVVFDIETTSLSAYHGEIIEFAATIIENKAVVDKV-DIFIKSKEKLSHFTTRLTSITNE 468 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ + + A ++ D L N N FD + + +M T Sbjct: 469 MLDQKGI---ELKEALQKIYDVLNNNVAVAHNANFDYNFLIEKFDQNNMQAPKCTF---- 521 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVVNRHSAIGDAAATAFCF----D 177 + + ++ + + L+ L H A+ D A + Sbjct: 522 ------IDSLVVSRILFEHRDKHNLNEFCRNLSVNYDTEKAHRALYDTEVLADAWIEATL 575 Query: 178 MLRHTAA 184 L+ Sbjct: 576 KLKDIKQ 582 >UniRef50_B5YGV6 DNA polymerase III alpha subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGV6_THEYD Length = 230 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 9/186 (4%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEING 59 +VVD E TGL+ + +G + + +++ I+ Sbjct: 21 ETDFVVVDTELTGLNEFRDNIIAIGAIKMKGRTIKIGDIFYRTVSPSTKKFRKESIMIHE 80 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E E + + G D T + ++ Sbjct: 81 ITPSELEKCPQIEP----ILREFIKFSKNCLVVGHCVDIDLTFLKKEIRNNLREIFEPFS 136 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L L D + L+ +A L + H A+ DA TA F L Sbjct: 137 IDTL---LIYKWLIKKEILPSDFSNKNSLEDIALSLDIEPKELHDALSDAFITAQIFQRL 193 Query: 180 RHTAAA 185 Sbjct: 194 LAYLGE 199 >UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase III n=3 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F5B Length = 203 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 64/186 (34%), Gaps = 22/186 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEING 59 M + V DLETTGLD E+ + D IT P+ + + G Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDIRITKNSGTKLTPEIVNLTG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E + VA + ++ G + FD +AR + P S + Sbjct: 61 ISESMMRGGVPEP----VAIMLLSCFMSGTIVVAHHAPFDLAFLARYQFE---PDSFVCT 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + +D E L +VAER G+ + H A+ D AT F + Sbjct: 114 RALSKLVESD--------------ESASLASVAERRGIELTGHHRAMNDVEATVKVFQQM 159 Query: 180 RHTAAA 185 + A A Sbjct: 160 KAEADA 165 >UniRef50_A7GA16 Exonuclease, DNA polymerase III, epsilon subunit family n=28 Tax=Clostridium RepID=A7GA16_CLOBL Length = 309 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 17/180 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ET + P +G++ V GE + V ++ + P + I+G Sbjct: 2 NFVAIDFET--ANEKRNSPCSIGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPH 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E + WG+++ + N N +FD +++ Y++ Sbjct: 60 MVQDEL----EFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEY---- 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + K + L+ V LG H A+ DA A + + Sbjct: 112 ------ICTMKLSKNFYSNIDNARLNTVNNFLGYKFK-HHDALADAMACSNILINISKEL 164 >UniRef50_C6HVS0 DNA polymerase III, epsilon subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVS0_9BACT Length = 288 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 16/183 (8%) Query: 2 AKQLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L+ VD+ETTGL ++ VE+G+ D+ + + + P I+G Sbjct: 28 EEDLLFVDVETTGLLFENDARIVEIGISVWDSFGLKERMTS-LINPGSPIPPMYTRIHGI 86 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W E +G N +FD ++ R+ + + Sbjct: 87 DDVMVEH----SPTFLEFWMENGIRFQGKVVIAHNLSFDMGMINRELMR-------RDMA 135 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + + + + L +A+ LGV +RH A D AA + Sbjct: 136 PLGNPGIDTVPILKS---LLPREKNHKLSHLAKSLGVRHDSRHRAEDDVAALEQVLTIAL 192 Query: 181 HTA 183 Sbjct: 193 DRP 195 >UniRef50_Q5E1T7 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) n=50 Tax=Proteobacteria RepID=Q5E1T7_VIBF1 Length = 238 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 8/184 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYE 62 + + +D ETTGLD + + +GL+ H V+ + + ++ I+G Sbjct: 47 EFVALDFETTGLDANQNSIISIGLVPFTLERIFCRQSQHWFVKAQDSLEENSVVIHGITH 106 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 L +V D L G + + + F + Sbjct: 107 SDLQGA----PDLRRILEQVLDALAGKVVVVHYRRIERDFFDANLRSLIGEGIVFPVVDT 162 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ + A L E L R G+P H A+ DA ATA F Sbjct: 163 MQIEGDYQQEQAKGFINWLKGKRPESIRLANTRLRYGLPSYPPHHALTDAIATAELFQAQ 222 Query: 180 RHTA 183 Sbjct: 223 VRYH 226 >UniRef50_Q1QRC1 Exonuclease n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QRC1_NITHX Length = 334 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 56/183 (30%), Gaps = 17/183 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 IV+D+ET + D A ++GL+ V GE + I V D I+G Sbjct: 3 NSDFIVLDVET--ANADYASICQIGLVEVVAGEVVSQEA-ILVNPDDYFDGFNTSIHGIT 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + L G+ + FD ++R + + Sbjct: 60 ADHVCGA----PLFHEVHAALSQRLSGSIIV-HHGPFDRVSISRACERCGIESFDV---- 110 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D L ++A G+ H A+ DA AT F + Sbjct: 111 ----QWLDNQRVVRRVWEQFSKSGYALKSLAAFFGIEFQ-HHDALQDAIATNEIFRRALN 165 Query: 182 TAA 184 + Sbjct: 166 ESG 168 >UniRef50_B5XKK7 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=33 Tax=Streptococcus RepID=B5XKK7_STRPZ Length = 833 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 17/182 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ VVDLE TG + ++ ++ + V + D + + G + Sbjct: 21 RKYAVVDLEATGAGPNASIIQVGIVIIQGNKIIDSYETD--VNPHESLDEHIVHLTGITD 78 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + + + F N FD+ ++A Sbjct: 79 KQLAKA----PDFGQVAHHIYQLIEDCIFVAHNVKFDANLLAEALFLEGYEL-------- 126 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + +L E L ++ +L + + H+AI DA ATA F L Sbjct: 127 ---TIPRVDTVELAQLFFPRFEKYNLGHLSRQLNIDLAEAHTAIADARATAILFLRLLQK 183 Query: 183 AA 184 Sbjct: 184 IE 185 >UniRef50_B6WSP3 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSP3_9DELT Length = 173 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 21/180 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + +D ET+G Y VGL ++ G + + ++G Sbjct: 2 MTGRYVALDFETSG--YAAHSACAVGLCRIEDGAVTDSFYSLIRPPSSRVL--FTHVHGL 57 Query: 61 YERGLYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L W ++ ++ N FD ++ + L Sbjct: 58 TWPLLKDA----PTFTEVWPQLAAFMEGSRAILAHNAGFDRRVLHASCQALGLVQPQLPF 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L + ++ LD+V + G+P+ H A DA A A + L Sbjct: 114 ----------LCTLKGARRSLP-LASRALDSVCDYFGIPLD-HHHAGSDARACAEIYLRL 161 >UniRef50_A0JY37 Exonuclease, RNase T and DNA polymerase III n=4 Tax=Micrococcaceae RepID=A0JY37_ARTS2 Length = 337 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 55/184 (29%), Gaps = 19/184 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYY 61 +D ET + P VGL V G + + D + I+G Sbjct: 4 DFTAIDFET--ANGFRGSPCAVGLSKVRGGVVVEEASWLMRPPEDHDRFDYHNVRIHGIR 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + E+ ++ G+ A N AFD ++ +P Sbjct: 62 PEDVAG----LPRFGELFPEIGAFIGGDVLAAHNAAFDLGVIRSALEVSGLPGPA----- 112 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + L AE GVP+VN H A DA A A + Sbjct: 113 -----YDYVCTVMLSRRCY-SLVSNSLPYAAEEAGVPLVNHHDAAEDARACAGILIDIAR 166 Query: 182 TAAA 185 A Sbjct: 167 RNGA 170 >UniRef50_B5JTW6 Exonuclease, RNase T and DNA polymerase III n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW6_9GAMM Length = 238 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 53/188 (28%), Gaps = 12/188 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGY 60 + +D+ETTGL+ + V +GL+ D H V ++ ++G Sbjct: 47 EAPCLAIDIETTGLNAERDKIVSIGLVEFDASRVYLASAKHWLVNPG-ELSDSSVIVHGI 105 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + R E+ + G A + + +S+ P Sbjct: 106 THSDVSRA----PTIDAVIPELLRAMAGRLSVVHYRAMEREFFR--MLGFSLWSQPWLFP 159 Query: 121 RVWHHRLADLAAYAAG----KLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + L + + L R +P H A+ DA ATA Sbjct: 160 VIDTFALETTCLKQSQGWFDRFRNKSLPSLRLPDARLRYHLPEYENHDALVDAIATAELL 219 Query: 177 DMLRHTAA 184 Sbjct: 220 QAQIQKWQ 227 >UniRef50_Q1MYK1 DNA polymerase III subunit epsilon n=2 Tax=Gammaproteobacteria RepID=Q1MYK1_9GAMM Length = 238 Score = 119 bits (300), Expect = 4e-26, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 9/183 (4%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYER 63 + +D ETTGL+ + + +G++ + V +++ I+ Sbjct: 46 FMALDFETTGLNPNDDSIISIGMVPFSLQRIYCNNAVYWVVRPNTPLSEESILIHHIKHS 105 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTVG 120 + + + + L + + + + ++ F + Sbjct: 106 EIQSA----PRIERLLEPLLEKLSEHILVVHFQRIERLFLNNTLKEHLGETLQFPLIDTM 161 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L G++ P L+ ER +P H+A+ DA ATA F Sbjct: 162 EIEKKALKARQGLT-GRILNKPVGGIRLNNCRERYSLPQYQSHNALIDAQATAELFIAQV 220 Query: 181 HTA 183 Sbjct: 221 AHH 223 >UniRef50_C6X498 DNA polymerase III subunit epsilon n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X498_FLAB3 Length = 185 Score = 119 bits (300), Expect = 4e-26, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 22/182 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYYE 62 +D ET ++ E+G+ V+ G+ + + P+ ++++G Sbjct: 3 DFCAIDFET--ATHERNSACEMGICVVEDGQIVKTQTWLIKPPNYPYFHPRNIDVHGITP 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R + W E ++ + GN N FD+ ++ Y Sbjct: 61 RDVQD----SPTFDEIWHEAENLMYGNLMVAHNAGFDAGVLRSCLDYYGF---------- 106 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC----FDM 178 + +L L + + K + GL ++AE+ + H A DA A F+ Sbjct: 107 YKPKLNYLCSISIAKKSWKNLPKYGLKSLAEQHQISFK-HHRAGDDAEVCAKISLLAFEK 165 Query: 179 LR 180 L Sbjct: 166 LM 167 >UniRef50_D1XX28 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1XX28_9BACT Length = 894 Score = 119 bits (300), Expect = 4e-26, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 13/186 (6%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA----MEIN 58 ++++V D ETTGLD T +E+ + + G+ + + + K + Sbjct: 510 QEIVVFDTETTGLDVFTDDIIEISAIKIKEGKIVGEPLDLYIYTDKPILQKLGTKENPLY 569 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 Y + L L + A + +++ +T G N +D I+ Y Sbjct: 570 EIYHKKLASGELLKAN--DALNKFIEFVDNSTLIGHNINYDYHILDNCLKRY-------A 620 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + +H + +L L+ + ER + +N H +I D AT + Sbjct: 621 NDCMDNHSYKYFDSLKLIRLLEPSLRSYKLEYLLERFQLEGINSHQSIDDVKATISLINY 680 Query: 179 LRHTAA 184 A Sbjct: 681 CADKAQ 686 >UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales RepID=A6VXX3_MARMS Length = 484 Score = 119 bits (299), Expect = 4e-26, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 54/195 (27%), Gaps = 13/195 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEINGYY 61 D ETTG D P++ + D + + + + P+A + G Sbjct: 9 FFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLTGIS 68 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSPLTVG 120 + RE L E + A + FD +V + P++ Sbjct: 69 PQDANREGLCEAEFMQAVEAELSQPGTCALGYNTIRFDDEVVRYGFYRNFIDPYTREWQN 128 Query: 121 RVWHHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + DL L+A+ + G+ H A+ D T Sbjct: 129 NCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKANGIAHEQAHDALSDVYGT 188 Query: 173 AFCFDMLRHTAAAHL 187 L + L Sbjct: 189 IEI-AKLIRSKQPKL 202 >UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D091_MYXXD Length = 988 Score = 119 bits (299), Expect = 5e-26, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 20/177 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +DLETTGLD +E+G + + G + + + G + L Sbjct: 12 VFLDLETTGLDPRVDEVIELGCIFFENGREVERFARLY-SASRPLPLTIRRLTGLTDADL 70 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + E+++ L G T N F+ + + H Sbjct: 71 EGH----PRFGTDIAELREKLSGWTVVAHNAPFEKGFL-------------PDLLGPIHA 113 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D L+++ G+ + H A+ D A Sbjct: 114 PVLDSCELMHY--LHPELPSHSLESLLRWGGLALRQPHRAVSDCEAVYSVLVHAMER 168 >UniRef50_B5YGW1 DNA polymerase III PolC-type, putative n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGW1_THEYD Length = 225 Score = 119 bits (299), Expect = 5e-26, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 14/181 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGY 60 K+ +V+D E TGLD + +G + + L + KA+ I+ Sbjct: 17 NKEFVVIDTELTGLDEKNDSIISIGAITMRERSILIGDIFYRILNPQCKPKDKAVLIHKL 76 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPL 117 L + + E D+++ G D + ++ + + Sbjct: 77 TSTELEQC----PDIKLILKEFIDFIKNRPIVGHFIEIDIKFLRKETSKWLNTGFTPEAI 132 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 +++ + K L +AE + V H A+ DA TA F Sbjct: 133 DTYIIFNWLIEREIISKKFKGAK------SLPEIAEAFDIKVDMLHDALYDAFITAQIFQ 186 Query: 178 M 178 Sbjct: 187 R 187 >UniRef50_B7A7M2 DNA-directed DNA polymerase n=3 Tax=Thermus RepID=B7A7M2_THEAQ Length = 247 Score = 119 bits (298), Expect = 6e-26, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 52/172 (30%), Gaps = 17/172 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++V+DLETTGL +EV L+ ++ + F P + G Sbjct: 73 VVVLDLETTGLAPGLNEIIEVALVRLEGERRVAFQS--LARPRRPPSPFIQRLTGITLEE 130 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + L G T N +FD + + Sbjct: 131 LEKA----PPLEEVLFRAYPLLEGATLVIQNASFDLGFLRPALGELGLELENPV------ 180 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + K + GLDA++E L + H A+ D T Sbjct: 181 -----VDSIRLSKRAMRGLRRYGLDALSEVLELAPRAEHRALLDVERTLAVV 227 >UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=EX1_ECOLI Length = 475 Score = 119 bits (298), Expect = 6e-26, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 50/200 (25%), Gaps = 15/200 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEI 57 + D ET G P + + D+ ++ + P A+ I Sbjct: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + + E A + + +N FD + Sbjct: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD-PYA 125 Query: 118 TVGRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIG 167 + + R L A L+ + + G+ N H A+ Sbjct: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 Query: 168 DAAATAFCFDMLRHTAAAHL 187 D AT L T L Sbjct: 186 DVYATIA-MAKLVKTRQPRL 204 >UniRef50_Q10MN9 Os03g0301400 protein n=4 Tax=Poaceae RepID=Q10MN9_ORYSJ Length = 313 Score = 119 bits (298), Expect = 6e-26, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 24/189 (12%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++V D+ETTG +E + ++ G++ + K ++G Sbjct: 110 PATILVFDIETTGFSRRYERIIEFAVRDLMGGKN--STIQTLINPEREI--KNAYVHGIS 165 Query: 62 ERGLYREALTEQQTAVAWGEVQDW-------LRGNTFAGSNP-AFDSTIVARQRVTYSMP 113 + + + + + + N +FD + + + Sbjct: 166 SSMV--CKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIE 223 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDP--TELEGLDAVAERLGVPVVN-RHSAIGDAA 170 D A + D + LD + E +P+ H A+ D Sbjct: 224 MPGD-------WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVI 276 Query: 171 ATAFCFDML 179 + L Sbjct: 277 TLCYVLQKL 285 >UniRef50_D0WP21 Putative DNA polymerase III epsilon subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WP21_9ACTO Length = 240 Score = 119 bits (298), Expect = 6e-26, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 57/187 (30%), Gaps = 7/187 (3%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +I D ETTG+D V L+ V + + +A ++G Sbjct: 10 SSPVIGFDTETTGIDPKRDRLVTCSLVAVTEEGV--SKRYWLADPGVEIPERAGAVHGIT 67 Query: 62 ERGLYREA-LTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E +++ + + + + N +D T++ + + +P + Sbjct: 68 TERARAEGRPSKEVLEEVAALLAEHMGRGHPAVAFNATYDFTLLESELDRHGLPTLAERL 127 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDM 178 G + + + L+ + GV + H+A D AT Sbjct: 128 GGEVFPVVDPYLLDRSA--DRYRKGKRRLEDLCRHYGVHAEDDFHNAEADVLATLRLLAA 185 Query: 179 LRHTAAA 185 + Sbjct: 186 IVRKFPE 192 >UniRef50_A7GZ66 Nickel transport permease component NikD n=5 Tax=Campylobacter RepID=A7GZ66_CAMC5 Length = 273 Score = 118 bits (297), Expect = 7e-26, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 19/181 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +VD+ET+G + +E+G L + G + ++ G + Sbjct: 74 QEFCIVDIETSG-GITSGQIIEIGALKIKNGVEIGRFESFVDAPF--VPENITQLTGISQ 130 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + +L + F N FD +++ + Sbjct: 131 SDLTGA----PSLKSVLERFKIFLGTSVFVAHNVNFDYGFISQSLSNIGLGMLLNRK--- 183 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + I ++ GL ++ E LG+ H A+ DA A + Sbjct: 184 -------LCTIDLSRRTI-ASQKYGLGSLKELLGINNT-HHRALNDAIAATEILKICISR 234 Query: 183 A 183 Sbjct: 235 L 235 >UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID=B0BNV2_ACTPJ Length = 514 Score = 118 bits (297), Expect = 8e-26, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 52/202 (25%), Gaps = 17/202 (8%) Query: 1 MAK--QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAM 55 M K D E+ G+ P + + D+ ++ + P+A+ Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 + G + E + E + A +N +D + Sbjct: 61 MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFD-P 119 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSA 165 + + R L A L+ + + G+ N H A Sbjct: 120 YEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDA 179 Query: 166 IGDAAATAFCFDMLRHTAAAHL 187 + D AT L L Sbjct: 180 MADVYATIA-MAKLIKQKQPKL 200 >UniRef50_A4B904 DNA polymerase III subunit epsilon n=1 Tax=Reinekea blandensis MED297 RepID=A4B904_9GAMM Length = 236 Score = 118 bits (297), Expect = 8e-26, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 8/182 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + VD+ETTGL+ + + +GL+ + + +++ ++ Sbjct: 47 EFVAVDIETTGLNAEQDDIISIGLVPFTAQRITLAKARHWLVRTRNLTSESVVVHRITHS 106 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPLTVG 120 + + EV L+G + + + F + Sbjct: 107 DIAQA----PPLRAVLSEVIPCLQGRQVVVHYRYMEREFFRQSVAGLHESTWLFPVIDTL 162 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L + +L L V ER +P H+A+ DA ATA Sbjct: 163 ELEAAHLRQKQSIV-SRLFKQTLPSLRLPNVRERYNLPAYENHNALTDALATAELLQAQV 221 Query: 181 HT 182 Sbjct: 222 AK 223 >UniRef50_A7A5A0 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5A0_BIFAD Length = 261 Score = 118 bits (297), Expect = 8e-26, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 17/164 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VD+ETTGL D A +E+G + + G + V K +I G Sbjct: 96 EDDYVAVDIETTGLGRD-ARIIELGAVRIRHGRKV-ASYSQLVNPQIPIPAKVTQITGIT 153 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVG 120 +R + + A + + +T+ G N FD ++AR+ ++ Sbjct: 154 DRNVKGK----PTIDKALPKFYAFCGRDTWIGHNIRRFDIPVIAREAQRVGAGMPDVSFY 209 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + + + + + G+ RH Sbjct: 210 ----------DTMELSQALLPQLDHHRVVDLIRYFGIAKTERHR 243 >UniRef50_Q0J9Z9 Os04g0623400 protein n=4 Tax=Oryza sativa RepID=Q0J9Z9_ORYSJ Length = 282 Score = 118 bits (297), Expect = 8e-26, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 19/187 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A ++V DLETTG + VE L ++ G++ F V + Sbjct: 59 AATILVFDLETTGYFHKDHRIVEFALCDLSGGKNSTFE--TLVNPERTVPDYVEHLIKIG 116 Query: 62 ERGLYREALTEQQTAVAWGEVQDWL-------RGNTFAGSNPA-FDSTIVARQRVTYSMP 113 + + + + ++ + + N FD+ +A++ S P Sbjct: 117 TDLV--CRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAP 174 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAAT 172 + L L+A+ E G+ + H A+ D Sbjct: 175 LPADWLF------FDTLLLAKKMVKAEGKKRRTSLEALREHYGIVSHDDAHRAMRDVMIL 228 Query: 173 AFCFDML 179 + F + Sbjct: 229 SQVFQKM 235 >UniRef50_A6DBG1 DNA polymerase III subunit epsilon n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBG1_9PROT Length = 248 Score = 118 bits (297), Expect = 8e-26, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + ++DLE +E+G + + + + ++ G + Sbjct: 65 EYTILDLEVNNSKPKEGQIIEIGAVKLKNLVPIDEFSFLIYA--KDIPRYVTKVTGINNQ 122 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E + + +L + FD +A+Q + + Sbjct: 123 MLKNEKSQ----KEILEKFRLFLGDSVIVAHAADFDFNFLAKQFEKEDLGYLLN------ 172 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L K + GL + E L +P H A+GDA T F Sbjct: 173 ----PHLCTITLAKKTL-KANRYGLKYLKEELNLPEEIDHRALGDARTTTRVFLKSLENL 227 Query: 184 AAHL 187 + Sbjct: 228 PKSI 231 >UniRef50_Q04DG0 DNA polymerase III, epsilon subunit or related 3'-5' exonuclease n=3 Tax=Leuconostocaceae RepID=Q04DG0_OENOB Length = 177 Score = 118 bits (296), Expect = 9e-26, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 18/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ET + +A V +GL V + + ++ + EING Sbjct: 2 NFLAMDFETASSEPWSA--VSLGLTIVRDNQI-AQNWYSLIKPETSFSYWNTEINGLTAD 58 Query: 64 GLYREALTEQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + W ++++ + G N FD+ ++ + Y + Sbjct: 59 DV----LDSPKFPEVWADIKNLYDDYPVVVGHNVRFDNNVLKQTLKYYGLKTP------- 107 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R L + + LD V LG+ + + H+A DA A+A Sbjct: 108 ---RYLSLDTVSLPRKFQPGMVNHKLDTVVSDLGLFLEHHHNASDDAQASAQILIYEIEH 164 Query: 183 AAAH 186 Sbjct: 165 FGEE 168 >UniRef50_O67875 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O67875_AQUAE Length = 210 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 17/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D E T LD A + +G + V E + + KA EI+G Sbjct: 36 RFVVFDCEATELDVKKAKLLSIGAVEVKNLEIDLSKSFYEILKSDEI--KAAEIHGITRE 93 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + +++G+ G FD ++V + + Y + Sbjct: 94 DVEKYGKEP---KEVIYDFLKYIKGSVLVGYYVKFDVSLVEKYSIKY------------F 138 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + + + LD + + LGV + RH+A+ DA TA F Sbjct: 139 QYPIINYKLDLFSFVKREYQSGRSLDDLMKELGVEIRARHNALEDAYITALLFLK 193 >UniRef50_C9PT90 Putative uncharacterized protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PT90_9BACT Length = 900 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 9/185 (4%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGY 60 ++++V D ETTGL+ V++ + + + + ++ +I Sbjct: 514 TEEIVVFDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFIKTERPIPAMLGDIP-- 571 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + T A A + ++ + N FD I+ Y Sbjct: 572 NPIVAELQRNTCLPAAQALQDFMQYVGDSVLLAHNADFDYNILRFNLQRYCPSIDLHATH 631 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + +L + L A+ E L + N H A D AT R Sbjct: 632 PTY------FDSLKIIRLLQPGLKQYKLKALLEVLHLEGTNSHLADEDVQATVSLVGYCR 685 Query: 181 HTAAA 185 AA Sbjct: 686 QKAAE 690 >UniRef50_Q2FLJ5 Exonuclease n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FLJ5_METHJ Length = 215 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 13/190 (6%) Query: 4 QLIVVDLETTGL-----DYDT-----ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK 53 + ++ D E+TGL D V++ + D + ++ Sbjct: 2 KYLIFDTESTGLPREEKDPFHYPEYWPRMVQLAWILTDGETIITEENYLIYPDGFVIPSS 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 +MEI+G E + + E + + G N +FD +IV + + Sbjct: 62 SMEIHGITNERAREEGKPVLEVLSVFSE--SIKQADVLVGHNVSFDRSIVTSEYSRAKLN 119 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGDAAAT 172 L + + + K + L + + P + H A D A Sbjct: 120 APILKLPYHCTMKTSTEVCKLPAKGGRRGYKWPSLSELHQFLFEEPFEHAHDASADVRAC 179 Query: 173 AFCFDMLRHT 182 C+ L++ Sbjct: 180 MRCYLELKNR 189 >UniRef50_Q2NHS5 Predicted 3'-5' exonuclease n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NHS5_METST Length = 445 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 19/180 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+DLE ++ +G++ + + + + D ++I Sbjct: 2 RDYVVMDLE--NPNFRQNSICAIGVMLIRNNNVVERK-YSLINPEDTFDNINIQITKIAP 58 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + W E+ WL N G N +D ++ + Y + Sbjct: 59 HMIKQ----SPTLPEYWSEISSWLSNNVIVGHNITYDLRVLTKSLQRYDLEVPEFNYC-- 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + N+ L+ +A++L + + N H+AI DA A F+ + Sbjct: 113 --------CTLTQSRKNL-DLPSYKLENIAKKLHI-IYNPHNAIEDARAAYELFEYINRH 162 >UniRef50_C2PKV5 DNA polymerase III subunit epsilon n=1 Tax=Bacillus cereus MM3 RepID=C2PKV5_BACCE Length = 280 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 15/156 (9%) Query: 27 LLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWL 86 ++ V+ GE + + + D + I+G + + A+ + Sbjct: 1 MVFVENGEIID-TLYELINPEEDFDYYNIAIHGITPSDVKDALTF-PEFYEAYKK---RF 55 Query: 87 RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELE 146 FD + Y +P + L Y K I + Sbjct: 56 ENKLLVAHYLPFDGYALRDSLRRYELPSVYNNL----------LCTYQLSKKLITGEKSY 105 Query: 147 GLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + + + N H+A+ DA A A L H Sbjct: 106 TLKYLCKHFSIELNNHHNALEDARACAQLMLQLSHK 141 >UniRef50_B7V8D9 Probable nuclease n=6 Tax=Pseudomonas aeruginosa RepID=B7V8D9_PSEA8 Length = 208 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 16/189 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGY 60 A+++I +DLETT LD A + +G + V G+ + + VE + D +++ I+ Sbjct: 29 AEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKL 88 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPL 117 L + A +V ++ G +FD ++ R + + Sbjct: 89 RRADLEGQLQ----LEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSI 144 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + ++H ++ + D D +A L VPV RH+A+GDA A A F Sbjct: 145 EISSLYHRKV--------SRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFM 196 Query: 178 MLRHTAAAH 186 L A Sbjct: 197 RLLKGPAPK 205 >UniRef50_A1TZ29 DNA polymerase III, epsilon subunit n=3 Tax=Marinobacter RepID=A1TZ29_MARAV Length = 235 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 13/184 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAAD-PKAMEINGYYE 62 +LIV+DLETTGL+ + +G + ++ G + + D + + I+G Sbjct: 40 RLIVLDLETTGLNASKDEVIAIGAVAIEGGVIHLNDQFDLILRRPELDIRETVLIHGIGP 99 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + T A + +W+ G+ + AFD + + +G Sbjct: 100 EALTQGYET----QDALLYLLEWMNGDPILAYHSAFDQKFLEKTLK--------SQLGYT 147 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 H D+A + GLD A+ G+ + RH A DA TA + + Sbjct: 148 LPHVWMDVAELMPAFFPKATIKGRGLDDWADVFGLEISERHHAAADALVTAELALIALNK 207 Query: 183 AAAH 186 A + Sbjct: 208 ARKN 211 >UniRef50_Q1JYJ5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JYJ5_DESAC Length = 193 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 63/179 (35%), Gaps = 14/179 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VDLETTGLD T + + + G + V+ + P++++ +G + Sbjct: 6 FCIVDLETTGLDLTTDTIINAAAVKIKKGRIT-KIYETYVKPPTSIPPESIQFHGITDDM 64 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + E ++ + G + FD ++ R Sbjct: 65 L----VDKPSIGEVLPEFMTFIGDSMITGHHINFDLKMLDRHLREN---------YDCNL 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L KL ++ LD + + RH A+GD+ ATA F + H Sbjct: 112 EGAPWLDTMLLHKLVMENNTSTQLDDLLNVYCIDCEQRHRALGDSIATAKVFLRILHEL 170 >UniRef50_C1YLW5 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YLW5_NOCDA Length = 360 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 20/186 (10%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + V+D+ETTGL+ + A VE+ ++ V ++ A + E +G E Sbjct: 43 EYAVLDMETTGLEPREGARIVEIAVVRVRGDGKFVEEFSTLIDPRAPVGGR--EFHGIGE 100 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + + L G G N F+ +A + V +P + + Sbjct: 101 GD----TVGAPTAAQVVPRLTELLSGAVVVGHNLDFEQRFLASELVPAGLPTGQAGLCTL 156 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLRH 181 + E L + RL G +H+A+GDA A A + Sbjct: 157 ------------RALRSQVELERYSLPKASHRLSGDWPTGQHTALGDARACAKLLAEMLT 204 Query: 182 TAAAHL 187 A L Sbjct: 205 NAPGEL 210 >UniRef50_B6JP45 DNA polymerase III epsilon subunit n=17 Tax=Helicobacter RepID=B6JP45_HELP2 Length = 323 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 19/175 (10%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYERGL 65 +DLETTG +E+G + V GE + F + V+ + E+ G Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINRFETLVKVK---SVPDYIAELTGIAYEDT 167 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 A E++ +L + F N FD + R V + + Sbjct: 168 LNA----PSVHEALQELRLFLGNSVFVAHNANFDYNFLGRYFVEKLH-------CPLLNL 216 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +L L L++ L + E LG + H A DA A+ F++ Sbjct: 217 KLCTLDLSKRAILSM----RYSLSFLKELLGFGIEVSHRAYADALASYKLFEICL 267 >UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostridiales RepID=C7H6D8_9FIRM Length = 244 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 56/183 (30%), Gaps = 17/183 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGES------LYFVPHITVEQLAAADPKAMEIN 58 ++ D ETTGL+ ++ +E+ + V+ E + + + K +E+ Sbjct: 14 VVFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKIVELT 73 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + L E +TE + A + E+ N FD A + Sbjct: 74 GITDEQLENEGITEAEAAARFTELIS-GGRVLLVAHNAQFDLLFTAEMLRRHGNGGPE-- 130 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATAFCF 176 + D + L + V N H AI D AA Sbjct: 131 --ALKAADYLDSLTVYKDRRAYP----HKLANAILTYKLEGKVQNSHRAIDDVAALFEVC 184 Query: 177 DML 179 + Sbjct: 185 KAM 187 >UniRef50_B9F7W0 Putative uncharacterized protein n=3 Tax=Poaceae RepID=B9F7W0_ORYSJ Length = 901 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 24/189 (12%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++V D+ETTG +E + ++ G++ + K ++G Sbjct: 698 PATILVFDIETTGFSRRYERIIEFAVRDLMGGKN--STIQTLINPEREI--KNAYVHGIS 753 Query: 62 ERGLYREALTEQQTAVAWGEVQDW-------LRGNTFAGSNP-AFDSTIVARQRVTYSMP 113 + + + + + + N +FD + + + Sbjct: 754 SSMV--CKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIE 811 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDP--TELEGLDAVAERLGVPVVN-RHSAIGDAA 170 D A + D + LD + E +P+ H A+ D Sbjct: 812 MPGD-------WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVI 864 Query: 171 ATAFCFDML 179 + L Sbjct: 865 TLCYVLQKL 873 >UniRef50_D1U8F3 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8F3_9DELT Length = 179 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 19/175 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D ET D VGL+ VD GE + + +P ++++G + Sbjct: 7 TTRFVAIDFET--ADAKRDSACAVGLVVVDRGEIVARDYRLIRPPRRRFNPFCVQVHGIH 64 Query: 62 ERGLYREALTEQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + W ++ + + N +FD +++A Sbjct: 65 WEDVADQ----PAFGELWPDLSPLFEGADFLVAHNASFDKSVLAACCRESRCLPPVQPF- 119 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 L + L V LG+ + H A DA A A Sbjct: 120 ---------LCTVQLARTTW-QLPSNKLPNVCCHLGITLT-HHHAASDAEACARI 163 >UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB51_MYXXD Length = 219 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 65/180 (36%), Gaps = 13/180 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTG-ESLYFVPHITVEQLA--AADPKAMEING 59 + L VDLETTGLD +EV +L VD + V+ A P+A+ + G Sbjct: 29 RTLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVKPTRLADAHPEALAVCG 88 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 Y + V L G AG N +FD + + + Sbjct: 89 YSDEEWRDAL----PLQEVLATVTPLLAGTLVAGHNTSFDWGFLVESYRRSELALPSVDY 144 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ D A+ A L E L+A+A+R G+ H A+ DA L Sbjct: 145 HRL------DTASLAWPLLATGEVESLSLNALAKRFGLHRPTPHRAMADARCALEVARCL 198 >UniRef50_D2ATQ8 DNA polymerase III epsilon subunit and related 3'-5' exonuclease-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ATQ8_STRRD Length = 407 Score = 117 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 16/160 (10%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+DLETTGL +E+G++++D + V P+ I+G Sbjct: 10 YAVIDLETTGLRPSWNDRVIEIGIVHLDLSGEVTGEWATLVNPGRDLGPQ--HIHGITAA 67 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + G V + L G A N FD+ ++ + + Sbjct: 68 DIRHA----PAFGEIAGAVAERLDGRVVAAHNLPFDAGFLSHEFGRLGLDTPLDHTAG-- 121 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 + A + L A R GV + H Sbjct: 122 ------VCTMAWSAQFLPGAPR-SLAACCARAGVSLNGHH 154 >UniRef50_D0L8D9 Exonuclease RNase T and DNA polymerase III n=2 Tax=Corynebacterineae RepID=D0L8D9_GORB4 Length = 590 Score = 117 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 49/186 (26%), Gaps = 19/186 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++VD+ETTG + + + + +D + + P + I+ Sbjct: 10 WVLVDVETTGTNARRDRVLSLATMTLDYDGRVEDEYATLLNPGCDPGP--VHIHNLTRDR 67 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L+ V +Q L G T N FD + + Sbjct: 68 LHGA----PTFDVTMSPLQQMLAGRTMVAHNATFDHGFLVEEARRLGATLPIDH------ 117 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM---LRH 181 L + L +A G+ H A D A F L Sbjct: 118 ----RLCTVTLARRLQLDVPNVKLGTLATYWGIRQRAAHDARDDVRTLAEVFRRSLDLAE 173 Query: 182 TAAAHL 187 T L Sbjct: 174 TLGLRL 179 >UniRef50_C9PB04 DNA polymerase III epsilon subunit n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PB04_VIBFU Length = 222 Score = 117 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 6/185 (3%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYY 61 + L+ +D+ET+GLD + V +G + + + + DP+ + ++ Sbjct: 30 QPLLSLDIETSGLDAEHDHIVSIGWVPIVNQVIRLAEARYFLITPSGQNDPQQVVLHHIM 89 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A A + L+G + + + P P+ Sbjct: 90 PQMQRQGI----PLAQAIELLFTQLKGKVLLAHGSVVERQFIHHFMQQHGWPDLPIVWLD 145 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 A A YA + L V +R +P H A+ DA ATA + ++ Sbjct: 146 TLKIEQAY-AQYAPYNMPHSNANDWRLSTVRKRYHLPAYQAHHALSDAIATAELYLAQQN 204 Query: 182 TAAAH 186 A Sbjct: 205 RLFAK 209 >UniRef50_C5WML0 Putative uncharacterized protein Sb01g037840 n=1 Tax=Sorghum bicolor RepID=C5WML0_SORBI Length = 583 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 56/189 (29%), Gaps = 24/189 (12%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++V D+ETTG +E + ++ G++ + + ++G Sbjct: 380 PATILVFDIETTGFSRREDRIIEFAVRDLMGGKN--STFQTLINPEKEV--RNAYVHGIS 435 Query: 62 ERGLYREALTEQQTAVAWGEVQDWL-------RGNTFAGSNP-AFDSTIVARQRVTYSMP 113 L + + ++ + + N +FD + + + Sbjct: 436 NSML--CRPDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFRRCKLE 493 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTE--LEGLDAVAERLGVPVVN-RHSAIGDAA 170 D A ++ D ++ L + ER +P+ H A+ D Sbjct: 494 MPGD-------WLFVDTLPIARQLVDSDGSKLSSVSLKNLRERYNIPLTGSAHRAMQDVT 546 Query: 171 ATAFCFDML 179 + L Sbjct: 547 TLCYVLQKL 555 >UniRef50_Q3ILF6 Putative DNA polymerase, exonuclease activity n=2 Tax=Alteromonadales RepID=Q3ILF6_PSEHT Length = 207 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 54/186 (29%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++ +V+DLE TGLD V + + ++ + + ++ +G Sbjct: 21 LKQRYLVIDLELTGLDAKQHEIVSLAWVVIENQCIKMSQSQHLINKEVKNLAQSPVYHGI 80 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + Q + + N D + ++ P Sbjct: 81 NNDNVAAG----QSLHSILEHLSEHFNDCILVFHNAMLDWGFLKPALKNANITTRP---- 132 Query: 121 RVWHHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + +L E L+ R +P + H A+ DA ATA F Sbjct: 133 ----KLILCTLQIEKKRLQHQGVEIKQDDLTLNECRNRYELPSYHCHHALTDAQATAELF 188 Query: 177 DMLRHT 182 H Sbjct: 189 LAQCHQ 194 >UniRef50_C1YMP7 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YMP7_NOCDA Length = 335 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 47/167 (28%), Gaps = 20/167 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK---AMEI 57 M++ +D ET ++D VGL+ V G + + D + + Sbjct: 1 MSRTWTAIDFET--ANHDRGSACAVGLVRVRDGAVVDRYT-TLIRPPRQVDFFSRHNIAV 57 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + A + ++ G N AFD ++ + + Sbjct: 58 HGITAADVADA----PSWEQAHARIVEFADGGPLVAHNAAFDMGVLRQACGHTGL----- 108 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 H A + L V +G V + H Sbjct: 109 -----SHPAWEYACTLALSRRTWSGLPDHKLPTVCAHIGHRVTHHHR 150 >UniRef50_D0Z0S6 DNA polymerase III epsilon subunit n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z0S6_LISDA Length = 237 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 56/183 (30%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYY 61 + +V+D ETTG D + + VG + + + + P+ IN Sbjct: 51 EYLVLDFETTGFDPEQDDILSVGFVTISQQRIDLSTATELLIKDSQQKVKPETAIINHIT 110 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR-VTYSMPFSPLTVG 120 L + A + + ++G + + Y +P P+ Sbjct: 111 TEKLAHGV----ELDCAMAALFNAMKGKIMVAHGAMIEQRFLNHYLATRYQLPPLPI--- 163 Query: 121 RVWHHRLADLAAYAAG---KLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 D L + +R G+P H A+ DA ATA Sbjct: 164 -----IWLDTLTIEKSLSIHRQQLKANDYRLAQIRQRHGLPAYPAHGAVIDAIATAELLL 218 Query: 178 MLR 180 +L+ Sbjct: 219 VLQ 221 >UniRef50_C9LHX7 Exonuclease n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LHX7_9BACT Length = 256 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 19/189 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +I D+E TGL VE+ + V + +A +NG Sbjct: 6 LTRPIIFFDIEATGLQIARDRIVELSYIKVFPDGREESKT-LRFNPEMHISAEATAVNGI 64 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + GE+ + AG N FD ++ + F Sbjct: 65 KDEDVADC----PTFKEKSGELTAIFQSCDLAGFNSNVFDVPMLVEEFARAGSDF----- 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDM 178 + +L D+ E L A + + N H+A+ D AT Sbjct: 116 -DITKSKLVDVQTI------YHKLEPRNLIAAYKFYCNKDLHNAHTAMADTQATYEVLKA 168 Query: 179 LRHTAAAHL 187 L Sbjct: 169 QLDKYGKEL 177 >UniRef50_Q1N3V9 Exonuclease n=1 Tax=Bermanella marisrubri RepID=Q1N3V9_9GAMM Length = 224 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+D ETTGL + +G + +++G+ ++ ++ I+ + Sbjct: 42 RYLVIDTETTGLSPKDNTLLSIGWVAIESGKVKLNSARHRYIKVKEGVGQSATIHQIRDC 101 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A EV ++ + + D + + Sbjct: 102 ELQDGV----TINQAMAEVLTAMKDSVLVFHHAPMDMAFLNKYCRQL--------YNAPL 149 Query: 124 HHRLADLAAYAAGKLNIDPTEL----EGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L D + + L +R G+ H+A+ DA ATA Sbjct: 150 LMPLVDTLNIEKSRHMHNDQARKNGFFRLAHCRQRYGLSAHQGHNALTDAIATAELLLAQ 209 Query: 180 RHTAA 184 Sbjct: 210 VAHKG 214 >UniRef50_A3Y5Y0 Exonuclease n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5Y0_9GAMM Length = 230 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 7/183 (3%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V+D+ETTGLD + +G + + G + D K + I+ Sbjct: 35 NHEYLVLDMETTGLDATKDRVISLGWVLIKNGAIKLSSARHILLDNGPVDEKTVAIHMIT 94 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + +VA ++ L + + + + + + V Sbjct: 95 DQDISELGRNP---SVAMRYLRQLLLDKVLVVHHAPIEQAFLEKLWQAHKL-NPLTQVML 150 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D L D L +R G+P H A+GDA ATA + Sbjct: 151 DTLAMERDTQMRKQYMLTSDA---FRLGECRKRYGLPDYQGHDALGDAQATAELLLAQLN 207 Query: 182 TAA 184 A Sbjct: 208 HAG 210 >UniRef50_Q041D1 DNA polymerase III, alpha subunit (Gram-positive type) n=20 Tax=Lactobacillus RepID=Q041D1_LACGA Length = 320 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 14/186 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGY 60 + ++D+ETTGL E+G L V GE + F + ++NG Sbjct: 30 PENYTLIDVETTGLSPYRDRITEMGGLKVRHGEVVATFSELVKFPDSNKVPTFITKLNGI 89 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + + L A + ++++ + G N FD V Y + Sbjct: 90 DEAAIEEKGL---PVQEAIKKYREFIGSDPIVGYNVNFDLNFVYDLAEKYHLTVLNNDY- 145 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + Y + L R+ + H + D T FD Sbjct: 146 ---------VDVYRLARSFYPQERHNRLLDCMHRMNIAENQEHRGLDDCLDTKKVFDEFH 196 Query: 181 HTAAAH 186 Sbjct: 197 KLFKQE 202 >UniRef50_D0JBJ5 DNA polymerase III subunit epsilon n=1 Tax=Blattabacterium sp. (Blattella germanica) str. Bge RepID=D0JBJ5_BLASB Length = 256 Score = 116 bits (292), Expect = 3e-25, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 19/186 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + + D+E TG++ +E+ +L + + V P++ I+G Sbjct: 5 LHRPICFFDIEATGINIGKDRIIEISILKIFPNGNQEDKT-WLVCPGIPIPPQSTAIHGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + + + + AG N FD I+A + + + F Sbjct: 64 KNEDVEGKLK----FKDVAFSIFKMIENTDLAGYNSNRFDIPILAEEMLRAGISFDIKKH 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDM 178 + + E L A + ++ HS+ DA AT Sbjct: 120 KTIDVQVI------------FHKMEPRTLSAAYKYYCSKELIKAHSSKEDAFATYEILLS 167 Query: 179 LRHTAA 184 Sbjct: 168 QLEKYE 173 >UniRef50_A4IMY1 Putative uncharacterized protein n=1 Tax=Geobacillus thermodenitrificans NG80-2 RepID=A4IMY1_GEOTN Length = 242 Score = 116 bits (292), Expect = 3e-25, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 51/183 (27%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++D+ETTG + + G + V+ ++ G Sbjct: 61 PFVIIDMETTGFSPQQGDEILAMAAAKTVNG-LVTGTYMTLVKPEKPIPEHISDLTGIEA 119 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + A A ++ G + D + + + + Sbjct: 120 KDV----VFAPPLAEALRTFVPFISAGVLVGYHIGHDLSFLRHVLWRH--------YRQK 167 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 W R D+ + LD G+ RH+A GD A + +L Sbjct: 168 WSWRFVDMQPIVSLVR----HPCPTLDDALACYGIDCPRRHTADGDVEAMVKLWAILLGE 223 Query: 183 AAA 185 Sbjct: 224 LRE 226 >UniRef50_C2D7T6 3'-5' exonuclease and CRISPR-associated Cas2 family protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7T6_9ACTN Length = 337 Score = 116 bits (292), Expect = 3e-25, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 65/181 (35%), Gaps = 14/181 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ +++D+ET+GL+ +E+G + + + + I P ++ G + Sbjct: 168 KKFVILDIETSGLNETDDKIIEIGAIRICDKQVDDYQCLIK-RDSLNLSPAITQLTGLTD 226 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + A ++ ++ G N AFD + + + + + Sbjct: 227 IELANRGVNPNL---ALNGLKQFIGHLPVLGYNIAFDMRFINNELRSMNEEL-------L 276 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + K+ + E LD V + G+ H A+GDA A + Sbjct: 277 DNREIDVMRFIKKEKMFL---ESYALDNVLKVYGISATVPHRALGDAKLIAKLALKVNKI 333 Query: 183 A 183 Sbjct: 334 L 334 >UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate division TM7 RepID=A5KSP8_9BACT Length = 476 Score = 116 bits (292), Expect = 3e-25, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 49/200 (24%), Gaps = 15/200 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH---ITVEQLAAADPKAMEI 57 MA+ DLET+GLD ++ P + + P A+ + Sbjct: 5 MAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPSPDAVMV 64 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + + E + E + + T +N FD + Sbjct: 65 TGITPQKTHEEGIAEAEFIKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNFHD-PYE 123 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPT----------ELEGLDAVAERLGVPVVNRHSAIG 167 + R L + L+ + + H A+ Sbjct: 124 WAWKDGRSRWDLLDVVRMTRALRPGGIVWPVDKSDKPTNRLELLTSENNLEHSQAHDALS 183 Query: 168 DAAATAFCFDMLRHTAAAHL 187 D A + L Sbjct: 184 DVYALIAI-TRMVRDKQPKL 202 >UniRef50_Q6LGI0 Putative DNA polymerase III n=1 Tax=Photobacterium profundum RepID=Q6LGI0_PHOPR Length = 236 Score = 116 bits (291), Expect = 4e-25, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 53/184 (28%), Gaps = 15/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYE 62 + +D ETTGL+ + +G++N+ T I + ++ +IN Sbjct: 50 NFVAIDFETTGLNCQQDKILSIGVVNLTTDMIELASSEEIYIRHGEFIKAESAQINEITP 109 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L++ A + + ++G + + Sbjct: 110 KQLHKGV----DIDTAIDWLLERIQGKIVLAHCANIEKQFIESYLK-------DTYQLNT 158 Query: 123 WHHRLADLAAYAAGKLNIDP---TELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + D LD + + +P HSA DA A A F + Sbjct: 159 FPCYFIDTLQLEKHHSYAGKSNQHTSYQLDDLRQYHNLPAYYSHSAASDAVACAELFLVQ 218 Query: 180 RHTA 183 Sbjct: 219 VKKL 222 >UniRef50_C1SJH8 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJH8_9BACT Length = 179 Score = 116 bits (291), Expect = 4e-25, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 45/164 (27%), Gaps = 18/164 (10%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLY--FVPHITVEQLAAADPKAMEINGY 60 V D ETTG+ D A +E+G + V G L + A A ++G Sbjct: 10 TFTVFDTETTGMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLINPKAPIPYNAYSVHGI 69 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + A N FD + V+ + + Sbjct: 70 STAMVADK----PEIKDVLPGFFSFTENTIIAAHNARFDCSFVSHHSAECCIVNPMTKI- 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RH 163 + K + L + + + RH Sbjct: 125 ---------VDTVKLAKSAHSGLKSYSLGNLIHYFSMDIPPSRH 159 >UniRef50_D2Q9U9 DNA polymerase III, epsilon subunit n=2 Tax=Bifidobacterium dentium RepID=D2Q9U9_9BIFI Length = 212 Score = 116 bits (291), Expect = 4e-25, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 13/186 (6%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTG-ESLYFVPHITVEQLAAADPKAMEINGY 60 +++D ETTGL + A +E+G L V G E+ V+ + G Sbjct: 23 DTYVMLDTETTGLHPEEGATIIEIGALLVTPGNENARPRFEQLVDPQRPLPEFISRLTGI 82 Query: 61 YERGLYREALTEQQ---TAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 + L + + +V + T N FD + + + Sbjct: 83 SDGMLRDKPTADAAMLRFHQWLDDVWPTGKPLTIIAHNAEFDIGFLDAAERAHDPDANEF 142 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L + + + V H A+ DA + Sbjct: 143 D--------CRWLCTKEMSWELNPRKRHHRVSDLIVDYRIGDVEEHRALSDAIQEQMIYR 194 Query: 178 MLRHTA 183 L A Sbjct: 195 ALCREA 200 >UniRef50_B4TI94 Exonuclease n=2 Tax=root RepID=B4TI94_SALHS Length = 198 Score = 116 bits (291), Expect = 4e-25, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 60/180 (33%), Gaps = 14/180 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTGL D A VE+ +++ G L V+ +A+ I+G + Sbjct: 25 LFIDTETTGLG-DDAEIVEICIID-SHGFILLN---TLVKPTKPIPDEAIAIHGITNEMV 79 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 G V++ +R F N +D ++ + P + H Sbjct: 80 AYA----PAWTDICGAVEELIRRFGFVIYNADYDLRLIRQTYALNGRPSEGAPWM-LAAH 134 Query: 126 RLADLAAYAAGK---LNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLRH 181 + + YA + + L A GV + H A+ D T L Sbjct: 135 SVCAMKLYAEYRGEPGKYHGYKWHKLVDAAAHEGVVIEGKAHRALADCKMTLGVIKALAQ 194 >UniRef50_Q2QCR8 Putative uncharacterized protein n=1 Tax=Pseudomonas sp. CT14 RepID=Q2QCR8_9PSED Length = 197 Score = 116 bits (290), Expect = 5e-25, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 51/175 (29%), Gaps = 9/175 (5%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYR 67 +D ETTG+ D E+ +L+ L + + +A I+ + Sbjct: 16 LDTETTGVG-DGDEVCEITILDASGTPLL----NTLIRPTQPIPAEATGIHRITNDMVA- 69 Query: 68 EALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRL 127 T + + G T N +FD ++++ + + L Sbjct: 70 ---TAPAWPEIAEQYASIVSGRTVVAYNASFDERLLSQTHQRHGLVAPALATACAMLLYA 126 Query: 128 ADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + G+ L A GV H ++ DA T L Sbjct: 127 EWHGEWVEGRYGAWQWRWIKLIEAARACGVLEDGAHRSLADARMTLGVLRYLHKR 181 >UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteobacteria RepID=Q1QT40_CHRSD Length = 495 Score = 116 bits (290), Expect = 5e-25, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 52/196 (26%), Gaps = 12/196 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEIN 58 + D ET G D P + + D+ + + P+A I Sbjct: 7 EPTFLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHPQACLIT 66 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSPL 117 G + R L E + A + + FD + + P+S Sbjct: 67 GITPQAARRRGLAEIEFAARIHAEMSVPGTCSLGYNTLRFDDEVSRHLFYRNFIDPYSRE 126 Query: 118 TVGRVWHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 L D+ D L+ + G+ H A+ D Sbjct: 127 WQNGNSRWDLIDVVRTYHALRPDGIEWPTREDGAPSFRLEDLTAANGIEHAGAHDALADV 186 Query: 170 AATAFCFDMLRHTAAA 185 AT +L+ A Sbjct: 187 RATIELARLLKARNAQ 202 >UniRef50_C2KP37 DNA polymerase III epsilon subunit n=3 Tax=Mobiluncus RepID=C2KP37_9ACTO Length = 258 Score = 116 bits (290), Expect = 5e-25, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 55/184 (29%), Gaps = 7/184 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + D ETTG+ L+ GE + + KA E+NG + Sbjct: 33 EWLGFDTETTGVWVRRDRIATASLIRRVGGE--DTAYNWVINPGVPMPVKASEVNGLTDE 90 Query: 64 GLYREAL-TEQQTAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + A E+ G G N AFD I+ + Y +P +G Sbjct: 91 YLEKHGEQPAVALAEIASELAAAMSSGVPVVGFNVAFDFEILEAELARYELPTLRARLGG 150 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 + L L+ L V E G+ H A D AT + Sbjct: 151 RIAPVIDPLVLDR--TLDRYRRGKRKLATVCEAYGLDGNRAFHQADSDVTATLDLLGAMI 208 Query: 181 HTAA 184 Sbjct: 209 ERYE 212 >UniRef50_B8J155 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J155_DESDA Length = 176 Score = 116 bits (290), Expect = 5e-25, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 21/176 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ET+G Y VGL ++ G + V ++ EI+G L Sbjct: 10 VAIDFETSG--YAAHSACAVGLARIEDGRVTE-QFYSLVRPPSSRVLF-TEIHGLTWPML 65 Query: 66 YREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 W +++ ++ N +FD ++ Sbjct: 66 KNA----PVFGDVWPQMESFMKGAGVLLAHNASFDRRVLLACCREAGAGVPEQHF----- 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + ++ + L+ V E G+ + H A DAAA A + LR Sbjct: 117 -----LCTLKGARRSLP-LPSKKLNHVCEHFGIALE-HHHAGSDAAACAEVYLHLR 165 >UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 Tax=Haliangium ochraceum DSM 14365 RepID=D0LN23_HALO1 Length = 180 Score = 116 bits (290), Expect = 6e-25, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 61/181 (33%), Gaps = 13/181 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAA---DPKAMEING 59 + L+ +D ETTGLD + +E+ + V + + DP+A+E+NG Sbjct: 2 QPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNG 61 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 Y R A E+ L G AG N AFD + L Sbjct: 62 YRRRAWADAV----SLGDAMAELAPMLEGAVLAGHNVAFDRRFLEAAWDCVGHRPENLD- 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 H D AA A L + L V LGV H A D A+ L Sbjct: 117 -----HHALDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDVRASLGVAQRL 171 Query: 180 R 180 Sbjct: 172 L 172 >UniRef50_A6W3F5 Exonuclease RNase T and DNA polymerase III n=2 Tax=Marinomonas RepID=A6W3F5_MARMS Length = 236 Score = 116 bits (290), Expect = 6e-25, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 56/183 (30%), Gaps = 11/183 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY--FVPHITVEQLAAADPKAMEIN 58 L+ +DLETTGLD + +GL+ + + + + + + + +++ I+ Sbjct: 47 QDTPLLALDLETTGLDPSQDEIISLGLIPL-NHKIIRCQGAKYWMAKPECSLNAESVTIH 105 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV-ARQRVTYSMPFSPL 117 L + E+ L A + + Y P Sbjct: 106 EITHSELEEA----PRLHAILDEILLALTHQVIVVHCVAIERQFLLKASMKIYGYPL--- 158 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + + LDA +R +P H A+ DA ++A Sbjct: 159 YFPVLDTMDIERQVTFKPWWKRFGRRPSLRLDACRQRYKLPRYKAHHALTDALSSAELLQ 218 Query: 178 MLR 180 Sbjct: 219 AQI 221 >UniRef50_A7I1F1 DNA polymerase III subunit epsilon n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I1F1_CAMHC Length = 262 Score = 116 bits (290), Expect = 6e-25, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 55/182 (30%), Gaps = 19/182 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 VD+ET G D +E+G + V E L T + +E+ G + Sbjct: 72 EADFCFVDIETNG-GIDKGQIIEIGAIKVRAKEIL--NTFKTFVYASNIPENIVELTGIH 128 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + +L + F N FD ++ G Sbjct: 129 TNDLKNA----PHLSNVLENFRLFLGDSVFVAHNVKFDYGFISESLQKIG-------FGG 177 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + R+ + + GL ++ E LG+ H A DA + F Sbjct: 178 LLNRRIDTIDLAKRTIA----AQKYGLSSLKELLGIENE-HHRAFSDALSCYEIFKFCTQ 232 Query: 182 TA 183 Sbjct: 233 KL 234 >UniRef50_B1JN65 Exonuclease RNase T and DNA polymerase III n=4 Tax=Enterobacteriaceae RepID=B1JN65_YERPY Length = 217 Score = 115 bits (289), Expect = 6e-25, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 11/181 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +++D ETTGL D A +E+ +++ L V+ + A +A I+G Sbjct: 41 LKRNYLILDTETTGLGND-AEIIEISIIDCTGKILLD----TLVKPIKAIPAEATAIHGI 95 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + T N +FDS ++ + + P Sbjct: 96 TNDIVADA----PTWRDIHWQFMVLTNDRTLLIYNASFDSRLIFQTAAANNCPVPEKKYI 151 Query: 121 RVWHHRLADLAAYA-AGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDM 178 + A Y + + + L AE+ GV + H A+ D T Sbjct: 152 FDAECVMESYAKYYGQWDQKRNKFKWQRLSNAAEQQGVAIDGTPHRALADCKTTLGIIRA 211 Query: 179 L 179 + Sbjct: 212 M 212 >UniRef50_Q1QZ77 Exonuclease n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QZ77_CHRSD Length = 205 Score = 115 bits (289), Expect = 6e-25, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 12/185 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 ++I +D ETT LD A V + + V G L + +++ + ++ I+G Sbjct: 30 EVIALDCETTDLDPRQADLVAIAAVKVRDGRVLTSESLDLRLQRPDSLSSDSIRIHGLRG 89 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYSMPFSPLTVGR 121 L + A + D++ G +D ++ R T+ Sbjct: 90 VDLLGG----EALGDALNTLLDFIGNRPLVGWCIDYDVAVINRHLRPRTGFDLPNRTID- 144 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L A + D +A++E LGVPV+ RH+A+GDA TA + L Sbjct: 145 -----VCRLYARERRRAQPDVEPDLRFEAMSEALGVPVMGRHTALGDAVTTALMYLRLCR 199 Query: 182 TAAAH 186 AA Sbjct: 200 GQAAS 204 >UniRef50_Q05FQ3 DNA polymerase III epsilon subunit n=1 Tax=Candidatus Carsonella ruddii PV RepID=Q05FQ3_CARRP Length = 181 Score = 115 bits (289), Expect = 7e-25, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 14/179 (7%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K++I +D+ETTGL + +E+G + V G V H A ++G Sbjct: 2 KRIIFLDVETTGLFVEHGDRIIEIGCVEVINGHLTGRVFHSYFNPEVKITQGAFNVHGIK 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L L + E ++ +T N FD + ++ + + Sbjct: 62 DDFL----LLKPMFYEKINEFIGFINNSTIIAHNAKFDINFINKEIYLTNFKIKKIQNYA 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG-VPVVNR-HSAIGDAAATAFCFDM 178 L + + + L+ + + + R H A+ DA A Sbjct: 118 NI------LDSLLLFRKLYPRKKN-NLNDLCLKFNLIKNKKRIHGALNDAFLLAVLIIK 169 >UniRef50_C5V7D5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7D5_9PROT Length = 303 Score = 115 bits (289), Expect = 8e-25, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 27/178 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTG------ESLYFVPHITVEQLAAADPKAMEING 59 +VVD ETTG++ +E+G++ + + + A P++ E++G Sbjct: 43 VVVDTETTGINSAQDAIIELGMVLFEYDPDTGEAGRVLGSFDQLEDPGMAIPPESTEVHG 102 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + + A + N FD + ++ + Sbjct: 103 ITDEMVQGKRIDDAAVAAFLD------GVSVVIAHNSKFDRVFLEKRLSVFE-------- 148 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L + A + LD ++ + G H A GD A Sbjct: 149 ------TLPWGCSLAQVDWRAEGIGSAKLDYISYQYGF-FYEAHRAEGDCYALLEILQ 199 >UniRef50_C6W9X5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W9X5_ACTMD Length = 262 Score = 115 bits (288), Expect = 8e-25, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 57/184 (30%), Gaps = 13/184 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG----ESLYFVPHITVEQLAAADPKAMEING 59 L+ +DLETT ++ V ++ + G + V + A I+G Sbjct: 14 PLLALDLETTDVEPRRDRIVTASVVVITPGAEGAKPDVRVRTWLADPGVPIPASATAIHG 73 Query: 60 YYERGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 E + + W N FD T++ + + + + Sbjct: 74 ISTEQARAEGRPVGEVVAEVEALLAELWTASTPLCAFNAPFDLTMLDAELLRHHGRSLRV 133 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + V + L+ L AV E GV + H++ GDA A A Sbjct: 134 SGPVVDPLCVDR-------ALDPRRVGKRTLGAVCEHHGVRLEGAHTSAGDALAAARLAW 186 Query: 178 MLRH 181 L Sbjct: 187 KLAR 190 >UniRef50_Q9K697 BH3832 protein n=4 Tax=Bacillus RepID=Q9K697_BACHD Length = 265 Score = 115 bits (288), Expect = 9e-25, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 19/176 (10%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 ++V DLET+G D + +G + V +V P+ + E+ G Sbjct: 79 PVVVFDLETSGFYPDQGDRILSIGAVKVVGLTIQEEETFYSVVHTDTVPPENILELTGLS 138 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVAR-QRVTYSMPFSPLTVG 120 L ++R +T + + + ++ T +PF Sbjct: 139 VEELEAA----PPLTSVLESFYAFIRHSTLVAHHASHEKAFMSHVTWQTMKLPFE----- 189 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 HR+ D + P EL LD +PV NRH A D+ TA + Sbjct: 190 ----HRVIDTSFLTKIVA---PQELVTLDDCCAYYSIPVQNRHHAFEDSLMTAKLW 238 >UniRef50_Q4V274 Possible exonuclease n=3 Tax=Bacillus cereus RepID=Q4V274_BACCZ Length = 287 Score = 114 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 24/179 (13%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGL +E+ ++++ TG+ L V+ +A I+G + Sbjct: 131 FVILDTETTGLT-LRDQIIEICVIDL-TGKILLNS---LVKPTINIPAEAASIHGITNKM 185 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 ++ + E+ + G T N FD ++ + ++ F Sbjct: 186 VHDA----PSWIEIYKELCEVTAGKTLLIYNAEFDLGMIESTCIANNVEFKN-------- 233 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +D L E L + H A+ D A L++ Sbjct: 234 --FKSTCIMKMYADYVDSKRWISLGDATE-LTIK----HRAVADCFAVLELLQQLKNNH 285 >UniRef50_C7LT45 Exonuclease RNase T and DNA polymerase III n=4 Tax=Bacteria RepID=C7LT45_DESBD Length = 177 Score = 114 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 19/182 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ + +D ET D VGL V GE + + + + P + ++G + Sbjct: 4 SRAYVAIDFET--ADSCRDSACAVGLTKVQGGEIVDRLYGLIRPPRSRFSPFCVNVHGIH 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + W E + + A N +FD +++ +P L Sbjct: 62 WSDVKDA----PAFREFWIENAGFLEGADFLAAHNASFDRSVLGACCTMAGLPAPSLPF- 116 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L V LG+ + N H A DA A A Sbjct: 117 ---------VCTVELARNQW-NLRPTKLPDVCRHLGLDL-NHHHAGSDAEACARIVMAAV 165 Query: 181 HT 182 Sbjct: 166 DE 167 >UniRef50_Q057S0 DNA polymerase III, e subunit n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057S0_BUCCC Length = 231 Score = 114 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 64/188 (34%), Gaps = 32/188 (17%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD------------TGESLYFVPHITVEQLAAADPK 53 + +D+ETTG++ G + ++ + H + + + Sbjct: 9 VFLDIETTGMNKY-------GCIYLNHKIIEIGIIETINRKYTGRYIHYYLYPQRSIESS 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 A +I+G E L + + E+ ++++ + N FD + + + ++ Sbjct: 62 AYKIHGISESFLSNK----PTFKDIYKEIFNFIKNSEIIVHNSNFDISFLDYEFFLLNIG 117 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAA 171 + + + + LDA+ R + +NR HSA+ DA Sbjct: 118 INKIKTFSTI------TDTLFIARKLFPGKKN-NLDALCARYKITNINRNFHSALLDAKI 170 Query: 172 TAFCFDML 179 + + Sbjct: 171 LMKLYMYM 178 >UniRef50_P41060 Uncharacterized exonuclease CP81 n=12 Tax=root RepID=CP81_BP186 Length = 194 Score = 114 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 59/188 (31%), Gaps = 12/188 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + I +D ETTGL D A VE+ L++ G + V+ +A I+G Sbjct: 16 LEDDRIFIDTETTGLG-DDAEIVEICLID-SAGFIMLN---TLVKPTKPIPAEATAIHGI 70 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + G V F N +D+ ++ + Y + Sbjct: 71 TDEMV----MYAPTWKDIHGAVASLFFEYGFVIYNADYDTRLIYQTAKLYGLENDGFCYF 126 Query: 121 RVWH--HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFD 177 + A Y + L A GV V H A+ D T D Sbjct: 127 LNERSACAMMLYAEYRGEPGRFKGYKWHKLVDAAAHEGVSVEGKAHRALADCRMTLGIID 186 Query: 178 MLRHTAAA 185 L AA Sbjct: 187 ALAKGGAA 194 >UniRef50_C1D0R4 Putative DNA-directed DNA polymerase (DNA polymerase III, subunit) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0R4_DEIDV Length = 204 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 15/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEING 59 + L+ +D E+TG++ ++VGL +D G V + I+G Sbjct: 9 LEASLVALDFESTGMNPAHDEVIQVGLAPLDAGAVDLGGAWAQWVRPTRPFRADTVAIHG 68 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E+ L+G A + + R + T+ Sbjct: 69 LSYELLQEA----PAISTVRLELGARLQGRVLVAHYAALELGFLKRWGLR-----PAATL 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + D + A + + L A+A R GV V H A+ DA TA F +L Sbjct: 120 DTLMLALALDRQSTATARRDA-----YTLSALARRFGVEVYGEHDALADALITAQVFLVL 174 Query: 180 RHTAA 184 H Sbjct: 175 AHELE 179 >UniRef50_D1J1T2 Whole genome shotgun sequence of line PN40024, scaffold_60.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1J1T2_VITVI Length = 332 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 25/188 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +IV D ETTGL +E+GL ++ GE+ V ++G Sbjct: 127 TVIVFDTETTGLSRANDRIIEIGLQDLGGGEN--STFQTLVNPERIVP--NPHVHGITTY 182 Query: 64 GLYREALTEQQTAVAWGEVQDWL-------RGNTFAGSNP-AFDSTIVARQRVTYSMPFS 115 + R + + ++ + N +FD + + + Sbjct: 183 MVNR--PDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVP 240 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDP---TELEGLDAVAERLGVPVVN-RHSAIGDAAA 171 P + R D A + L A+ E +P+V H + D Sbjct: 241 P-------NWRFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYT 293 Query: 172 TAFCFDML 179 + ML Sbjct: 294 LSQVLQML 301 >UniRef50_C9LN05 DNA polymerase III PolC-type n=1 Tax=Dialister invisus DSM 15470 RepID=C9LN05_9FIRM Length = 196 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 56/183 (30%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+D+ETTG+ + E+ L V +GE H V+ + + + G Sbjct: 30 TYTVMDIETTGM---YSDITEIAALCVVSGEI-RDTFHTLVKAKGPIEKRVERLTGITSD 85 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ G G D ++ R P + Sbjct: 86 MLEEQ----PPIDDVLPIFMTFIEGFPLVGHGLDSDLIVIDRNLKAVGKP--------LV 133 Query: 124 HHRLADLAAYAAGKLNI--DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D + A L + A+AE +P H A+ D A F+ L Sbjct: 134 TNDYIDTHSLAKLLLPEREGEHRKYSVKALAEYYELPCSTFHRAMDDCMAEKMLFERLLA 193 Query: 182 TAA 184 Sbjct: 194 EWK 196 >UniRef50_A3UR50 DNA polymerase III, epsilon chain n=6 Tax=Vibrionales RepID=A3UR50_VIBSP Length = 238 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 13/182 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYE 62 IV+DLETTGLD + L + +G ++V G HI ++ + + + IN Sbjct: 50 DYIVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIYLDNDSQINAETAVINHITP 109 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A + +G + +++ + + + Sbjct: 110 QMLEEG----ASIHDAMLTFFEAAKGKIIVAHACMVEERFISQYLLRC------YGLRAI 159 Query: 123 WHHRLADLAAYA--AGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L L ++ L ER G+P N H+A+ DA +TA F + Sbjct: 160 PLLWLDTLCIEKSMEKAISNHEEVDLTLAGTRERYGLPEYNNHNALADAVSTAELFLAQQ 219 Query: 181 HT 182 Sbjct: 220 KR 221 >UniRef50_Q7MCI1 DNA polymerase III, epsilon subunit n=6 Tax=Vibrio RepID=Q7MCI1_VIBVY Length = 239 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 13/182 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ETTGLD + +G++++ G +L I + A ++ ING + Sbjct: 53 FLALDFETTGLDAKHDKILSIGMVDLTLEGINLSSAEEILLNHGAYIKAESARINGLTPQ 112 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + +G + + + + + ++ Sbjct: 113 ALEQGC----SLEQGMMRLFERAQGKVLLAHSAIIEQGFLQAFAQQH------FQLAKLP 162 Query: 124 HHRLADLAAYAA--GKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 H + L LD + +P + HSA DA A A F + Sbjct: 163 CHFVDTLQIEKRFSYAGKSGQRSSFQLDDLRRCYHLPDYHSHSAASDALACAELFIVQSK 222 Query: 182 TA 183 Sbjct: 223 KL 224 >UniRef50_A5U937 DNA polymerase III subunit epsilon DnaQ n=20 Tax=Mycobacterium RepID=A5U937_MYCTA Length = 329 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 55/177 (31%), Gaps = 16/177 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D+ET+G A + + +L +D L + DP ++G Sbjct: 16 WAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNP--KVDPGPTHVHGLTAAM 73 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + Q A GEV D LRG T N AFD +A + V Sbjct: 74 LDGQ----PQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELPVDFV----- 124 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + L+ +A GVP H A D Sbjct: 125 -----MCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALE 176 >UniRef50_Q11Z63 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11Z63_CYTH3 Length = 183 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 17/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +D ET + VG+ V+ G+ + + + ++I+G Sbjct: 2 NFTALDFET--ANTHKTSICAVGMAIVEDGKVVKTISKLIKPVPDFYSYWNVQIHGITPD 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 W E++ ++ +T N AFD + T+ + F Sbjct: 60 MTADA----PYFIDVWQELKQYIDYSTLVAHNAAFDVGALRSILTTHEVSFPKTDYF--- 112 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + + + E L V + VP+ N H A DA A Sbjct: 113 -------CSCSVSRKVFKEIENHKLSTVCRHIDVPL-NHHEAESDAIGAAQIIIKAGERL 164 Query: 184 AAH 186 A+ Sbjct: 165 GAN 167 >UniRef50_D0I9Y6 DNA polymerase III epsilon subunit n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I9Y6_VIBHO Length = 239 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 12/180 (6%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYERG 64 +V+D ET+GLD + + +G + + + HI V Q ++ I+ Sbjct: 54 LVLDFETSGLDPEQDKVLSMGWVEIRQSQIRLSSARHILVNQPVLNGYESARIHHLRPET 113 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L ++E A+ ++ D ++G + +AR + + Sbjct: 114 LRNCGVSE---HHAFSQLFDVMKGKVIVAHGSVIEKRFLARYLTLHYGQINLP------- 163 Query: 125 HRLADLAAYAAGKLNIDP-TELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D + + L +V G+P H+A+ DA ATA + H Sbjct: 164 LVWLDTLKIEQYREQLRQVCRDWRLSSVRAAHGLPDYQAHNALNDAIATAELYLAQVHRL 223 >UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group RepID=Q3B5G9_PELLD Length = 197 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 63/187 (33%), Gaps = 9/187 (4%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 K+++ DLETTG+D D ++ L G F + + A + +A+ ++G+ Sbjct: 2 KKVLWFDLETTGIDPDRHGIIQFAGLAEIEGVVAESFEIKMQPHEGAMIEDEALAVSGFS 61 Query: 62 ERGLYREALTEQQTAVAWGEV------QDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 + + G + + AG N FD ++R Y Sbjct: 62 REQIASFTPHAEAYKAIDGFLARHVSRFERNDKFYPAGYNVRFDLDFLSRMFRRYDQYGL 121 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + L + L V E LGV + N H A+ D AT Sbjct: 122 GSFINWRSLDPQPILNIME--YMGRLSLPNHKLQTVCEHLGVRLENAHDALSDIKATREL 179 Query: 176 FDMLRHT 182 ++L Sbjct: 180 MELLMEH 186 >UniRef50_C0WBN5 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WBN5_9FIRM Length = 228 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 14/180 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++V DLE G Y +E+ + VD V + + E+ G Sbjct: 54 DMVVFDLELAG--YAEDDIIEIAAIKVDFLGRQTAVFRELIRPRTKISKRVTEMTGITRD 111 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAF-DSTIVARQRVTYSMPFSPLTVGRV 122 + + Q ++ G+ G + + D + Y M Sbjct: 112 MVKDK----PQLPEVLKRFFAFVEGSAVMGHDIGYNDIMAINLACRRYGMKAFRPPFLDT 167 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L L+ A GL A+ +P+ H A+ D AT ++ + Sbjct: 168 SRLILRHLSREAV-------GGKTGLAALLAHFNIPIHRHHEALADCEATLLLYEAVAKE 220 >UniRef50_C8NL81 DNA polymerase III, epsilon subunit n=7 Tax=Corynebacterium RepID=C8NL81_COREF Length = 227 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 56/184 (30%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAA--DPKAMEINGYY 61 L+ VD+ETTGL D V +G + V V + + I+ Sbjct: 44 PLLAVDVETTGLKPDEHQIVSIGWVPVTGRVIELGGAGYRVIRGTEGFTVGSSAVIHRLT 103 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPLT 118 + L A E+ L+G + ++ + Y + + Sbjct: 104 DDELAAGV----DLEDALVELLAALKGRVLLAHFAPMEQNFLSAACLKYFDAPLQLPVVD 159 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + ++ E L V R G+P + H A+ DA A A + Sbjct: 160 TFAIERRHMEKMST-------YPRGEDLRLARVRTRYGLPQYSNHQALTDALACAELYLA 212 Query: 179 LRHT 182 Sbjct: 213 QIRE 216 >UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus thermophilus RepID=Q746C7_THET2 Length = 1649 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 61/188 (32%), Gaps = 22/188 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +DLE T D A +EV + GE F ++ ++ D + ++ G Sbjct: 9 VALDLEATSTDPSEAEVLEVAAV---DGEGRVFHRYLATQRPLPPDHEVFQLTGIPYEEY 65 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A E+ +L G G N +D ++ R +P Sbjct: 66 EAKKVAP---KEALEELLAFLGGRPLLGHNLLRYDLPLLQRHLEEAGLP----------R 112 Query: 125 HRLADLAAYAAGKLNID----PTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDML 179 + L L E L + L G P+ H A+ DA AT F L Sbjct: 113 WQGEALDTLRLAHLLFPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQATLAVFHRL 172 Query: 180 RHTAAAHL 187 L Sbjct: 173 LDRGRRAL 180 >UniRef50_C0YRX4 Possible DNA-directed DNA polymerase III n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YRX4_9FLAO Length = 184 Score = 113 bits (284), Expect = 3e-24, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 18/173 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYYE 62 +D ET ++ + E+G+ V + + + + ++G Sbjct: 2 DFCAIDFET--ATHEKSSACEMGICVVQDSKIVETKTWLIKPPSFPYFSKFNIAVHGIQP 59 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + W E QD + G+ N FD++++ Y M Sbjct: 60 EDVKDA----PTFDEIWYEAQDMMYGSLMIAHNAGFDASVLRGCLEHYGM---------- 105 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + +L L + K + + GL +AE + H A DA A Sbjct: 106 FTPKLNYLCSIQLAKKSWNYLPKYGLKPLAEYHKIDFT-HHRAGADAEVCAKI 157 >UniRef50_B9NP01 Exonuclease n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NP01_9RHOB Length = 334 Score = 113 bits (284), Expect = 3e-24, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 55/183 (30%), Gaps = 17/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D+ET + D + ++G V G+ + + DP + I+G Sbjct: 45 RFVALDVET--ANSDASSICQIGFA-VSDGQGTILTFGTLIHPETSFDPFNIGIHGID-- 99 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 T + +L + + +FD V Y +P Sbjct: 100 --ADAVSTAPVFPEVLQTFRAFLERHPLVQHS-SFDKRAVNAACDRYDIPKLRSNWH--- 153 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + + GL + E LG+ H AI DA A A L A Sbjct: 154 ----DSVVMARRAWPELKGNGGHGLANLKEVLGLEFD-HHDAIEDAKAAAHVVL-LAEEA 207 Query: 184 AAH 186 Sbjct: 208 TGK 210 >UniRef50_Q6UAU3 Gp39 n=1 Tax=Klebsiella phage phiKO2 RepID=Q6UAU3_9CAUD Length = 202 Score = 113 bits (284), Expect = 3e-24, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 21/187 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTGL D +E+ ++N+ GE L V+ P+A +IN + Sbjct: 22 VIIDTETTGL-MDFDEIIEITIINMR-GEILLNS---LVKPSRPIPPEATKINHITNEMV 76 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS---------- 115 + + V + + N +FD+ ++ + + Sbjct: 77 ADA----PTWSDVFPAVLKIIWKYKWLAWNSSFDARLMVQSCLKTWFFDDLKPHRITSII 132 Query: 116 -PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + + D Y + + L A R GV H A+ D Sbjct: 133 MAIETRHIDAKAVYD-QWYGEFDEKRKNFKRQSLATAAARHGVSTAGAHRALADCLMILG 191 Query: 175 CFDMLRH 181 + + Sbjct: 192 VLNQICQ 198 >UniRef50_A6DRG8 Putative exonuclease n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRG8_9BACT Length = 165 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D ET V ++ V+ G + + + ++++G R Sbjct: 2 DFVAIDFET--ATAKRNSACAVAIITVEKGVIVDEYSELIQPPNNEYSWRNIDVHGIEPR 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ + E++ L G N +FD +++ R Y + ++ L V W Sbjct: 60 H----TMYKEDFEDLYPEIRKRLTGKLVVAHNESFDRSVMTRSMEYYDLDYADLGVADRW 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + K + L+ + + G+P+ H A+ DA A A + ++ Sbjct: 116 ------VCTVKLYKAQ--GFKPAKLNILCDHFGIPLK-HHDALSDARACAELYKRVQEI 165 >UniRef50_UPI0001BC4EA4 exonuclease n=4 Tax=Fusobacterium RepID=UPI0001BC4EA4 Length = 186 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 62/186 (33%), Gaps = 8/186 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGYYE 62 +++ +D ETTGL Y + +++ + GE + + +A+ I + Sbjct: 2 KILYLDTETTGLTY-RSTIIQLAAIVEIDGEIKETINLYCAPFPDSDISEEALSITKFTR 60 Query: 63 RGLYREALT---EQQTAVAWGEVQDWL---RGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 +++ Q G+ D G N FD ++ + F Sbjct: 61 EEIFQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHNVKFDLDMLRNWAYRCNERFIA 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + TE L+ + + +P+ N H+A+ D A + Sbjct: 121 SYIDFKNEFDTLAFTKCLKILGRLPQTENNKLETLCQAFQIPLENAHNALADTIAAKDLY 180 Query: 177 DMLRHT 182 L++ Sbjct: 181 HYLQNK 186 >UniRef50_A9RDT8 Predicted protein n=6 Tax=Eukaryota RepID=A9RDT8_PHYPA Length = 1960 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 52/194 (26%), Gaps = 23/194 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +IV D+ETTG + VE+ ++ G+ V + ++ Sbjct: 249 PTIIVFDIETTGFLKPGSKIVELACRDIAGGDCSTLE--TLVNPYQPVPIASTAVHKITS 306 Query: 63 RGLYREALTEQQTAVAWGEVQDW-------LRGNTFAGSNP-AFDSTIVARQRVTYSMPF 114 + R D+ N FD + ++ SM Sbjct: 307 EMVNR--DDIPSWTEVMTAFVDFVESRRIGNSDVILVAHNGRRFDVPFIMKECYECSMEI 364 Query: 115 SPLTVGRVWHHRLADLAAYAAG--KLNIDPTELEGLDAV-AERLGVPV-VNRHSAIGDAA 170 H D A K T+L L + + +P + H A D Sbjct: 365 P-------SHWYFIDTIDLAKAMLKKRFGKTKLYNLQFLYYDCYKLPRLEDAHRAGVDVD 417 Query: 171 ATAFCFDMLRHTAA 184 A F L Sbjct: 418 MLASVFGKLLMELE 431 >UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitrosomonas RepID=Q0AEW3_NITEC Length = 486 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 49/198 (24%), Gaps = 13/198 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEIN 58 L D ET+G + PV+ L D + + + P+A + Sbjct: 5 TSTLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLT 64 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSPL 117 G + L E + + FD + P++ Sbjct: 65 GITPQMAATRGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFALYRNFYDPYARE 124 Query: 118 TVGRVWHHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSAIGDA 169 + DLA L+ + G+ + H A+ D Sbjct: 125 WQSGNSRWDVIDLARMTFALRPEGINWPVNGEGKPSFRLEDITAANGLMHDSAHDALSDV 184 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 185 RATIAL-ARLLRDRQPRL 201 >UniRef50_C6P477 DNA polymerase III, epsilon subunit n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P477_9PROT Length = 235 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 13/175 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 +++VVD+ETTGL+ T + +G + V G V + + + + ++G Sbjct: 42 RVVVVDVETTGLNLITDTLISIGAVAVVNGRIALGDSFSVVLKQQESSDKENILVHGIS- 100 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 A ++L + + AFD T++ R Y +G Sbjct: 101 ---STAQRDGVDPVEALLTFLEYLGKSRLIAFHVAFDETMIRRAMRQY--------LGLS 149 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + H DLA LD R + + RH+A+ DA ATA F Sbjct: 150 FKHEWLDLAYVMPALNRSLMENHRVLDDWIGRFNIHIEARHNALADALATAQLFQ 204 >UniRef50_C5SA67 Exonuclease RNase T and DNA polymerase III n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SA67_CHRVI Length = 225 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 60/179 (33%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 + + +DLETTGLD L + VG + + E H V + + I+ + Sbjct: 40 EYLAIDLETTGLDQRQDLILSVGYVVLHGPEIDLSTARHHLVRIDRSIPEASAVIHQITD 99 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 T ++ GEV L G + + +++ +P + Sbjct: 100 DQAA----TGRELEDVLGEVLAALTGRVMIAHHAGIEQGFLSQACQRCWGRGLPLRLVDT 155 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H L + L A+ R +P H+A+ DA + A F Sbjct: 156 QTLAHRTL-------ERRQIPFKASDLRLHALTSRYNLPRHGAHNALSDALSAAELFLA 207 >UniRef50_C8WSI6 Exonuclease RNase T and DNA polymerase III n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WSI6_ALIAD Length = 218 Score = 113 bits (283), Expect = 4e-24, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 46/187 (24%), Gaps = 17/187 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAA---DPKAMEIN 58 V+DLET+G + V S + + E+ Sbjct: 27 EAPYFVLDLETSGFSPARDKILSVACATFSGWSSEPDESFYAIVRHDDVADVPSHIWELT 86 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + VA + G + + D + R Sbjct: 87 GLTPE----AMRDGEPLEVALRRALELGAGRVWVAHHVRHDLGFLQRA----------TD 132 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R + ++ LD E LG+PVV RH A D TA + Sbjct: 133 ALWRLRLRPLAMDTAVVAQVLARAARPLTLDEACEWLGIPVVGRHRADADVRMTAAVWRK 192 Query: 179 LRHTAAA 185 Sbjct: 193 EMELCGR 199 >UniRef50_D0RQQ0 DNA polymerase III, epsilon subunit n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQQ0_9RICK Length = 223 Score = 112 bits (282), Expect = 4e-24, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 16/184 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTGL +E+ + ++ H+ + A + +G + L Sbjct: 4 VLLDTETTGLSSVNDKIIEIACIEIEDHIPTGEKFHVFLNPEMEISQGAYDTHGISKEFL 63 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + ++ G N FD + ++ ++ Sbjct: 64 KNK----PKFNDVAKDFTKFIDGKKLVIHNAEFDLAFLNKELKEVG-------EKQISKD 112 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHTA 183 + D + + LDA+ +R + R HSA+ D A + L Sbjct: 113 NIVDTLNI--AREKFPGAQN-SLDALCKRFKIDNSRRQKHSALLDCELLAKVYIELFEKK 169 Query: 184 AAHL 187 Sbjct: 170 EPTF 173 >UniRef50_C6XW17 Exonuclease RNase T and DNA polymerase III n=74 Tax=cellular organisms RepID=C6XW17_PEDHD Length = 328 Score = 112 bits (282), Expect = 4e-24, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 21/185 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLN-VDTGESLYFVPHITVEQLAAADPKAMEING 59 + + L DLETTG++ VE+ +L + G L + A I+G Sbjct: 5 LKRPLAFFDLETTGVNVGADRIVEIAILKAMPDGSELIKTM--RINPEMPIPLYASLIHG 62 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLT 118 Y+ + E E+ D++ AG N FD ++ + + + F Sbjct: 63 IYDEHIANE----PIFKEVATELADFIGDADLAGYNSNRFDIPVLLEEFLRAGVDF---- 114 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFD 177 + + D+ E L A + ++N HSA D AT Sbjct: 115 --DMSDRKFVDVQNI------FHQMEQRTLRAAYKFYCNKDIINAHSAEADITATYQVLL 166 Query: 178 MLRHT 182 Sbjct: 167 AQIER 171 >UniRef50_D0B846 Exonuclease n=51 Tax=Alphaproteobacteria RepID=D0B846_BRUME Length = 332 Score = 112 bits (282), Expect = 5e-24, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 45/177 (25%), Gaps = 26/177 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV---DTGES--LYFVPHITVEQLAAADPKAMEINGY 60 +VVD ETTGL+ +E+G + D G + + + I G Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + E + N FD + R Sbjct: 134 TDEMVKGRTIPRDELDALIAE------ADIIIAHNAGFDRPFLER--------------L 173 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + E L + + G N H A D A Sbjct: 174 SIAFANKPWACSVKEIDWTARGFEGTKLGYLIGQSGY-FHNGHRAEDDCQALLAVLK 229 >UniRef50_A4HKS0 Exonuclease-like protein (Dna polymerase iii epsilon subunit-like exonuclease) n=1 Tax=Leishmania braziliensis RepID=A4HKS0_LEIBR Length = 292 Score = 112 bits (282), Expect = 5e-24, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 53/246 (21%), Gaps = 74/246 (30%) Query: 6 IVVDLETTGLDYDTALPVEVGLLN------------------------------------ 29 +VVDLETTG +EVG + Sbjct: 53 VVVDLETTGFSPTADEILEVGCVELRWTPSSRTTLTGPKDADPCAPPLEKQGSCGVLEGL 112 Query: 30 -VDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEV------ 82 G F ++ A ++G + A + + Sbjct: 113 WTRGGRV--FHRYVRPSHPRRITAAATAVHGITWEKVQHCAPWPVVASELVAYMTLIRAD 170 Query: 83 ----------------QDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + N FD+ +A WH + Sbjct: 171 ALFTKSVQVEAAQHGGHSAVHLPPLVAHNALFDARFLAHHLQRCGYQIF-------WHPQ 223 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVP-----VVNRHSAIGDAAATAFCFDMLRH 181 ++ LD + L + N H A+ DA TA F + Sbjct: 224 YPLTCTRQWAQVAYPHLAN-NLDTLCAFLSIDGAADRATNGHGALTDATLTALLFLRMCC 282 Query: 182 TAAAHL 187 Sbjct: 283 RWTERF 288 >UniRef50_UPI0001AF0A70 hypothetical protein AbauAB_10367 n=1 Tax=Acinetobacter baumannii AB900 RepID=UPI0001AF0A70 Length = 179 Score = 112 bits (281), Expect = 5e-24, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 18/186 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ VD ETTGL+ + +E+ L+ D + ++ DPKA ++G Sbjct: 1 MIPYILGVDTETTGLEVENGDKIIEIALIKYDLDGAKLEEFVQRIDPERNIDPKAQAVHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 L + + EV + + N AFD +A + M ++ Sbjct: 61 ISYSDL----IGCPKFVDIAEEVASIVNHASLLVAHNFAFDGPFIATELKRAGMTPKKVS 116 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCF 176 G+ + L + LGV H+A D CF Sbjct: 117 SF----------CTMEYGRWATFDGKYPKLADLCFSLGVEYDASAAHAASYDVDVMMQCF 166 Query: 177 DMLRHT 182 R Sbjct: 167 FKARER 172 >UniRef50_A3QFI6 Exonuclease, RNase T and DNA polymerase III n=5 Tax=Shewanella RepID=A3QFI6_SHELP Length = 226 Score = 112 bits (281), Expect = 5e-24, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 8/179 (4%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +L+ +DLE TGL+ + +G++ + G+ + + Q+ + ++ I+G Sbjct: 40 EAELLAIDLEMTGLNASFDQILSIGVVPIRQGQLILSEAQHKLVQIEGSVGQSATIHGIL 99 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L A G + D + L Sbjct: 100 DTHLDAALTP----EQAMAWFLSVSEGMVLVAHHAPLDLAFLQSGLQACLGEKPRLLAID 155 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + L R G+PV H+A+ DA A Sbjct: 156 TLLLEKQRL----LRQQEHLQEGCLRLGRSRARYGLPVYAAHNALIDALACGELLLAQV 210 >UniRef50_Q9ZX22 Gp57 n=2 Tax=unclassified Siphoviridae RepID=Q9ZX22_BPMT4 Length = 177 Score = 112 bits (281), Expect = 5e-24, Method: Composition-based stats. Identities = 101/187 (54%), Positives = 126/187 (67%), Gaps = 10/187 (5%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +QL+VVD ETTGL +D A +EV +N+DTG L+FVP +T EQLA A P AM++N Y Sbjct: 1 MTRQLVVVDCETTGL-HDGAAILEVAAVNIDTGAELHFVPFVTREQLAQAQPMAMQMNRY 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 YERG+++ L+ T A+ ++ + L GNTF GSNPAFDS ++A Sbjct: 60 YERGIWQRRLSPDSTDAAYWKLANMLAGNTFGGSNPAFDSRLLAAAM---------PDGA 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 WHHRLADLAA+ AGKLN+DP EL GLDAV ERLGV V +RHSA+ DA ATA CF +LR Sbjct: 111 PEWHHRLADLAAFTAGKLNLDPVELPGLDAVCERLGVTVSDRHSALADAHATATCFTILR 170 Query: 181 HTAAAHL 187 AA L Sbjct: 171 EIPAAAL 177 >UniRef50_C2G0Y5 DNA polymerase III, epsilon subunit n=8 Tax=Bacteroidetes RepID=C2G0Y5_9SPHI Length = 203 Score = 112 bits (281), Expect = 5e-24, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 17/177 (9%) Query: 3 KQLIVVDLE-TTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E T VG++ VD G + + ++G Sbjct: 4 QSFIAIDFELAT---AAYNSVCSVGIVRVDQGVITDEFYSLVKPPKNEYMWQTTRVHGIK 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++D L+ N FD ++++ + + L + Sbjct: 61 PKDTADA----PTFEEIYPKIKDLLQNKKMVAHNEKFDREVLSKTMKACGLDYRELHLPV 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 +W + + L+ E +G+ + N H A+ DA A AF + Sbjct: 117 MWE------CTSKIYRD--KGFKKTKLNLCCEIMGIDL-NHHEALSDAKAAAFLYLK 164 >UniRef50_A1S5S6 DNA polymerase III epsilon subunit-related 3'-5' exonuclease-like protein n=6 Tax=Shewanella RepID=A1S5S6_SHEAM Length = 228 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 14/174 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + ++ +DLE TGLD + +G++ +D G + ++ + ++ I+G Sbjct: 40 SAPMLALDLEMTGLDPGRDQILAIGVVPIDGGIIQLQGAESVLVEIQGSVGQSAVIHGIT 99 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT---YSMPFSPLT 118 +R L+ A A + + G + D + SMP + Sbjct: 100 DRELHNAL----PLADAMNWLMQKMNGRILVAHHAPLDLAFIRANMSRSLGISMPMLAID 155 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + RL + L A +R G+PV + H+A+ DA + Sbjct: 156 TLALERQRLLRIHDAI-------QEGSLRLGASRQRYGLPVYDAHNALTDALSC 202 >UniRef50_B1YF69 Exonuclease RNase T and DNA polymerase III n=2 Tax=Exiguobacterium RepID=B1YF69_EXIS2 Length = 190 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 14/177 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ET + ++ G + G + + + D + ++G + Sbjct: 6 LAIDFET--ANRNSRSICAFGWSVLSEGRVVTSEQ-VLINPEEDFDAGNIRVHGIRPSDV 62 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + A G + + N AFD + + Y + Sbjct: 63 WDA-PALPEAMEAHGLFKLIEKAELVIAHNAAFDMGALQKAVQKYDL---------YQMP 112 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L+ +AE L V H A DA A + Sbjct: 113 TFQYGCTVKLSRKLYPWLPNHKLNTMAEFLNVSFK-HHDAKEDAYICALLLQDMFDR 168 >UniRef50_B2WGV1 RNA exonuclease 4 n=2 Tax=Pleosporineae RepID=B2WGV1_PYRTR Length = 358 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 25/193 (12%) Query: 1 MAKQLIVVDLETTGLDYDTAL---PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 + + + +D E G+ + V L+N + ++ V + + Sbjct: 147 LPGKYVALDCEMVGIGPEPNRDSALARVSLVNFHGHQIYD--SYVQVPRQVQVTDYRTAV 204 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G R L ++ + +++ L G G D ++ Sbjct: 205 SGIEPRHLRKDV--ARPFDEVRNDIKILLTGRILVGHAVKNDLDVL-------------- 248 Query: 118 TVGRVWHHRLADLAAYAAGKLNID-PTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAF 174 + + + D + ++ + P GL +AE+ LGV + HS++ DA AT Sbjct: 249 -ILKHDKRFIRDTSKFSKFRALATIPGRTPGLKLLAEKLLGVEIQVGAHSSVEDARATMA 307 Query: 175 CFDMLRHTAAAHL 187 F + + + Sbjct: 308 LFRLEKDDFEKEI 320 >UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus capsulatus RepID=Q605A2_METCA Length = 478 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 52/198 (26%), Gaps = 13/198 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY---FVPHITVEQLAAADPKAMEIN 58 A DLET G D + L D + V + P A + Sbjct: 4 APSFYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVT 63 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSPL 117 G + + E + + FD ++ P++ Sbjct: 64 GITPQYAAELGVPESAFIATIHRIFMRPGTCVLGYNTLRFDDEMLRHAFYRNLYDPYARE 123 Query: 118 TVGRVWHHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSAIGDA 169 G + DLA + + L+ +A G+ + H A+ D Sbjct: 124 WKGGNSRWDVIDLARLTQALRPDGIEWPRDSLGSPVFKLERLAAANGIRHESAHDALSDV 183 Query: 170 AATAFCFDMLRHTAAAHL 187 AT F L L Sbjct: 184 RATVA-FARLIAERQPRL 200 >UniRef50_Q30Q47 Exonuclease n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30Q47_SULDN Length = 266 Score = 112 bits (280), Expect = 7e-24, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 52/179 (29%), Gaps = 19/179 (10%) Query: 1 MAK-QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M++ +VD+ET G + +E+ L V G + ++ + +P EI G Sbjct: 66 MSESTFCIVDIETNGSKIEKHQIIEIAALKVKNGLVVER--FESLVECHEINPHITEITG 123 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E + + + +L F + FD ++ +P Sbjct: 124 IST----NETIDAPNLKKVMYDFRTFLGDAVFIAHDVKFDYKFISLSMQKIGLPPLLNRS 179 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFD 177 + +Y L + + H A+ D T F Sbjct: 180 LCSLSLAERTIESY-----------RYALSYLNTIFNLHPEATHHRAMSDVITTYELFK 227 >UniRef50_A4C923 Putative DNA polymerase, exonuclease activity n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C923_9GAMM Length = 210 Score = 112 bits (280), Expect = 7e-24, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 56/187 (29%), Gaps = 16/187 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+DLE TGLD V + L ++ + + ++ +G Sbjct: 27 KYLVIDLELTGLDPKVDEIVSLAWLPIEEQRIIVGRSEHFINCEVNELKQSPIFHGIDRF 86 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A E+Q L + N D + ++ + Sbjct: 87 AVKGGV----PLRQALLELQPLLDDHVLVFHNAELDWAFLKAAFQNANL--------LLS 134 Query: 124 HHRLADLAAYAAGKLNIDPTE----LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + D +L E L R +P H+A+ DA ATA F Sbjct: 135 SSVMLDTMKIEYKRLMNQGHEIASDDLNLARCRSRYQLPEYLTHNALTDALATAELFLAQ 194 Query: 180 RHTAAAH 186 + A Sbjct: 195 LNQIAGA 201 >UniRef50_Q4WHF8 RNA exonuclease 4 n=47 Tax=Fungi/Metazoa group RepID=REXO4_ASPFU Length = 310 Score = 112 bits (280), Expect = 7e-24, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 52/180 (28%), Gaps = 29/180 (16%) Query: 4 QLIVVDLETTGLDYDTA---LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +D E G+ + V ++N + + V ++G Sbjct: 115 KYVAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDS----YVRPKEMITDWRTHVSGI 170 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + +V + L G G + D + + Sbjct: 171 SPKHMAEAR----SLEQVQKDVAEILDGRILVGHAVSNDLDAL---------------LL 211 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPV-VNRHSAIGDAAATAFCFDM 178 + D + + + L +A E LG+ + HS++ DA AT + Sbjct: 212 GHPKRDIRDTSKHPPYRKIAGG-GSPRLKILASEFLGLNIQDGAHSSVEDAKATMLLYRR 270 >UniRef50_Q4UJH2 DNA polymerase III, epsilon subunit-like protein n=5 Tax=spotted fever group RepID=Q4UJH2_RICFE Length = 377 Score = 112 bits (280), Expect = 7e-24, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 26/176 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV---DTGES--LYFVPHITVEQLAAADPKAMEINGY 60 I +D ETTGL ++ +E+G++ + G + + + + E+ G Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQIVDELNQYQDPQQPIPLRITELTGI 185 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + +A+ A + + + N +FD + + P Sbjct: 186 TDEMVQGKAID----QEAVTQFLENVD--IIIAHNASFDRPFFDKMFLHL-----PPKAW 234 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + E L+ +A + H A+ D A Sbjct: 235 GCSRADID---------WKAEKIESHKLEYLAYKYNF-FYEGHRAVTDCLAGLHLL 280 >UniRef50_C9S192 Exonuclease RNase T and DNA polymerase III n=6 Tax=Geobacillus RepID=C9S192_GEOSY Length = 242 Score = 112 bits (280), Expect = 7e-24, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 50/184 (27%), Gaps = 18/184 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++D+ETTG + + + G + V+ + G Sbjct: 61 PFVIIDMETTGFSPEQGDEILAMAAAKTVGG-VVTDAYMTLVKPEKPIPEHISALTGIEA 119 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + A A ++ G + D + + + Sbjct: 120 KDV----VFAPPLAEALRTFVPFIAAGVLIGYHIGHDLAFLRHALWRH--------YRQK 167 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 W R DL + D G+ RH+A GD A A + +L Sbjct: 168 WSGRFVDLQPMM----TLIGHSCPTFDDALACYGIRCPRRHTADGDVEAMAKLWAILLDE 223 Query: 183 AAAH 186 Sbjct: 224 FRQR 227 >UniRef50_Q7NC15 PolC n=1 Tax=Mycoplasma gallisepticum RepID=Q7NC15_MYCGA Length = 1501 Score = 112 bits (280), Expect = 8e-24, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 28/189 (14%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI---------TVEQLAAADPKAM 55 ++ D+ETTGL+ +E+ + V ++ ++ Sbjct: 417 FVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEFVQIGKFEKLIKNKKPLSKFTT 476 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDW-LRGNTFAGSN-PAFDSTIVARQRVTYSMP 113 ++ G + L Q E ++ + + N FD + + Y + Sbjct: 477 QLTGLKDSDLKDA----QDEKTVLEEFVNFIQKDDVLVAHNGIDFDFIWINTKLDKYKLK 532 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAA 171 + L + + L+ ++ +LG H A D Sbjct: 533 PLDNPM----------LDSLRLAYQLY-QFKRYTLENLSLKLGYEYDKTLAHRANYDTEL 581 Query: 172 TAFCFDMLR 180 A C ++ Sbjct: 582 LAKCLMIML 590 >UniRef50_D1VY91 UvrD/REP helicase n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1VY91_9BACT Length = 905 Score = 112 bits (280), Expect = 8e-24, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 54/189 (28%), Gaps = 15/189 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGYY 61 + ++V D ETTGL+ V++ + + G + + ++ Sbjct: 520 EDIVVFDTETTGLNVFEDDIVQIAAVRMRQGCVVPGSEFVVFMRTNREIP---RKLGNID 576 Query: 62 E---RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + L +++ + G N +D I+ Y + Sbjct: 577 NPLIEEIQHHQLYSPS--EGLKMFLEYVGNSRLLGHNADYDYHILNFNLQRY---LPDIQ 631 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + +L + L + L + N H A D AT Sbjct: 632 LEERCNMYFD---SLKLIRLLEPNLKEYKLKYLLSVLHLEGQNSHLADADVHATCSVVRH 688 Query: 179 LRHTAAAHL 187 A H+ Sbjct: 689 CYEKAKLHI 697 >UniRef50_Q6MC14 Putative DNA polymerase III, epsilon chain, mutD n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MC14_PARUW Length = 216 Score = 112 bits (280), Expect = 8e-24, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 37/165 (22%), Gaps = 19/165 (11%) Query: 22 PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGE 81 +E+ + V P++ I+ + + A E Sbjct: 1 MIEIAAYDPVQNRRFEK----FVHPGFPIPPESTAIHHITDEMVANAG----SFADVGAE 52 Query: 82 VQDWL-RGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLN 139 ++ N FD + + + L + + Sbjct: 53 FVEFCAGEVVLIAHNNDNFDLHFLRHEFERNQLILPTHWKF---------LDSLKWARRY 103 Query: 140 IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + E G+ N H A+ D F + Sbjct: 104 RSDLPRHTLQFLREIYGITANNAHRALDDVIVLERVFRSMVDDLE 148 >UniRef50_A3WQA1 3'-5' exonuclease n=1 Tax=Idiomarina baltica OS145 RepID=A3WQA1_9GAMM Length = 217 Score = 111 bits (279), Expect = 9e-24, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 11/181 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI---TVEQLAAADPKAMEI 57 I +D+ETTGLD + + + + L V+ ++ I Sbjct: 25 QEHTYIAIDIETTGLDPINDQILSIAWVPIKPPMILIGEAQYHEFCVDPDVDL-QQSPTI 83 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + L +++D L G + + D + + R+T ++ F PL Sbjct: 84 HGLTKAQLSSGG----DVKKVLKDLEDKLYGCVMVCHHRSLDWSYLRDNRLTENLHFEPL 139 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 V ++ +L L A R G+P+ H A+ DA A A F Sbjct: 140 GVFDTLSFEKNKMSFDNEFQL---HNSSLTLAACRTRHGLPIYTSHHAMDDAIACAELFL 196 Query: 178 M 178 Sbjct: 197 A 197 >UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammaproteobacteria RepID=Q21I25_SACD2 Length = 485 Score = 111 bits (279), Expect = 9e-24, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 52/198 (26%), Gaps = 12/198 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEI 57 M K D ET G + P + + D ++ + + +P+A + Sbjct: 1 MQKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLV 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSP 116 G + + +TE++ ++ FD + P+ Sbjct: 61 TGLTPQETLAKGVTEREFIKQIHRELAKPGTCGVGYNSIRFDDEVTRYTLYRNYFDPYER 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNID-------PTELEGLDAVAERLGVPVVNRHSAIGDA 169 + D+ L+ + + G+ + H A D Sbjct: 121 EWRNGNSRWDIIDMVRLCYALRPEGIEWPVVDGKPSFRLENLTKVNGIVHASAHDAYSDV 180 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 181 EATIKL-ARLVREKQPAL 197 >UniRef50_A3HVK4 DNA polymerase III, epsilon subunit n=1 Tax=Algoriphagus sp. PR1 RepID=A3HVK4_9SPHI Length = 223 Score = 111 bits (279), Expect = 9e-24, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 9/166 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING-YYER 63 +V+D ETTGL+ + G + ++ + + D K + ++G Sbjct: 39 FVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWYLKSSKKDFKTIPVHGLIGNE 98 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 V ++ N G + FD ++ + + + Sbjct: 99 E-------AVPLEQFAKRVLEYFENNILVGHHLGFDLEMLEKALKPFGLDKIQNKCIDTM 151 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 + L N + LD++ +R + +RH+A GDA Sbjct: 152 SLAIR-LDHGLMADRNYIDFKDYSLDSLCQRYDIKTDDRHTAGGDA 196 >UniRef50_Q1QDN3 Exonuclease n=3 Tax=Psychrobacter RepID=Q1QDN3_PSYCK Length = 203 Score = 111 bits (279), Expect = 9e-24, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 60/180 (33%), Gaps = 15/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYER 63 + +D E TGL+ + V ++++ + H+ + + I+G Sbjct: 35 WVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVMPEGDTIVIHGLRTA 94 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA---RQRVTYSMPFSPLTVG 120 + G + ++ G P D + + + +P + + Sbjct: 95 DVEHAM----SYDEMLGLLLPFISNRPLVGFCPQIDVGFLNPLVKHYMGTHLPNEIIDIR 150 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ R+ + + + L+++ +P + H A DA TA F +R Sbjct: 151 PLYSRRMMGRSQGLSSQAQH-------LNSILAHYNIPELGTHDAYNDAIMTAMAFLHMR 203 >UniRef50_B6BKX7 Exonuclease n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BKX7_9PROT Length = 272 Score = 111 bits (279), Expect = 9e-24, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 52/175 (29%), Gaps = 18/175 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VD+ET G D +E+G + V G + ++ + EI G Sbjct: 68 EFCIVDIETNGSKIDKHQIIEIGAVKVRDGVIIDK--FESLVYCREINKHITEITGISVE 125 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 E + +L F + FD ++ + Sbjct: 126 DTKNA----PNLKKVLYEFKSFLGNAIFVAHDVKFDYKFISLSMQKIGLEPLLN------ 175 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFD 177 + + A + I + L + + L + P H A+ D T F Sbjct: 176 ----RSICSLALAERTI-ESYRYALSYLNDSLHLNPNATHHRAMSDVITTYGLFM 225 >UniRef50_C1GVI3 RNA exonuclease n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1GVI3_PARBA Length = 349 Score = 111 bits (279), Expect = 9e-24, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 52/180 (28%), Gaps = 29/180 (16%) Query: 4 QLIVVDLETTGLDYDTAL---PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +D E G+ + V ++N + + V ++G Sbjct: 147 KYVAIDCEMVGVGPNPDRDSALGRVSIVNYNGEQVYDS----FVRPKETVTDWRTHVSGV 202 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + +V L G G D + + Sbjct: 203 SPKHMAEAR----ELEEVQKDVAKILDGCILIGHAIRNDLKAL---------------LL 243 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVVN-RHSAIGDAAATAFCFDM 178 + + D + + + L +A E LG+ + HS+I DA AT F Sbjct: 244 SHPNRDIRDTSKHPPYRKLAGG-GSPRLKILASELLGLDIQGAAHSSIEDARATMLLFRR 302 >UniRef50_Q0CHU1 RNA exonuclease 4 n=5 Tax=Eukaryota RepID=Q0CHU1_ASPTN Length = 510 Score = 111 bits (279), Expect = 9e-24, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 51/180 (28%), Gaps = 29/180 (16%) Query: 4 QLIVVDLETTGLDYDTAL---PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +D E G+ + V ++N + + V ++G Sbjct: 118 KYVAMDCEMVGVGPNPDHDSALARVSIVNFNGEQVYDS----FVRPKEMVTDWRTHVSGI 173 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R + EV + + G G D + + Sbjct: 174 LPRHMAEAR----TLEQVQKEVAEIIDGRILVGHALRNDLDAL---------------LL 214 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVV-NRHSAIGDAAATAFCFDM 178 + D + Y + L +A E LG+ + HS++ DA AT + Sbjct: 215 SHPKRDIRDTSKYPPYRKVAGG-GSPRLKVLASEFLGLDIQGGAHSSVEDAKATMLLYRR 273 >UniRef50_C0QMS3 Predicted type III DNA polymerase PolC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QMS3_DESAH Length = 290 Score = 111 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D+ET + D A ++G+ + G+ L V DP + ++G E Sbjct: 2 EFVSIDVET--ANPDMASICQIGIACFNNGQ-LEREWSSLVNPRDYFDPINVSVHGINET 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + E++ L G FD + + +S+ + Sbjct: 59 SV----SSAPSFEEIYHEIRSLLSGKICVSH-THFDRISMDKAIRKHSLDPIDV------ 107 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D A A + GL V + +G H A+ DA A A Sbjct: 108 --VWLDSARIARRAWEECAWKGYGLANVCKIIGFEFK-HHDALEDAKACGAIVHAAVEKA 164 Query: 184 AAHL 187 L Sbjct: 165 GLTL 168 >UniRef50_A3EQH5 DNA polymerase III, epsilon subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3EQH5_9BACT Length = 265 Score = 111 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGL-DYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +D+ETTGL A +E+G + + G+ L ++ +ING Sbjct: 2 KVTFLDVETTGLLRDSRARIIELGFSSWENGK-LLRKTSTLIKGADIVPDNISKINGITT 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + W ++ ++G+ N AFD +V R+ + Sbjct: 61 EMLKDA----PRFEEVWKSIKGDIQGSLLVAHNLAFDVGMVNRELILADRIPLGNMG--- 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + L +A+ +G+ N H A+GD L + Sbjct: 114 -------IDTLPLSRKMLPELSSYRLGEIAKHMGILNENPHRAMGDLETLEKIVSNLLGS 166 Query: 183 AAAHL 187 Sbjct: 167 LPGTF 171 >UniRef50_A8L7F0 Exonuclease RNase T and DNA polymerase III n=1 Tax=Frankia sp. EAN1pec RepID=A8L7F0_FRASN Length = 237 Score = 111 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 61/183 (33%), Gaps = 9/183 (4%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + V+D ETTG D +T V+V LL V + ++ A I+G Sbjct: 6 RPMAVLDFETTGTDVETDRAVQVALLKV-GPTGVLNQLCQIIDPGVDVPEAAARIHGITT 64 Query: 63 RGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 RE + G+ + W G N +FD T++ R+ + Sbjct: 65 ERARREGRDPAEVLGRVGQALEGVWRDGIPVVIMNSSFDLTLLDRELRRHHGRSLAEADM 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V + D +L+ L A+A V H A+ D TA L Sbjct: 125 LVLDPMVID------RELDPRRPGKRTLTALATHYRVRQEGAHDALADCLTTARIAWRLP 178 Query: 181 HTA 183 Sbjct: 179 RMH 181 >UniRef50_D2MNZ8 Exonuclease n=1 Tax=Bulleidia extructa W1219 RepID=D2MNZ8_9FIRM Length = 186 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 22/187 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL---AAADPKAMEI 57 M +++ VD+ET D +GL ++ G L + ++ + ++ Sbjct: 1 MT-RVVAVDVET--ASSDHRSMCAIGLSVLENG-VLEEAFYSLIKPAANANHFEYFNTKV 56 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + + + ++ L N FD +++ + P + Sbjct: 57 HGIHPKDVQDA----PTLPEVYPTIKSLLESGIVVAHNAVFDVSVIKNCCLNTGCPVPKV 112 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 T + + LD VA L +P+ H A DA A Sbjct: 113 TYF----------DSVPLSRRAFPLLVNHKLDTVARYLKIPLD-HHHAGSDAYACLAIVA 161 Query: 178 MLRHTAA 184 Sbjct: 162 AAMAKYE 168 >UniRef50_Q2BJ82 DNA polymerase III subunit epsilon n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ82_9GAMM Length = 209 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 73/182 (40%), Gaps = 16/182 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 +++ +D ETT LD V +G + + + L I ++ + +++I+ Sbjct: 31 DEVVSLDCETTSLDVKQGEIVSIGAVKIKGRKVLSSDRLDIKLKPPKSLTGDSIKIHKIR 90 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLT 118 E L A +V +++ G +D ++ + + +P + Sbjct: 91 ESDLAGGI----DIEDALEQVLEFVGNRPILGYYVNYDIRMLDKFIRPQFGFGLPNKAIE 146 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + V+H + ++ D ++++L +P++ RH+AIGDA A + Sbjct: 147 LSHVYHDIIKW--------KSVGGNVDLRFDTISKQLDIPMLERHTAIGDALTVALMYVR 198 Query: 179 LR 180 L+ Sbjct: 199 LK 200 >UniRef50_C5NYM3 ATP-dependent helicase DinG homolog n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYM3_9BACL Length = 616 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 19/183 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K VVD+E T D ++ +D + ++ E+ G Sbjct: 1 MNKLFCVVDIELT----DDKEIIQFSATKLDENFREILSINYYIQPKKQVSTFVTELTGI 56 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L+ + E+ ++++G+ D I+ ++ + + Sbjct: 57 SNEMLHDK----PFFEDVAHELYNYIKGDILVCHGLPSDYVILKKRFHDVGILYKAK--- 109 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDML 179 L +L + L ++ LG+ H+A D T + Sbjct: 110 -------LSLDTVELSRLFLPSQTSYRLSDLSNSLGLYTGDQYHNAAIDVKVTVKLLKEI 162 Query: 180 RHT 182 Sbjct: 163 ARK 165 >UniRef50_B5ETC4 DNA polymerase III, epsilon chain n=2 Tax=Vibrio fischeri RepID=B5ETC4_VIBFM Length = 259 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 58/189 (30%), Gaps = 21/189 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPK---------A 54 VVD ET+GL+ T V +G +++ G L H + + + + + A Sbjct: 66 FTVVDFETSGLNPKTDHIVSIGWVHIINGVIKLNSAQHHIINEPISINAEDEGEERDHTA 125 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 ++ + A L N + + + ++ +P Sbjct: 126 RSLHHILPE----QQKMGISLEKAMECFFSNLPSNILVVHGATIEQRFLEQFFLSLQLPN 181 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 P+ + + L ++ + +P H A+ DA +TA Sbjct: 182 LPMIWLDTLRIEQNTIQQNRYQR-------DFRLFSLRRQYKLPDYPAHHALVDAISTAE 234 Query: 175 CFDMLRHTA 183 F + Sbjct: 235 LFLAQKKRL 243 >UniRef50_UPI000194CE9E PREDICTED: hypothetical protein n=1 Tax=Taeniopygia guttata RepID=UPI000194CE9E Length = 348 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 42/191 (21%), Gaps = 29/191 (15%) Query: 4 QLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G + ++N + + +G Sbjct: 143 KYVAIDCEMVGTGPQGKVSELARCSVVNYEGDVIYDK----YIRPELPIVDYRTRWSGIT 198 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + A E+ L+ G D + Sbjct: 199 KQHMKNAI----PFKAAQAEILKILKDKIVVGHAIHNDFQALKYFH-------PKDRTRD 247 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVN-RHSAIGDAAATAFCFD 177 + + L +A L + V HS++ DA + Sbjct: 248 TSQSPAL------KKRAGLPIRTNVSLKNLARHLLHKNIQVGRKGHSSVEDAQTAMELY- 300 Query: 178 MLRH-TAAAHL 187 L L Sbjct: 301 RLVEVQWEKEL 311 >UniRef50_B9YE07 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YE07_9FIRM Length = 187 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 21/176 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAAD---PKAMEINGY 60 + +D ET + VGL D GE + F + D P ++I+G Sbjct: 2 KWAAIDFET--ANPSPMSACAVGLTVFDEGEMV-FSDSWLIRPHPYYDAFYPSFIDIHGI 58 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + +++ WL G N FD ++A Y + Sbjct: 59 TPDQVADA----PFFPKVYEQLKPWLDGGVLCAHNAGFDMKVLASCCSLYRLELPDAPYF 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + L+ V + +G+ + H A DA A Sbjct: 115 ----------CTVKLSRKVYPYLKHHRLNDVCDYMGIQLD-HHDAGSDARGCALIV 159 >UniRef50_B4WXR6 Exonuclease superfamily n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXR6_9GAMM Length = 215 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 63/178 (35%), Gaps = 10/178 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 ++ +D ETTGLD TA V + + + G L + + + + I+ Sbjct: 45 VVAIDCETTGLDSRTAELVSIAAVVIKDGRVLSSQGLDVKLMPPDSLKEDTIRIHRLRPV 104 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + + G AFD ++ R P + + Sbjct: 105 DLEGG----ESVRDALDALLALVGNRPLVGWCVAFDVAMINRYLRPLMGFDLPNDIIELS 160 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L D T DA+A L VPV+ RH+A GDA +A + L+ Sbjct: 161 A-----LYQKKMRYWQPDVTPDLRFDAMASALQVPVMERHTARGDAVTSALMYLQLQK 213 >UniRef50_C1XFI0 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XFI0_MEIRU Length = 200 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 62/186 (33%), Gaps = 15/186 (8%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESL---YFVPHITVEQLAAADPKAMEINGYYER 63 +DLET+GL+ + + VG++ + G ++ + + A + ++ + Sbjct: 18 ALDLETSGLEP-SDQILSVGMVPIRGGVIEFGAHYYSLVRPVRPQALSVEGIQAHHILPS 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL---TVG 120 L A E++ + + + D + + + T P+ Sbjct: 77 ELEAA----PPLAQVLDEMEQRIGQDVLILHFSSIDLSFLRQSYKTLGRPWPKPLVVDTA 132 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L A G+P H A+ DA ATA F +LR Sbjct: 133 VLLARLNERKRWLEPHSQPYPGA----LGAARATFGLPGHLEHHALWDALATAELFLVLR 188 Query: 181 HTAAAH 186 H AH Sbjct: 189 HRLQAH 194 >UniRef50_B0G161 DNA polymerase III, epsilon subunit n=1 Tax=Dictyostelium discoideum RepID=B0G161_DICDI Length = 483 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 18/180 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++I DLET+G+ + +E+G + + G + + A P + +I+ Sbjct: 300 RVICFDLETSGVT-SSDTIIEIGAVELIDGCRTGVIFQSYAQPKAQIHPVSEQIHQLTSL 358 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ + DW+ + N AFD I+ ++ + Y++PF+ Sbjct: 359 QL----MSAPPIEIILASFMDWVGNSPLVAHNLAFDKRILIQELIRYNIPFNIDH----- 409 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP---VVNRHSAIGDAAATAFCFDMLR 180 K + LD+++++L + + H A+ D+ A + L Sbjct: 410 ----ICFCTMKYFKKIYNGL-NYSLDSISQKLKINKLLLRKTHGALIDSEILAIIYTHLL 464 >UniRef50_Q682U6 Putative uncharacterized protein At5g26940 n=3 Tax=Arabidopsis thaliana RepID=Q682U6_ARATH Length = 316 Score = 111 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 53/190 (27%), Gaps = 28/190 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +IV DLETTGL +E+ ++ G Y V I+G Sbjct: 110 TVIVSDLETTGLHRKNERIIEIAAQDIAGGG--YSTFQTLVNPGV-VPITNAHIHGIRND 166 Query: 64 GLYREALTEQQTAVAWGEVQDWL-------RGNTFAGSNP-AFDSTIVARQRVTYSMPFS 115 + + ++ N +FD + + S Sbjct: 167 MV--CRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIP 224 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTE-----LEGLDAVAERLGVPVVN-RHSAIGDA 169 H L + + N+ E L+A+A+ + H A+ D Sbjct: 225 ---------HNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDV 275 Query: 170 AATAFCFDML 179 + F L Sbjct: 276 LLLSKVFQKL 285 >UniRef50_Q2RWQ8 Exonuclease n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RWQ8_RHORT Length = 209 Score = 111 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 13/186 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHIT-VEQLAAADPKAMEINGYYE 62 +++ VD ETTGLD + + + V L V+ A+ I+ E Sbjct: 30 EVVSVDCETTGLDRHNDDIITLAAVRVRGNRVLTSQKLDLVVKPSRPIRRDAVCIHHLRE 89 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 + + R A + G FD ++ R + +P + V Sbjct: 90 QDVERGLAP----REAVARFLRFAGSRPLIGYYLEFDVALIDRLVRPWLGIGLPNPRIEV 145 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +++ + T + E L +P ++ H A DA T+ + L Sbjct: 146 SEMFYDW-----RTRGREELYTGTVDLRFATILEALDIPPLHNHDAFEDAVMTSLAYLKL 200 Query: 180 RHTAAA 185 R A Sbjct: 201 RARAGR 206 >UniRef50_C1E3S8 Exonuclease (Fragment) n=1 Tax=Micromonas sp. RCC299 RepID=C1E3S8_9CHLO Length = 279 Score = 111 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 53/190 (27%), Gaps = 19/190 (10%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +I +D E G+ D V ++N D L V ++G Sbjct: 32 DIIAMDCEMVGVGEDGRRSILARVSVVNEDGNVVLD----TFVAPTEPVTDYRTRVSGVR 87 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L ++ D L+G T G D ++ P Sbjct: 88 PQDLRGA----PPFKEIQRKMADILKGRTLVGHALKNDLRVL-----LLDHPRRQTRDTA 138 Query: 122 VWHHRLADLAAYAAGKLNI--DPTELEGLDAVA-ERLGVPVVNR-HSAIGDAAATAFCFD 177 ++ L A + L + + LG+ + HS++ DA A + Sbjct: 139 LYRPLTRPLRANERAQDTGIARGRGSRSLKELCAQHLGLEIQGGEHSSVDDARAALLLYQ 198 Query: 178 MLRHTAAAHL 187 + Sbjct: 199 KNQRNWEREF 208 >UniRef50_C2UN60 Exonuclease n=4 Tax=Bacillus cereus group RepID=C2UN60_BACCE Length = 288 Score = 111 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 24/177 (13%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGL +E+ ++++ G+ L V+ +A I+G Sbjct: 131 FVILDTETTGLT-LRDQIIEISVIDL-AGKILLNS---LVKPTIIIPAEATSIHGITNEM 185 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 ++ Q + E+ + G T N FD ++ + ++ F Sbjct: 186 IHGA----QSWTTIYQELLEVTVGKTILIYNAEFDLGMIENTCIANNVEF---------- 231 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 +D + L + L + H A D A L++ Sbjct: 232 KDFKSTCVMKMYADYVDSKKWISLSDATK-LTIK----HRAAADCFAVLELLQQLKN 283 >UniRef50_Q89MS5 Blr4117 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89MS5_BRAJA Length = 223 Score = 111 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 11/182 (6%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYY 61 + +V+D ETTGL+ T V + + + L V + + +A++I+ Sbjct: 30 DEFVVIDCETTGLNVRTDNVVAIAAIKIRGNRILTSARFEAIVHPDSELEAEAIKIHRLR 89 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ-RVTYSMPFSPLTVG 120 + ++ G FD ++ + + + Sbjct: 90 RSDVEA----SPIVWKVLPGFLHFIGPRPLIGYYVDFDIAMLDKYILPLVGIELPNERIE 145 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + G + A+ L +P + +H A DA TA F LR Sbjct: 146 VSRLYYER-----KYGNAPPNTEVDLSFAAILHDLCIPPLGQHDAFNDALMTAMMFLQLR 200 Query: 181 HT 182 Sbjct: 201 DL 202 >UniRef50_Q08237 RNA exonuclease 4 n=12 Tax=Saccharomycetaceae RepID=REXO4_YEAST Length = 289 Score = 111 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 48/179 (26%), Gaps = 27/179 (15%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E G+ + + ++N L V+ ++G Sbjct: 120 KYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDE----FVKPREKVVEWRTWVSGIK 175 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A + D L G G D + Sbjct: 176 PEHMKNAI----TFKEAQKKTADILEGRILVGHALKHDLEALM---------------LS 216 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPV-VNRHSAIGDAAATAFCFDM 178 L D + + + + L + E L + + HS++ DA AT + Sbjct: 217 HPKSLLRDTSRHLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLLYKK 275 >UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z9I3_9GAMM Length = 483 Score = 111 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 51/198 (25%), Gaps = 13/198 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEIN 58 ++ D ET+G + P++ + D ++ + P A+ + Sbjct: 4 SESFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAIRVT 63 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G E E ++ FD I P Sbjct: 64 GISPYKALAEGANEGAFMAKIQREFMVPGTCALGYNSVRFDDEITRFALYRNFFPPYARE 123 Query: 119 VGRV-WHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 G+ L D+A D L+ + G+ N H A+ D Sbjct: 124 FGQNRSRWDLIDVARAIYALRPDGIVWPIREDGLPSFRLEDLTAANGIDHGNAHDALADV 183 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L A L Sbjct: 184 LATIAL-AKLLSKAQPTL 200 >UniRef50_D0I3G5 Putative exonuclease n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I3G5_VIBHO Length = 198 Score = 111 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 15/178 (8%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYR 67 +D ETTGL D A E ++ + + ++ +A I+G + Sbjct: 28 IDTETTGLGED-AEICEFAAIDGRGNVLI----NTLIKPSKPIPAEATAIHGITNDMVE- 81 Query: 68 EALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ-RVTYSMPFSPLTVGRVWHHR 126 T G + L A N +D ++ + +++ + + Sbjct: 82 ---TAPTWLEVEGMIAGLLVSRPVAIYNAEYDIRVIWQTSMISHGKDRAVPDELERSINA 138 Query: 127 LADLAAYAAGKLNI----DPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDML 179 + YA + L A A GV V N H A+ D T + Sbjct: 139 TCIMLEYAEYRGEWCDSRHQYRWHKLTAAAAHEGVTVEENAHRALADCRMTLGLIKAM 196 >UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSN1_AZOVD Length = 476 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 52/198 (26%), Gaps = 12/198 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF---VPHITVEQLAAADPKAMEI 57 M + D ETTG++ P++V + D + + P A + Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLV 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSP 116 G R L L E + T ++ FD I P++ Sbjct: 61 TGITPRLLAERGLCEAEFVTRLHAELALPGTCTAGYNSLRFDDEISRHALYRNFFDPYAR 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNID-------PTELEGLDAVAERLGVPVVNRHSAIGDA 169 L DL A L+ + G+ H A+ D Sbjct: 121 EWQAGNSRWDLIDLLRTAYALRPEGIHWPQEEGRVSLRLERLTAANGIEHGQAHDALADV 180 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 181 RATIAL-ARLLRERQPKL 197 >UniRef50_Q4IEV5 RNA exonuclease 4 n=6 Tax=Sordariomyceta RepID=REXO4_GIBZE Length = 319 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 28/179 (15%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E G+ V +++ + V+ ++G Sbjct: 132 KYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDS----YVKPKEKVTNWRTAVSGIS 187 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + + E+ LRG G + D + + Sbjct: 188 QKSMR----FARDFEEVQAEIDKLLRGRILVGHDLKHDLEAL---------------ILS 228 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNR-HSAIGDAAATAFCFDM 178 + D A ++ K L +A++ LGV + HS+I DA AT F Sbjct: 229 HPGKDIRDTAKFSGFKK-YANGRKPSLRVLAQQLLGVEIQGGEHSSIEDARATMLLFRK 286 >UniRef50_B1BYN4 Putative uncharacterized protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1BYN4_9FIRM Length = 261 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 16/180 (8%) Query: 1 MAKQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + +V+D ETTG++ Y V+V ++N D + + + P A ING Sbjct: 1 MKNKYVVLDFETTGVNRYHNDEVVQVAIVNQDD--EVLINELCKPKHHFSW-PSAQRING 57 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E N AF+ ++ Y + S Sbjct: 58 ISPLMVKDKLCFESYIDRIIEIF---DNSEFIVCYNIAFEQGMLKN----YGIDISKY-- 108 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 V+ + D A + + + L A+ G H A+ D AT +CF+ + Sbjct: 109 --VFKDPMKDFAYIYGERGYHGGYKWQSLSTCAKYFGYNFA-AHDALEDVKATRYCFEQI 165 >UniRef50_D0B757 DNA polymerase III n=38 Tax=Brucellaceae RepID=D0B757_BRUME Length = 224 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 18/185 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K++IV D ETTG+ + +G + ++ GE L ++ + + P+A ++G+ Sbjct: 14 KRVIVFDTETTGILPY-DRIITLGAVKIEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDN 72 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++ W + N FD + R+ + V Sbjct: 73 WM----TRYQDLFHELAAPIRKWFSWADEVVAHNAQFDMHYIQREFRKAEVDMLDQPVY- 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 + + LD ++G+ H A+ DA TA + + Sbjct: 128 ---------CTMDGARRLWRG-DSTKLDHCLAKIGLARTGHRHGALEDAYLTAGLYLHQQ 177 Query: 181 HTAAA 185 A Sbjct: 178 GVAKP 182 >UniRef50_Q04A97 DNA polymerase III, epsilon subunit related 3'-5' exonuclease n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q04A97_LACDB Length = 261 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 21/179 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V DLETTG +++G L V +++ V L + + G Sbjct: 7 DYTVFDLETTG-----KKIIQIGALKVRDDQTV-AKFSTYVNPLEKINDYVSHLTGISNY 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRV 122 + D++ +T G N +FD ++ Y + L + Sbjct: 61 QTDAA----PLIDEVMPDFLDFVGDDTLVGHNILSFDCNVL--ADNGYPVANPKLDTLLL 114 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + +Y L DP L + E G+ + N H AI D + LR Sbjct: 115 AN-------SYKKRGLFADPIPNVRLSTMKEYYGINI-NSHIAISDCITNNIVYQKLRD 165 >UniRef50_A1TI45 DNA-directed DNA polymerase n=4 Tax=Burkholderiales RepID=A1TI45_ACIAC Length = 221 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 49/166 (29%), Gaps = 18/166 (10%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ V+D ETTG+ A EV ++ ++ G + + A P +++ G Sbjct: 1 MPSRIAVIDFETTGMTPSQGARATEVAIVLMEEGRPVDR-FQSLMRTGAWLPPFIIQLTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L T E ++ N +FDS A + +P Sbjct: 60 ITPAMLD----TAPPAESVMREAARFVGDAPMVAHNASFDSRFWAAELARADLPAPHAFA 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHS 164 + L + LG+P H Sbjct: 116 -----------CTVLLSRRLYPEAASHQLGRIVAHLGLPPAARAHR 150 >UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae RepID=B5K7E4_9RHOB Length = 500 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 16/198 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYY 61 + DLETTGL P++ + D E + P+A+ + Sbjct: 2 DFVFYDLETTGLSPAFDQPLQFAAIYTDENFVEKDRVNIRCRLAPHILPSPQALVVTRVT 61 Query: 62 ERGLYR-EALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTV 119 L + + + E+ + + G N FD ++ + ++ + Sbjct: 62 PDQLTDPSLPSLFEFSQQVAELTERWAPAIWVGYNTIKFDEEVLRQTFYR-NLSPNVYAT 120 Query: 120 GRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGDA 169 + R L A A + LD +A G N H A+GD Sbjct: 121 QFNGNTRFDILPAVYAAYVREPDLLAWPKDDTGRRSFKLDRLAPANGFKAHNAHDALGDV 180 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L + L Sbjct: 181 EATIHI-ARLIAMRSPAL 197 >UniRef50_D2VB97 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VB97_NAEGR Length = 302 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 10/190 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++V+D+E T + +EV + G S+ + + EI + Sbjct: 80 NVVVLDIEGTSTNTSYCRMIEVACARIVDGTSISSFTSLVNADIDYIPEPVQEITKITKA 139 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT--FAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ ++L G N FD++++ + V Y + + + Sbjct: 140 MID----LSPPPQIVLSQLYNFLSSQPSLVVGHNVRFDASVIYNEFVRYKIINNEVHKPD 195 Query: 122 VWHHRLA---DLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFD 177 + L + L + E LG+ N H A D + T + Sbjct: 196 DFISHSLFTNTLCTLKLARRLFQGQPDYKLGNLVENLGLGRSINAHRAHADVSMTTLLWR 255 Query: 178 MLRHTAAAHL 187 + + L Sbjct: 256 RIYRESFERL 265 >UniRef50_A7SLH3 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SLH3_NEMVE Length = 275 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 20/218 (9%), Positives = 51/218 (23%), Gaps = 41/218 (18%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA---MEIN 58 V+D+ETTGL V++ + V + + + +++ Sbjct: 24 NATYCVLDVETTGLSKLNDRIVQIACVKVKPTG-DKESWMSYINPCMDREKQLAGGYKVH 82 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSM-PFSP 116 L ++ + + + + N +D ++ ++ Sbjct: 83 HLSPDMLLKK----PKFSEIVESLWRFLCGAEYLVAYNCLYDWDMLCQEFRRIDRTESGY 138 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP------------------ 158 + + + + + L+ VA+ L + Sbjct: 139 TKLEEEFVKKFTWIDVLRLSISSFPSLSNHKLETVAKHLKIEYMSRTTYTYKSSFNSGEV 198 Query: 159 -------------VVNRHSAIGDAAATAFCFDMLRHTA 183 H A+ D T Sbjct: 199 EAVSVTEQSCDPWQGGAHDAMCDVLTTNSVLQEAMGKL 236 >UniRef50_C5BKW5 Putative exonuclease n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BKW5_TERTT Length = 235 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 14/187 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVD E +GLD + + + +G + ++ + + + I+G + Sbjct: 40 ENRFLVVDCEMSGLDANRSQLLSIGWVVIENARITHASGKHLLIHADRGAGDSTRIHGLH 99 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + G+ + D + + Sbjct: 100 DATIAGAKSAAAA----ITLLAKQVPGSVLVFHHAPLDLRFLQQTAYEN--------FRC 147 Query: 122 VWHHRLADLAAYAAGKLNIDPTEL-EGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDML 179 D +L + E L ER G+ P+ H+A+ DA ATA Sbjct: 148 PLLFGYVDTMLIEQRRLQLQGAESGLRLAQCRERYGLPPISGHHNAMTDARATAELLLAQ 207 Query: 180 RHTAAAH 186 Sbjct: 208 TSYLGGA 214 >UniRef50_C5YG62 Putative uncharacterized protein Sb06g028980 n=1 Tax=Sorghum bicolor RepID=C5YG62_SORBI Length = 283 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 54/189 (28%), Gaps = 21/189 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +V DLETTG + VE L ++ G+ + A E+N Sbjct: 81 QPGTFLVFDLETTGFFHVDNRIVEFALRDLSGGK--DCTFQTLINPERDVPIYASELNNI 138 Query: 61 YERGLYREALTEQQTAVAWGEVQDWL-------RGNTFAGSNPA-FDSTIVARQRVTYSM 112 + + + + ++ + + N FD + ++ S Sbjct: 139 TTELV--CRPDVPRFSDVLPILLAYVRSRQAPGKPVLWIAHNAKGFDVPFLNQEFDRCSA 196 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELE-GLDAVAERLGVPVVNR-HSAIGDAA 170 D A ID + L A+ ER G+ H A+ D Sbjct: 197 QVP-------SDWLFVDSLRLARKLKKIDGKKNLVNLVALGERYGLSSEGPSHRAMPDVE 249 Query: 171 ATAFCFDML 179 A + Sbjct: 250 ALCNILPKI 258 >UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L7M7_NAUPA Length = 293 Score = 109 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 66/178 (37%), Gaps = 8/178 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++++D ETTG + + +++ L ++ + + V+ +AM ++ Sbjct: 2 KIVILDTETTG-NKEEDRIIQLSYLVLNENLEIEEIHDELVKPPLPISFEAMAVHHITNE 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + L + ++ +++ N FD ++ ++ ++ F + RV Sbjct: 61 MVEDKPLIKHT--ESYKRLKELNSPENLLVIHNAKFDLDMLKKE--GFNSFFKLIDTFRV 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 H + + + E+ + + N H A+GD F+ L Sbjct: 117 LKHLIPEGKFSLQYNRYALGLYK-KEKDICEKYNIQI-NAHDALGDVIVLGLLFEYLV 172 >UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas RepID=B4SPA5_STRM5 Length = 479 Score = 109 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 50/199 (25%), Gaps = 13/199 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF---VPHITVEQLAAADPKAMEI 57 MA + DLET G D + + D + + P A + Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSP 116 G + E ++E + E + FD V P+ Sbjct: 61 TGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYER 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSAIGD 168 L D+ L+ +AE V + H A+ D Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD 180 Query: 169 AAATAFCFDMLRHTAAAHL 187 AT L + L Sbjct: 181 VRATIG-MARLFKQSQPRL 198 >UniRef50_D1W6A9 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1W6A9_9BACT Length = 904 Score = 109 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 11/179 (6%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEING-Y 60 + ++V D ETTGL+ V++ + + G+ + + + + EI Sbjct: 520 QDIVVFDTETTGLNVFEDDIVQIAAVRMRQGKVVPGSSFVVFMETDRDIPQQLGEIENPL 579 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + A D++ + G N +D I+ Y L Sbjct: 580 IAEMQRHVLHSH---AEGLQMFMDYVGDSMLLGHNADYDYHILDFNLQRY------LPAI 630 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L + +L L + L + N H A D AT Sbjct: 631 SLKEQCPRYLDSLKLVRLLEPNLREYKLKHLLSVLHLEGENAHLADADVDATCNVVRHC 689 >UniRef50_B0UJH8 Exonuclease RNase T and DNA polymerase III n=2 Tax=Methylobacterium RepID=B0UJH8_METS4 Length = 222 Score = 109 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 60/186 (32%), Gaps = 21/186 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVD-----TGESLYFVPHITVEQLAAADPKAM 55 + +L+ VD+ETTGL + V G + +D G + H+ + + P+A Sbjct: 18 LPGRLLAVDVETTGLGAE-DRVVSFGAVLLDTATLLGGSPVLACHHLIFDPGRPSHPRAE 76 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 ++GY + L + + + N AFD +AR+ P Sbjct: 77 AVHGYDDWLLRHQDPARGHLDAVAALLA---GADLVVAHNAAFDLGFLAREFRAAGRPDP 133 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAF 174 LDAV R+ + H A+ DA Sbjct: 134 ARPTYCTM-----------EAYRRRGEPGSSALDAVCRRVKLARAGARHGALEDAWLALR 182 Query: 175 CFDMLR 180 + L+ Sbjct: 183 VYLWLQ 188 >UniRef50_Q01D40 Xpmc2 protein (ISS) n=2 Tax=Mamiellales RepID=Q01D40_OSTTA Length = 290 Score = 109 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 6 IVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G+ D V ++N D L + V+ ++G Sbjct: 93 LALDCEMVGVGEDGRRSVLARVSVVNEDGNVILD----VFVQPTERVTDYRTAVSGVRPN 148 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + V ++ + LRG G + D + P ++ Sbjct: 149 DVK-AESGARTFRVVQAQMSELLRGKVLVGHSLKNDMKAL-----MLDHPKRDTRDTSLY 202 Query: 124 HHRLADLAAYAAGKLNIDPTELEG-LDAVA-ERLGVPVV-NRHSAIGDAAATAFCFDMLR 180 H L L +A + LG+ + HS++ DA A + Sbjct: 203 HPLTRPLRPEERCVPGAPRGRGCRALRDLARQHLGLEIQTGEHSSVDDARAALALYKKFA 262 Query: 181 HTAAAHL 187 A L Sbjct: 263 KKWEASL 269 >UniRef50_UPI000185C08E DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C08E Length = 195 Score = 109 bits (273), Expect = 5e-23, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 11/177 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEINGYY 61 + VD+ETTGLD + +G + V+ + + + + + ++ ++G Sbjct: 21 WLAVDVETTGLDPSKDQLLSIGWVAVEGRDIVLEESGHLIIRPEREEVSVGESATVHGLT 80 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + VA G++ + LRG + + Y + V Sbjct: 81 DDMVATGV----EAEVAVGKLLEALRGRKLLAHYARMEVGFLDPLCRKYFDARFDVPVAD 136 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + L ++ ++ G+P H A DA A A + Sbjct: 137 TMTREYDAI----LRANREPVRDELRLWSLCDKYGIPRFKAHHAFNDALACALVWLA 189 >UniRef50_Q2Q0H1 Putative DNA polymerase type III, exonuclease domain n=1 Tax=uncultured organism HF70_19B12 RepID=Q2Q0H1_9ZZZZ Length = 270 Score = 109 bits (273), Expect = 5e-23, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 22/182 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI---TVEQLAAADPKAMEINGY 60 +++ D ETTGL+ ++ + G + ++ +M ++G Sbjct: 8 KVLGFDTETTGLNPRKDRILQYAFI----GRDVDGSSVCQVELIDPGIKIPEASMNVHGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTV 119 + + ++ + + G G N AFD + + + Sbjct: 64 SNEDVTGRG----SFGMHSNDIAELIDGAIIVGHNINAFDWRFIEFEFMRVGEAVPSP-- 117 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L D A G L + +R G+ + HSA DAAAT + Sbjct: 118 -----YALVDTLELARGLRI---PGRHTLGHLCKRYGIGLDRAHSADADAAATLILLWKM 169 Query: 180 RH 181 Sbjct: 170 IE 171 >UniRef50_Q0VMJ4 Nuclease, putative n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VMJ4_ALCBS Length = 173 Score = 109 bits (273), Expect = 5e-23, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 62/178 (34%), Gaps = 10/178 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 ++ +D ETTGLD TA V + + + G L + + + ++ I+ Sbjct: 1 MVAIDCETTGLDSRTAELVSIAAVVIKEGRVLSSQSLNVKLAAPDSLREDSICIHRLRPV 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A + + G AFD ++ R P + Sbjct: 61 DLEGG----ASIREALEALLALIDNRPLVGWCVAFDVAMINRYLRPLMGFDLPNDTLELS 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L D T DA+A L VPV+ RH+A GDA +A + L+ Sbjct: 117 A-----LYQRKMRYWQPDITPDLRFDAMASALQVPVIERHTARGDAVTSALMYLQLQK 169 >UniRef50_Q47RH7 DNA polymerase III, epsilon subunit n=1 Tax=Thermobifida fusca YX RepID=Q47RH7_THEFY Length = 210 Score = 109 bits (273), Expect = 5e-23, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 20/167 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK---AMEI 57 M +D ET + + VGL+ V G + V A D + + Sbjct: 1 MHDTWTAIDFET--ANRNQGSVCAVGLVRVTDGRIVDRYT-TLVRPPAPVDHFEQDNIAV 57 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + ++ G+ F N FD ++ +P L Sbjct: 58 HGITPEHVADA----PAWPQVHTTILEFAAGSPFVAHNAVFDMGVIRAACAHAGLPEPSL 113 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + + L V +G + H+ Sbjct: 114 HYA----------CSLDIARRTWPALRNHRLPTVCRTIGYDLRRHHT 150 >UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xanthomonas albilineans RepID=D2UDX2_XANAL Length = 492 Score = 109 bits (273), Expect = 5e-23, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 51/199 (25%), Gaps = 13/199 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEI 57 M + DLET G D + + D + + P A I Sbjct: 14 MPDSFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPVATLI 73 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSP 116 G + RE + E E + T ++ FD + P+ Sbjct: 74 TGITPQQALREGINEADAFARIAEQMAQPQTCTLGYNSLRFDDEFIRHGLFRNFHDPYER 133 Query: 117 LTVGRVWHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIGD 168 G L D+ D L+ +A GV + H A+ D Sbjct: 134 EWRGGNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVRDGDAHEALSD 193 Query: 169 AAATAFCFDMLRHTAAAHL 187 AT L Sbjct: 194 VYATIGMARHF-RRCQPRL 211 >UniRef50_D1Y3R1 Putative DNA polymerase III PolC-type (PolIII) n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3R1_9BACT Length = 351 Score = 109 bits (272), Expect = 6e-23, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 53/185 (28%), Gaps = 17/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYER 63 +V+D+E+ G Y P+E+ + V ++ G Sbjct: 15 YVVLDVESQG--YARFCPIEISAVRFAPDGQCLDAYSSLVRPRVARVSRYVSDLTGITTD 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRV 122 + R L G ++D++ + G D I+ Sbjct: 73 MVRRAPLP----REVIGSLRDFIGDSVIVGHAVAENDLPIIDHFCQELYHARLEN----- 123 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D +A T L A+AE + H A D TA + + H Sbjct: 124 ---LYVDTFYWAQALFPALGTGHYNLKALAEHFVIDAQTFHRAEADCRTTARLYQ-ILHD 179 Query: 183 AAAHL 187 AA L Sbjct: 180 AAQRL 184 >UniRef50_A0KJY7 DNA polymerase III, epsilon subunit n=2 Tax=Aeromonas RepID=A0KJY7_AERHH Length = 208 Score = 109 bits (272), Expect = 6e-23, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 10/181 (5%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGY 60 A + + +D ETT LD A V +G + + L I V+ A+ ++ I+G Sbjct: 28 ADEWVALDFETTSLDPAQAEIVAIGAVRIQGNRVLTGEALSIRVQAPASLSEHSVVIHGL 87 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + E + ++ G + A+D I+ Sbjct: 88 RHQDLQQGMTLEAA----LRLLLAFIGPRELVGYHIAYDLRILNLACQRC-----WGLTL 138 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ L + D L A++ +G+P + H A+ DA A F L Sbjct: 139 AQRGIEVSRLYHDHLYRRYPDAAIDLHLAAISSHIGLPTLPAHDALSDAITAALIFLRLT 198 Query: 181 H 181 Sbjct: 199 R 199 >UniRef50_B9KV46 Exonuclease n=1 Tax=Rhodobacter sphaeroides KD131 RepID=B9KV46_RHOSK Length = 293 Score = 109 bits (272), Expect = 7e-23, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 42/179 (23%), Gaps = 24/179 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVG-LLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + I +D+ET D ++G V DP + ++G Sbjct: 11 RFIALDVETACSDAG--SICQIGLACVFPDNRI--HTFSTLVNPGTRFDPFNVRLHGIGP 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + L + + FD + + Sbjct: 67 DHVSGALR----FDELLDHLFPLLSRHHLVQHS-NFDKQALNAACRSCGREPP------- 114 Query: 123 WHHRLADLAAYAAGKLNIDPT---ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + GL + LG+ N H A DA A A Sbjct: 115 ---DFRWADSVTIARRAWPELLRNGGHGLGNLKRVLGLDF-NHHDAGEDARAAALVVLH 169 >UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFI1_LIBAP Length = 471 Score = 109 bits (272), Expect = 7e-23, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 51/200 (25%), Gaps = 15/200 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEI 57 M ++ D ET G D P + + VD V DP+A+ I Sbjct: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + R+ + E + + + +N FD Sbjct: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR- 119 Query: 118 TVGRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIG 167 + R L A L +A G+ VN H A Sbjct: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179 Query: 168 DAAATAFCFDMLRHTAAAHL 187 D AT L L Sbjct: 180 DVYATLALV-WLIREKKPKL 198 >UniRef50_A6GQ42 DNA polymerase III subunit epsilon n=1 Tax=Limnobacter sp. MED105 RepID=A6GQ42_9BURK Length = 308 Score = 109 bits (272), Expect = 7e-23, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 56/179 (31%), Gaps = 27/179 (15%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNV----DTGES--LYFVPHITVEQLAAADPKAMEI 57 +++VVD ETTGLDY T +EVG + + DTG + E A P+ I Sbjct: 45 KVLVVDTETTGLDYATCEVIEVGAVLIEVDQDTGAIGAVLGTFGGLEEPKVAITPENSAI 104 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + E E + N AFD + R+ Sbjct: 105 HGITNEMVKGQRFDEAALKALCSEAALF------VAHNAAFDKPFMLRRFP--------- 149 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 W + + + L+ + G H A+ D A Sbjct: 150 -----WLEKSIWACTFRELPWTQENYSGRKLEYLLSDCGY-FHGAHRAVEDCNALVHVL 202 >UniRef50_A3KH10 Interferon stimulated exonuclease gene 20-like 2 n=2 Tax=Danio rerio RepID=A3KH10_DANRE Length = 321 Score = 109 bits (272), Expect = 7e-23, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 48/190 (25%), Gaps = 27/190 (14%) Query: 4 QLIVVDLETTGLDYDTA--LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G A +++ D V+ + +G Sbjct: 135 KYLALDCEMVGTGPKGAQSELARCSIVSYDGDVVYDK----YVKPINPVTDYRTRWSGIR 190 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L A E+ + G G D + + Sbjct: 191 RQDLLHAT----PFYHAQKEIVKIITGKVVVGHAIHNDFKALK---------YFHPAFQT 237 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV---NRHSAIGDAAATAFCFD 177 R+ K + L + + L + HS++ DA AT + Sbjct: 238 RDTSRIP----LLNEKAGFPEKQCVSLKKLTQAILKRDIQTGYRGHSSVEDAKATMELYK 293 Query: 178 MLRHTAAAHL 187 ++ L Sbjct: 294 VVERMWEQKL 303 >UniRef50_A1SRL7 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRL7_PSYIN Length = 228 Score = 108 bits (271), Expect = 8e-23, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 8/167 (4%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 L+ +D+E TGLD V +G++ + + + ++ + ++ I+G Sbjct: 40 EATLLALDIEMTGLDPKKDQMVSIGIIPIINAKIQPEFAQHKLIKIQGSVGQSAVIHGVL 99 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L A + + + + D + + + Sbjct: 100 DKDLADAL----PLEEALQWLFEQCKDKVLVAHHAQLDLQFLQQSLSKSG----AHSFSM 151 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + L K + T L+A +R +P+ N H+A+ D Sbjct: 152 LAIDTLIIEKERELRKHQVLKTGSLRLNACRDRYNLPIYNAHNALTD 198 >UniRef50_A2PLZ2 Gp39 n=2 Tax=Vibrio cholerae RepID=A2PLZ2_VIBCH Length = 185 Score = 108 bits (271), Expect = 8e-23, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 12/184 (6%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I++D ETTGLD D A +EV +++ TG L V L + P+ I+G + Sbjct: 10 IILDTETTGLDSD-ARILEVSIIDAQTGIKL---YSSLVNPLCSISPEVTAIHGITNDMV 65 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP-FSPLTVGRVWH 124 + W +++ +L + N FD + A+ + P + + Sbjct: 66 ----IDMPTFDKVWNDIKGYLSDSVIYVYNLDFDYRMFAQSLRPFGYPVANLVHFFGGGV 121 Query: 125 HRLADLAAYAAGKLNIDPTELE-GLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRH 181 + A + D T L + V + H A+ D T + + Sbjct: 122 CVMRWYANFYGSLCGNDVTPRFQRLTNACYQQDVDTSDLTAHRALADCEMTRRLINAVNA 181 Query: 182 TAAA 185 A Sbjct: 182 RLGA 185 >UniRef50_A0JYL8 DNA polymerase III, epsilon subunit n=8 Tax=Micrococcaceae RepID=A0JYL8_ARTS2 Length = 254 Score = 108 bits (271), Expect = 8e-23, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 10/179 (5%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 DLETTG + A V + VD S+ + +A E++G Sbjct: 28 AAFDLETTGRNSRAARIVTASVTVVDADGSVITEHEWLADPGIEIPAEASEVHGVTTERA 87 Query: 66 YREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 E + V + G N ++D T++A + Y +P ++ Sbjct: 88 RLEGRPAAEVTRELASVLQGLFDDGIPVIAFNASYDFTVLAAESARYGIP-------QLN 140 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D +++ L A+ E V + N H++ DA AT D + Sbjct: 141 RFPVLDPYIM-NKQVDRFRKGKRTLTALCEEYKVNLDNAHTSAADALATLRMLDAMAGK 198 >UniRef50_C0GGY8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGY8_9FIRM Length = 198 Score = 108 bits (271), Expect = 9e-23, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 46/177 (25%), Gaps = 26/177 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV----DTGES--LYFVPHITVEQLAAADPKAMEING 59 VD+ETTGL VE+ + D+GE + E P A ++G Sbjct: 13 CFVDVETTGLSPRKEEIVELAICLFAYRRDSGEITRIVDRYVGQREPGVPVSPGAARVHG 72 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + L + N +FD VAR Sbjct: 73 LRMADLRGKQLDTARIEAILHS------AEFIVAHNASFDRGFVARLFPVSGRK------ 120 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L + + GL + + H A D AT Sbjct: 121 --------QWLCSMSGIDWKGKGFPSRGLQNLLRAHRIDAGRAHRAEDDVLATLKLL 169 >UniRef50_C0WKD3 DNA polymerase III epsilon subunit n=5 Tax=Corynebacterium RepID=C0WKD3_9CORY Length = 470 Score = 108 bits (271), Expect = 9e-23, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 50/183 (27%), Gaps = 14/183 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 + VD+ET + + ++G + G + + I+G Sbjct: 125 DFVAVDVET--ANDNWGSICQIGAVRYRDGGETASQSWLCTPPPGLEHFAEINISIHGIT 182 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A A E+ D++ + N FDS+ + + + + Sbjct: 183 AADVEGAM----PFATAAAELFDFIGSDVIVAHNVQFDSSALRSGLLAAGADVPTVPLAC 238 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 A + + L V + LG H A DA A L Sbjct: 239 SLALSRD------ASRQGVISVANHKLPTVVKHLGGASFTHHDATEDARAAGTIITGLAQ 292 Query: 182 TAA 184 Sbjct: 293 RFG 295 >UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacteria RepID=A5CVQ8_VESOH Length = 473 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 22/197 (11%), Positives = 48/197 (24%), Gaps = 13/197 (6%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV--PHITVEQLAAADPKAMEINGY 60 K D ET G+ + + D ++ + P+ I G Sbjct: 2 KTFYWYDYETFGISPKIDRISQFAGIRTDENFNILDEQMFYCKPTNDCLLSPETCLITGI 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSPLTV 119 + ++ + E + ++ FD + P++ Sbjct: 62 SPQLCEQKGMIEHKFIKKIHAQLSTPDTCVIGYNSIRFDDEFTRYALYRNFIDPYTWHWK 121 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTEL---------EGLDAVAERLGVPVVNRHSAIGDAA 170 + D+ + LD ++ + H+A+ D Sbjct: 122 NGNTRWDILDVVRLCYALKKDTSLKWVYDEQNKVIFKLDQLSLANNIEHTYAHNALADVY 181 Query: 171 ATAFCFDMLRHTAAAHL 187 AT + L Sbjct: 182 ATIAI-AKIIKKTQPQL 197 >UniRef50_Q2W5M2 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease n=3 Tax=Magnetospirillum RepID=Q2W5M2_MAGSA Length = 216 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 57/196 (29%), Gaps = 29/196 (14%) Query: 4 QLIVVDLETTGLD-YDTALP-------------VEVGLLNV---DTGESLYFVPHITVEQ 46 +LI +D ETTG A +E+G + + + G H ++ Sbjct: 13 RLIAIDAETTGFRVPTAAEIKKMPKGLRLPGVMIEIGCVELLRGEDGWKTGESWHRRIQP 72 Query: 47 LAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ 106 ++ ++G L Q E + ++ + + + + + Sbjct: 73 GGPIAKASIAVHGITPAELKDA----PQFRDVLDEFETFIGQDMLLAHSAENEIEFLNFE 128 Query: 107 RVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN---RH 163 V + + LD + +RL + + H Sbjct: 129 YARVG----RCGFDDVIFSDNDFVCTQELSRQFFPGVPG-SLDVLCDRLWIDRSDRFEHH 183 Query: 164 SAIGDAAATAFCFDML 179 A+ DA TA F + Sbjct: 184 GALLDAILTAEAFMKM 199 >UniRef50_A7HF37 Exonuclease RNase T and DNA polymerase III n=10 Tax=Bacteria RepID=A7HF37_ANADF Length = 213 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 55/187 (29%), Gaps = 17/187 (9%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH---ITVEQLAAADPKAMEINGYYER 63 +D+ET GLD + +G++ V G + + ++ + + Sbjct: 31 AIDVETGGLDAKRDPLLAIGMVPVRAGRIRLGECYRTLVRPHAGTRITSASVTAH----Q 86 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + EV+ R + A D + R + + V Sbjct: 87 LVSNDFEAAPPLGDVLPEVERRAREGALLFHHAAIDVAFLRRDFARTGLTWPSCPVVDTA 146 Query: 124 HHRLADLAAYAAGKLNIDPTEL----EGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + +L L LG+P H A+ DA ATA F L Sbjct: 147 RLLV------RHAQLRDPTRPRDHIALNLSVARAELGLPEYQAHDALSDAIATAELFLAL 200 Query: 180 RHTAAAH 186 R A Sbjct: 201 RMALGAR 207 >UniRef50_D1PSL1 Putative DNA polymerase III, epsilon subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSL1_9FIRM Length = 318 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 16/186 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D+ETTGLD++ ++V +L++DTGE L ++ P+A +N + + Sbjct: 120 VSIDIETTGLDFNQDEILQVSILDIDTGEVLL-DSYVKPYFTEDW-PEARRVNHITKEMV 177 Query: 66 YREALTEQQTAVAWGEVQD-WLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + T G N FD+ + Y F+ T+ Sbjct: 178 CNA----PYIYELLPRLNQVLAQVKTIVGYNFTGFDNGFL----TRYGASFNDETIVEDL 229 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV--VNRHSAIGDAAATAFCFDMLRH 181 + A + + K + L A+ G H+++ D ATAFC+ + Sbjct: 230 SNIFAAIYGEFSPKHGDFKFKN--LSTCADYFGYDWGEETAHNSLADCRATAFCYKKTQE 287 Query: 182 TAAAHL 187 L Sbjct: 288 EMYQEL 293 >UniRef50_C9LQ99 Exonuclease n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQ99_9FIRM Length = 207 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 57/183 (31%), Gaps = 19/183 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYE 62 + +D ET +A +G+ D E + + DP M +NG Y Sbjct: 2 KYAAIDFETAYWGPGSA--CSLGISVSDGNEITE-EWYRLIRPYRMNFDPICMRVNGIYP 58 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +E W EV + L G+ N FD ++A Y +P Sbjct: 59 DDVEKE----PAFPAFWKEVAERLEGSIVFAHNARFDMGVLASVLDVYDLPD-------- 106 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 A ++ LD VA LG N H A+ DA A Sbjct: 107 --IHFLYGDTVAVSRMLWKELPNHKLDTVAGSLGYDF-NHHQALDDARACEMIVRKAVEK 163 Query: 183 AAA 185 A Sbjct: 164 TEA 166 >UniRef50_Q8NQY3 DNA polymerase III epsilon subunit and related 3'-5' exonucleases n=4 Tax=Corynebacterium RepID=Q8NQY3_CORGL Length = 218 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 64/188 (34%), Gaps = 16/188 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA--ADPKAMEINGYY 61 +L+ VD+ETTGL V +G + ++ V + + + + I+ Sbjct: 35 KLLAVDVETTGLKPHRHQIVSIGWVPINGDVIDLSGAGYVVIRGSEGFSVGSSAVIHQLT 94 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPLT 118 + + A G++ L+G + ++ + + + + Sbjct: 95 DDEIAAGI----DIKEALGQLLQALQGRAMLAHFSPIERDFISAACLKHFGTLLDVPLVD 150 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + ++ E L + +R G+P + H A+ DA A A + + Sbjct: 151 TFAMERRHMERMST-------YPRGEDLRLARIRQRYGLPNYSNHQALTDALACAEVYLV 203 Query: 179 LRHTAAAH 186 A+ Sbjct: 204 QITHLRAN 211 >UniRef50_B8HX99 Exonuclease RNase T and DNA polymerase III n=2 Tax=Chroococcales RepID=B8HX99_CYAP4 Length = 164 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 21/175 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D ET + VGL+ V+ + + ++ + I+G Sbjct: 4 FVAIDFET--ANRAKESACAVGLVRVENLQIVQKAYYLICPPQPHF--EFTHIHGIRWTD 59 Query: 65 LYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + W E+ + + A N FD +++ +Y +P Sbjct: 60 VAAQ----PTFGDLWSELHPLIAGTDFIAAHNAGFDRSVLHACCNSYGIPRPAQNF---- 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + L V LG+ + H A+ DA A A Sbjct: 112 ------ICTVQLARRTWSLYPT-KLPDVCRFLGLELD-HHHALSDAEACAQIVIA 158 >UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=EX1_BUCAP Length = 482 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 50/197 (25%), Gaps = 15/197 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEINGY 60 + D ET G+ P + + D ++ + DP ++ I G Sbjct: 11 NFLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSSILITGI 70 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + E + + +V +N FD I + Sbjct: 71 TPEYTEKHGFNEYKFSKKIHDVLLKPNTCIIGYNNINFDDEITRNIFYRNFLD-PYEWSW 129 Query: 121 RVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGDAA 170 + + R L A + L + ++ + N H A D Sbjct: 130 KNNNSRWDLLNVVRACYALRPSGIQWPKNEFGLPVFKLSDLTQKNNISHYNAHDATSDVY 189 Query: 171 ATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 190 ATIEL-AKLIKRKQPKL 205 >UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=B3PLL7_CELJU Length = 497 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 49/196 (25%), Gaps = 13/196 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEINGY 60 L D ET G PV+ + D ++ + P+A I G Sbjct: 8 TLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEACLITGI 67 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSPLTV 119 + + ++E A ++ FD + P+ Sbjct: 68 TPQEAEAKGVSEADFIAAIHRELARPGTCGVGYNSIRFDDEVTRYTLYRNFYDPYEREWR 127 Query: 120 GRVWHHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 L D+ T L+ + E + H A+ D A Sbjct: 128 NGNSRWDLIDVLRMTRALRPEGIHWPDYEDGTPCFKLERLTEVNRISHEAAHDALSDVHA 187 Query: 172 TAFCFDMLRHTAAAHL 187 T L + L Sbjct: 188 TIA-MARLLKSRQPKL 202 >UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepID=Q4K7B4_PSEF5 Length = 497 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 50/194 (25%), Gaps = 12/194 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEINGYY 61 L D ETTG++ P++V + D + + P A I G Sbjct: 26 LFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGIT 85 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSPLTVG 120 L + L E E + FD + P++ G Sbjct: 86 PGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREWQG 145 Query: 121 RVWHHRLADLAAYAAGKLNID-------PTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 L D+ A L+ + G+ H A+ D AT Sbjct: 146 GNSRWDLIDVVRTAYALRPQGIVWPEEQGQVSLKLERLTAANGIDHGQAHDALSDVRATI 205 Query: 174 FCFDMLRHTAAAHL 187 L L Sbjct: 206 AL-ARLVRDKQPRL 218 >UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S7Q3_PROA2 Length = 189 Score = 107 bits (269), Expect = 2e-22, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 60/189 (31%), Gaps = 13/189 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEING 59 K+++ D+ETTG + +++G + G + + A P A+ I+G Sbjct: 3 QHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDGVVVEECNLKCAPHEGAEISPDALAISG 62 Query: 60 YYERGLYREALTEQQTAVAWGEV------QDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 L + + + D AG N FD + + Sbjct: 63 TERSELESRMTSHEAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQAWFRHHGDK 122 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDP--TELEGLDAVAERLGVPVVNRHSAIGDAAA 171 + +G + R+ D K L+ V G+ + + H A+ D A Sbjct: 123 Y---GIGSFINWRMLDPLPLLFIKDFTRQITLPDYRLETVCRHFGIAL-HAHDAMSDIRA 178 Query: 172 TAFCFDMLR 180 T L Sbjct: 179 TRELLLKLL 187 >UniRef50_UPI00015B42FE PREDICTED: hypothetical protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B42FE Length = 283 Score = 107 bits (269), Expect = 2e-22, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 27/184 (14%) Query: 4 QLIVVDLETTGLDYDTALPV-EVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++ +D E G+ T V V ++N V+ ++G Sbjct: 117 KVVAMDCEMVGIGDGTDSMVARVSIVNRHGYCVYDK----YVKPTEKVKDYRTAVSGIQP 172 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L T Q V EV + LRG T G D ++ Sbjct: 173 HHLE----TGQDFKVVQKEVAEILRGRTLVGHALHNDLAVL---------------FLSH 213 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 D + Y + L +A E LG+ + + H +I DA AT + + R Sbjct: 214 PKRFQRDTSRYKVFRKVTKGN-TPSLKKLASELLGLDIQSAEHDSIEDARATMQLYQLFR 272 Query: 181 HTAA 184 Sbjct: 273 KKWE 276 >UniRef50_A5CX11 DNA polymerase III epsilon subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A5CX11_VESOH Length = 223 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 63/180 (35%), Gaps = 15/180 (8%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++LIV+D ETTG+ + +E+G + + + + Q ++ I+G Sbjct: 2 ERLIVLDTETTGIKPSEGHRIIEIGCIEIIDRQITKNNKYHEYIQPNRNVGDSVRIHGIT 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L ++ + E +++ T N FD + + + Sbjct: 62 DKFLTKK----PKFKEVVEEFLAYIKETTLIIHNAPFDLGFLNHELKLIGINERIEDKCT 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + + + K T LD++ R + R H A+ D A + + Sbjct: 118 I-------IDSLELSKQQRPGTL-HNLDSLCRRFKIDSSARTVHGALLDVQILAQVYLAM 169 >UniRef50_A4A420 Exonuclease family n=3 Tax=unclassified Gammaproteobacteria RepID=A4A420_9GAMM Length = 221 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 14/187 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D E +GLD A + +G + V E + + + ++ I+ + Sbjct: 40 DFLVCDAEMSGLDPRQAELLSLGWVRVSGLEIALGSARHLLIRNRESVGQSATIHQLRDC 99 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + G N A D+ + + + Sbjct: 100 ELRDAG----DVKEGLEALLAAAGGRVLVFHNAALDTAFLDYAAK-------AVFGAPLL 148 Query: 124 HHRLADLAAYAA--GKLNID-PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L + L A ER G+ N H+A+GDA ATA Sbjct: 149 LPTIDTLLLEKRLLQRQERPIGQGDLRLGACRERYGLTTHNAHNALGDAMATAELLLAHI 208 Query: 181 HTAAAHL 187 L Sbjct: 209 AKRGRGL 215 >UniRef50_Q4PER6 RNA exonuclease 4 n=2 Tax=Eukaryota RepID=REXO4_USTMA Length = 375 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 55/190 (28%), Gaps = 30/190 (15%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +D E G+ + V ++N V ++G Sbjct: 134 NYLAIDCEMVGVGDKGSESILARVSIVNFHGATIYD----QFVRPQEKVTDYRTWVSGVR 189 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L + GEV + ++G G D + + Sbjct: 190 PKDLKGA----PSFSQVQGEVANLIKGKVLVGHAIQNDLKAL---------------LLS 230 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV---NRHSAIGDAAATAFCFD 177 + D A + + T+ L +A+ LG+ + HS++ DA AT F Sbjct: 231 HPKVLIRDTATFQPLRDLA-KTKYPSLKKLAKLVLGIDIQLEGESHSSVEDARATMAVFR 289 Query: 178 MLRHTAAAHL 187 + L Sbjct: 290 SQKPKWDEML 299 >UniRef50_Q6BIK6 RNA exonuclease 4 n=4 Tax=Saccharomycetaceae RepID=REXO4_DEBHA Length = 272 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 28/188 (14%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G+ + V ++N V+ ++G Sbjct: 98 KYLAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDK----FVKPRERVTDWRTWVSGVT 153 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A E L G G D + Sbjct: 154 PKHMNEAI----SFQEAQNETSKLLEGRILVGHAIHHDLDAL---------------FLS 194 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVN-RHSAIGDAAATAFCFDML 179 R+ D + Y + +I + L ++ + + HS++ DA AT F + Sbjct: 195 HPKSRIRDTSQYKPFR-SISMGKTPSLKKLSSHFLKIDIQGSAHSSVEDARATMLLFRLH 253 Query: 180 RHTAAAHL 187 R + Sbjct: 254 RKEFEQSI 261 >UniRef50_C1AA06 Exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AA06_GEMAT Length = 323 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 52/176 (29%), Gaps = 25/176 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFV--PHITVEQLAAADPKAMEINGY 60 +VVD+ETTGLD + +E G + D G + +A I G Sbjct: 50 LVVDVETTGLDTARDVIIEFGAVPFDFDGEGRVYTVHPPLSYFEDPGRPIPAEASAITGI 109 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + A + N FD ++ R +P Sbjct: 110 TDDDVRGKRIDDAAVLAALDQ------AVLVIAHNAGFDRRMLER-----RLPAFAAKHW 158 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + + + LD + R+ H A D AT Sbjct: 159 ACSQQEVPWV---------RFGSRSQKLDYLLYRIARAFHTGHRAADDCLATLHLL 205 >UniRef50_UPI000044938D PREDICTED: hypothetical protein n=2 Tax=Gallus gallus RepID=UPI000044938D Length = 441 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 28/186 (15%) Query: 6 IVVDLETTGLDYDT-ALPV-EVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G+ V V ++N+ V+ ++G Sbjct: 268 VAMDCEMVGVGPSGEDSIVARVSIVNLFGKCIYDK----YVKPTEEVTDYRTAVSGIRPE 323 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L T + EV D L G G D ++ Sbjct: 324 HLK----TGEDFKTVQKEVADILNGRILVGHALHNDLKVL---------------FLDHP 364 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNR-HSAIGDAAATAFCFDMLRH 181 ++ D Y + + L + +R L V V H +I DA A + + + Sbjct: 365 KKKIRDTQKYKPFRQRVKNAR-PSLKLLCDRLLDVQVQTSEHCSIQDAQAAMRLYTLEKK 423 Query: 182 TAAAHL 187 A L Sbjct: 424 EWEAAL 429 >UniRef50_Q47TJ3 DNA polymerase III, epsilon subunit n=10 Tax=Actinomycetales RepID=Q47TJ3_THEFY Length = 250 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 5/162 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ D+ETTG++ + V ++ S V P+A+ I+G Sbjct: 15 PLVGFDIETTGINLEQDRVVTAAIIETAADGSQRTRRTWLVNPGVEIPPEAVAIHGISTE 74 Query: 64 GLYREALTEQQTAVAWGEVQDW--LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ + G N FD TI+ R+ Y + Sbjct: 75 LAVADGIPAPVAVAEITDLLEQVLQSGTPLVIMNAPFDLTILDRECRRYGV-VPLSERLD 133 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 + L ++ L+A+ GVP H Sbjct: 134 TVAPVIDPL--ILDRHIDRYRRGKRTLEALCAHYGVPYDGSH 173 >UniRef50_Q31GK8 Exonuclease n=8 Tax=Bacteria RepID=Q31GK8_THICR Length = 207 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 10/179 (5%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYY 61 +++ D ETTGL+ V + + + E L +T Q AA ++++I+ Sbjct: 29 DEVVCFDCETTGLNPRKDRIVSLSAIKIRGNEVLTSEALNLTFVQEAAISEESIKIHWIR 88 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ G FD +V + + P Sbjct: 89 NEDTKAGL----SEQEGIEAFLHFIGSRPLVGYYLEFDVAMVNQIIKPWLGITLPNAQIE 144 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V K+ DA+ + L +P + +H A DA T+ + L+ Sbjct: 145 VSSRYYDYKEEIIPKKII-----DLTFDAILKDLELPNLGQHDAFSDAFMTSLIYIKLK 198 >UniRef50_Q084B5 Exonuclease, RNase T and DNA polymerase III n=8 Tax=Shewanella RepID=Q084B5_SHEFN Length = 229 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 14/183 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L+ +DLE TGLD + +GL+ + G + ++ + ++ ++G Sbjct: 39 LDAPLMAIDLEMTGLDPIHDQVISIGLVPIINGVIPLDKAQHMMISISGSVGQSATVHGI 98 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPL 117 + + A A +G + D + +Q + +P + Sbjct: 99 ----VDNQLHMALTLAEAIDWFLSKTKGYILVAHHAPLDIQFIQQQLIRCFGQSIPLVFI 154 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + R + + L+A R +PV + H+A+ DA + A Sbjct: 155 DTLAIEKKRC-------LMQQPVLKEGSLRLNASRTRYRLPVYSAHNALIDALSCAELLL 207 Query: 178 MLR 180 Sbjct: 208 AQV 210 >UniRef50_C3WAY8 Predicted protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAY8_FUSMR Length = 474 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 57/185 (30%), Gaps = 20/185 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + I+V LETTGL++ +++ + ++ G + ++ +A ING Sbjct: 5 ENYIIVSLETTGLNHLVDEILKIEAIRIENGNIVD-TFKEFIKPKFEIPKEASRINGITF 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++ + + N F S + Y Sbjct: 64 EDVKN----SPSIEDVLDKFKNFRKKGDILVAYNAEFVSKFIGFNFKRYK--------NS 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++ H DL + + L VA L + N+ L++ Sbjct: 112 IFSHEFIDL--LSLVRYIYKNIPSYNLKYVATYLKIDSTNK----DKTIICYEILKNLKN 165 Query: 182 TAAAH 186 + Sbjct: 166 KIGDN 170 >UniRef50_C0W0V1 DNA polymerase III subunit epsilon n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0V1_9ACTO Length = 232 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 55/185 (29%), Gaps = 7/185 (3%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 L+ DLETTG+D V V G + + A++++G Sbjct: 5 NGNLLGFDLETTGVDTARDRIVT-ASYEVRCGSEVLEQVTLLFNPGVEIPQSAIDVHGIT 63 Query: 62 ERGLYREALTEQQ-TAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E L + ++ + G G N FD T++ + Y +P + Sbjct: 64 NERAQAEGLDPRVGLEQLAAKLVSYLSEGAPLVGFNVQFDVTLLENELRRYGLPTVAERL 123 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFD 177 G + + L L + E G+ H + D + T Sbjct: 124 GGRFAPIVDPLVLDRELDRWRKG--KRKLVDLLEVYGIAVDPDELHQSDVDVSMTLSLLQ 181 Query: 178 MLRHT 182 + Sbjct: 182 AMVRK 186 >UniRef50_C1BLC6 Interferon-stimulated 20 kDa exonuclease-like 2 n=1 Tax=Osmerus mordax RepID=C1BLC6_OSMMO Length = 330 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 49/190 (25%), Gaps = 27/190 (14%) Query: 4 QLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G + L++ D ++ +G Sbjct: 158 KYVAMDCEMVGTGPKGRNSELARCSLVSYDGDVMYDK----YIKPGNPVTDFRTRWSGIT 213 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A E+ L G G D ++ Y P Sbjct: 214 WSHMAKAI----TFKEAKKEILKILAGKVVIGHAIHNDFKALS-----YGHPAR----MT 260 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNR-HSAIGDAAATAFCFD 177 R+ K L + + L + R HS++ DA AT + Sbjct: 261 RDTSRIP----LLNKKAGFPEKGCASLKRLTKALFNRDIQTGRRGHSSVEDAKATMELYK 316 Query: 178 MLRHTAAAHL 187 ++ L Sbjct: 317 VVEVEWERTL 326 >UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRC0_9RICK Length = 473 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 58/191 (30%), Gaps = 11/191 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGYY 61 + D ETTG ++VG + V+ F +++ +P A+ +N Sbjct: 2 NYVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEARCSLKPGTVPEPGALLVNKTT 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 L + L+ E + F G N +FD + + Sbjct: 62 PDMLKKTNLSHFGMVQMMKETFEKWSPAMFIGYNSLSFDEEFLRKTFFKSLTDVYLTNTN 121 Query: 121 RVWHHRLADLAAYAAGKLNI--------DPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 + L A + LD +A G+ N H A+GD AT Sbjct: 122 GNKRGDILGLVRSAHLYYPECLKTPISEKGNAVFKLDQIASMNGISHDNAHDAMGDVLAT 181 Query: 173 AFCFDMLRHTA 183 ++ A Sbjct: 182 MGMAKIIADKA 192 >UniRef50_C6XJL2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJL2_HIRBI Length = 298 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 56/179 (31%), Gaps = 27/179 (15%) Query: 8 VDLETTGLDYDTALPVEVGLLNVD---TGESLYF--VPHITVEQLAAADPKAMEINGYYE 62 +D ETTGLDY A +E+ L+ + G+ + F + + + ++ G Sbjct: 45 IDTETTGLDYREAELIEIALVPFEYSTEGKLVTFGKALDQFQQPKSPISEEITKLTGITN 104 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + E + N AFD R +P + Sbjct: 105 EMVAGQKIDIPAVEQLIKE------SDLIIAHNAAFDRPFAER--------LTPAFKAKP 150 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF-DMLR 180 W L D+ + E L +A G H A D AT L+ Sbjct: 151 WACSLVDID------WKEEGYESPKLSFLAMEHGF-YYKAHRADIDCWATIKLLAQRLK 202 >UniRef50_A5FFY1 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FFY1_FLAJ1 Length = 198 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 13/183 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V+ ET+GL+ + + + +G +V + V G Sbjct: 27 PSKFVVLSTETSGLNPNKDVILSLGAFSVIDDSIIIKENFEAVLLQYKFLEDN----GLS 82 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + +T+ A A ++L G + FD ++ Sbjct: 83 NEFIIESKMTKMPEAEALEAFINFLGNAVLVGHHINFDIEMLNAALERLDCGRLKNEALD 142 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + L+ + E +P +R+S+ DA F L+ Sbjct: 143 IDVMYRKLTDI---------NDKQFSLNDLCEIYKIPKSDRNSSAEDAYKIGLLFLKLKS 193 Query: 182 TAA 184 Sbjct: 194 RLG 196 >UniRef50_C7RVE9 Exonuclease RNase T and DNA polymerase III n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RVE9_9PROT Length = 469 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 17/185 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +L + LETTG + ++G+L + V ++NG Sbjct: 3 PARLAFIGLETTGANPLRDRITKIGVLEAEGDRV--STWSTLVNPQRPIPEFIQQLNGSR 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A E+ D L G F + F+ V R+ F Sbjct: 61 DATVADA----PTFAQVAAELADRLHGRLFIAHHARFNYAFVKREFQRLGKSF------- 109 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 R L + + L+++ R + A+ A + +L+ Sbjct: 110 ----RADVLCTVRLSRKLFPEHQKHHLESLMVRHDLTTGVHSGALAAAHLLGQFWCVLKR 165 Query: 182 TAAAH 186 Sbjct: 166 ERGEE 170 >UniRef50_C4QBU0 Rex4-related (Xpmc2) n=1 Tax=Schistosoma mansoni RepID=C4QBU0_SCHMA Length = 751 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 25/183 (13%) Query: 6 IVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D E G+ ++ V ++N L V +++G R Sbjct: 496 IAMDCEFVGVGFEGKDDALARVSIVNQFGHTLLD----TYVRPEERVVDYRTKVSGIRPR 551 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + EV + ++ G + D ++ Sbjct: 552 DLRKNGSARP-FNDVHKEVAELIKNKILVGHSILKDLKVLR---------------LSHP 595 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDMLRH 181 + D + Y + + + L A+ ++ LGV V H +I DA AT + ++ Sbjct: 596 RRFIRDTSRYRPFRDLFNG-RIPSLKALTQKVLGVNVQSGEHDSIEDARATMRLYTSVKR 654 Query: 182 TAA 184 Sbjct: 655 VWE 657 >UniRef50_B8NVL3 RNA exonuclease, putative n=2 Tax=Aspergillus RepID=B8NVL3_ASPFN Length = 368 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 50/192 (26%), Gaps = 33/192 (17%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ +D E + V+V ++V +GE + V +G Sbjct: 155 RSVVAIDCEMVPVGPGQNEVVQVCAVDVLSGEIVVDKG---VVPTKPVTDWCTPWSGMTP 211 Query: 63 RGLYREALTEQQ---TAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + L + A EV + G D + Sbjct: 212 QRLEDMKREGKTVNGWEEARAEVLKFVDGDTILVGHALRNDVRALK-------------- 257 Query: 119 VGRVWHHRLADLAAYAAG-----KLNIDPTELEGLDAVAE-RLGVPVV---NRHSAIGDA 169 + H ++ D A + L + + LG+ + N H + D Sbjct: 258 ---MQHAKVLDTATVTKHAVANEMVGSGCKRTWKLKTLCQDFLGINIQQSRNGHDCVEDT 314 Query: 170 AATAFCFDMLRH 181 AT Sbjct: 315 LATREVLLWCVR 326 >UniRef50_C7U038 Putative uncharacterized protein n=1 Tax=Ostreococcus tauri virus 1 RepID=C7U038_9PHYC Length = 446 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 25/199 (12%), Positives = 54/199 (27%), Gaps = 27/199 (13%) Query: 5 LIVVDLETTGLDYDT-------------ALPVEVGLLNVDTGESLYFVPHITVEQLAAAD 51 + D ET G+ A V + + + + ++ + Sbjct: 8 YVAWDTETCGIPKTRVRPTRENLSKFDDARIVSLSAVKFSSRGREIDTFNRIIKPIGYQV 67 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLR--GNTFAGSNPAFDSTIVARQRVT 109 A I+G + A+ E +++ N N FD I+ + + Sbjct: 68 -GATHIHGITHEYAEEHGV---PFKTAFQEFIEFIGDRCNILCAHNSLFDEGIIGHELLR 123 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVVNRHSAIGD 168 + + + + + L + + G N H+++ D Sbjct: 124 IGLDPNKDF---LDKYIFNCTHEMYKKRF----LSSIKLTNLYKDIFGKEFDNAHNSLAD 176 Query: 169 AAATAFCFDMLRHTAAAHL 187 A A + L L Sbjct: 177 ARACGQVYPYLMGNTKREL 195 >UniRef50_UPI0001B53E3D DNA polymerase III subunit epsilon n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B53E3D Length = 282 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 57/201 (28%), Gaps = 20/201 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L DLET+G+D + V + GE + ++ A ++G Sbjct: 20 RLCAFDLETSGVDVEADRIVTAAAYGLGGGEPVEPH-DWMLDPGVEIPAGATAVHGITTD 78 Query: 64 GLYREALTEQ----QTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E G G N +D T++ R+ Y +P + Sbjct: 79 EARAKGEPAPGGIDHISDVLAEYAR--AGVAVVGHNVPYDFTLLDRECRRYELPTLHDRL 136 Query: 120 GRVWHHRLADLAAYAAG----KLNIDPTELEGLDAVAERLGVPV--VNRHSAIGDAAATA 173 G + + + L +A+ +P H A DA A Sbjct: 137 GETPLYVIDTRVLDQHADPYRRRPSKDQGARQLVTLAQVYELPWDDEGAHGAAYDAVLAA 196 Query: 174 FCFDML-------RHTAAAHL 187 + R + Sbjct: 197 RVAYRIGTLAHMPREDWPERI 217 >UniRef50_A1U7Q5 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U7Q5_MARAV Length = 291 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 51/178 (28%), Gaps = 27/178 (15%) Query: 5 LIVVDLETTGLDYDTALPVEVGL----LNVDTGESL--YFVPHITVEQLAAADPKAMEIN 58 ++ +D ETTG +E+GL ++ TGE + + +I Sbjct: 47 VVWLDCETTGFQAGHDKIIELGLTKGYVDPITGELISLVASVSFYEDPGFPLPEIITQIT 106 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + + Q + N +FD + Sbjct: 107 GITDEMVSGRTIDGVQVRE------WFTDDPIVVAHNASFDRPFFESRFPMLD------- 153 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 +L + E L+ + RLG H A DA ATAF Sbjct: 154 -------QLRWACSMKDIPWQEYGFESTKLEYLLYRLGY-FYEGHRASIDAIATAFLM 203 >UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacteria RepID=Q483M2_COLP3 Length = 487 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 53/200 (26%), Gaps = 16/200 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEING 59 ++ D ET G++ P + + D ++ + T P+A + G Sbjct: 13 PSILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEACLVTG 72 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSPLT 118 + RE L+E + A + ++ FD + P++ Sbjct: 73 ITPQKAQREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYDPYAREW 132 Query: 119 VGRVWHHRLADLAAYAAGKLNID-----------PTELEGLDAVAERLGVPVVNRHSAIG 167 + D+ L+ + + H A+ Sbjct: 133 QNGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEAAHDAMS 192 Query: 168 DAAATAFCFDMLRHTAAAHL 187 D AT L L Sbjct: 193 DVYATIA-MAKLIKEKQPKL 211 >UniRef50_C8PWB9 DNA polymerase III subunit epsilon n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWB9_9GAMM Length = 215 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 58/189 (30%), Gaps = 21/189 (11%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVP--HITVEQLAAADPKAME 56 A + + +DLE TGL+ + VG + V G + + + Sbjct: 38 ANEWVSLDLEMTGLNAKQDYILSVGAVQVRKESNGFVIDTDSALSLVCRPPVMPTHDTIV 97 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 I+G + ++ L+ G D + Sbjct: 98 IHGLRPIDVDNGL----SYDEMLTQLLPMLKNRPIIGFCVDMDMAFLNAIAK-------- 145 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEG----LDAVAERLGVPVVNRHSAIGDAAAT 172 +G ++L D++ + G L+ + E +P + H+A+ DA T Sbjct: 146 PFLGVELANKLVDVSRLYQQNQHRHDPSQVGQLPHLNQLLEEYQIPRLPAHNALNDAIMT 205 Query: 173 AFCFDMLRH 181 A F L Sbjct: 206 AMLFTHLMQ 214 >UniRef50_C0VTT8 DNA polymerase III epsilon subunit (Exonuclease) n=3 Tax=Actinomycetales RepID=C0VTT8_9CORY Length = 427 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 25/185 (13%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + VD ET + + ++ ++ V+ G+ + + + + +G Sbjct: 252 PKFVAVDFET--ANRSSRSACQIAMVKVEYGQIVDRFSTLLKPPPGHDEFEFTYFHGISA 309 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R + ++ ++ N +FD + Y P Sbjct: 310 RDVADA----PSWKFVEPYIRAFVDRLPVYAHNASFDRGVWVSMDSYYGTRTLPEEFY-- 363 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAER----LGVPVVNRHSAIGDAAATAFCF-- 176 +Y K I E L V + + H A DA A A Sbjct: 364 --------CSYRTAKRLIPGLENYKLPTVTKAIAPWFRLD---HHRADSDAEACALIVIG 412 Query: 177 DMLRH 181 + Sbjct: 413 LQMLE 417 >UniRef50_C0NP89 RNA exonuclease n=11 Tax=Onygenales RepID=C0NP89_AJECG Length = 533 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 54/180 (30%), Gaps = 29/180 (16%) Query: 4 QLIVVDLETTGL--DYDTAL-PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +D E G+ + D V ++N + + V ++G Sbjct: 125 RYVALDCEMVGVGQNPDRDSALARVSIVNYNGEQVYDS----FVLPKEEVTDWRTHVSGV 180 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + V +V L G G D + + Sbjct: 181 SPKHMTDAR----EFEVVQRDVAGILDGCILVGHAVRNDLDAL---------------LL 221 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVVNR-HSAIGDAAATAFCFDM 178 H + D + + + L +A E LG+ + HS+I DA AT F Sbjct: 222 SHPKHDIRDTSKHPPYRKIAGG-GSPRLKILASELLGLEIQGAAHSSIEDAQATMLLFRR 280 >UniRef50_A7K3S7 DNA polymerase III, alpha subunit n=8 Tax=Vibrio RepID=A7K3S7_VIBSE Length = 226 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 16/182 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I++D ETTGL D A VE + ++GE + V+ + A I+G + Sbjct: 31 IIIDTETTGLGAD-AEIVEFTAICANSGEVIVDE---LVKPTCSIPADATAIHGITNEDV 86 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + L G N FD+ ++ + + +V ++ Sbjct: 87 KDAPDFHLMFS---NRFLPLLNGRPIIIYNSDFDTRLIIQSLDKHCNAAYVQSVHDLFFK 143 Query: 126 RLADLAAYAAGKLNID-------PTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCF 176 A + + L + V V + H A+ D T Sbjct: 144 FCVPQCAMLWYAEFYGVWNEYHEDYKWQSLTNACAQQHVDVSDLIAHRALADCEMTRRLI 203 Query: 177 DM 178 Sbjct: 204 HA 205 >UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJV3_9GAMM Length = 517 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 51/198 (25%), Gaps = 13/198 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEIN 58 + D ET G + + D ++ + DP A++I Sbjct: 8 PPSYLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVIDPGAVQIT 67 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSPL 117 L + L+E + + A T ++ FD + P+ Sbjct: 68 RLSPLELEQTGLSEWEFSQAVHNAMAQPNTCTTGYNSIRFDDECSRFLFYRNLINPYERE 127 Query: 118 TVGRVWHHRLADLAAYAAGKLNID--------PTELEGLDAVAERLGVPVVNRHSAIGDA 169 L D+ + L+ + G+ N H A+ D Sbjct: 128 WKNGNSRWDLLDVVRMTHALRPDGIEWPRRDDGSPSFRLEHLTAANGLSHANAHDAVSDV 187 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 188 KATIALAQ-LIRKQQPKL 204 >UniRef50_B2A6Q7 Exonuclease RNase T and DNA polymerase III n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6Q7_NATTJ Length = 170 Score = 106 bits (265), Expect = 4e-22, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 15/146 (10%) Query: 30 VDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN 89 ++ GE + + P + I+G + E + W E+ +L N Sbjct: 1 MEAGEIIEKQHWYIRPKPFYFHPYNVYIHGIKPEDVRDE----PDFSEIWREISTYLENN 56 Query: 90 TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLD 149 N +FD +++ Y + + + L + + GL Sbjct: 57 LVVAHNASFDISVLRHVLDLYDLDYP----------QFDYLCTKKLAEKQWPHLDKYGLK 106 Query: 150 AVAERLGVPVVNRHSAIGDAAATAFC 175 ++A+ L V H A+ DA A A Sbjct: 107 SIAKFLDVKFK-HHDAMEDAYACAQI 131 >UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KPJ8_9GAMM Length = 482 Score = 106 bits (265), Expect = 4e-22, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 49/201 (24%), Gaps = 19/201 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHIT---VEQLAAADPKAMEIN 58 ++ L D ET G+D P + L D + P + + P A I Sbjct: 4 SETLYWHDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDACLIT 63 Query: 59 GYYERGLYREALTEQQT-AVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSP 116 G + + E E G N FD T+ ++ Sbjct: 64 GITPQAALAAGVPEADFIKAILHEFMQRGTCA--VGYNSLRFDDTVTRATLYR-NLRDPY 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAI 166 R + L+ + E G+ H A+ Sbjct: 121 AREYGDGRSRWDLIDIVRTAYALRPEGLIWPERDDGLPSFRLEDLCEANGLAQGRAHDAL 180 Query: 167 GDAAATAFCFDMLRHTAAAHL 187 D AT L L Sbjct: 181 VDVQATIAL-ARLLKERQPRL 200 >UniRef50_C8NWG5 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NWG5_9CORY Length = 238 Score = 106 bits (265), Expect = 4e-22, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 19/182 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG+ D VE+G++ +D S+ V +++G E Sbjct: 20 YAVIDFETTGMR-DNDAIVEIGVVLLDKDLSVEDTWEALVNPHRLIL--NTDVHGIEEDD 76 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + R G + L G T + ++ + + + M + Sbjct: 77 VDRGL----TFPALAGYFKHLLHGRTLVAHDATYEKRYLRYEFERWGMDDTVPDT----- 127 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 D ++ L + L + +P + A+ DA+ATA L Sbjct: 128 --WIDTMQLSSRYLGVK-----KLKEALDVAKLPALKTLDALSDASATANLLRHLHEEHD 180 Query: 185 AH 186 A Sbjct: 181 AS 182 >UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YII7_9FLAO Length = 1555 Score = 106 bits (265), Expect = 4e-22, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 57/192 (29%), Gaps = 19/192 (9%) Query: 5 LIVVDLETTGLDYDTA----------LPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPK 53 ++ D ETTGL + V++ D +L ++ Sbjct: 2 YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGNLIENQDYIIKPEGYDIPFN 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSM 112 A I+G + E E L G N FD IV + ++ Sbjct: 62 AARIHGITTKIANEEGRD---LQEILEEFSKVLEKVRVVSGHNVEFDYNIVGAEFYRKNL 118 Query: 113 PFSPLTVGRVWHHRL-ADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGDAA 170 + + L AD G+ + L+ + E+ G H+A D Sbjct: 119 KDNLQEKPKADTMILGADFCQLGGGR--GGRFKPPKLEELYEKLYGSKFDEAHNAAADVN 176 Query: 171 ATAFCFDMLRHT 182 ATA F + Sbjct: 177 ATARAFFEMVRI 188 >UniRef50_A9CIB7 DNA polymerase III, epsilon subunit n=4 Tax=Alphaproteobacteria RepID=A9CIB7_AGRT5 Length = 202 Score = 106 bits (265), Expect = 4e-22, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 17/163 (10%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I +D ET + + VGL ++ G+ + + + P + ++G R + Sbjct: 4 IAIDFET--ANEERGSACSVGLAWIEDGQIVRVEERLIRPRDMRFSPFNIAVHGIRPRDV 61 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + E D G T N AFD +++ Y + + L+ Sbjct: 62 EDA----PEFPEVMEEFIDDFHGATMIAHNAAFDFSVMRASFDKYRLSYPDLSY------ 111 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 L + + L+ +A L + V H+A D Sbjct: 112 ----LCSVKIARHVWPHLVSHKLNVIAHHLQLRFV-HHNAAED 149 >UniRef50_Q1ZEA2 DNA polymerase III, epsilon chain n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZEA2_9GAMM Length = 237 Score = 106 bits (265), Expect = 5e-22, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 50/182 (27%), Gaps = 15/182 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 +VVD ETTGL + +G + + + + HI + + + IN + Sbjct: 50 FLVVDFETTGLIAKYNDIISIGWVEISNLQVVCASQEHIYINNDKKINHETAVINHIVPQ 109 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + +G + + Y Sbjct: 110 MLRQGV----SLHDAINALLIKAKGKILVVHGKVIEQCFLDFYMHQY-------FALPKI 158 Query: 124 HHRLADLAAYAAGKLNIDPT---ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D + + L + R +P H+A+ D+ +TA Sbjct: 159 PLLWIDTLLIEKWRAVQKGMTLAQDNRLGSARIRYNLPQYTAHNALIDSISTAELLLAQI 218 Query: 181 HT 182 Sbjct: 219 AH 220 >UniRef50_B5X4Q1 RNA exonuclease 4 n=1 Tax=Salmo salar RepID=B5X4Q1_SALSA Length = 437 Score = 106 bits (265), Expect = 5e-22, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 28/186 (15%) Query: 6 IVVDLETTGLDYDT-ALPV-EVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G+ D V V L+N V+ ++G Sbjct: 249 VAMDCEMVGVGPDGEDSIVARVSLVNQFGKCIYDKH----VKPTEKVTDYRTAVSGIRPE 304 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + EV + L+G T G D I+ + Sbjct: 305 NIKNG----ENVKTVQKEVAEILQGRTLVGHAIHNDLKIL---------------LLDHP 345 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVV-NRHSAIGDAAATAFCFDMLRH 181 R+ D Y K + + L + E L V V HS++ DA AT + M + Sbjct: 346 KKRIRDTQKYKPFKKIV-KSGRPSLKLLCREILNVKVQQGEHSSVQDAQATMRLYTMAKK 404 Query: 182 TAAAHL 187 A + Sbjct: 405 NWEAEI 410 >UniRef50_Q6VY79 Putative uncharacterized protein n=1 Tax=Streptomyces phage VWB RepID=Q6VY79_9CAUD Length = 263 Score = 106 bits (265), Expect = 5e-22, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 54/184 (29%), Gaps = 10/184 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ DLETTG+D + V +++ + L + A ++G Sbjct: 6 RMVAFDLETTGVDVEQDRIVTAAAIDLGAEKPLTLEW--LADPGIEIPEGATAVHGITTE 63 Query: 64 GLYREALTEQQ-TAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + G G N +D T++ R+ Y +P + Sbjct: 64 HAREHGERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYELPLLQDRLDG 123 Query: 122 VWHHRLA----DLAAYAAGKLNIDPTELEGLDAVAERLGVPV--VNRHSAIGDAAATAFC 175 H + D K + L +A+ +P H DA A Sbjct: 124 TPLHVIDTRVLDQHCLPYRKRVSETQGARQLITLAQVYSLPWDAEAAHGCSYDALMAARI 183 Query: 176 FDML 179 + Sbjct: 184 AYRI 187 >UniRef50_UPI0001B52926 exonuclease, RNase T and DNA polymerase III n=3 Tax=Fusobacterium RepID=UPI0001B52926 Length = 191 Score = 106 bits (264), Expect = 5e-22, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 67/189 (35%), Gaps = 15/189 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEV-GLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++I +D ET G++ + + +++ G++ +D + F +I + + + KA+E+ G Sbjct: 2 NKIIFIDTETGGVNPEKSALIQLSGIIRIDKKDVEKFNFYIKPFENSEVNEKALEVQGRT 61 Query: 62 ERGLYREALTEQQTAVAWGEVQ----------DWLRGNTFAGSNPAFDSTIVARQRVTYS 111 L E E+ + + D AG N FD I+ + Sbjct: 62 LDELKAEKYIEE--KEVYKQFINLLDKYIDKYDKTDKFIVAGYNVRFDVDILKALFQRHG 119 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 F + L + + E L+ + G+ + H ++ D A Sbjct: 120 NNFLFSYLDSSMLDPLYSIRLLQIA-GILPVLENNKLETWCKHFGIELK-AHDSLEDIVA 177 Query: 172 TAFCFDMLR 180 T L Sbjct: 178 TKKLIGKLI 186 >UniRef50_Q2S3Z9 Exonuclease, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3Z9_SALRD Length = 249 Score = 106 bits (264), Expect = 6e-22, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 53/188 (28%), Gaps = 20/188 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEI 57 + + L+ DLE TG D A +++G+ G +L + V+ ++ Sbjct: 4 LERPLVFFDLEATGTDPQAARIIQIGMQRFVPSGDGAALDETIDVLVDPQEEIPAAVTDL 63 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSP 116 G + + + L AG N A+D ++ + + Sbjct: 64 TGLSPDAVRQA----PPLGAHLDRIAPLLADADLAGYNALAYDIPLLQAEFERHGRTLPG 119 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFC 175 V L A+ ER G + + H A+ D A Sbjct: 120 PDDRVVLDP-----------YRLEQVLRPRTLSALYERYTGDALDDAHDALSDVEAAGRV 168 Query: 176 FDMLRHTA 183 Sbjct: 169 LQRQLADH 176 >UniRef50_D1BPK1 UvrD/REP helicase n=3 Tax=Veillonella RepID=D1BPK1_VEIPT Length = 862 Score = 106 bits (264), Expect = 6e-22, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 63/179 (35%), Gaps = 13/179 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++V D+E+TG D +++ + +D + + ++ E++G+ + Sbjct: 493 EVVVYDVESTGTDTAQDRIIQIAAIRIDEDGQVLETFERFINPGVPV-GQSEEVHGFSDA 551 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ A+ +++ + G N +D TI + +++ + Sbjct: 552 YLQEHG---EEPAIVLQAFKEFSKNAIIVGHNVNYDVTIFTNELARHNLGNPE------F 602 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L Y + L +A + + H+A+ D ATA Sbjct: 603 KAIYDTLDIY---RRFYPNLPNHKLGFLASKFPIHHEPTHNAMDDILATAQLLIYAVKE 658 >UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellular organisms RepID=A5FKC9_FLAJ1 Length = 1510 Score = 106 bits (264), Expect = 6e-22, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 50/191 (26%), Gaps = 16/191 (8%) Query: 5 LIVVDLETTGLDYDTA----------LPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPK 53 ++ D ETTGL +++ D L V+ Sbjct: 2 YLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLIEHQDYLVKPEGFNIPYD 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQRVTYSM 112 A I+G + + A + + G N FD I+ + + Sbjct: 62 AERIHGISTELAEADGI---TLAEVLEKFNIALSKTKFIVGQNLGFDVNIMGAEFHRMGV 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGDAAA 171 ++ + + +L L + P H+A D A Sbjct: 119 ESQMASMPVLDTCTEVTASLLQLPGGRGGKFKLPTLTELHSYLFDQPFAEAHNATADVEA 178 Query: 172 TAFCFDMLRHT 182 T CF L Sbjct: 179 TTRCFLELVRR 189 >UniRef50_UPI0000E474E4 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E474E4 Length = 225 Score = 106 bits (264), Expect = 6e-22, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 23/189 (12%) Query: 3 KQLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 ++++ +D E GL +++ V+ + +G Sbjct: 32 REVVAIDCEMVGLGPKGRFTALARCSIIHHSGEIIYDS----YVKPDEPITDYRTKWSGI 87 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R + A +V++ L+ G D + P V Sbjct: 88 RPRNMVNAI----PFNEAQEQVKNLLKDKIVIGHAVWNDFQALK-------FSHPPNDVR 136 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVV-NRHSAIGDAAATAFCFDM 178 +L P + GL ++A+ L G+ V HS++ DA A + + Sbjct: 137 DTSKCKLLA----EIYGSKCTPGQHLGLKSLAKYLLGIDVQRGEHSSVEDARAAMDLYKL 192 Query: 179 LRHTAAAHL 187 + L Sbjct: 193 VEDKWEEEL 201 >UniRef50_A0Y7J9 Putative exonuclease n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y7J9_9GAMM Length = 255 Score = 105 bits (263), Expect = 7e-22, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 15/177 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTGL +TA +E+ +L+ + L + V+ A E++G R L Sbjct: 43 VILDTETTGLS-ETAQLIEICILDFEGNILL----NERVKPSVKVSKGAREVHGIKARDL 97 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + + + G N FD I+ + +++ + Sbjct: 98 K----SCRSWPDVYRDYVEVTAGKNIVAYNAKFDRRIITQTCRAFNLTMKKRKWYCLMLA 153 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDMLRH 181 + G+ + L A V P + HSA GD T Sbjct: 154 F-----SELVGRTRYGDYKWHKLSTAAWVFDVPPNDDAHSAYGDCETTLAVAKEFLQ 205 >UniRef50_Q3JDE1 Exonuclease n=4 Tax=Gammaproteobacteria RepID=Q3JDE1_NITOC Length = 205 Score = 105 bits (263), Expect = 7e-22, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 15/184 (8%) Query: 1 MAKQLIVVDLETTGLDYDTA--LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 + IV+D ETTGL + V +G+ V E V +A I+ Sbjct: 12 LPDDYIVLDTETTGLPDENGLPDIVTLGITVVSNREIAESVEF-KTRPQKRISEEAQSIH 70 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + W ++ ++L+ N +FD I+ + + + + Sbjct: 71 GITNKQAAA----FDSFDSQWQQISEYLKHQLIVIHNASFDWPILLDHVLRHGLAMPEIQ 126 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-----VNRHSAIGDAAATA 173 +A LD + + LGV H A D+ A Sbjct: 127 GVFCSQKAAI---PWAQAMDLPCSHRGPSLDTLTKALGVEDLRVKEDGLHGAKIDSRQLA 183 Query: 174 FCFD 177 Sbjct: 184 QVVQ 187 >UniRef50_B0PH29 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH29_9FIRM Length = 866 Score = 105 bits (263), Expect = 7e-22, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 17/167 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVD--TGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++V D+E+TG D T V++ + + GE++ F + + A ++G+ Sbjct: 511 RVVVFDVESTGADVYTDDIVQIAAVRLSPGGGEAVRFERFLCPSRPVGASE---RVHGFS 567 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L A + D+ +G G N FD TI ++ +V Sbjct: 568 DAFLAENGGAP---CAALEDFLDFSKGCVLVGHNVMFDLTITSQNLARAG------SVQT 618 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + + L + + L V+ LG H+A+ D Sbjct: 619 LSNVWYDTLDI---SRRYMKDLPNHKLSTVSAALGAAHDPSHNAMDD 662 >UniRef50_Q15YI0 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15YI0_PSEA6 Length = 224 Score = 105 bits (263), Expect = 8e-22, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 10/184 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +DLE T LD + + +G + + + V A+ ++ I+G Sbjct: 28 PFLCIDLELTSLDLNDTKILSIGWVEGKGKQISLQSCYYQVISTTASLNQSPVIHGLTAD 87 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + Q +A ++ + + + D T++ ++P + Sbjct: 88 HIAQG----QPLRIALEALKQFASSHVWVFHCTHLDMTVLNGVFKKLNIPLPTVVTLDTL 143 Query: 124 HHRLADLAAYAAGKLNIDPTEL-EGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 Y K P L R +P V H+A+ DA AT Sbjct: 144 R-----FGLYQLTKNLRPPPPNAVVLPVCRARYNLPAVPAHNALDDAMATLELLFAQIQK 198 Query: 183 AAAH 186 A Sbjct: 199 FAPK 202 >UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3XEM3_9RHOB Length = 459 Score = 105 bits (263), Expect = 8e-22, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 16/198 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYY 61 + DLETTG+ + P++ + D E + P+A+ + Sbjct: 2 DFVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNIRCRLAPHILPSPQALVVTRVT 61 Query: 62 ERGLYR-EALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTV 119 L + + + E + + G N FD ++ + ++ + Sbjct: 62 PDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQ-NLSPNIYAT 120 Query: 120 GRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGDA 169 + R L A A + LD +A G N H A+GD Sbjct: 121 QFNGNTRFDILPAVYAAYVRHPGLLVWPTDDTGRRSFKLDRLAPANGFNAHNAHDALGDV 180 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L T + L Sbjct: 181 EATIHI-ARLIATRSPAL 197 >UniRef50_Q7S9B7 RNA exonuclease 4 n=1 Tax=Neurospora crassa RepID=REXO4_NEUCR Length = 406 Score = 105 bits (262), Expect = 8e-22, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 50/179 (27%), Gaps = 28/179 (15%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G A +++ + V A ++G Sbjct: 215 KYLSIDCEMVGTGPSGATSVLARCSIVDFHGHQIYDS----YVRPTAFVTDWRTHVSGIS 270 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 +R + V L+G G + D ++ Sbjct: 271 KRHMASAR----SFESVQATVAALLKGRILVGHDVKHDLEVL---------------GFE 311 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVP-VVNRHSAIGDAAATAFCFDM 178 H + D A Y+ + L +A+ LG+ +HS++ DA F Sbjct: 312 HPHRDIRDTAKYSGFRK-YGHGPKPSLRVLAKEVLGIEIHQGQHSSVEDARVAMLLFRK 369 >UniRef50_Q1J224 Exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J224_DEIGD Length = 188 Score = 105 bits (262), Expect = 8e-22, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 8/183 (4%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEING 59 + + +I VD ET G D + VGL+ + + H+ V + +AM +NG Sbjct: 10 LTQPIIFVDTETGGRDPARHPLLTVGLVTLTPQGEVTRPLHLRVRHEHYEVEEEAMAVNG 69 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + A ++ A A + G N A+D + F V Sbjct: 70 IDLATHHATAQAPEEVAEAVRAYARAVGRVMLGGHNLAYDLGFLRWLLPDLKSIFRRGRV 129 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + A K+ LD +A+ G+ H A+ DA TA+ + L Sbjct: 130 DTKLTAQFLLHAGILPRKVGTP------LDQLAKYFGL-AYQAHDALEDARVTAWVYAEL 182 Query: 180 RHT 182 Sbjct: 183 LRL 185 >UniRef50_Q7PQ12 AGAP005050-PA n=1 Tax=Anopheles gambiae RepID=Q7PQ12_ANOGA Length = 223 Score = 105 bits (262), Expect = 8e-22, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 48/185 (25%), Gaps = 27/185 (14%) Query: 6 IVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D E G+ D V ++N + V+ EI+G Sbjct: 50 IALDCEMVGIGPDGKEHMLARVSIVNEQGDVIVD----CYVKPQETVTDYRTEISGIRPE 105 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + ++ G G D ++ + Y+ Sbjct: 106 HV-NKGVDFKTIRELVRQLIH---GKILVGHALKNDLMVLNLKHPKYN------------ 149 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATAFCFDMLRH 181 + D + Y L ++A H ++ DA A + + Sbjct: 150 ---IRDTSRYRPIAKKAGSFGTPSLKSIAYVFLREDIQDGSHCSVEDARAAMKIYMLFEK 206 Query: 182 TAAAH 186 Sbjct: 207 EWEKS 211 >UniRef50_UPI0001C34DC4 sporulation inhibitor KapD n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34DC4 Length = 347 Score = 105 bits (262), Expect = 9e-22, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 57/186 (30%), Gaps = 21/186 (11%) Query: 5 LIVVDLETT----GLDYDTAL----PVEVGLLNVDTGESLYFVPHITVEQL--AAADPKA 54 IV+DLE G + +E+G + +D + V K Sbjct: 4 YIVLDLEWNQSSGGREASIDRLPFEIIEIGAVKLDENLRIVSEFSRLVRPQVYRTLHYKI 63 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 E+ L RE Q+ A E DW + + + D T + R V + M Sbjct: 64 SEVTHLTAEQLEREG---QKFETAVKEFFDWCGNDCRFCTWGSMDLTELQRNMVYHGMEL 120 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATA 173 + L L T+ E LD +G+ H A+ DA T Sbjct: 121 P-------FQKPLYYFDLQKIYSLIQGNTKRESLDTAVLEMGIEEERPFHRALDDAWYTG 173 Query: 174 FCFDML 179 + Sbjct: 174 LVMGKM 179 >UniRef50_A4RTZ6 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RTZ6_OSTLU Length = 183 Score = 105 bits (262), Expect = 9e-22, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 11/186 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++ +D E G+ D + V+ ++ H+ ++G + Sbjct: 4 VLALDCEMVGVGADGKRSILARASIVNEDGNVIMDAHVL--PTERVTDYRTAVSGVRAKD 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L ++ + LRG G + D ++ P ++H Sbjct: 62 LTAAN-GAVAFKKVQAQMSELLRGRILVGHSLKNDMRVL-----MLDHPKRDTRDTSLYH 115 Query: 125 HRLADLAAYAAGKLNIDPTELEG-LDAVA-ERLGVPVV-NRHSAIGDAAATAFCFDMLRH 181 L L +A + LG+ + HS++ DA AT + Sbjct: 116 PLTRPLRPEERCVPGAPRGRGCRALRDLARQHLGLEIQKGEHSSVDDARATLALYKKFAK 175 Query: 182 TAAAHL 187 + L Sbjct: 176 RWESAL 181 >UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Enterobacteriaceae RepID=A4W6Y1_ENT38 Length = 223 Score = 105 bits (262), Expect = 9e-22, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 52/178 (29%), Gaps = 32/178 (17%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 V+D ETTGL+ VE+ +++ G + V+ A +AM I+ E + Sbjct: 4 VIDTETTGLEGGPETVVELASVDIVDG-VICNPMSDLVKPGVAIGFEAMAIHHITEDMVE 62 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + G + + N FD + ++ Sbjct: 63 GA----PLLSEVIGRYL---GADAYVAHNAKFDKS-------------------KLPQID 96 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-----RHSAIGDAAATAFCFDML 179 + + + + + LG+ H A+ D TA + Sbjct: 97 APWICTAKLARSLLPEHKSHSNQYLRYSLGLKPEVPEGLYAHRALYDCYVTAELLLYM 154 >UniRef50_O64348 Gp41 n=3 Tax=root RepID=O64348_BPN15 Length = 304 Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 53/188 (28%), Gaps = 20/188 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V+D ETTGL + + + V+ P+ EIN Sbjct: 17 LKSDYVVIDTETTGLGEYAEI-----IEIAIINMRGEVLLDTLVKPTKPIPPEVTEINHI 71 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR----------VTY 110 + + +V + + + N FD+ ++ + Sbjct: 72 TNEMVASA----PAWCDVFPKVLAIISKHKWLAWNSGFDARMLEQTCLNTIFLNKNAYYV 127 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 + S + + + D Y + + L A R GV + H A+ D Sbjct: 128 TAMVSRIHTSHIDAKAVYDTW-YGEYDAKHQAFKRQSLTIAAARHGVLLEGAHRALADCK 186 Query: 171 ATAFCFDM 178 Sbjct: 187 MVLAVLQK 194 >UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZN4_HALNC Length = 495 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 60/197 (30%), Gaps = 16/197 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHIT---VEQLAAADPKAMEINGYY 61 + D ETTG D P++ L + P + P+A+ + G Sbjct: 3 FLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGIL 62 Query: 62 ERGLY-REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L E + A ++ FD+ ++ ++ Sbjct: 63 PQTLASSGGRPEAEFAALIHAEMMQPGTCAVGFNSLRFDAELLRFMFWR-NLRDPYAHEW 121 Query: 121 RVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGDAA 170 + + R L A A +L L+A+ + + N H A+GD Sbjct: 122 KSGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKVNVIAHANAHDALGDVE 181 Query: 171 ATAFCFDMLRHTAAAHL 187 AT F L + L Sbjct: 182 ATLA-FARLMRAQSPKL 197 >UniRef50_C6X5Z0 DNA polymerase III alpha subunit n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X5Z0_FLAB3 Length = 1567 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 52/192 (27%), Gaps = 17/192 (8%) Query: 5 LIVVDLETTGLDYDTA----------LPVEVGLLNVDTGESLYFVPHITVEQLA-AADPK 53 ++ D ETTGL + V++ D +L ++ Sbjct: 18 YLIFDTETTGLPKNYNAPLTDSDNWPRMVQIAWQLHDRDGNLLENQDYIIKPDGYDIPFN 77 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSM 112 A I+G + + E E + L+ G N FD I + S+ Sbjct: 78 ASRIHGISTKMAHAEGRD---LREVLIEFGEVLKKAEVVAGHNIDFDYKIAGAEYHRQSL 134 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPVVNRHSAIGDAAA 171 + L G + L+ + H+A D A Sbjct: 135 DNILEKIPSADTMEL-GTDYCKLGGGKNGRYKSPKLEELYTTLFNERFDEAHNAAADVNA 193 Query: 172 TAFCFDMLRHTA 183 TA F + Sbjct: 194 TAQIFFEMMRLR 205 >UniRef50_Q6A708 Putative DNA polymerase III epsilon subunit (Exonuclease) n=1 Tax=Propionibacterium acnes RepID=Q6A708_PROAC Length = 236 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 52/192 (27%), Gaps = 28/192 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VD ET +V ++ V G+ + + + + ++G Sbjct: 66 EPSFVAVDFETA-NRMGGVSACQVAMVKVCDGQIVDRLNTLIRPPKGWDSFEFTYLHGIS 124 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFD---STIVARQRVTYSMPFSPLT 118 + V ++ G T N AFD + T ++P Sbjct: 125 AADVADA----PSWTNIADTVSHFVDGVTVYAHNAAFDSRVWRQLDEHFGTTTLPAPFF- 179 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER----LGVPVVNRHSAIGDAAATAF 174 +Y + I L V + N H A DA A A Sbjct: 180 ------------CSYRTAQRLIPGLPNYKLPTVLHACAPNYQL---NHHRADSDAEACAL 224 Query: 175 CFDMLRHTAAAH 186 L+ A A Sbjct: 225 IVCELQRRAQAS 236 >UniRef50_A8QYU9 DNA polymerase III subunit epsilon n=3 Tax=Legionellaceae RepID=A8QYU9_9GAMM Length = 306 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 27/179 (15%) Query: 7 VVDLETTGLDYDTALPVEVGLLNV----DTGESLYFVPHITVE-QLAAADPKAMEINGYY 61 ++DLET G+D +E+G+L+ + G + + P+ +I G Sbjct: 47 IIDLETMGMDATQDEIIEIGMLSFSFSNEDGILGIKHTYNELNAPGKPIPPEITKITGIR 106 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + E + N FD + L + Sbjct: 107 NEDVIGKTINWNFVLQVLKE------SHLIICHNAGFDRNFLE------------LQTPQ 148 Query: 122 VWHHRLADL---AAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ L E LD + +LG + H AI D AT Sbjct: 149 DIQKQIITLPFGCTIKDIDWKERDYESSKLDYLNWKLGY-FYDGHRAINDCWATLNLLL 206 >UniRef50_Q5A3Q0 RNA exonuclease 4 n=3 Tax=Candida RepID=REXO4_CANAL Length = 285 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 49/188 (26%), Gaps = 28/188 (14%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G+ D + ++N L V ++G Sbjct: 115 KYVAIDCEFVGIGKDGEESALARISIINYYGVVLLD----TYVRPQERVTDWRTWVSGIQ 170 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A + + + G D I+ Sbjct: 171 SYHMQDAI----DFKTAQLKTMELINNKILVGHAVNNDLDIL---------------FLS 211 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVV-NRHSAIGDAAATAFCFDML 179 + D + + + L + + V + +HS++ DA AT F + Sbjct: 212 HPKSMIRDTCKFPKFREIAGG-KSPSLKKLIKHFIQVDIQIGQHSSVEDARATMLLFRLF 270 Query: 180 RHTAAAHL 187 + + Sbjct: 271 KREIEQSM 278 >UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=EX1_BUCAI Length = 413 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 49/199 (24%), Gaps = 15/199 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEIN 58 + D ET G+ P + + D ++ + DP ++ I Sbjct: 8 TPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 67 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + + E + ++ +N FD I Sbjct: 68 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFD-PYEW 126 Query: 119 VGRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGD 168 + + R L A L + + + +N H+A+ D Sbjct: 127 SWKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSD 186 Query: 169 AAATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 187 VYATIEI-AKLVKKKQPRL 204 >UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae RepID=Q2P315_XANOM Length = 481 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 52/199 (26%), Gaps = 13/199 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEI 57 M + DLET G D + + D + + P A + Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM-PFSP 116 + RE +TE + E + T ++ FD V P+ Sbjct: 61 TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLN--------IDPTELEGLDAVAERLGVPVVNRHSAIGD 168 G L D+ D L+ +A V + H A+ D Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 180 Query: 169 AAATAFCFDMLRHTAAAHL 187 AT + L Sbjct: 181 VYATIGMARKFQQ-HQPKL 198 >UniRef50_Q5TYH8 AGAP012826-PA n=2 Tax=Culicidae RepID=Q5TYH8_ANOGA Length = 207 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 48/185 (25%), Gaps = 27/185 (14%) Query: 6 IVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D E G+ D V ++N + V+ EI+G Sbjct: 34 IALDCEMVGIGPDGKEHMLARVSIVNEQGDVIVD----CYVKPQETVTDYRTEISGIRPE 89 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + ++ G G D ++ + Y+ Sbjct: 90 HV-NKGVDFKTIRELVRQLIH---GKILVGHALKNDLMVLNLKHPKYN------------ 133 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP--VVNRHSAIGDAAATAFCFDMLRH 181 + D + Y L ++A H ++ DA A + + Sbjct: 134 ---IRDTSRYRPIAKKAGSFGTPSLKSIAYVFLREDIQDGSHCSVEDARAAMKIYMLFEK 190 Query: 182 TAAAH 186 Sbjct: 191 EWEKS 195 >UniRef50_Q8KQK8 DNA polymerase III epsilon subunit (Fragment) n=3 Tax=Candidatus Tremblaya princeps RepID=Q8KQK8_TREPR Length = 212 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 51/164 (31%), Gaps = 14/164 (8%) Query: 15 LDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYREALTEQQ 74 L EVG + + G H + A ++G + L T+ Sbjct: 1 LSPRYHRLAEVGCVEIACGRITGNYFHAYINPRQRMTRGAQAVHGLRDEFLA----TQPA 56 Query: 75 TAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYA 134 + + +L +T G N +FD + T R H + + A Sbjct: 57 FSAIAQRLLFFLCQSTLVGHNLSFDLNFLDAGLATAGFMP----AARYCHGVIDTMCHLA 112 Query: 135 AGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCF 176 LDA + LGV + RH A+ DA A F Sbjct: 113 Q----RGSRRRFSLDACCDMLGVRRGDRARHGALVDAVLLAEAF 152 >UniRef50_Q12PE3 Ribonuclease T n=157 Tax=Gammaproteobacteria RepID=RNT_SHEDO Length = 226 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 24/194 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGL--LNVDTGESL----YFVPHITVEQLAAADPKAMEING 59 +V+D+ET G + +T +E+ + L ++ L HI + A +P+A+ NG Sbjct: 20 VVIDVETAGFNANTDALLEIAVTLLKMNDDGILVLDKTVHFHIEPFEGANLEPEALAFNG 79 Query: 60 YYERG-LYREALTEQQTAVAWGEVQD-----WLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 L ++ + V+ + N AFD + V + + Sbjct: 80 IDPTNPLRGAVSEKEAFLEIFKTVKKGQKASDCHRSIIVAHNAAFDLSFVNKAIERNDLK 139 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAA 171 SP + D A A + L + G+ N HSA+ D Sbjct: 140 RSPFHPFASF-----DTATLAGLSIGHTV-----LAKACKMAGIDFDNKEAHSALYDTER 189 Query: 172 TAFCFDMLRHTAAA 185 TA F + + A Sbjct: 190 TAELFCHIVNRWKA 203 >UniRef50_B4RRS4 Putative DNA polymerase, exonuclease activity n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RRS4_ALTMD Length = 226 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +DLE T L +G + V A ++ I+G + Sbjct: 33 FAAIDLELTSLQPSKTQITSLGYVEGKGMRISLASSGYHVINTRADLGQSPVIHGLTQDI 92 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L R ++ A + L+ N N D + R ++ + Sbjct: 93 LERG----EELDEALRHLLPLLKRNILIFHNAKLDLMALDRAFKQNNLQTVEV------- 141 Query: 125 HRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D A +LN P L +RL +P H+A+ DA AT F Sbjct: 142 -IYIDTLQLALYQLNKQHQVLPNNSATLTVCRQRLDLPAFPAHNALDDALATLQLFFAQL 200 Query: 181 HTAA 184 + Sbjct: 201 NELG 204 >UniRef50_C2S1I6 DnaQ family exonuclease/DinG family helicase n=3 Tax=Bacillales RepID=C2S1I6_BACCE Length = 99 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 1 MAKQLIVVDLETTGLDYD--TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M+K+ +VVDLETTG + ++ + V+ GE L + P E+ Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEI-FSSFINPKREIPPFITELT 59 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTI 102 G E + + V + L+G F N FD Sbjct: 60 GIDESMVKQA----PLFEDVAPMVVELLQGAAFVAHNVHFDWNF 99 >UniRef50_Q4E271 Exonuclease, putative n=1 Tax=Trypanosoma cruzi RepID=Q4E271_TRYCR Length = 223 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 50/227 (22%), Gaps = 54/227 (23%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLY-------FVPHITVEQLAAADPKAMEIN 58 I VDLETTG V +G + + + TV + +A ++ Sbjct: 4 ICVDLETTGFSAQRDDVVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAEAVH 63 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRG------------------------------ 88 G L E + + Sbjct: 64 GLSFEMLRDAPPLEDVISDFAAFLIQLDGNLPQSGQTEENYRAKPGDLSAKKRCTAATTA 123 Query: 89 ------NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDP 142 N FD++ + R + + + Sbjct: 124 GCVLTLPPVIAHNANFDASFLQRAVSRAGWRVVWDEYAPLT-----CTQSMFRALYSHQA 178 Query: 143 TELEGLDAVAERLGVPVVNR---HSAIGDAAATAFCFDMLRHTAAAH 186 + L + GV R H A+ DA F L + Sbjct: 179 AD---LSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRLAEKWPSR 222 >UniRef50_D2B9E4 DNA-directed DNA polymerase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B9E4_STRRD Length = 189 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 47/155 (30%), Gaps = 22/155 (14%) Query: 8 VDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 VD+ETTG E+ L+++D + H V+ A+ ++G E + Sbjct: 2 VDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSLVDPRR--GTGAVHVHGITEAMVE 59 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 EV + G N +FD + V H Sbjct: 60 GA----PVIEEVLDEVWQRIAGRVLVAHNVSFDLRFLK--------------VLPGSHWL 101 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 L I + L A +R G+P N Sbjct: 102 TEALCTQQLAPDLIPGGKW-TLGACCQRAGIPFSN 135 >UniRef50_D0U233 Putative exonuclease n=1 Tax=Clavibacter phage CMP1 RepID=D0U233_9CAUD Length = 236 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 17/193 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++V D ET+G+D + V + +D ++ ++ A +I+G Sbjct: 5 DKIMVFDTETSGVDVENDRIVTAFIGLMDPDGTMTEFHEWLIDPGIPIPEGASDIHGITT 64 Query: 63 RGLYREALTEQQTAVAWGEV-----QDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSP 116 + E + A E+ N +D TI+ R+ + + Sbjct: 65 EKAHAEGR--KDIDKALMEIATKLDYASRWNYPVVIMNAPYDLTILDRELRRHVGIKNFR 122 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGDAAATAFC 175 + + KL L +A GVPV N H A D Sbjct: 123 APNVVLDTFVID-------KKLYTFRKGSRKLVDLARIYGVPVEENAHDAQADCRMAGRV 175 Query: 176 -FDMLRHTAAAHL 187 L+H A L Sbjct: 176 TLKQLQHEWLAPL 188 >UniRef50_Q8EDA7 Exonuclease n=1 Tax=Shewanella oneidensis RepID=Q8EDA7_SHEON Length = 181 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 14/164 (8%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYR 67 +DLE TGLD + +GL+ ++ G + Q+ + ++ I+G L Sbjct: 1 MDLEMTGLDPFKDQILSIGLVPIENGAIPLSHAQQKLVQIRGSVGQSAIIHGI----LDN 56 Query: 68 EALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP---FSPLTVGRVWH 124 A + RG + D + + +T + + Sbjct: 57 HLTQAVSIEEAMAWFMEQTRGRVLVAHHSPLDCRFLQQDILTIYHQAVLLPAIDTLVLEK 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 RL + L A ER G+P+ HSA+ D Sbjct: 117 QRLLREHSVLK-------EGSLRLGACRERYGLPIYGAHSALTD 153 >UniRef50_B2K016 Exonuclease RNase T and DNA polymerase III n=2 Tax=Yersinia pseudotuberculosis RepID=B2K016_YERPB Length = 233 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 60/183 (32%), Gaps = 16/183 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++D ETTGLD + A VE+ +++ L ++ L I+G Sbjct: 57 NGNYLILDTETTGLD-NAAEIVEISIIDCMGNVLLD----TLIKPLGFIPSDVEAIHGIT 111 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + ++ F N FD+ ++ + + + Sbjct: 112 NKMVDNA----PHWCDIHEKFIEIIKSRNFVAYNSRFDTRLIYQSAEFSGVTTGADDIAS 167 Query: 122 VWHHRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCF 176 + + YA D + + L A A ++ V H A+ D T Sbjct: 168 ASGN--CAMLEYARFHGQWDSRQSDFKWQTLIAAAGQMNVITEGASHRALSDCKTTLGVI 225 Query: 177 DML 179 + Sbjct: 226 KAM 228 >UniRef50_B4SAW0 Exonuclease RNase T and DNA polymerase III n=2 Tax=Chlorobium/Pelodictyon group RepID=B4SAW0_PELPB Length = 190 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 19/191 (9%) Query: 5 LIVVDLETTGLD-----YDTA-----LPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPK 53 + D ETTGL T V++ L+ D + F ++ Sbjct: 2 YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAIIKPEGFVIPSS 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSM 112 A++I+G + R L + + + N +FD IV + + M Sbjct: 62 AVQIHGISTQ---RALLEGKPLGQVLQSFYELVADAEVLVAHNISFDEKIVGSELIRAGM 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVVNRHSAIGDAAA 171 P S + ++ + L + + G H+A D A Sbjct: 119 PNSLPSKRKICTME---STTDFCAIKGPYGNKWPKLSELYFQLFGTVFNEAHNAASDIQA 175 Query: 172 TAFCFDMLRHT 182 TA CF L+ Sbjct: 176 TAKCFWELKRR 186 >UniRef50_UPI00005842D2 PREDICTED: hypothetical protein n=2 Tax=Strongylocentrotus purpuratus RepID=UPI00005842D2 Length = 268 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 47/181 (25%), Gaps = 10/181 (5%) Query: 5 LIVVDLETTGLDYDT---ALPVEVGLLNVDTGE-SLYFVPHITVEQLAA-ADPKAMEING 59 +V+D E T LD + +E +L V H VE + G Sbjct: 79 FLVLDFEATCLDNERIEPQEVIEFPVLKVSGKTFETEATFHQYVEPQVHGVGEFCTRLTG 138 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + A W+ F + P Sbjct: 139 ITPDMVKGQ----PTFADTLKLFHVWMEKEGLVDPEVKFIFVTCGDWDLKTMFPSQCAHF 194 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSA-IGDAAATAFCFDM 178 +H + +G+ + ERL +P V RH + I D A Sbjct: 195 ELPYHSYFRRWLNIKKAFATVTSHYPKGMMQMLERLNIPHVGRHHSGIDDCRNIANILQA 254 Query: 179 L 179 L Sbjct: 255 L 255 >UniRef50_UPI000180BB0F PREDICTED: similar to MGC131088 protein n=1 Tax=Ciona intestinalis RepID=UPI000180BB0F Length = 320 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 28/186 (15%) Query: 4 QLIVVDLETTGL-DYDTALPV-EVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++ +D E G+ D + V L+N V+ ++G Sbjct: 142 RIVAMDCEMVGVGDDGRDSVLARVSLVNQFGKCIYDKH----VKAREDVTDYRTFVSGIR 197 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + V EV + + G G D ++ Sbjct: 198 PADLENA----EDFEVVQKEVAEIIEGRILVGHALWNDFQVL---------------FLN 238 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDML 179 + D A Y + GL + ++ LGV V HS++ DA A + M Sbjct: 239 HPKKCIRDTAKYKPFRNLTAG-RSPGLRILCKKILGVDVQKGEHSSVQDAQAAMRLYTMH 297 Query: 180 RHTAAA 185 + A Sbjct: 298 KKHWEA 303 >UniRef50_UPI000192786A PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI000192786A Length = 287 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 51/198 (25%), Gaps = 28/198 (14%) Query: 5 LIVVDLETTGLDYD----TALPVEVGLLNVDTGE---SLYFVPHITVEQLAAADPKAMEI 57 +V+D E T + + +E + V T F + + Sbjct: 97 YVVIDFEATCDEPNPSGFQHEIIEFPAVLVKTSTLEIVSEFHSYCRPVINPVLSEFCKSL 156 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF------AGSNPAFDS-TIVARQRVTY 110 G + + + V WL+ ++ +D + Q T Sbjct: 157 TGITQVQVE----SSSVFEVVLQRFDKWLKQQVMPTETFCIATDGPWDLDRFLKNQCKTL 212 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDA 169 ++ H N ++ + + LG+ R H I DA Sbjct: 213 NIQIP---------HYFHRWVNIRKHFYNYYKINQANVELMLQHLGMEFEGRPHRGIDDA 263 Query: 170 AATAFCFDMLRHTAAAHL 187 A L A L Sbjct: 264 RNIARILIQLIRDGADPL 281 >UniRef50_Q854A2 Gp164 n=1 Tax=Mycobacterium phage Omega RepID=Q854A2_9CAUD Length = 178 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 108/187 (57%), Gaps = 13/187 (6%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M++Q+IVVD ET GL + A +E+ +NV+TGE VP +T QL++ +P+A+ IN + Sbjct: 1 MSRQIIVVDTETGGLGPN-APVLEIAAVNVETGEEFRVVPFVTAAQLSSCEPEALAINRF 59 Query: 61 YERGL-YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 YER + + A+ ++ L GN FAGSNPAFD+ ++A+ Sbjct: 60 YERRVFADMLEDAEGNKNAFDWLRSMLDGNVFAGSNPAFDAPLIAKLLN----------- 108 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 G WHHR L +YAAG L + EL GL+ V E LGV + HSA+GDA ATA CF +L Sbjct: 109 GEPWHHRKLALESYAAGVLGLPLDELPGLNKVCEILGVENEDPHSALGDARATAECFRIL 168 Query: 180 RHTAAAH 186 R A + Sbjct: 169 RGMAEQN 175 >UniRef50_UPI000186E2F9 RNA exonuclease, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E2F9 Length = 262 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 28/187 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ +D E + + + L+N V+ + +G E Sbjct: 88 KVVALDCEMVSDLNNQDMLARISLVNFKLECIYDK----YVKPQSKVGDYRTRFSGIREE 143 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L V EV+D L G D ++ Sbjct: 144 NLMNG----ADFEVVRKEVKDLLYNRILVGHALGNDFKVLK---------------FGHH 184 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNRHSAIGDAAATAFCFDMLR 180 + D + Y K I+ + L +A+ + H +I DA + R Sbjct: 185 KQLIRDTSKYEPFK-EINDLKSPPLKKLAKMFLNENIQ-EGEHDSIEDAKTAMKLYKKFR 242 Query: 181 HTAAAHL 187 L Sbjct: 243 KEWEISL 249 >UniRef50_UPI0001AEBC71 putative DNA polymerase, exonuclease activity n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEBC71 Length = 229 Score = 103 bits (258), Expect = 3e-21, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 16/188 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L VDLE T LD T +G ++ G+ V +A ++ I+G Sbjct: 32 PLASVDLELTSLDPVTTQITSIGYVSGSAGKITLSSSGYHVINTSADLGQSPVIHGLTLD 91 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + A A + L+ + N D + +P + Sbjct: 92 ILQQG----EGLADAINSLLPLLKTHVLIFHNARLDLMALDSAFKRCGLPQMEV------ 141 Query: 124 HHRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 D A +LN P+ L +RL +P H+A+ DA AT F Sbjct: 142 --LYLDTLQLALYQLNKQHQVLPSNSATLTVCRQRLDLPAFPEHNALDDALATMQLFYAQ 199 Query: 180 RHTAAAHL 187 + L Sbjct: 200 LNELGITL 207 >UniRef50_Q9H9L3 Interferon-stimulated 20 kDa exonuclease-like 2 n=19 Tax=Eutheria RepID=I20L2_HUMAN Length = 353 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 55/194 (28%), Gaps = 29/194 (14%) Query: 1 MAKQLIVVDLETTGLDYDTA--LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 + ++++ +D E G ++N + + + Sbjct: 175 LPRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDE----YILPPCHIVDYRTRWS 230 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G ++ + +A G++ L G G D + + S+ Sbjct: 231 GIRKQHMVNAT----PFKIARGQILKILTGKIVVGHAIHNDFKAL-QYFHPKSLTRDTSH 285 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNR-HSAIGDAAATAF 174 + + K + L + ++L + V HS++ DA AT Sbjct: 286 IPPLNR------------KADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATME 333 Query: 175 CFDMLRH-TAAAHL 187 + L HL Sbjct: 334 LY-KLVEVEWEEHL 346 >UniRef50_Q5QUI3 3'-5' exonuclease n=1 Tax=Idiomarina loihiensis RepID=Q5QUI3_IDILO Length = 215 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 17/184 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAAD-PKAMEIN 58 + + + +D+E+TGLD + + +++ L + + ++ I+ Sbjct: 23 QSLRYVALDIESTGLDPKKHQILSIAWMSIHPPVMHLGNAQYHVFAHGQELELGQSPTIH 82 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + +Q A+ + D + D + Y +PF PL Sbjct: 83 GLTRQDFLHSSEPKQTFAMLSRALND----AVLVCHHKGMDWRFLKHIEAQYGIPFKPLA 138 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEG----LDAVAERLGVPVVNRHSAIGDAAATAF 174 + LA + G L A +R +P + H A+ D A A Sbjct: 139 I-------FDTLAFEKHKLERNPHQPIYGGQLALSACRKRYNLPDYHAHHALTDTVACAE 191 Query: 175 CFDM 178 F Sbjct: 192 LFLA 195 >UniRef50_Q0F2C4 DNA polymerase III subunit epsilon n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2C4_9PROT Length = 310 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 61/187 (32%), Gaps = 27/187 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD----TGES--LYFVPHITVEQLAAADPKAMEING 59 +V+D ETTGLD +E+G + +G + + A ++ G Sbjct: 40 LVIDTETTGLDTTADTIIELGFVAFSYDAGSGRIYEVLHNYDGFEDPGAPLSDVVKQLTG 99 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + L + + + + N AFD ++ R+ PL Sbjct: 100 ISDAMVAGQRLDDAEIETWLK------KADLLIAHNAAFDRPMLERRL--------PLAA 145 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + W D+ A LD +A RLG H A+ DA AT Sbjct: 146 EKNWACTFCDINWDAE------GIASRKLDYIACRLGYFFDG-HRAVVDAQATLHLLTRA 198 Query: 180 RHTAAAH 186 + Sbjct: 199 MPISGRA 205 >UniRef50_B0UVN4 Exonuclease RNase T and DNA polymerase III n=2 Tax=Histophilus somni RepID=B0UVN4_HAES2 Length = 236 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 53/180 (29%), Gaps = 15/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYER 63 +V+D ETTGL+ + V + +D H V + + IN + Sbjct: 52 YLVIDFETTGLNSMMDNILSVATVPIDNLTLDISKAWHQFVAEQQEIKEDTVIINHILPQ 111 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYSMPFSPLTVGRV 122 L + ++ + ++G + + Y++ PL Sbjct: 112 MLNGA----ETLDDTMNKLFELMQGRILIAHGSTIEKRFILHYLNVRYNLSQFPLF---- 163 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D L D L + + +P H+A+ DA + F Sbjct: 164 ----WLDTLKIERS-LCQDNENNYQLSHIRNKYNLPEYIGHNALIDAISAGELFLAQLEK 218 >UniRef50_C7Z8F6 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z8F6_NECH7 Length = 320 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 26/178 (14%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E G+ V +++ + V+ ++G Sbjct: 133 KYIAIDCEMVGVGPGGYESALARVSIVDFHGRQVYDS----YVKPKEKVTNWRTAVSGIS 188 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + ++ L+ G + D + + Sbjct: 189 PKSMR----FARDFEEVQADIDKLLKDRILIGHDLKHDLEAL---------------ILS 229 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGDAAATAFCFDM 178 + D A + K + + + LGV + HS+I DA AT F Sbjct: 230 HPARDIRDTAKFPGFKKYGNGRKPALRLLAQQLLGVEIQEGAHSSIEDARATMLLFRK 287 >UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=A4ADV7_9GAMM Length = 482 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 52/201 (25%), Gaps = 19/201 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEIN 58 ++ D ET G+D P + L D +L + + P A I Sbjct: 4 SETFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDACLIT 63 Query: 59 GYYERGLYREALTEQQT-AVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSP 116 G + E + E Q + E G N FD T+ ++ Sbjct: 64 GITPQTALAEGVVEAQFMSTILDEFMKPGTCA--VGYNSLRFDDTVTRATLYR-NLRDPY 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAI 166 R + L+ + + G+ H A+ Sbjct: 121 AREYGDGRSRWDLIDVVRTAYALRPEGLNWPTRDDGLPSFRLEDLCKANGLEQGQAHDAL 180 Query: 167 GDAAATAFCFDMLRHTAAAHL 187 D AT ++ L Sbjct: 181 VDVKATIALARAIKDK-QPRL 200 >UniRef50_B9FK06 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9FK06_ORYSJ Length = 252 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 44/180 (24%), Gaps = 16/180 (8%) Query: 3 KQLIVVDLETT--GLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++ D+ETT D +E G + V + + TV + + Sbjct: 4 PEMVFFDVETTAASADEGQRSVLEFGAIVVCPRRLVEVDSYHTVIRPGDMSAVSKRFA-- 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTV 119 + + + + L G +AG N FD + Sbjct: 62 --AMVDVDVASAPSFDQVAERIFGVLDGRVWAGHNIQRFDCHRIREAFAAIGRAAPEPVA 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + +A G+ H ++ DA Sbjct: 120 IVDSLNV--------LAHDFGRRAGDLKMATLASYFGIG-KQSHRSLDDARMNLEVLKRC 170 >UniRef50_Q9VUC3 CG6833 n=1 Tax=Drosophila melanogaster RepID=Q9VUC3_DROME Length = 290 Score = 103 bits (257), Expect = 4e-21, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 59/189 (31%), Gaps = 27/189 (14%) Query: 3 KQLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++ +D E G+ ++T + V ++N L V+ ++G Sbjct: 115 NRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLLDK----YVKPRKEVTDYRTSVSGI 170 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + A EV + G G D ++ + Sbjct: 171 RPQDIANG----EDFAAVQNEVMKLIHGRILVGHGLRNDLAVL-------GIRHPFHD-- 217 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDM 178 + D + Y I T L + + LG + H+++ DA A ++ Sbjct: 218 ------IRDTSHYKPLCKLISNTHTPSLKRLTKAVLGQEIQTGEHNSVEDARAAMGIYNR 271 Query: 179 LRHTAAAHL 187 + +L Sbjct: 272 VAVDWEKYL 280 >UniRef50_UPI0001C31300 Exonuclease RNase T and DNA polymerase III n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31300 Length = 259 Score = 103 bits (257), Expect = 4e-21, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 49/164 (29%), Gaps = 4/164 (2%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++L D+ETTG+D + V +++ V+ A ++G Sbjct: 2 RRLAAFDIETTGIDPQSDRIVT-AAVSLAGDARPTVDHDWLVDPGVEIPAGATAVHGITT 60 Query: 63 RGLYREALTEQQTAVAWGEVQ--DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + V L N FD T + R+ + + VG Sbjct: 61 DHARAEGRASAEAVEEITAVLAAQLLDHVPVIAFNARFDLTCLDREARRHGVVPLVDRVG 120 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + D + + L AV E V + H+ Sbjct: 121 GPDGLIVVDPFVLDK-QFDRYRRGKRTLGAVCEHYRVRLDAAHT 163 >UniRef50_B9JNT5 Polymerase epsilon subunit protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JNT5_AGRRK Length = 340 Score = 103 bits (257), Expect = 4e-21, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 28/179 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV---DTGES--LYFVPHITVEQLAAADPKAMEINGY 60 +++D ETTGL++ +E+GL+ D G + V + P+ + G Sbjct: 89 VILDTETTGLNHRNDEIIEIGLVAFTFDDFGHIGDVIGVYGGLQQPGTPIPPEITRLTGI 148 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + +V+ + N FD FS + Sbjct: 149 TDEMVEGQMID-------MQQVRRMVAPADLVIAHNAGFDRPFCEA--------FSNVFA 193 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + W ++++ A E L + + G H AI D A D Sbjct: 194 TKAWACSVSEIDWNAR------GFEGTKLGYLIGQAGYFHEG-HRAIDDCFALLEVLDR 245 >UniRef50_A7HLA2 DNA polymerase III, epsilon subunit n=3 Tax=Thermotogaceae RepID=A7HLA2_FERNB Length = 188 Score = 102 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 54/182 (29%), Gaps = 18/182 (9%) Query: 5 LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYE 62 VD+ETTG+D +E+ ++ + G+ + + V A ++ Sbjct: 7 YCCVDIETTGIDPSMGDRIIEIAIIPIYKGKIVKEWIYTSLVNPKVNIQAYAQSVHKISN 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + V+ + + N FD T + + Sbjct: 67 SDIENA----PELDEIISVVRKYSKDTIMVFHNAKFDLTFLDYAAKEVG-------QLPL 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + L A L+++A+ + + H A DA TA F Sbjct: 116 DVYYIDTLDISKAVY-----GRRRKLESLAQEMKISHKVTHRAYDDAFVTANVFIRFFDM 170 Query: 183 AA 184 Sbjct: 171 LG 172 >UniRef50_B8DPI8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DPI8_DESVM Length = 267 Score = 102 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 60/214 (28%), Gaps = 31/214 (14%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYER 63 + +D E TGL+ + VG + + + P+ + ++G Sbjct: 25 FVSLDCEMTGLNPARDDLLAVGAVVLRGMRLDLSATFRGLLRPACPVRPEGVPVHGILPG 84 Query: 64 GLYREALTEQQTAVAWGEVQDW----------LRGNTFAGSNPAFDSTIVARQRVTYSMP 113 Q A + G D +A R +P Sbjct: 85 EAAHGDEAAAQLARLDAWLAGCAAVPGAGNGAEAPVVLLGWCLGLDEAFLAAGRKRAGLP 144 Query: 114 ---FSPLTVGRVWHHRLADLAAYAAGKLNIDP-----------------TELEGLDAVAE 153 V ++ H A A +G+ + P + L AVA Sbjct: 145 ARTHPRCDVLDLFRHVRARGVAAPSGQGAMPPSGASPLPSTHAALADIPLKDADLYAVAR 204 Query: 154 RLGVPVVNRHSAIGDAAATAFCFDMLRHTAAAHL 187 LGV V H A+GDA A F L L Sbjct: 205 ALGVDVHGAHDALGDACMCAQVFQRLVPLLERGL 238 >UniRef50_A8SRC5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SRC5_9FIRM Length = 227 Score = 102 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 49/184 (26%), Gaps = 19/184 (10%) Query: 4 QLIVVDLETTGLDYD--------TALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKA 54 + + VD E +D + + +E+G + +D + V+ + Sbjct: 10 RYVFVDFEMNLIDSEHKQEKKICKSEIIEIGAVKLDDEYNEIDSFKSYVKPAYGNMASRI 69 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 +++ G + L T A G +W + D + + Sbjct: 70 IKLTGITDEMLE----TAPSYEDAVGRFIEWCADADVIYAWSENDLRQLRGETRLKQYTH 125 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATA 173 L I + L LG H A+ DA TA Sbjct: 126 PELERVFAKWQDFQ-----KEYARMIGTSRRISLSDAVFYLGENFQGAEHDALWDARNTA 180 Query: 174 FCFD 177 F Sbjct: 181 EVFK 184 >UniRef50_O94375 RNA exonuclease 4 n=1 Tax=Schizosaccharomyces pombe RepID=REXO4_SCHPO Length = 260 Score = 102 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 26/181 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I +D E G+ D ++ V ++N V ++G Sbjct: 92 KYIAMDCEMVGVADDMSVLARVSIVNYHGHVVYD----TYVRPKEKVTDWRTWVSGVKSF 147 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + EV L G D ++ + Sbjct: 148 HMRDA----PSFEKVQAEVAKILDNRVLVGHAVHNDLKVL---------------LLSHP 188 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVV-NRHSAIGDAAATAFCFDMLRH 181 + D + ++ + GL +AE LG + +HS++ DA AT + ++ Sbjct: 189 RRMIRDTSRFSGYRKLAKG-RTPGLKKLAEVILGRDIQSGQHSSVQDAQATMELYKKVKK 247 Query: 182 T 182 Sbjct: 248 E 248 >UniRef50_B4QJK2 GD14476 n=11 Tax=Drosophila RepID=B4QJK2_DROSI Length = 290 Score = 102 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 27/190 (14%) Query: 2 AKQLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 + + + +D E G+ ++ + V ++N L V+ ++G Sbjct: 114 SNRYLAMDCEMVGVGHNGQDDMLARVSIVNRVGQVLLDK----YVKPRMEVTDYRTSVSG 169 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + A EV L G G D ++ Sbjct: 170 IRPQDIANG----EDFATVQNEVVKLLHGRILVGHALGNDLAVL---------------S 210 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVV-NRHSAIGDAAATAFCFD 177 R H + D + Y I + L + LG + H+++ DA A ++ Sbjct: 211 IRHPFHDIRDTSRYKPLCKLISNSHTPSLKRLTMAVLGQEIQTGEHNSVEDARAAMGIYN 270 Query: 178 MLRHTAAAHL 187 + +L Sbjct: 271 RVAADWEKYL 280 >UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochmannia RepID=Q7VQX2_BLOFL Length = 501 Score = 102 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 48/198 (24%), Gaps = 15/198 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEING 59 ++ D ET GL+ P + + V+ + +P+++ I G Sbjct: 8 PTFLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNPESVLITG 67 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L E Q A + + +N +FD Sbjct: 68 ITPYDTLSNGLLEPQFAYQISQKFNVPNTCILGYNNISFDDEFSRNIFYRNFYD-PYKWS 126 Query: 120 GRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGDA 169 + R L A L + + +N H A D Sbjct: 127 YHHGNSRWDLLPVLRAFYSLYPTGIQWPINSKKKVSFRLTDLTLANSIQHLNAHDATSDI 186 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 187 FATLEIM-KLIKYTQPQL 203 >UniRef50_B9L7I4 Exonuclease family n=2 Tax=Nautiliaceae RepID=B9L7I4_NAUPA Length = 271 Score = 102 bits (256), Expect = 5e-21, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 15/179 (8%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 V D ETT + + ++ D + + A +A E++ + + Sbjct: 106 VFDTETTDI---YGYIISYAVVIQDMQSMDTEEIYDFLNPKAKISEEAYEVHKIKQEDIE 162 Query: 67 REALTEQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + A E + + G N +D ++ R+ + + + Sbjct: 163 HK----PTFAEKKDEFLQIFDNLDMVVGHNVLYDFGVLKRELERAEHFPNIIDIP----- 213 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D Y+A + ++ ++ L+ G N H A+ D T F+ L Sbjct: 214 -IFDTMYYSADVVVLEKKKMPRLEECVAFFFGKQNANYHDALEDVKMTLKVFNRLLQEK 271 >UniRef50_Q63ZS9 LOC494737 protein n=5 Tax=Euteleostomi RepID=Q63ZS9_XENLA Length = 264 Score = 102 bits (256), Expect = 5e-21, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 46/188 (24%), Gaps = 27/188 (14%) Query: 6 IVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G ++N + +G ++ Sbjct: 60 VAIDCEMVGTGPGGRIGEVARCSIVNYRGDVVYDK----YINPELPIKNYRTRWSGITKQ 115 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A E+ L+ G D + + + Sbjct: 116 NLKNAI----PFKTAQKEILKILKDKRVVGHALHNDFKALK---------YFHPSSQTRD 162 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVV---NRHSAIGDAAATAFCFDML 179 ++ L A + L +A LG + N H ++ DA A + ++ Sbjct: 163 TSKIPLLKEIA----GLPSNNGASLKTLAFNLLGKRIQVGSNGHCSVEDAQACLELYKLV 218 Query: 180 RHTAAAHL 187 L Sbjct: 219 EDQWEETL 226 >UniRef50_Q4D4F6 Exonuclease, putative n=1 Tax=Trypanosoma cruzi RepID=Q4D4F6_TRYCR Length = 316 Score = 102 bits (256), Expect = 5e-21, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 50/224 (22%), Gaps = 54/224 (24%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLY-------FVPHITVEQLAAADPKAMEIN 58 I VDLETTG V +G + + + TV + +A ++ Sbjct: 97 ICVDLETTGFSAQRDDIVSIGAVELRWDGTTLQQWVLGARSFFRTVRPSKPSSHQAEAVH 156 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRG------------------------------ 88 G L L E + + Sbjct: 157 GLSFEMLRDAPLLEDVISDFAAFLIQLDGNLPQSGQTEENHRAKPGDLSAKKRCTAATTA 216 Query: 89 ------NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDP 142 N FD++ + R + + + Sbjct: 217 GCVLTLPPVIAHNANFDASFLQRAVSGAGWRVVWDEYAPLT-----CTQSMFRALYSHQA 271 Query: 143 TELEGLDAVAERLGVPVVN---RHSAIGDAAATAFCFDMLRHTA 183 + L + GV RH A+ DA F L Sbjct: 272 AD---LSRACQFCGVDTSGRDERHDALHDAQLCGRLFLRLAEKW 312 >UniRef50_B5K1P1 Exonuclease n=4 Tax=Octadecabacter antarcticus RepID=B5K1P1_9RHOB Length = 206 Score = 102 bits (255), Expect = 5e-21, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 16/175 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I +D+ET G ++GL V ++ + ++ + E++G Sbjct: 20 RFIALDVETAGKTIGG--ICQIGLCFVSNTGAV-QTYSVLIDPEEPFEQFNTELHGISAD 76 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + + D L + + FD + Y +P + Sbjct: 77 TVAGAGI----FPMVYAALFDLLNTHNLIQHST-FDEKALTSDCARYGLPM-------IT 124 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 H + + GL + + LG+ + H A DA A+A Sbjct: 125 SHWTNSVTVARQAWPALKGAGGHGLANLKKHLGLEF-HHHDAGEDARASATVILR 178 >UniRef50_D0ZEQ2 Orf81 bacteriophage 186 n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEQ2_EDWTE Length = 199 Score = 102 bits (255), Expect = 5e-21, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 11/176 (6%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 ++D ETTG+ + A V +++ D H ++ + I+G + Sbjct: 32 ILDTETTGV-KENAEIVSAAIIDQDGTVL----FHSLIKPVNPITEITTAIHGITNEMVA 86 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + A E+ L N FD ++A+ + +P + Sbjct: 87 EK----PTWAEVHDEIARILNTAPLVVYNAQFDMRMMAQSAAKHGLPPIVVNTEVNCAME 142 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDMLRH 181 Y + L + V N HSA+GD T + Sbjct: 143 A-YAHFYGQWNEEHQSYRWQSLSMAMFQQDVDDDNIPHSALGDVNRTLALMRSMVK 197 >UniRef50_UPI0000DB6C62 PREDICTED: similar to XPMC2 prevents mitotic catastrophe 2 homolog n=1 Tax=Apis mellifera RepID=UPI0000DB6C62 Length = 278 Score = 102 bits (255), Expect = 6e-21, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 27/185 (14%) Query: 6 IVVDLETTGLDYDTALPV-EVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I +D E G+ T + + ++N V+ +++G Sbjct: 114 IAIDCEMVGIGDGTESMLARISIVNRHGFCVYDK----YVKPREPVQDYRTKVSGIRPHN 169 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L ++ + EV + LRG G +D ++ Sbjct: 170 LQNG----EEFEIVQKEVAEILRGRILVGHALKYDLDVL---------------YLSHPR 210 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVV-NRHSAIGDAAATAFCFDMLRHT 182 L D + + + L +A E LG + HS+I DA A + + ++ Sbjct: 211 KHLRDTSRFKTFRQLSRGN-TPSLKKLAHELLGKEIQTGEHSSIEDARAAMQLYMLYKNK 269 Query: 183 AAAHL 187 + L Sbjct: 270 WESEL 274 >UniRef50_A4HVE4 Mitochondrial DNA polymerase I protein B, putative n=3 Tax=Leishmania RepID=A4HVE4_LEIIN Length = 1430 Score = 102 bits (255), Expect = 6e-21, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 51/199 (25%), Gaps = 30/199 (15%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++ D+ETTGL+ T VEV + D H V + P+ + I+ Sbjct: 764 RIVFFDIETTGLNPSTDAIVEVAM--FDP--IENSTFHTLVNPQRSITPRTVGIHHITNA 819 Query: 64 GLYREALTEQQTAVAWGEV----------QDWLRGNTFAGSNP-AFDSTIVARQRVTYSM 112 + V + + G N + D ++ R ++ Sbjct: 820 MVRDA----PTVDVVAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRALECHAP 875 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPT----------ELEGLDAVAERLGVPVVN- 161 + L + L + L V Sbjct: 876 ECQLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALNVRPEGD 935 Query: 162 RHSAIGDAAATAFCFDMLR 180 H A D A + + Sbjct: 936 LHRADTDTKALWYVLVNIL 954 >UniRef50_D1ZK43 Whole genome shotgun sequence assembly, scaffold_47 n=1 Tax=Sordaria macrospora RepID=D1ZK43_SORMA Length = 416 Score = 102 bits (255), Expect = 6e-21, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 54/179 (30%), Gaps = 28/179 (15%) Query: 4 QLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G ++ L++ + V+ A ++G Sbjct: 223 KYVAIDCEMVGTGPSGLTSVLARCSLVDFHGNQIYDS----YVKPTAFVTDWRTHVSGIS 278 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + + V L+G G + D ++ + Sbjct: 279 KKHMA----FARSFVSVQATVAALLKGRILVGHDVKHDLEVL-------GLEHP------ 321 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDM 178 H + D A Y+ + L +A+ L V + +HS++ DA F Sbjct: 322 --HRDIRDTAKYSGFRK-YGHGPKPSLKVLAKEVLAVEIQSGQHSSVEDARVAMLLFRK 377 >UniRef50_A5Z7C9 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7C9_9FIRM Length = 334 Score = 102 bits (255), Expect = 6e-21, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 22/188 (11%) Query: 4 QLIVVDLETTGLDYDTA--------LPVEVGLLNVDTGESLYFVPHITVEQLA---AADP 52 IV+DLE Y + +E+G + V V + Sbjct: 3 DYIVMDLEWNQNPYGKSHCHTDLTFEIIEIGAVRVSDDRKTIVDSFQQVIKPRVFKKLHY 62 Query: 53 KAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM 112 K EI + E L + +W + + + D T + + Y++ Sbjct: 63 KIQEITHFTEEELNDGK----DFRKVIRDFLEWCGDDYIFCTWGSMDLTELQKNMKHYNL 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAA 171 + DL + + + + L + E L + + H A+ DA Sbjct: 119 E-----RVLDFPLFYVDLQKMFSLRYDDGHMKR-NLTSAVEYLNIQEEHEFHRALSDAYY 172 Query: 172 TAFCFDML 179 TA + Sbjct: 173 TARILQSM 180 >UniRef50_C5WTF0 Putative uncharacterized protein Sb01g029940 n=3 Tax=Andropogoneae RepID=C5WTF0_SORBI Length = 435 Score = 102 bits (255), Expect = 6e-21, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 21/182 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV----EQLAAADPKAMEIN 58 ++++ +D+ET+ +E G + V + + + T+ + AA + Sbjct: 18 EEIVFLDVETS-TPPRV--LLEFGAVVVCSRRLVDVSSYATLVRPADPDAAVPDPTARCS 74 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPL 117 G + +V D L G +AG N FDS I+ P Sbjct: 75 GITRDAVADA----PPFRDVADKVYDVLHGRVWAGHNIVKFDSVIIRDAFAEIGRPPPEP 130 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + D + L ++A G+ RH ++ D Sbjct: 131 KG-------MVDTLPL-LTQWFGPRAGDMKLASLANYFGLG-KQRHRSLDDVKMNIDVLK 181 Query: 178 ML 179 Sbjct: 182 NC 183 >UniRef50_A4TY99 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases n=2 Tax=Proteobacteria RepID=A4TY99_9PROT Length = 173 Score = 102 bits (255), Expect = 7e-21, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 47/180 (26%), Gaps = 21/180 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D ET D + L V G + + A I+G Sbjct: 2 DFIALDFET--ADNGRDSACSLALAVVKNGTV--AETWHRLIRPPRASQMFTHIHGITWD 57 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + W E++D + A N FD ++A + Sbjct: 58 MVKDQ----PDFGHFWPEIRDLIDAAPFLAAHNAPFDKGVLAECCRAHGHGAPLTPF--- 110 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + L V L P+ N H A+ DA A A Sbjct: 111 -------VCTVRVARDTW-NLRPTKLPDVCRFLAQPL-NHHDALSDAVACAEIMLAALRD 161 >UniRef50_UPI0001925D67 PREDICTED: similar to Interferon-stimulated 20 kDa exonuclease-like 1 n=1 Tax=Hydra magnipapillata RepID=UPI0001925D67 Length = 207 Score = 102 bits (254), Expect = 7e-21, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 56/178 (31%), Gaps = 23/178 (12%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++ +D E G+ + +++ ++ + + +G Sbjct: 23 PSEVVSLDCEMVGISNNQDALGRCSIVDYFGNVLYDK----YIKPESTITDYRTKWSGIK 78 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 +++ A GE+ + ++ G + FD ++ R + + Sbjct: 79 PHHMHQAI----SFKKARGEIYNIIKNKVIVGHSLHFDFKVLKLNRNNFKIRD------- 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVV-NRHSAIGDAAATAFCFD 177 + N ++ L +A+ LG + H +I D+ AT + Sbjct: 128 ------ISTSTLLRQLANFPSNQIVSLKRLAQVILGRDIQSGSHCSIEDSIATMDLYK 179 >UniRef50_A9VVI2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Bacillus weihenstephanensis KBAB4 RepID=A9VVI2_BACWK Length = 271 Score = 102 bits (254), Expect = 7e-21, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 53/183 (28%), Gaps = 22/183 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGYYER 63 V DLETTGLDY VE+ + D + L + + + ++ + Sbjct: 14 FTVFDLETTGLDYKNEQVVEIAAIRTDLEQELGRMHILVKLNEGKKLPDFLVDNTDLRDY 73 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + ++ + FD + + + P L + Sbjct: 74 MLVNGMVEH----QALINLMAFMGNSIVVAHYAPFDFAYLFKALIA---PELFLCTRSIE 126 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D + L AER GV + H A+ D AT Sbjct: 127 RLLTPD--------------KSASLAPTAERRGVKLEGAHRAMNDIEATIGVLKSQLSEI 172 Query: 184 AAH 186 Sbjct: 173 KER 175 >UniRef50_C8NL35 DNA polymerase III, epsilon subunit n=20 Tax=Corynebacterium RepID=C8NL35_COREF Length = 252 Score = 102 bits (254), Expect = 7e-21, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 50/186 (26%), Gaps = 16/186 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ DLETT + A V ++ + + + + A ++G Sbjct: 34 PANMLSFDLETTAANPFEARIVTSAMVTITNAGATPLE--LLADPGVEIPEGATAVHGIT 91 Query: 62 ERGLYREALTEQQ-TAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 ++ A +Q+ W N +D T++ R +++ Sbjct: 92 TEYAREHGQPHEEVLAETIRRIQEGWGNNQALIVYNAPYDLTVLRRLSGDFTIDGLVYDP 151 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 V + L + V + N H A DA A A Sbjct: 152 YTVDR------------IKDPYRKGKRTLADLCAHYEVQLGNAHEATSDALAAARIAWKQ 199 Query: 180 RHTAAA 185 Sbjct: 200 ARIWPE 205 >UniRef50_A5E1X8 RNA exonuclease 4 n=1 Tax=Lodderomyces elongisporus RepID=A5E1X8_LODEL Length = 279 Score = 102 bits (254), Expect = 7e-21, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 49/189 (25%), Gaps = 30/189 (15%) Query: 4 QLIVVDLETTGL--DYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + +D E G+ D + V ++N + V A I+G Sbjct: 112 KYLAMDCEFVGIGKDGEHNALARVSIVNFFGHVIMDE----YVRPKARVTDFRTSISGVA 167 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L +V ++ G A D + Sbjct: 168 PWHLKDAT----PFDDVQKKVSALIKDRILVGHAIANDLECLQ---------------LS 208 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNRHSAIGDAAATAFCFDM 178 L D + + + L + + + HS++ DA AT F Sbjct: 209 HPRRMLRDTVSCSEYRKVAGG-RSPSLRKLMQHFFKINIQ-DGEHSSVEDARATMLLFRR 266 Query: 179 LRHTAAAHL 187 + ++ Sbjct: 267 AKDDIERNM 275 >UniRef50_A6CY65 DNA polymerase III, epsilon subunit n=1 Tax=Vibrio shilonii AK1 RepID=A6CY65_9VIBR Length = 197 Score = 102 bits (254), Expect = 8e-21, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 9/176 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDT-GESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+D ETTGLD +T + +G + + ++ + +E + IN Sbjct: 9 EYLVLDFETTGLDANTNTILSLGWVEIANFTVNVASAKQLFIESPNEVKAETAVINHIMP 68 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L A ++ + ++ V + + + Sbjct: 69 EMLQDGI----SLDSAMTQLFQAAKNKILIAHGSMIEAAFVDEYLTQ---KYGVSDLPVM 121 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 W LA + A +N D L +R G+P N H A+ DA ATA F Sbjct: 122 WLDTLAIEKSMALA-VNKDAEIDVRLSETRKRYGLPEYNGHEALIDAIATAELFLA 176 >UniRef50_Q9GZR2 RNA exonuclease 4 n=22 Tax=Eukaryota RepID=REXO4_HUMAN Length = 422 Score = 102 bits (254), Expect = 8e-21, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 28/183 (15%) Query: 6 IVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G+ V ++N V+ ++G Sbjct: 244 LALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDK----YVKPTEPVTDYRTAVSGIRPE 299 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ V EV + L+G G D ++ Sbjct: 300 NLKQG----EELEVVQKEVAEMLKGRILVGHALHNDLKVL---------------FLDHP 340 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNR-HSAIGDAAATAFCFDMLRH 181 ++ D Y K + + L ++E+ LG+ V H +I DA A + M++ Sbjct: 341 KKKIRDTQKYKPFKSQV-KSGRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKK 399 Query: 182 TAA 184 Sbjct: 400 EWE 402 >UniRef50_A1RGY9 Exonuclease, RNase T and DNA polymerase III n=20 Tax=root RepID=A1RGY9_SHESW Length = 301 Score = 102 bits (254), Expect = 8e-21, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 28/192 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNV----DTGESL--YFVPHITVEQLAAADPKAM 55 + ++++D ETTGL D +E+G++ V + V + + Sbjct: 49 ERPMVLLDTETTGLSADDESIIELGMVKVLYSPSAKRIVSIVDVISLYEDPGKPIPELIT 108 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 E+ G + + + + + A N FD ++ Sbjct: 109 ELTGITDDMVQGQHIDDSLVASWLS------DDPLVVAHNAQFDRPFFEKRFAALGHLSW 162 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + L E L+ + RLG H A D A A+ Sbjct: 163 ACSASGIDWKAL--------------GFESRKLEYLLLRLG-WFYEGHRAATDCFAMAWL 207 Query: 176 FDMLRHTAAAHL 187 F L + A+L Sbjct: 208 F-HLLPESVANL 218 >UniRef50_C9PFC2 DNA polymerase III epsilon subunit n=2 Tax=Vibrio RepID=C9PFC2_VIBFU Length = 238 Score = 102 bits (254), Expect = 9e-21, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 51/182 (28%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 L+ D ET+G+D + +G + + + + I V + IN Sbjct: 52 DLLAFDFETSGVDAGHDQILSLGWVGMTLDQIDVAASEEIFVRHPEFVTADSAVINHITP 111 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A + L G + VA+ Sbjct: 112 QVLAHGV----TLDEAMDRLFGQLAGKIALVHGACIERAFVAQYMR-------ERFAIEH 160 Query: 123 WHHRLADLAAYAAGKLNIDPTE---LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + D TE L+ V R +P N HSA DA ATA F Sbjct: 161 FPCVWVDTLQIEKQMTYAGKTECGTSFQLNDVRTRYALPQYNAHSAAIDALATAELFTAQ 220 Query: 180 RH 181 Sbjct: 221 MK 222 >UniRef50_C4JR78 Predicted protein n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JR78_UNCRE Length = 462 Score = 101 bits (253), Expect = 9e-21, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 26/184 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I +D E G PV + ++ TGE + V L + I G E+ + Sbjct: 224 IALDCEMVGT-VAGDYPVSLSAVDYLTGEVILNR---LVRPLVKVTDWRVRITGVTEKTI 279 Query: 66 YREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 ++ + A E+ ++ G + A D ++ + H Sbjct: 280 AQDRAALEGWEAARAELWAFMNPQTILIGHSLANDLKVL-----------------GMVH 322 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVV---NRHSAIGDAAATAFCFDMLR 180 R+ D + + GL + E LG+ + HS++ DA AT Sbjct: 323 TRIVDSEILTKKAVGPTCKRVWGLKTLCETFLGIRIQAGKKGHSSLEDALATREIVLWCT 382 Query: 181 HTAA 184 Sbjct: 383 KNPE 386 >UniRef50_B1WBN4 REX4, RNA exonuclease 4 homolog (S. cerevisiae) n=4 Tax=Eutheria RepID=B1WBN4_RAT Length = 409 Score = 101 bits (253), Expect = 9e-21, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 28/183 (15%) Query: 6 IVVDLETTGLDYDTALPV--EVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G+ + V ++N V+ ++G Sbjct: 231 LALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDK----YVKPTEPVTDYRTAVSGIRPE 286 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ V EV L+G G D ++ Sbjct: 287 NLKQG----EEFEVVKKEVAAMLKGRILVGHALRNDLKVL---------------FLEHP 327 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNR-HSAIGDAAATAFCFDMLRH 181 ++ D + + + L ++E+ LG+ V H ++ DA A + M++ Sbjct: 328 KKKIRDTQKFKPFRSLVKSAR-PSLKQLSEKILGLRVQQAEHCSVQDAQAAMRLYIMVKR 386 Query: 182 TAA 184 Sbjct: 387 KWE 389 >UniRef50_D1HJW3 Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HJW3_VITVI Length = 303 Score = 101 bits (253), Expect = 9e-21, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 48/184 (26%), Gaps = 19/184 (10%) Query: 2 AKQLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI-- 57 A +++ DLETT + +E G + V + + + T+ + A+ Sbjct: 12 AAEIVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPGDLSAVALRSGR 71 Query: 58 -NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFS 115 +G + ++ L G +AG N FD + Sbjct: 72 SDGITREVVAGA----PGFEEVADQIFSILNGRVWAGHNIQRFDCVRIKEAFAEIGRAAP 127 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 L + + +A G+ H ++ D Sbjct: 128 VPVGMIDSLGVLTE--------KFGRRAGNMKMATLATYFGLGQQK-HRSLDDVRMNLEV 178 Query: 176 FDML 179 Sbjct: 179 LKHC 182 >UniRef50_A7B402 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B402_RUMGN Length = 300 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 52/176 (29%), Gaps = 15/176 (8%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IV DLETTG++ P+ + ++++ + F + E + A I+G + Sbjct: 135 IVYDLETTGVNPWKDEPLSMCIMDLQGK--VIFEHYFRPEHTKSWPD-AAAIHGITPEKV 191 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 E+ + N FD + + + + V Sbjct: 192 ANESPMSFYRDQIQKIF---DASDILITYNGINFDDSFLEAA----GIKLPEVMQFDVMR 244 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L A G H A D AT +C+ + Sbjct: 245 EYAWLIHDWDEYHQGW---RWWRLIDCAAYYGYEFS-AHDAAEDVKATLYCYKKMV 296 >UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellular organisms RepID=Q21WQ6_RHOFD Length = 485 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 49/197 (24%), Gaps = 15/197 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKAMEINGY 60 + D ET G + P + + D ++ + DP+A I G Sbjct: 9 TFLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDPQACLITGI 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + E Q A + + FD I + Sbjct: 69 TPQLCLEKGIPEYQFAAQIEQAFSLPGTVGVGYNTIRFDDEITRFMFWRNLID-PYAREW 127 Query: 121 RVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGDAA 170 + R L L ++ G+ H A+ D Sbjct: 128 QNDCGRWDLLDVVRTAYALRPDGMEWPLNAEGKPSFKLTDLSAANGLLHEAAHDALSDVR 187 Query: 171 ATAFCFDMLRHTAAAHL 187 AT L TA L Sbjct: 188 ATIAL-ARLIKTAQPKL 203 >UniRef50_UPI000186E025 3'''' histone mRNA exonuclease, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E025 Length = 386 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 51/193 (26%), Gaps = 30/193 (15%) Query: 5 LIVVDLETTGLDYDTAL--PVEVGLLNVDTGE---SLYFVPHITVEQLAAADPKAMEING 59 +V+D E T + +E + V++ + F + ME+ G Sbjct: 105 YVVIDFEATCDNKKIDRQEIIEFPAVLVNSKKQKIEDCFRMYCKPRINPKLSQYCMELTG 164 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTF--------AGSNPAFDS-TIVARQRVTY 110 + + + +WL+ + ++ +D + Q Sbjct: 165 ITQEQVDNA----ETFDKVLSHYNNWLKKHNLGTKNKRYAVVTDGNWDMSKFLVSQCHYS 220 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEG--LDAVAERLGVPVVNR-HSAIG 167 ++P N L + E L + + R H + Sbjct: 221 NVPIPKWGK---------TWVNLKKTFKNFYQKGENRICLKTMLEMLNMEFIGRPHCGLD 271 Query: 168 DAAATAFCFDMLR 180 DA A + Sbjct: 272 DAKNIARILLKMI 284 >UniRef50_A6GP03 Exonuclease n=1 Tax=Limnobacter sp. MED105 RepID=A6GP03_9BURK Length = 244 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 59/200 (29%), Gaps = 29/200 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGL--LNVDTGES----LYFVPHITVEQLAAADPKA- 54 + +V+D+E++GL+ + V + D L + ++Q Sbjct: 34 PDRWVVLDVESSGLNPKKDRLISVAATAIVFDAQRRPRISLTDTFEVVIKQPPEIVDMIE 93 Query: 55 --------MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ 106 + I+G + VA E ++ + + FD ++ + Sbjct: 94 FEAIDKNNILIHGIG----IGAQQKGVKAEVALSEFLRYVGHSPLIAFHSWFDEILINKA 149 Query: 107 RVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAI 166 +GR H DL + LD +R G+ RH A Sbjct: 150 LRKV--------LGRTTHRHWLDLEHL--AAVLHKENHQLPLDVWMQRYGIECEQRHQAA 199 Query: 167 GDAAATAFCFDMLRHTAAAH 186 D ATA L Sbjct: 200 ADVLATAQLLMKLWPMLQKR 219 >UniRef50_C7YKG5 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YKG5_NECH7 Length = 720 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 47/180 (26%), Gaps = 30/180 (16%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++++ +D E + + ++N L V+ + +G E Sbjct: 333 REVLALDCEMCMTGENEFSLTRISIINWTGDVVLDE----LVKPDKPIVDYVTQFSGITE 388 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L T + E+ G + D+ + + Sbjct: 389 EMLAPVTTTLRDIQEKLLEIL--HPRTILVGHSLESDTKALQ-----------------I 429 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNR--HSAIGDAAATAFCFD 177 H + D + P + L +A++ + H +I DA Sbjct: 430 SHPFIVDTSIIFPHPRG-PPLKS-SLKWLAQKYLSKEIQKGGANGHDSIEDAKTCLDLVK 487 >UniRef50_Q6ML77 DNA polymerase III polC-type n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6ML77_BDEBA Length = 295 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 49/177 (27%), Gaps = 27/177 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV----DTGES--LYFVPHITVEQLAAADPKAMEING 59 ++D+ETTGL+ +E+G+ ++GE + + P+ + G Sbjct: 47 AILDVETTGLNQTEDTIIEIGIRQFLFNKNSGEVLAVTKSYSSFQDPGKPISPEIQALTG 106 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + E N FD + R Sbjct: 107 ITDEMVAGKQIDWTAVDALLNE------CQLIIAHNAKFDRPFIDR-------------- 146 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 ++ + + L+ + + H AI D A + Sbjct: 147 RSKTSPERVWACSFKQVEWSDKGFTSPKLE-LLNIYHGFFTDSHRAINDVDALLYLL 202 >UniRef50_Q5KJQ4 RNA exonuclease 4 n=3 Tax=Eukaryota RepID=REXO4_CRYNE Length = 408 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 50/186 (26%), Gaps = 28/186 (15%) Query: 5 LIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +D E G+ + V ++N L V+ I+G + Sbjct: 132 YLAIDCEMVGVGPNGMENTLARVSIVNYHGAVILD----TFVQPREPVTDYRTWISGVKQ 187 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L Q +V + L G D ++ Sbjct: 188 SDLLGA----PQFDEVNKQVANLLHDKILIGHAIDNDLKVLM---------------LTH 228 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVV-NRHSAIGDAAATAFCFDMLR 180 D Y + + GL ++E L GV + HS++ DA + + + Sbjct: 229 PGPLTRDTQKYKPLQEIAKN-KRPGLKKLSELLLGVQIQTGAHSSVVDARVAMALYRLHK 287 Query: 181 HTAAAH 186 Sbjct: 288 KEWERS 293 >UniRef50_D0JAY7 DNA polymerase III subunit alpha n=2 Tax=Blattabacterium RepID=D0JAY7_BLASB Length = 1434 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 18/191 (9%) Query: 5 LIVVDLETTGLDYDTA----------LPVEVGLLNVD-TGESLYFVPHITVEQLAAADPK 53 ++VD ETTGL V+ N D G+ + F I Sbjct: 2 YLIVDTETTGLPISYNFSITHTDNWPRIVQFSWQNHDILGDLIEFKNFIIKPDHYDIPFN 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSM 112 A +I+G + + + E + + G N FD ++ + + + Sbjct: 62 AFKIHGITNEKAEKYGVD---LSFVLCEFRKSLEKSQCLIGHNLEFDKKVIECEFLRKKI 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSAIGDAAA 171 S + + +Y N + L + ++ + N H A D A Sbjct: 119 EISFKKKKILDTKEI--SVSYCKLPGNRKKFKWPTLSELYQKLFEEKIPNLHDAANDVKA 176 Query: 172 TAFCFDMLRHT 182 TA CF L Sbjct: 177 TARCFLELLRI 187 >UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteriaceae RepID=EXOX_ECOL6 Length = 220 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 36/176 (20%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 ++D ET GL VE+ ++V G+ + + H V P+AM I+ E + Sbjct: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRITEAMVA 59 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + + + N +FD ++ Sbjct: 60 DK----PWIEDVIP---HYYGSEWYVAHNASFDRRVL-------------------PEMP 93 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAE--RLGVPVV---NRHSAIGDAAATAFCFD 177 + + + A+ + +L V + H A+ D TA Sbjct: 94 GEWICTMKLARRLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 >UniRef50_UPI0001B4C718 DNA polymerase III subunit epsilon n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C718 Length = 241 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 46/160 (28%), Gaps = 4/160 (2%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L D ETTG+D + V L+ SL V V A EI+G + Sbjct: 8 PLAAFDTETTGIDVEHDRIVSAALVVQRGAGSLPEVRRWLVSPGIPVPQAATEIHGLTDT 67 Query: 64 GLYREAL-TEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + RG N FD T++ R+ + + Sbjct: 68 HLQQHGRWPAPVMDEVARALAEQTARGTPVVVMNAPFDLTLLDRELKRHRNATLATYLSL 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 L L+ L + GV + Sbjct: 128 RSLSVLD--PRVLDKHLDRYRKGRRTLTDLCAHYGVELTG 165 >UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphaproteobacteria RepID=Q07NS2_RHOP5 Length = 490 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 53/195 (27%), Gaps = 13/195 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI--TVEQLAAADPKAMEINGYYE 62 + D ETTGL + V + D + + + P A+ N Sbjct: 3 FVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEVRSRLLPHVVPHPSALRTNRLSI 62 Query: 63 RGLYREA-LTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 L + + A + F G N FD ++ P + Sbjct: 63 ERLIDGTLPSHYEMVRAIQRTLLAWSPSIFVGYNSIRFDEEMLRHALFQTLHPAYLTSNN 122 Query: 121 RVWHHRLADL----AAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 L A + L + + LD +A + H A+ D AAT Sbjct: 123 GNCRADALGLIMAAATLSPACLVVPLGPEGRPIFRLDQLASVNDLKHDQAHDAMADVAAT 182 Query: 173 AFCFDMLRHTAAAHL 187 L A L Sbjct: 183 LDL-CRLVRERAPEL 196 >UniRef50_C5V7N5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7N5_9PROT Length = 234 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 58/175 (33%), Gaps = 13/175 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 + +VVD+ET+GL+ + +G + V G+ V Q + + ++G Sbjct: 41 RCVVVDVETSGLNLWEDRLISIGAVAVVNGKIELGDSFYIVLQQEIVSEKENILLHGIGG 100 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 +L+ + + FD T++ R Y +G Sbjct: 101 AAQAEGVPAADALLAF----LAFLQKDPLIAFHVTFDQTMIVRAISKY--------LGFS 148 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + +D+A LD + RH+A+ DA TA F Sbjct: 149 FKQPWSDMAYVMPALNPELAARFRSLDDWIAHFDIRNDARHNALADALVTAQLFQ 203 >UniRef50_Q6DEW6 RNA exonuclease 4 n=3 Tax=Euteleostomi RepID=REXO4_XENTR Length = 414 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 28/186 (15%) Query: 6 IVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G+ D V ++N+ V ++G Sbjct: 229 VAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDK----YVRPTERVTDYRTAVSGIRPD 284 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + EV + LRG T G D I+ Sbjct: 285 DIKNG----EAFKDVQAEVAEILRGRTLVGHAVHNDLKIL---------------FLDHP 325 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDMLRH 181 + D Y K + + L + E+ L V V H ++ DA A + M + Sbjct: 326 KKAIRDTQKYKPFKEKV-KSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKK 384 Query: 182 TAAAHL 187 A + Sbjct: 385 CWEAAI 390 >UniRef50_B6JWR3 RNA exonuclease n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JWR3_SCHJY Length = 278 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 26/185 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I +D E G+ D ++ V ++N V ++G Sbjct: 104 KYIAMDCEMVGVANDVSVLARVSIVNYHGRVVYD----TFVRPKERVLDWRTWVSGVKSH 159 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A V D L G G D + + Sbjct: 160 HLRDA----PSFEEAQKTVADILDGRVLVGHAVHHDLKAL---------------LLSHP 200 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDMLRH 181 + D + + + L + ++ LG + +HS++ DA AT + ++ Sbjct: 201 RRMIRDTSKFPGYRKLAKG-RTPSLKKLTQQLLGKEIQTGQHSSVQDAQATMELYKRVKA 259 Query: 182 TAAAH 186 H Sbjct: 260 EMDEH 264 >UniRef50_A6VT55 Exonuclease RNase T and DNA polymerase III n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VT55_MARMS Length = 220 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 8/165 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ET+GLD V G + + G V A ++ I+ + Sbjct: 27 DYLVLDIETSGLDPKQDHIVSFGWVCIHKGVIELDTARHIVLDSAQIGD-SVGIHMITDS 85 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ ++ ++ LR + + + T ++ +V + Sbjct: 86 DVQQQGKKQES---VLRYLRHLLRERVLVMHHAPMELGFLKHAWQTEAL--PSFSVSWLD 140 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + A + + D L A ER G+P H A+ D Sbjct: 141 TLAIERTKANRSQQPIQDGG--FRLGACRERYGLPDYQGHDALTD 183 >UniRef50_C8PWE0 Exonuclease, Ycg4D n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWE0_9GAMM Length = 217 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 53/176 (30%), Gaps = 14/176 (7%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + D ET G +E+ + D + + + P A +++G Y L Sbjct: 50 LFFDTETIG-GGREDQIIEIAFCDSDRHVIID----TLIYTDRTSSPGAFKVHGIYPHEL 104 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 + + + L+G T N FD ++ + + + + + + Sbjct: 105 ----IGKPTFIDIQPAIVQLLKGRTLYAYNANFDIRMMRQS--GHKLRLQQVGIKCLCKQ 158 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + Y+ L G+ N H A DA A + + Sbjct: 159 FADFIGQYSPY---FKANRYFSLSKACLHFGIEHSNAHRARPDALACVTVWQGMVK 211 >UniRef50_B9ZRI9 Ribonuclease T n=3 Tax=Gammaproteobacteria RepID=B9ZRI9_9GAMM Length = 228 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 70/203 (34%), Gaps = 29/203 (14%) Query: 1 MAKQL-----IVVDLETTGLDYDTALPVEVGLLNVDTGESL------YFVPHITVEQLAA 49 MA + +VVD+ET G D ++V + + E+ H+ + + Sbjct: 14 MANRFRGFLPVVVDVETGGFDCRRHALLQVAAVFLRRDENDHLVRDRTVSLHVRPYEGSE 73 Query: 50 ADPKAMEINGYYERGLYREALTEQQ-----TAVAWGEV-QDWLRGNTFAGSNPAFDSTIV 103 DPK++E+NG R A E Q + EV + + G N FD V Sbjct: 74 MDPKSLEVNGIDPYHPLRAAYPEDQAMGRLFSEVRREVKINHCKRAILVGHNAHFDLGFV 133 Query: 104 ARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER--LGVPVVN 161 + +P H + L + L T L A+ LG Sbjct: 134 HTAAERCGIKRNPF-------HPFSSLDTVSLAALAFGQTV---LARAADAAGLGWDAEA 183 Query: 162 RHSAIGDAAATAFCFDMLRHTAA 184 HSA DA TA F + + Sbjct: 184 AHSAAFDAEKTADIFCQIANRWQ 206 >UniRef50_D2QID7 Exonuclease RNase T and DNA polymerase III n=2 Tax=Flexibacteraceae RepID=D2QID7_9SPHI Length = 205 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 52/204 (25%), Gaps = 27/204 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA--ADPKAMEINGYY 61 +V+DLE TG + D +++G + D V + +I+ Sbjct: 2 PFLVLDLEMTGPEPDYNEIIQIGAVLFDDNWVERGQYLTNVYPENKDAFSSSSEKIHNLS 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGN-------------------TFAGSNPAFDSTI 102 L E+++W+ G + D Sbjct: 62 LAELEDA----PMIYDVLPEMEEWICTQLGLRVPKGQLDRTPYLRDLIICGQSVINDINF 117 Query: 103 VARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-N 161 + + V H + L A+A G Sbjct: 118 LKEAYRYEKQKWPYSRVLLDLHTLAYFTFRVLKA-NGRKVPDRLSLTAIASYFGFAREDG 176 Query: 162 RHSAIGDAAATAFCFDMLRHTAAA 185 H+A+ DA TA C + + Sbjct: 177 FHNALEDAVLTAKCLKEVFKLSEQ 200 >UniRef50_Q4V7K3 MGC115620 protein n=5 Tax=Tetrapoda RepID=Q4V7K3_XENLA Length = 369 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 47/188 (25%), Gaps = 27/188 (14%) Query: 6 IVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G + + ++N ++ + +G Sbjct: 196 VAIDCEMVGTGPNGRNSDLARCSIVNWFGDVMYDK----YIKPKSPVTDYRTRWSGIRRE 251 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L VA E+ L G G D + Sbjct: 252 HLVNAI----PFVVAQKEILKILNGKVVVGHAIHNDYKALNYFH-------PKEMTRDTS 300 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVV-NRHSAIGDAAATAFCFDML 179 L + K E L +A++L + HS++ DA T + ++ Sbjct: 301 KIPLLN------HKAGFPEKEAASLKRLAKQLLHKDIQTGRQGHSSVEDAKTTMELYRVI 354 Query: 180 RHTAAAHL 187 L Sbjct: 355 EVEWERKL 362 >UniRef50_C3Z6U1 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Z6U1_BRAFL Length = 222 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 58/196 (29%), Gaps = 20/196 (10%) Query: 5 LIVVDLETTGLDYDTA----LPVEVGLLNVDT---GESLYFVPHITVEQLAAADPKAMEI 57 VVD E T + A +E G + VD + F + E+ Sbjct: 10 YCVVDFEATCIKPRRADFRTEIIEFGAVIVDGSNFQMADEFHEFCRPVENPVLHQFCKEL 69 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA------FDSTIVARQRVTYS 111 G + + V + Q WL SN A FD + R + S Sbjct: 70 TGIQQDTVDSA----DPFPVVFDRFQKWLSNRGLIDSNFALVTDGIFDCNQIMRSQCEVS 125 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAA 170 P R + ++ + G + + LG+ + HSAI DA Sbjct: 126 QMSFPSFARRFSNIKIHYMQ--FMGIRLRRGQPTPRIPDMLRALGISQEGQLHSAISDAR 183 Query: 171 ATAFCFDMLRHTAAAH 186 + L A+ Sbjct: 184 NICRIMEALSRRLRAN 199 >UniRef50_A9CEN2 Polymerase epsilon subunit n=5 Tax=cellular organisms RepID=A9CEN2_AGRT5 Length = 326 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 62/187 (33%), Gaps = 28/187 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNV---DTGES--LYFVPHITVEQLAAADPKAMEINGY 60 +++D ETTGLD+ T +E+G++ D G + + + A + G Sbjct: 74 VILDTETTGLDHRTDEIIEIGVITFTFDDQGAIGDVTGIYGGLRQPGVAIPEDITRLTGI 133 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + +++ + + N FD FSP+ Sbjct: 134 TDEMVAGQSIDMMRLTSLIA------HADLIIAHNAGFDRPFCEA--------FSPIFRD 179 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + W ++++ + E L + + G H A+ D A + + Sbjct: 180 KAWACSVSEID------WRVRGFEGNKLGYLIGQSGYFHDG-HRAVDDCFALLEVLE--Q 230 Query: 181 HTAAAHL 187 + ++ Sbjct: 231 RRSGQNI 237 >UniRef50_A4AJM3 DNA polymerase III subunit epsilon n=4 Tax=Actinobacteria (class) RepID=A4AJM3_9ACTN Length = 232 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 9/163 (5%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLYR 67 DLETTG+D +T+ V + VD + + A I+G Sbjct: 10 FDLETTGVDVETSRIVSACIALVDASGVVISRWDWLADPGVEIPEGAAAIHGISTERARA 69 Query: 68 EALTEQ-QTAVAWGEVQDWLRGNT-FAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 E A ++ N +D +++ R+ YS+ + Sbjct: 70 EGRDAAIVVAEIVQTLKVTCALGIPLVVYNAPYDLSLLDRECRRYSIDGLREPYIVIDPL 129 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + ++ L+ + GV + + H A D Sbjct: 130 VID-------KAVDRYRRGKRTLEVTSGLYGVALDDAHDAGSD 165 >UniRef50_B9J6H2 Bacteriophage 186 Orf81-like protein n=1 Tax=Bacillus cereus Q1 RepID=B9J6H2_BACCQ Length = 288 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 24/185 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 I++D ETTGL VE+ +++ L + V + +I+G + Sbjct: 125 DNYIILDTETTGLG-LGHEIVEIAAIDLYGNTLL----NTFVTPTIPIPADSTKIHGITD 179 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + ++ +G T N AFD ++ +++ L Sbjct: 180 DMVKDA----PSWEETYMKLLTISQGKTILIYNAAFDIPKISYTCEVHNIAPKKLKSE-- 233 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ID L A + H AI D + + + + Sbjct: 234 --------CIMELYAEYIDSQYWVPLSEAA-----GTITSHRAINDCKSVLIVLENIWNE 280 Query: 183 AAAHL 187 L Sbjct: 281 IQHTL 285 >UniRef50_C5MBT8 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MBT8_CANTT Length = 288 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 28/185 (15%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E GL + + + ++N + F V+ ++G Sbjct: 123 RYISLDCEFVGLGPEGSESAVARISIVNYFG--VVLFDSF--VKPQGKVTDFRTWVSGIE 178 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L A + L+G G D ++ Sbjct: 179 SFHLKDAI----DFKKAQEITGNLLKGKILVGHAIKNDLDML---------------YLS 219 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVV-NRHSAIGDAAATAFCFDML 179 + D + + + + L +A+ L + + +HS++ DA AT F + Sbjct: 220 HPKSMIRDTSKFKKFREIAGG-KAPSLKKLAKEFLEIDIQIGKHSSVEDARATMLLFRLF 278 Query: 180 RHTAA 184 R Sbjct: 279 RKEIE 283 >UniRef50_A4B9Q7 Putative DNA polymerase, exonuclease activity n=1 Tax=Reinekea blandensis MED297 RepID=A4B9Q7_9GAMM Length = 192 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 59/184 (32%), Gaps = 18/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAA---DPKAMEING 59 +++V+DLE TGL+ + G + ++ G H + A + I+ Sbjct: 16 RVLVLDLEMTGLNAQEDSIISAGWVVIEQGRIELSLAGHQYFQPTAMMASDVSASAHIHM 75 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L ++ Q + L + + + D + + + Sbjct: 76 ITDHLLEQQG---QPLGHWLQRLNGDLLADRWVFHHAPIDMAFLKMFSQRLDIVLPSV-- 130 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTEL---EGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + D + + E L A R +P +H A+ DA ATA + Sbjct: 131 ------TIEDTVLLEQKRFSDLTLESQQQLSLTACRARHRLPAYRQHHALSDALATAELY 184 Query: 177 DMLR 180 L Sbjct: 185 LALM 188 >UniRef50_C2M4A1 Exonuclease, RNase T and DNA polymerase III n=2 Tax=Capnocytophaga RepID=C2M4A1_CAPGI Length = 184 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 66/188 (35%), Gaps = 19/188 (10%) Query: 1 MAKQLIVVDLETT---GLDYDT--ALPVEVGLLNVDT-GESLYFVPHITVEQ-LAAADPK 53 M ++I++DLE T G+ + +E+G+ +DT + I V+ + P Sbjct: 1 MTNKIIIIDLEATCWEGIPPKGEVSEIIEIGICLLDTLTGEVSDNRGILVKPTHSKISPF 60 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 ++ + RE ++ ++ + ++ S +D ++ +Q +P Sbjct: 61 CTQLTTLTPELVAREGVSFEEALQILKK--EYQAYQYTWASYGNYDRNMLQKQCALRKLP 118 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAAT 172 + R ++ + + G+ L +P+V H DA Sbjct: 119 YPMRNEHINVKERFQEVTQH---------PKRLGMHQALNYLKIPLVGTHHRGKDDAYNI 169 Query: 173 AFCFDMLR 180 A L Sbjct: 170 AKIMYKLI 177 >UniRef50_Q5NWQ5 Putative exonuclease n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWQ5_AZOSE Length = 342 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 26/177 (14%) Query: 9 DLETTGLDYDTALPVEVGLLNVDTGES------LYFVPHITVEQLAAADPKAMEINGYYE 62 D+ETTGL D+ +++GL+ + + + + + G + Sbjct: 47 DVETTGLKKDSDKIIDIGLVLAEFDRVSGQVLRVLERYSGFEDPGRPIPEEITRLTGIRD 106 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + + N FD + + ++ + + Sbjct: 107 EDVLEQTFDDARVEALIAR------ADLVVAHNAPFDRGFLELRFPSFQKKWWACSQREA 160 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ L+ +A ++G H A+ DA T F + Sbjct: 161 PWSQMMT--------------GSTKLEWLAFQIGGCFYEAHRALVDAEVTLFILAQM 203 >UniRef50_B2V1C6 Exonuclease, RNase T and DNA polymerase III n=5 Tax=Clostridium RepID=B2V1C6_CLOBA Length = 243 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 21/187 (11%) Query: 4 QLIVVDLETTGLDYDTA-------LPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKA 54 IV DLE +++G + +++ + + ++ P Sbjct: 2 NYIVYDLEFNHQYSKDDKASNITFEVIQIGAVKLNSNLEVVSTFNRLIKPTVHTEIHPFI 61 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMP 113 ++ + E + + + ++ F D + + +++ Sbjct: 62 KDLTQITTEMVNSEKY----FSDVYDDFIKFIGNKEFTVCIWGTSDIKELLKNVKFHNLE 117 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAAT 172 + D+ A+ + GL A E +P+ H A DA T Sbjct: 118 ------EIYDLRKYIDVQNLASKYIKTQKGTKVGLKAAIEFFNLPIEKEFHDAFNDAYYT 171 Query: 173 AFCFDML 179 A F L Sbjct: 172 AQIFKKL 178 >UniRef50_A1WUZ8 Ribonuclease T n=10 Tax=Gammaproteobacteria RepID=A1WUZ8_HALHL Length = 226 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 66/196 (33%), Gaps = 25/196 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESL-------YFVPHITVEQLAAADPKAMEIN 58 +VVD+ET GL +T +++ + + E H+ + A DPKA+E+N Sbjct: 34 VVVDVETGGLQAETDALLQIAAVILRAEEGTGRLYPAETHTCHVQPFEGARIDPKALELN 93 Query: 59 GYYERGLYREALTEQQ-----TAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSM 112 G R A+ E+ E+++ G N FD + Sbjct: 94 GIDPEHPLRMAVPERDALGKMFNPVRQELRNTGCNRAVLVGHNAFFDLAFLNAAVTRTGF 153 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAA 170 +P + D A L + G+ HSAI DA Sbjct: 154 KRNPFHPFSSF-----DTATL-----GGLAYGQTVLAKAVKAAGIEWDAKEAHSAIYDAE 203 Query: 171 ATAFCFDMLRHTAAAH 186 TA F + + AH Sbjct: 204 KTAELFCAIVNCWDAH 219 >UniRef50_Q9HIG3 Putative uncharacterized protein Ta1376 n=1 Tax=Thermoplasma acidophilum RepID=Q9HIG3_THEAC Length = 188 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 17/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +I +D ETTGLD + VG + + F + A D A+ +NG+ + Sbjct: 1 MIFIDTETTGLDPTKCSVISVGAVVYEDPS-SRFYMEARPDPDAMIDDGALAVNGFTKEY 59 Query: 65 LYREALTEQQTAVAWGEVQDWL----RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L +W T AG N FD + ++++ + S+ + Sbjct: 60 LS---SIANAMYDMLTTFTEWYASNSSDYTVAGYNIDFDISFLSQECLMNSVRMIRIDRR 116 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDML 179 + Y G+ LD + LG+ H+A+ A A A + ML Sbjct: 117 IDLKNLFETSDLYKGGRK--------RLDDLLMALGLGTERKPHNALYGALAEAEAYAML 168 Query: 180 RHTAA 184 Sbjct: 169 VEKRR 173 >UniRef50_B3S2Z3 Putative uncharacterized protein n=2 Tax=Trichoplax adhaerens RepID=B3S2Z3_TRIAD Length = 276 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 53/188 (28%), Gaps = 16/188 (8%) Query: 5 LIVVDLETTG--LDYDT--ALPVEVGLLNVDTGESLY---FVPHITVEQLAAADPKAMEI 57 V+D E T ++ +E L V+ F + ++ Sbjct: 81 YCVIDFEATCEEVNPRKYKHEIIEFPALMVNARTLAVESQFHFYCRPVMNPKLSSFCTKL 140 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDS-TIVARQRVTYSMPFS 115 G ++ + + ++D L +TF ++ FD + Q +P Sbjct: 141 TGIDQKTIDSADAFKVVFQNFQKWLEDVLGESTFVVVTDGPFDITRFLTIQCKVDKIPMP 200 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAF 174 W +L + L + L +P R HS I DA A Sbjct: 201 Y------WASNWTNLKRTFKAFYKLSGQRFPTLQDMLGALKIPHDGRLHSGIDDAKNIAK 254 Query: 175 CFDMLRHT 182 L Sbjct: 255 ILCQLIRD 262 >UniRef50_B8H5Y8 DNA polymerase III epsilon-like protein n=2 Tax=Caulobacter vibrioides RepID=B8H5Y8_CAUCN Length = 209 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 45/156 (28%), Gaps = 16/156 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++I +D ET A P +GL ++ GE H M +G Sbjct: 9 KVIAIDFET--ASEQRASPCSIGLAWIEDGEVARVEHHYIRPPGNRFAAFNMAFHGIRPE 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ L G N +FD +++ R Y +P Sbjct: 67 HVADA----DEWPDVLERIRPELEGALVLAHNASFDISVIRRTCEHYDVPAPG------- 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV 159 L + L+ V LGV Sbjct: 116 ---FDYLCTVQVARSVWPELPSHKLNVVCGHLGVDF 148 >UniRef50_C6JNE1 Exonuclease RNase T and DNA polymerase III n=2 Tax=Fusobacterium RepID=C6JNE1_FUSVA Length = 188 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 59/184 (32%), Gaps = 10/184 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYE 62 +++ +D ET G+ + + +++ + E F ++ + +A++I G Sbjct: 2 KILFIDTETGGI-TEKSALIQLSGIVQIGKEVAEEFNFYVKPFPGSEVTDEALKIQGRTR 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNT------FAGSNPAFDSTIVARQRVTYSMPFSP 116 + + E + + G N FD ++ + + Sbjct: 61 EEIEKYDSEEVVFRKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINKFLRRNGEKYLF 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + L +AA K I + L+ G+ + H ++ D AT Sbjct: 121 SYIQATTLDPLQWIAALQLLKK-IPVLKDNKLETWCNHFGIELK-AHDSLEDIKATKALT 178 Query: 177 DMLR 180 + Sbjct: 179 KKMM 182 >UniRef50_B9Z8P9 Exonuclease RNase T and DNA polymerase III n=3 Tax=Neisseriaceae RepID=B9Z8P9_9NEIS Length = 202 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 10/182 (5%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGY 60 + +I + TT LD A + +G + + + + V+ + + ++G Sbjct: 27 SDDVISLACNTTSLDVAEAELLTIGAVRLSGNRIVTSEALDLLVKPGRPLTREGVGLHGL 86 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R L A + D++ G G FD ++ + P Sbjct: 87 RPRDLSGGL----DAEAAVRCLLDFIGGRPVLGYYLEFDIAVLDKYLRPLLGIGLPNRQV 142 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + A+ + LGVPV+ RH A+ A A + L+ Sbjct: 143 EISGRYYDY-----KLRQQPNGRVDLRMAALIDDLGVPVLPRHDALNKAITAAMLYLALK 197 Query: 181 HT 182 Sbjct: 198 RR 199 >UniRef50_Q28W63 Exonuclease n=5 Tax=Rhodobacterales RepID=Q28W63_JANSC Length = 196 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 26/187 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I VD+ET + ++GL V + + ++ + P +++G Sbjct: 16 RFIAVDVET--ANNAQGSICQIGLCCVGSDD-SLNTVSTLIDPEQSFSPFNTDLHGISAE 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A+ + L + + FD Y +P Sbjct: 73 TVNGA----PTFPQAYASLYPVLNAHRLVQHS-RFDEAAFTAACARYDVPMVTSH----- 122 Query: 124 HHRLADLAAYAAGKLNIDPTE---LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + GL ++ + LG+ + H A DA A+A Sbjct: 123 -----WTDSVKIARQAWPELKGAGGHGLASLKKALGLSF-HHHDAGEDARASATVIL--- 173 Query: 181 HTAAAHL 187 A A + Sbjct: 174 -RAEARI 179 >UniRef50_C1BVW9 RNA exonuclease 4 n=2 Tax=Caligidae RepID=C1BVW9_9MAXI Length = 325 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 26/187 (13%) Query: 4 QLIVVDLETTGLDYDTAL-PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++I +D E G+ ++ A + + G+++Y V+ +++G Sbjct: 128 KIIGMDCEMVGVGFNGARSILARASIVNHFGKTIYDKF---VKPSEKVTDYRTDVSGIRP 184 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + V E+ + ++G G D ++ Sbjct: 185 KDIAKGI----EFKVVQEEISEIIKGRILVGHAIKHDLKVL---------------YLSH 225 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPV-VNRHSAIGDAAATAFCFDMLR 180 + D + Y + D L + A L V V HS + DA A + M R Sbjct: 226 PKKYIRDTSIYKPFRKIFDG-RTPSLKKLTATILSVNVQEGEHSPVEDARAAVRLYTMHR 284 Query: 181 HTAAAHL 187 L Sbjct: 285 KEWENSL 291 >UniRef50_A9KDF1 Ribonuclease T n=5 Tax=Coxiella burnetii RepID=A9KDF1_COXBN Length = 224 Score = 99.9 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 64/196 (32%), Gaps = 24/196 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGES------LYFVPHITVEQLAAADPKAMEING 59 +VVD+ET GL+ +E+ + V+ + F H+ + AA DP ++EI Sbjct: 21 VVVDIETGGLEPLKNPLLEIAAVLVEVNKEGQLCQGELFACHVLPFEGAALDPASLEITR 80 Query: 60 YYERG-----LYREALTEQQTAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 + + + A V R G N FD T + + Sbjct: 81 IDPYHPFRFAVDEKKALQDLFAFVEKAVNVAQCRRAVLVGHNAHFDLTFIQAAMKRCKLK 140 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAA 171 SP + D A AA L +P HSAI DA Sbjct: 141 KSPFHAFTCF-----DTATLAAIVF-----GKTVLAKALRAANLPFDKKEAHSAIYDAKC 190 Query: 172 TAFCFDMLRHTAAAHL 187 A F + + HL Sbjct: 191 AAELFCKITNQIDGHL 206 >UniRef50_C5R9G6 Putative uncharacterized protein n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R9G6_WEIPA Length = 183 Score = 99.5 bits (247), Expect = 5e-20, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 53/193 (27%), Gaps = 27/193 (13%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA----AADPKAMEIN 58 K +V DLE G + +E+G + V +++ I + + Sbjct: 7 KNYVVFDLEMNG----SNQIIEIGAIKVTGSQNIEKFSVIVNNPPVGSAMKSFKYITKSM 62 Query: 59 G-----YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAF-DSTIVARQRVTYSM 112 G + E+ A ++ G D ++ ++ Sbjct: 63 GGKNGWITLDMISHGICEER----ALNRFMRFVGDYAIVGHAIVDGDVQLIKEGLQHNNL 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGDAAA 171 +L D L +AE GV + +H A+ DA Sbjct: 119 ------GKWDTRGKLYDTQQIHGAIAGNPQ--DISLMDLAEMYGVDLGEQKHRALPDAKE 170 Query: 172 TAFCFDMLRHTAA 184 T F ++ Sbjct: 171 TLAIFLAMKKAWR 183 >UniRef50_D1B7G9 Exonuclease RNase T and DNA polymerase III n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B7G9_THEAS Length = 280 Score = 99.5 bits (247), Expect = 5e-20, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 62/186 (33%), Gaps = 20/186 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 +D ET + P VG++ V E + + + +P + ++G Sbjct: 2 DFAAIDFET--ANRFHESPCAVGVVVVRQWEIVEEASFLILPHRDFRFFEPMNVRVHGIT 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + L+ + A +V ++G N FD ++ R YS+ Sbjct: 60 PRRV----LSSPEFPDALEDVISMVQGLPLMAHNARFDLEVLMRTMALYSL--------- 106 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 R + + + GL+++AE LG P N H + DA A Sbjct: 107 -GEARFDWVCSLRLARRAFRLRRC-GLESMAEHLGFPF-NHHDPLDDARLCAKVAMASLL 163 Query: 182 TAAAHL 187 L Sbjct: 164 ELGMTL 169 >UniRef50_C5YXX8 Putative uncharacterized protein Sb09g000300 n=1 Tax=Sorghum bicolor RepID=C5YXX8_SORBI Length = 319 Score = 99.5 bits (247), Expect = 5e-20, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 47/179 (26%), Gaps = 16/179 (8%) Query: 3 KQLIVVDLETTGLDYDTAL-PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++++ D+ETT +E G + V + + + T+ + + Sbjct: 9 REIVFFDVETTAPTPAGRWWLLEFGAILVCPRKLVEVASYDTLIRPGDLSVAVTKRF--- 65 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVG 120 + + ++ + L G +AG N FD + P Sbjct: 66 -SDVE-AIASAPPFKDVADKIFEILDGRVWAGHNIQRFDCPRIREAFADIGRPAPEPAGV 123 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + +A G+ H ++ DA Sbjct: 124 IDSLNV--------LAADFGRRAGDLKMATLATYFGIGKQK-HRSLDDARMNLEVLKHC 173 >UniRef50_B9KC73 Putative uncharacterized protein n=1 Tax=Campylobacter lari RM2100 RepID=B9KC73_CAMLR Length = 459 Score = 99.5 bits (247), Expect = 6e-20, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +IV+D ETTGL +++ ++ D L F + + + +A +I+G Sbjct: 150 NVIVIDTETTGLREWEDEILQLSII--DETGYLIFDKYFKPKYKSTWI-EAQKIHGIKPA 206 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +A + + ++ + + G N FD + R P + V +++ Sbjct: 207 FVQNKA-SIDNYKIQLEKI--FNDADVIIGYNLDFDLKFIKRVIDFEK-PMFCIDVMKLF 262 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLG-------VPVVNRHSAIGDAAATAFCF 176 + ++ + L A + H A+ DA AT + Sbjct: 263 TSYYHEESSILPNVDCGYSYK--KLTFAAWHFKNPNALNPLNFHGAHGALEDARATLYVL 320 Query: 177 DML 179 L Sbjct: 321 TKL 323 >UniRef50_A9V5V0 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V5V0_MONBE Length = 602 Score = 99.5 bits (247), Expect = 6e-20, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 45/187 (24%), Gaps = 32/187 (17%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +L VD E A + ++ D E V +G Sbjct: 266 EPRLFAVDCEMVRCGSRYA-LARISVV--DQDEVTVMDEF--VVPDEPVTDYVTRFSGIT 320 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L ++ G + D ++ R Sbjct: 321 PELLANATSRLADIQHRLAQLLRPHD--ILVGHSLENDLGVLQR---------------- 362 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVVNR---HSAIGDAAATAFCFD 177 H + D A L + + L + + L + N H+++ DA A Sbjct: 363 -SHPHVIDTAVL----LAREGRYKQKLSMLTKKHLRYEIQNAADGHNSVEDALACLRLAK 417 Query: 178 MLRHTAA 184 +R Sbjct: 418 HVRQRPE 424 >UniRef50_A9HQT1 Exonuclease n=3 Tax=Proteobacteria RepID=A9HQT1_9RHOB Length = 287 Score = 99.1 bits (246), Expect = 6e-20, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D+ET + + A VG+ + GE L + ++ D + I+G E Sbjct: 2 KFVAIDVET--ANANMASICSVGVAVFENGE-LAQEWYSLIDPRDYFDGMNVSIHGIDET 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A ++ L N FD + + +S+P Sbjct: 59 QVVGA----PTFAEITEQLGAMLSDNVVVTH-THFDRVAMHQAARHWSVPP--------V 105 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D A A GL V + +G H+A+ DA A+ + + Sbjct: 106 TCTWLDSARVARRTWEECAQRGYGLANVCKLIGHTFE-HHNALEDAKASGVVLLAAMNKS 164 Query: 184 AAHL 187 L Sbjct: 165 GFDL 168 >UniRef50_C0VTN4 DNA polymerase III, epsilon subunit n=3 Tax=Corynebacterium RepID=C0VTN4_9CORY Length = 224 Score = 99.1 bits (246), Expect = 6e-20, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 16/186 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++ DLETT D A V ++ +D ++ + +A +++G Sbjct: 6 PSKMVAFDLETTTNDPLKAHVVTSSVIRIDGSN--ADETYLLADPGIPISEEAEKVHGIS 63 Query: 62 ERGLYREALTEQQTAVAWGEVQD--WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E+ W G T N FD TI+ + +++ + Sbjct: 64 NEYAKANGEPHDDVVAKTVELIRRGWDEGFTLIVFNGCFDLTILHQCSPDFTIDGLVVDP 123 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + K + L A++E + + H++ D+ A A Sbjct: 124 YIIDK------------KKDHYRAGKRNLSAMSEYYEIRLDKAHNSSADSLAAARIAWKQ 171 Query: 180 RHTAAA 185 Sbjct: 172 ARRWPE 177 >UniRef50_C5L3L2 RNA exonuclease, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5L3L2_9ALVE Length = 362 Score = 99.1 bits (246), Expect = 6e-20, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 55/188 (29%), Gaps = 21/188 (11%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 K ++ +D E G + + + G+ L V ++ G Sbjct: 63 TKDVVAIDCEMVGTGPEGKDSILARASIVNYFGKVLLDA---LVRPTKKVTDYRTQVTGL 119 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E L R + ++ + + G D I+ G Sbjct: 120 DEATLNRLGQSAEEVKEKAASILLNQK--VVVGHAIHHDLDILD-------------LTG 164 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVV-NRHSAIGDAAATAFCFDM 178 ++ + D + Y + T++ L + E L + HS++ DA T + + Sbjct: 165 KIDPILIRDTSTYPGLRPENLTTKVPSLKKLTELHLDRKIQTGTHSSVEDARCTLMLYKL 224 Query: 179 LRHTAAAH 186 + Sbjct: 225 KKDEWEEE 232 >UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E98F Length = 488 Score = 99.1 bits (246), Expect = 6e-20, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 48/187 (25%), Gaps = 15/187 (8%) Query: 1 MAKQ---LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV---PHITVEQLAAADPKA 54 M++ + D ET G+ P + + D + P+A Sbjct: 1 MSQPPASFLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYLPHPQA 60 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFD-----STIVARQRVT 109 + + G + E E + ++ FD + Sbjct: 61 VLVTGITPQMTLAEGEYEYTFMQKIHQAMIQPNTCVVGYNSIKFDDEVSRFSFFRNFMDP 120 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSA 165 Y + + + A + L+ + + G+ N H A Sbjct: 121 YQREYLHGNSRWDLINLVRACYALRPEGIKWPLGDNGLVSFKLERLTQENGISHTNAHDA 180 Query: 166 IGDAAAT 172 + D AT Sbjct: 181 LSDVHAT 187 >UniRef50_Q31EW8 Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31EW8_THICR Length = 293 Score = 99.1 bits (246), Expect = 6e-20, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 58/178 (32%), Gaps = 24/178 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVG--LLNVDTGES---LYFVPHITVEQLAAADPKAMEIN 58 ++ ++D ETTGLD +E+G ++ D+ + + + E + ++ Sbjct: 42 KVCIIDTETTGLDTRVCEIIELGYQIVEFDSQGNFYQILTAKNFLNEPEGEISAEVTQVT 101 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + + D N AFD +V R +S Sbjct: 102 GLTLDDVKGHQIPWAEVEA------DMADVQLCVAHNAAFDRPVVER--------YSDCF 147 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + +VW + + K+ + + ++G H A+ D A Sbjct: 148 IDKVWGCSAVQVDWFHLAKV-----GSRSQEFLCWKVGQFFYGAHRALDDVQALTHLL 200 >UniRef50_C6MU49 Exonuclease RNase T and DNA polymerase III n=1 Tax=Geobacter sp. M18 RepID=C6MU49_9DELT Length = 314 Score = 99.1 bits (246), Expect = 7e-20, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 27/181 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD----TGESLY--FVPHITVEQLAAADPKAMEING 59 I +D ETTGL++ +E+G++ + +GE + P+ EI G Sbjct: 57 ICLDTETTGLNHKEDKVIELGIVAFEFDPLSGEIYRISDRYSGFEDPGFPIPPEVREITG 116 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + A+ ++ + + N AFD V + + Sbjct: 117 ISDEMVRGQ-----AFDDAFVDLLA-GKADLVIAHNAAFDRKFVETRFPAF--------- 161 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA-ATAFCFDM 178 +L + + LD + + G +N H A+ DA + Sbjct: 162 -----KKLPWACTVCQIDWSAERLSSRTLDFLLFKTGSLTINAHRALDDAEGVLGLLLER 216 Query: 179 L 179 L Sbjct: 217 L 217 >UniRef50_C0VS85 Putative uncharacterized protein n=3 Tax=Corynebacterium glucuronolyticum RepID=C0VS85_9CORY Length = 2526 Score = 99.1 bits (246), Expect = 7e-20, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 17/178 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V++++T+G+ + +E+G++ + + + A I+G ER Sbjct: 2129 FAVLNVKTSGIS-ERDRIIEIGIVLATLNGKVEGTYTTLINPRRSFSDSA--IHGISERM 2185 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + ++ + L + F S + R+ ++ + Sbjct: 2186 ----TVAAPVFEEVADDIAELLDRRILIAHDAPFVSKQLGREFSRSNVK------AIHLN 2235 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ + + LDA G+ + H A+ DA ATA ++L H Sbjct: 2236 DGYCTMSHSPKLLGSSGRSLSSALDAA----GLKNEHSHCALDDAMATANLLNVLLHK 2289 >UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM Length = 486 Score = 99.1 bits (246), Expect = 7e-20, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 45/198 (22%), Gaps = 15/198 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF---VPHITVEQLAAADPKAMEING 59 D ET G P + + + DP+A+ I G Sbjct: 12 PTFYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPDPEAVLITG 71 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + E A A + +N FD + Sbjct: 72 ITPQYALNQGVNEANFAQAIVQEMSQPNTIIIGYNNIRFDDEVTRSLCYRNFYD-PYAHT 130 Query: 120 GRVWHHRLADLAAYAAGKLNID----------PTELEGLDAVAERLGVPVVNRHSAIGDA 169 + + R + A L+ + + + H A+ D Sbjct: 131 WQNGNSRWDLIDVVRACYALRPEGIHWPEDEDGRVTLRLEKLTQANRIDHGQAHDAMSDV 190 Query: 170 AATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 191 RATIAMAQ-LLAEKQPKL 207 >UniRef50_B4VF18 DNA polymerase III subunit epsilon n=9 Tax=Streptomyces RepID=B4VF18_9ACTO Length = 246 Score = 98.7 bits (245), Expect = 8e-20, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 4/157 (2%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY-YER 63 L+ DLETTG + + V ++ V GE + +A I+G R Sbjct: 9 LVGFDLETTGTEPGESRIVTAAVVEVRGGEVRERRG-WLADPGIPIPEQASAIHGISTAR 67 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + R N AFD T+++ + + +P +G Sbjct: 68 AVAEGRPVREVAQEVAAALVEHWRRGAVVVAYNAAFDLTLLSAELARHGLPSLSDRLGGA 127 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV 159 + D ++ L+AV GV + Sbjct: 128 PTGPVVDPLTIDRA-VDRYRRGKRTLEAVCGVYGVTL 163 >UniRef50_B2AUA2 Predicted CDS Pa_1_18450 n=3 Tax=Sordariomycetidae RepID=B2AUA2_PODAN Length = 718 Score = 98.7 bits (245), Expect = 8e-20, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 45/183 (24%), Gaps = 32/183 (17%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++++ +D E V L++ D L V+ + +G + Sbjct: 323 REVLAIDCEMCLTGPGELALTRVSLVSWDGETVLDE----LVKPEKPITDYVTQYSGITK 378 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L T ++ G + D + + Sbjct: 379 EMLDPVTTTLSDIQAKLLDLL--HPRTILLGHSLDSDLKALQ-----------------L 419 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-------GVPVVNRHSAIGDAAATAFC 175 H + D + L +A+R G +N H ++ DA Sbjct: 420 AHPFIVDTSMLFPHARGPPL--KNSLKYLAQRHLSREVQKGGGTINGHDSVEDAKTCLDL 477 Query: 176 FDM 178 Sbjct: 478 VKK 480 >UniRef50_Q8WTP8 Apoptosis-enhancing nuclease n=42 Tax=Chordata RepID=AEN_HUMAN Length = 325 Score = 98.7 bits (245), Expect = 8e-20, Method: Composition-based stats. Identities = 19/183 (10%), Positives = 44/183 (24%), Gaps = 27/183 (14%) Query: 1 MAKQLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 + + + +D E G + +++ + + Sbjct: 106 LPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHGDVLYDK----YIRPEMPIADYRTRWS 161 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + + VA E+ L+G G D + + Sbjct: 162 GITRQHMRKAV----PFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYV 217 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNR-HSAIGDAAATAF 174 + + L +A +L + V HS++ DA Sbjct: 218 PNFLSEP-------------GLHTRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAME 264 Query: 175 CFD 177 + Sbjct: 265 LYR 267 >UniRef50_Q9APT6 DNA polymerase III n=1 Tax=Pseudomonas aeruginosa RepID=Q9APT6_PSEAE Length = 204 Score = 98.7 bits (245), Expect = 9e-20, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 28/186 (15%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV--PHITVEQLAAADPKAMEING 59 ++ +++VD+E G + VE+ + + + ++ +A ++G Sbjct: 10 SEPIVIVDVE--GNGHTPPDLVELAIASFP---VVEGEEPSSWLIKPPNPITWQAKRVHG 64 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + G+V+ L+G F N + D ++ R Sbjct: 65 IGNSSVKG----SPVWEELRGDVEQQLQGKWFVAHNASIDYEVMKRHLP----------- 109 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAFCF 176 + + + E L A+ G+ H A DA TA Sbjct: 110 ---DWAPVGVIDTLKLARHVYPDAESHSLSALLAMTGLDSEVSGELHRAGEDARVTALLL 166 Query: 177 DMLRHT 182 L Sbjct: 167 SRLLKD 172 >UniRef50_B6U6C6 Exonuclease n=1 Tax=Zea mays RepID=B6U6C6_MAIZE Length = 302 Score = 98.7 bits (245), Expect = 9e-20, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 47/184 (25%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTG---LDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M +++ D+ETT +E G + V + + + T+ + + Sbjct: 3 MRDEIVFFDVETTAPSAAGPGRWWLLEFGAILVCPRKLVEVGSYDTLIRPGDLSAVSRRF 62 Query: 58 NGYYERGLYREAL-TEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFS 115 + + + ++ D L G +AG N FD + P Sbjct: 63 T----DDVEAAIMASAPPFKDVADKIFDILDGRVWAGHNIQRFDCPRIREAFADIGRPAP 118 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + +A G+ H + DA Sbjct: 119 EPVGVIDSLNV--------LAAHFGRRAGDLKMATLATYFGIGKQK-HRGLDDARMNLEV 169 Query: 176 FDML 179 Sbjct: 170 LKHC 173 >UniRef50_A5ZSM2 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A5ZSM2_9FIRM Length = 319 Score = 98.7 bits (245), Expect = 9e-20, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 55/188 (29%), Gaps = 23/188 (12%) Query: 4 QLIVVDLETT---GLDYDTA-----LPVEVGLLNVDTGESLYFVPHITVEQLAA--ADPK 53 IV DLE G + +E+G + ++ + V V+ Sbjct: 2 NYIVFDLEWNQSPGGKKYSNSRLPFEIIEIGAVKMNEQREVVDVFQRLVKPQVYNWIHDS 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS-M 112 E+ + L + A E W + D + R Y + Sbjct: 62 IHEVIHVDYKDLADG----EPFQQAVREFLKWCGEEYVFCTWGNQDVMELQRNMKYYGML 117 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGDAAA 171 P V ++ + + L+ +++G+P + H A+ DA Sbjct: 118 SLLPGPVTYYDVQKIYGICH-------EEAGGRRSLEFAIDQMGIPKAQDFHRALTDARY 170 Query: 172 TAFCFDML 179 T F L Sbjct: 171 TGDIFKTL 178 >UniRef50_Q47UC9 Exonuclase n=2 Tax=Alteromonadales RepID=Q47UC9_COLP3 Length = 228 Score = 98.3 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 54/181 (29%), Gaps = 9/181 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AADPKAMEINGYYE 62 +++ VD ETTGL+ + VG L + + + + + + + I+ + Sbjct: 43 EILAVDFETTGLNAKQDKLLSVGFLTLKKQQMSLKTSYHQIIKTKAQLEESNVIIHHITD 102 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + Q A+ + L G + +A + Sbjct: 103 S----QKEQGQALAIVVEALLKALAGKVMLVHFARIERQFLAEACYELYGMAPIFPMIDT 158 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + L + +P + H+A+ DA ATA F Sbjct: 159 LALAKRRLDK----RDVAYDPSELRLTNLRNNFQLPEHHAHNALNDAIATAELFMAQMSK 214 Query: 183 A 183 A Sbjct: 215 A 215 >UniRef50_Q8RXK2 Small RNA degrading nuclease 3 n=5 Tax=Arabidopsis thaliana RepID=SDN3_ARATH Length = 782 Score = 98.3 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 28/190 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +++ +D E + + V VG ++ D L V+ +I G Sbjct: 142 STRMLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDK----FVKPDKPVIDYKTDITGVT 197 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L R L+ G G D ++ Sbjct: 198 AEDLERATLSVADIQKKLRRFLSV--GTILVGHGLHNDLQVLR----------------- 238 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPV---VNRHSAIGDAAATAFCFD 177 + H R+ D + ++ T+ L+ + + LG V H+ + DAAA Sbjct: 239 IDHARVIDTSYVFEF-VDAPKTQRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVL 297 Query: 178 MLRHTAAAHL 187 AA L Sbjct: 298 AAVEKGAATL 307 >UniRef50_C4LJG9 Putative DNA polymerase III epsilon subunit n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJG9_CORK4 Length = 256 Score = 97.9 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 12/179 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGES---LYFVPHITVEQLAAADPKAMEINGY 60 L+ VD+ETTGLD D + VG++ ++ + + + ++ I+G Sbjct: 63 PLLAVDVETTGLDADRDRLLSVGMVAINGRAIPLATADHWLVRYHEGDVSVGQSATIHGI 122 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTV 119 + L +V + G + ++ +P+SPL V Sbjct: 123 TDSQLENGR----SLLDILTDVVNAAAGRALLAHLALIEHDFISTACERAVGVPWSPLCV 178 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + A L G+P + H+A+ DA A A + Sbjct: 179 VDT----MDLERRSAVSFGRRPGRGEVRLMNARYSRGLPSYHNHNALVDALACAELYLA 233 >UniRef50_Q211V1 Exonuclease n=2 Tax=Rhizobiales RepID=Q211V1_RHOPB Length = 314 Score = 97.9 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 17/168 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++ +D ET + + P +GL ++ G+ + + + +++G Sbjct: 3 ILAIDFET--ANEKRSSPCALGLAWIERGQIVRREYRLIKPKEMRFGVFEAKVHGLSPSE 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + Q+ E ++ N FD ++ Y + + Sbjct: 61 VKDA----QEFPEVISEFLSDIQSGLLLAHNAQFDVDVLCATLALYGIAIPRFSF----- 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 L + + L A+ E+LG+ H A DA A Sbjct: 112 -----LCSQRVASRVWSDEKSLKLSALGEKLGISF-RHHQADEDAFAC 153 >UniRef50_UPI000155D9F8 PREDICTED: similar to Interferon-stimulated gene 20 kDa protein (Promyelocytic leukemia nuclear body-associated protein ISG20) (Estrogen-regulated transcript 45 protein) n=1 Tax=Equus caballus RepID=UPI000155D9F8 Length = 171 Score = 97.9 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 26/180 (14%) Query: 3 KQLIVVDLETTGLDYDTAL-PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++++ +D E GL L+++ ++ ++G Sbjct: 5 REVVAMDCEMVGLGPFGESGLARCSLVDLHGTVLYDK----FIQPDGEIVDYRTRVSGVT 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + + A E+ LRG G + D + Y++ + Sbjct: 61 PRHMEKAT----PFTEARQEILQLLRGKLVVGHDLKHDFKALKESMDGYAIYDTS----- 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNR-HSAIGDAAATAFCFD 177 K + L ++ERL + HS++ DA AT + Sbjct: 112 --------TDRLLWRKAKLQNCRRVSLRVLSERLLGWHIQNSRSGHSSVEDARATMELYK 163 >UniRef50_D1H2G0 Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) n=10 Tax=Magnoliophyta RepID=D1H2G0_VITVI Length = 447 Score = 97.9 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 47/187 (25%), Gaps = 29/187 (15%) Query: 4 QLIVVDLETT-------GLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPK 53 ++ D+ETT G +E G + V + + + T+ + Sbjct: 9 EIAFFDVETTVPTRVGQGF-----AILEFGAILVCPRKLVELESYSTLVRPHDLSLVSSL 63 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSM 112 ++ NG ++ V D L G +AG N FD + Sbjct: 64 SVRCNGIT----RDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGR 119 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 P + + +A G+ H ++ D Sbjct: 120 PAPEPKGSIDSLAL--------LTQRFGRRAGDMKMATLATYFGLG-QQTHRSLDDVRMN 170 Query: 173 AFCFDML 179 Sbjct: 171 LEVLKYC 177 >UniRef50_A9UYZ2 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UYZ2_MONBE Length = 320 Score = 97.9 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 55/199 (27%), Gaps = 18/199 (9%) Query: 5 LIVVDLETTG---LDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEIN 58 + V+D E T +E+ + +D F ++ + + Sbjct: 101 VCVMDFEATCEEERSPFPHEIIEIPAILLDAKSGELLDTFQTYVRPKLNPQLSKFCTNLT 160 Query: 59 GYYERGLYREALTEQQTAV-------AWGEV---QDWLRGNTFAGSNPAFDST-IVARQR 107 G + + L + A + D S+ +D +A Q Sbjct: 161 GITQDQVDAAKLFPEAWQDFEDFLGKAVQKFKASHDVDDVRVLCASDGPWDFRDFLAFQC 220 Query: 108 VTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAI 166 M + + + + GLD + + +G+ R HS I Sbjct: 221 QLSQMDYPAVCQQWMDVRKRLTKHFKLKWAGPERAAYATGLDFMLQAVGLTFEGRPHSGI 280 Query: 167 GDAAATAFCFDMLRHTAAA 185 D+ A +L A Sbjct: 281 DDSRNIARLVQVLIDEGAQ 299 >UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacteria RepID=B6J811_COXB1 Length = 458 Score = 97.6 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 10/188 (5%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGY 60 K + DLETTGL+ ++ + D E I + P+AM I+ + Sbjct: 6 KTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILIRLNPDVIPSPEAMIIHRF 65 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMP-----F 114 + + V G G N FD + +P + Sbjct: 66 SIDQMLSGKAEIEAIREIHQSV--NTPGTISVGYNTLGFDDEFLRFSFYRNLLPPYTHQY 123 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + LN L+ +++ + H+A+ D A+ Sbjct: 124 DNFCGRMDLYPLTILYYLFKPNALNWPDPFDLKLENLSKANQLAEGQAHNAMVDVEASVA 183 Query: 175 CFDMLRHT 182 +L + Sbjct: 184 LAKLLMNQ 191 >UniRef50_UPI00005884C7 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI00005884C7 Length = 360 Score = 97.6 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 26/186 (13%) Query: 6 IVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D E G+ ++ V ++N V+ E +G + Sbjct: 188 VALDCEMVGIGHEGKESILARVSMVNEYGHCIYDK----FVKPREKVTDFRTEFSGVRPK 243 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L++ ++ E+ D ++ G D ++ Sbjct: 244 DLFKG--NAEEFLTVQKEIADIMKDRILVGHALKNDMKVL---------------FLGQP 286 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPV-VNRHSAIGDAAATAFCFDMLRH 181 + D A+Y + + T+ L +A+ LGV V H+++ DA + + R Sbjct: 287 RKLIRDTASYPHFRELM-KTKRPSLKKLAKTVLGVTVQEGEHNSVEDAQTAMRLYTLHRT 345 Query: 182 TAAAHL 187 L Sbjct: 346 AWEKSL 351 >UniRef50_A3JK24 DNA polymerase III subunit epsilon n=1 Tax=Marinobacter sp. ELB17 RepID=A3JK24_9ALTE Length = 294 Score = 97.6 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 54/179 (30%), Gaps = 27/179 (15%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVD----TGESLYFVPHI--TVEQLAAADPKAMEINGY 60 ++DLETTGL +E+GL+ V TG+ V + + EI G Sbjct: 51 ILDLETTGLSAANDKIIELGLVKVRVSPSTGQLTEIVSMLDQYEDPGIPIPAVITEITGI 110 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + L E A A N +FD ++ ++ + Sbjct: 111 TDDMVAGRRLDEGALAQALA------GDGIILAHNSSFDRGFFEKRLPQHAGRRWACSFQ 164 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 V L E L+ + + G H A D A A+ Sbjct: 165 GVSWRAL--------------GFESSKLEYLLLKSGY-FYTGHRAEVDCLAVAWLMHCC 208 >UniRef50_D1N3T8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3T8_9BACT Length = 205 Score = 97.6 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 45/163 (27%), Gaps = 21/163 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA---ADPKAMEINGYY 61 ++ +D ET + D VGL D + + + ++G Sbjct: 2 ILALDFET--ANSDPGSVCAVGLAWFDGARIT-GSWESLIRPHRSCRWFSRLNIAVHGIT 58 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + W E+ G+ N AFD ++ R Y Sbjct: 59 PEMVAQA----PEWGDVWPELAPHFAGSMVIAHNAAFDVPVLLRTLELYGFAPPEFDFF- 113 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + + E L+ V++ LG H Sbjct: 114 ---------CTCKSARRVWPGLENHKLNTVSDFLGWEF-RHHD 146 >UniRef50_Q5NAC0 Os01g0280000 protein n=11 Tax=Magnoliophyta RepID=Q5NAC0_ORYSJ Length = 411 Score = 97.6 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 43/188 (22%), Gaps = 19/188 (10%) Query: 5 LIVVDLETTG---LDYDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEIN 58 +V+D E T + +E + V+ F ++ E+ Sbjct: 128 FVVIDFEATCDKENNPHPQEIIEFPSVLVNSATGQLEASFQTYVRPAYNQLLTDFCKELT 187 Query: 59 GYYERGLYREALTEQQT---AVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 G + + R + E + + ++ + + Sbjct: 188 GIQQIQVDRGVPLSEALLMHDKWLEEKGIKHKNFAVVTWSNWDCRVMLESECRLKRIRKP 247 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAF 174 + L + G+ H + DA TA Sbjct: 248 ---------PYFNRWINLKVPFQEVFGGVRCNLKEAVQLSGLTWEGRAHCGLDDARNTAR 298 Query: 175 CFDMLRHT 182 +L H Sbjct: 299 LLALLMHR 306 >UniRef50_C5DR59 ZYRO0B05764p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DR59_ZYGRO Length = 268 Score = 97.2 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 54/178 (30%), Gaps = 27/178 (15%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E G+ + V L+N + + V+ ++G Sbjct: 97 KFIAIDGEFVGVGPEGKENALARVSLVNYNGYVIMDE----YVKPRERVVDWRTWVSGIE 152 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +V D LR G A D + + + Sbjct: 153 PKHMRIAI----DYKEVQQKVADILRDRILVGHAVAHDLSAL---------------ALK 193 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVVNR-HSAIGDAAATAFCFD 177 + D + + + + L +A+ LG+ V HS++ DA T + Sbjct: 194 HPRSMIRDTSLFTPFRKEYAEGKTPSLKKLAKNVLGIDVQEAEHSSVEDAKITMLLYK 251 >UniRef50_UPI0000E49428 PREDICTED: similar to exonuclease domain containing 1 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E49428 Length = 613 Score = 97.2 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 57/200 (28%), Gaps = 31/200 (15%) Query: 5 LIVVDLETTGLDYDTA---LPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEIN 58 LIV+D E+T +E + ++ F ++ ++ E+ Sbjct: 20 LIVIDFESTCWKDKKNTSQEIIEFPAVLLNTTTGQLESEFQQYVMPDEHPVLSDFCTELT 79 Query: 59 GYYERGLYREA---LTEQQTAVAWGEVQ------------DWLRGNTFAGSNPAFDSTIV 103 G + + + + +++ D + TF + S + Sbjct: 80 GISQEQVENGVPLFICLNKFTSWLKKIESEKNLAYNRSTDDTRKLCTFVTWSDWDLSVCL 139 Query: 104 ARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR- 162 + + + + N + +GL + +G+ R Sbjct: 140 RYECQRKQLYKPSALNHWIDARAV---------YRNFYQRKPKGLSGALQEVGIEFAGRQ 190 Query: 163 HSAIGDAAATAFCFDMLRHT 182 HS + DA TA + Sbjct: 191 HSGLDDAKNTAILVWRMIQD 210 >UniRef50_B7GKP6 3'-5' exonuclease related protein n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GKP6_ANOFW Length = 240 Score = 97.2 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 39/176 (22%), Gaps = 17/176 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 I++D ETTG + L GE L + + G Sbjct: 57 TFILLDTETTGFSPQRGDEIFSLAALKTKNGEPLDLYCS-NFRPKRRIPEHVVTLTGITN 115 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + +L + G + D + Sbjct: 116 DDVAYA----PLLEEEIHHILSFLNHSILLGYHIQHDVAFLNEFLSRNYRTVLQQ----- 166 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 I LD + ++RH+A GD + + Sbjct: 167 ------TTIEMRKIMECIYHESFPTLDDALSFYHLTPIDRHTAKGDVMSLFEMWKR 216 >UniRef50_A3DCR5 Exonuclease, RNase T and DNA polymerase III n=3 Tax=Clostridium thermocellum RepID=A3DCR5_CLOTH Length = 215 Score = 97.2 bits (241), Expect = 3e-19, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 27/191 (14%) Query: 4 QLIVVDLETTGLDYDT------ALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAM 55 IV DLE L+ +E+G + ++ E F I + Sbjct: 2 NYIVYDLE---LNSKPFKSSIPNEIIEIGAIKLNENLQEIGMFSSFIKPKYFKKLFSVVK 58 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDST--IVARQRVTYSMP 113 + + + + W+ + S D I+ + + Sbjct: 59 QKTKITQEQINSA----DSFRNVIKQFIRWIGDDYLLISWGHDDVLNLILNCKFNRIKID 114 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV-VNRHSAIGDAAAT 172 W R D+ + ++ + L+ +GV + N H A+ DA T Sbjct: 115 ---------WLKRNIDIQKQFSAIYHLPSGQRYSLENALALIGVEIDENLHRALTDAQYT 165 Query: 173 AFCFDMLRHTA 183 A F + Sbjct: 166 AKIFKSIFDKL 176 >UniRef50_B2UMX8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMX8_AKKM8 Length = 197 Score = 97.2 bits (241), Expect = 3e-19, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 59/190 (31%), Gaps = 32/190 (16%) Query: 5 LIVVDLETTGL-DYDTALPVEVG--LLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +D E+ G +T PV++G E + +I VE+ A +++G Sbjct: 13 FAAIDFESAGAARGETDQPVQIGIAACPRLEDEPELWTSYIAVEKPVLWS--ASQVHGIT 70 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L W E++ L G NPA + + R + Sbjct: 71 TEMLADA----PSFPSLWPEIRSRLGQAVVVGHNPATERKFLRR-FPGHGFGP------- 118 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--------VPVVNRHSAIGDAAATA 173 L A G++ + L ++ LG +P H A+ DA A+ Sbjct: 119 -------WLDTLALGRMCVPGLADYSLSSLCGALGLTCSVEALLPARRWHDALYDALASL 171 Query: 174 FCFDMLRHTA 183 L Sbjct: 172 LIVRFLVKEL 181 >UniRef50_C5BZW8 Exonuclease RNase T and DNA polymerase III n=6 Tax=Actinomycetales RepID=C5BZW8_BEUC1 Length = 283 Score = 96.8 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 54/184 (29%), Gaps = 4/184 (2%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ D ETTG+D V L+ + L ++ A I+G Sbjct: 11 PLVGFDTETTGVDVAHDRIVTAALVVRHGLQGLPQERTWIIDPGVEIPEAASAIHGVTTE 70 Query: 64 GLYREALTE--QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R +A G N ++D TI+ + V + +P +GR Sbjct: 71 HARRLGRPPAEALEEIAAALAAAIADGAAVVAFNASYDLTILEHELVRHHLPTLHERLGR 130 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L L A L +A GV H+A D AT L Sbjct: 131 RPDAVLDPLVLDRALDRFRPG--KRKLVDLAALYGVSTGELHAADVDVTATLDVLRALVG 188 Query: 182 TAAA 185 Sbjct: 189 RFPE 192 >UniRef50_B0KHB9 Exonuclease RNase T and DNA polymerase III n=3 Tax=root RepID=B0KHB9_PSEPG Length = 203 Score = 96.8 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 53/200 (26%), Gaps = 23/200 (11%) Query: 1 MAKQLIVVDLETTGL--------DYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-AAD 51 M++ + V D ETTG D V++ L L V + Sbjct: 1 MSELICVFDTETTGFPNFKAPSDHPDQPHIVDICALLYTPEGELVDSFEAMVRPDGWSIP 60 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTY 110 + I+G + E A + N +FD I+ + Sbjct: 61 NEVAVIHGITNELALEHGIPEAL---AIEGFLNIWNQAGLRVAHNVSFDDRIMRIALKRF 117 Query: 111 SMPFSPLTVGRVWHHRLA--DLAAYA----AGKLNIDPTELEGLDAVAERL----GVPVV 160 + T + + + V E L G +V Sbjct: 118 QDAWVAETFRDSPKFCTCQSTTSIVKCPPTEKMIAAGRGKQHKPPTVTEALKFFTGEDLV 177 Query: 161 NRHSAIGDAAATAFCFDMLR 180 H A DA A A + L+ Sbjct: 178 GGHRARPDAEACARVYFALQ 197 >UniRef50_Q934V3 Putative uncharacterized protein HCM2.0114c n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=Q934V3_SALTI Length = 185 Score = 96.8 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 20/183 (10%) Query: 8 VDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYERGL 65 VD+E+TGLD+ +E+ + + + + DPKA ++G L Sbjct: 8 VDIESTGLDFTSGHKIIEIAITRYELETQKHIDSLEMRFNPRRSIDPKAQAVHGISLEDL 67 Query: 66 YREALTEQQTAVAWGEVQDWLR-GNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRVW 123 TE A G++ ++ + N AFD + + +Y + Sbjct: 68 A----TEPLLADHAGKIAAYMGACSALVAHNGEAFDLPFIRHEFGSYGVKLP-------- 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLRH 181 + + + G + + L+ +A LG HSA+ D CF R Sbjct: 116 --DIPLVDSMLDGLWATEDGKRPRLEELAFSLGFTYDREKAHSALYDTDLMMQCFFKARE 173 Query: 182 TAA 184 Sbjct: 174 KYG 176 >UniRef50_B0DGJ1 Predicted protein n=4 Tax=Agaricales RepID=B0DGJ1_LACBS Length = 391 Score = 96.8 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 55/189 (29%), Gaps = 30/189 (15%) Query: 1 MAKQLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 + + + +D E G+ + A V L+N E L + V Q + + Sbjct: 116 LPGKYLAIDCEMVGVGLEGAESSLARVSLVNFYGAEMLD----VFVRQRERVVDYRTQWS 171 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + +V D L G D + Sbjct: 172 GIRDTDMMHAK----SFEEVQKQVADLLEDRILVGHAVHNDLKAL--------------- 212 Query: 119 VGRVWHHRLADLAAYAAGKLN-IDPTELEGLDAVAER-LGVPV-VNRHSAIGDAAATAFC 175 + H + + ++ L + ++ L + + HS++ DA AT Sbjct: 213 --LLSHPWTSTRDTQYYAYKGGLTKSKRIALRNLVKQELDLVIQEGEHSSVTDARATMAV 270 Query: 176 FDMLRHTAA 184 + + R Sbjct: 271 YRLHRKDWE 279 >UniRef50_C5CA98 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CA98_MICLC Length = 381 Score = 96.8 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 45/163 (27%), Gaps = 19/163 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYY 61 +D ET + P VG + V G + + DP+ + I+G Sbjct: 12 DFTAIDFET--ANGFRGSPCAVGAVRVRDGVMVDRAEWLIRPPVGFDRFDPRNVRIHGIT 69 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E + + A + E+ D++ + A N FD ++ L Sbjct: 70 EDRVLDA----PRFAQVYDELADFVGTDVLAAHNAGFDVGVIESGLEVSGRDVPGLEF-- 123 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + + L + A G H Sbjct: 124 --------VCTLVLARRVY-DLPSYALPSAAREAGFTPGRHHD 157 >UniRef50_C9YB77 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB77_9BURK Length = 307 Score = 96.8 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 62/174 (35%), Gaps = 27/174 (15%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVD----TGESLYFVPHI--TVEQLAAADPKAME 56 K ++V+D ETTGLD +E+ LL VD TG + V + A P+ + Sbjct: 37 KTILVLDTETTGLDQAKEKIIELALLRVDIDTATGLPVGPVQVYDGLEDPGKAIPPEVVA 96 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 I G + + +AL E + A + N FD V + + Sbjct: 97 ITGIQDADVQGQALDEARVAELMQ------GVDVVIAHNAGFDRPFVESRLPAF------ 144 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 L ++A L+++A+ LG+ + H A D Sbjct: 145 --------AALPWACSFADLDWKSLGRSSAKLESLAQELGL-FYDAHRAEMDCH 189 >UniRef50_A2BVT4 Possible DNA polymerase III, epsilon subunit n=8 Tax=Prochlorococcus marinus RepID=A2BVT4_PROM5 Length = 270 Score = 96.8 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 24/188 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVD--TGESLYFVPHITVEQLAAADPKAMEINGY 60 ++++++D ETTGLD + +E+G + + L V + + +A +NG Sbjct: 47 EKILILDTETTGLDENKDEIIEIGCILFHVTSKSVLSQVSFLFPV----SSNEAEHVNGI 102 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + +Q + N FD + +P Sbjct: 103 SAE----VSNIKQPWEEGLNFFLKLVDCADLIVAHNVEFD----KKWFGKGRLPNLE--- 151 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + W L D+ L + +A +PV + H A+ D + F Sbjct: 152 -KNWICSLEDINWSFQKNLKN----RPSVTDLALSFSIPVWSLHRALSDCFYISEVFKKC 206 Query: 180 RHTAAAHL 187 L Sbjct: 207 -ENLEELL 213 >UniRef50_UPI0001925A39 PREDICTED: similar to RNA exonuclease 4 n=1 Tax=Hydra magnipapillata RepID=UPI0001925A39 Length = 347 Score = 96.8 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 55/187 (29%), Gaps = 30/187 (16%) Query: 6 IVVDLETTG--LDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 I +D E G LD ++ V ++N V + E +G + Sbjct: 131 IALDCEMVGVGLDGKESVLARVSIVNSLGECLYDK----FVRTTESVVDYRTEFSGVRPQ 186 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L EV D ++G G D ++ Sbjct: 187 NLKNA----PDYETVQKEVADIIKGRVLVGHALQNDLKVLM---------------LSHP 227 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNRHSAIGDAAATAFCFDMLR 180 + D + Y ++ + T+ L +A +L + HS+I DA A F + Sbjct: 228 RKFIRDTSKYKFFQVAL-KTKRPALRKLAAQLLNENIQ-DGEHSSIEDAQAAMKLFQKYK 285 Query: 181 HTAAAHL 187 L Sbjct: 286 KDWEKTL 292 >UniRef50_A7RIG2 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RIG2_NEMVE Length = 277 Score = 96.8 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 46/196 (23%), Gaps = 30/196 (15%) Query: 5 LIVVDLETTGL--DYDT--ALPVEVGLLNVDTGE-SLYFVPHITVEQ--LAAADPKAMEI 57 V+D E T + + +E + V+ + + E+ Sbjct: 88 YCVIDFEATCEKENPEGYQHEIIEFPAVLVNAKTLEIEGEFQQYCKPLLKPRLTKFCQEL 147 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLR--------GNTFAGSNPAFDSTIVARQRVT 109 G + + + WL+ P + Q Sbjct: 148 TGISQETVDK----SDNFPQVLDNFHIWLKERGIGTTHKFAVVTDGPWDIQRFLVTQCEI 203 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGD 168 ++ + + N + L + E LG+ R HS + D Sbjct: 204 CNINLPKWSRKYI---------NLRKHYRNFYKMKC-KLSEMLENLGLEFEGRPHSGLDD 253 Query: 169 AAATAFCFDMLRHTAA 184 + A + Sbjct: 254 SRNIARILIKMLKDGG 269 >UniRef50_A3W6U6 Probable DNA polymerase III (Epsilon chain) protein n=1 Tax=Roseovarius sp. 217 RepID=A3W6U6_9RHOB Length = 193 Score = 96.8 bits (240), Expect = 4e-19, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 28/182 (15%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 VD+E G +E+G++ +D + H P I+G + Sbjct: 6 AVDVE--GNGATPPEIIELGIVEMDGLRLTGRIKHWQFRPELEITPIVSRIHGITNEDVA 63 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 ++ WL G G N + +++ + + Sbjct: 64 DA----PPFDDVVDDILLWLEGAPIVGHNVRVELEALSKVLPGWKPAAAY---------- 109 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPV--------VNRHSAIGDAAATAFCFDM 178 + + E GL+ + + LG+ HSA DAA +A + Sbjct: 110 ----DTLKVARRLLPYQEKFGLERLGDALGLKDAASKAVGGGAAHSAPYDAAMSAILLER 165 Query: 179 LR 180 L Sbjct: 166 LL 167 >UniRef50_UPI000038277F COG0847: DNA polymerase III, epsilon subunit and related 3''''-5'''' exonucleases n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038277F Length = 187 Score = 96.4 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 55/169 (32%), Gaps = 7/169 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ +D ETTGLD D V L+ + G + ++ +A I+G Sbjct: 10 PLLGLDTETTGLDVDVDRVVTAALVLREPGATHVRTW--LLDPGVEIPAEATGIHGITNA 67 Query: 64 GLYREALTEQQTAVAWGEVQ--DWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + G N AFD I+ + V + +P +GR Sbjct: 68 HATAHGSAPAVALDEIATLVVDAQRDGVPLVAYNAAFDLAILDTELVRHGLPTLAARLGR 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDA 169 L L A D L + R V V R H+A GD Sbjct: 128 PVRPVLDPLVLDRAWDPARDG--KRRLVDLCARYEVLDVGRLHTADGDV 174 >UniRef50_Q68BL2 DNA helicase RecG n=2 Tax=cellular organisms RepID=Q68BL2_NANBA Length = 1341 Score = 96.4 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 22/192 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IV DLETTGL + PVE+ +G F I + + KA E+ G Sbjct: 137 IVFDLETTGLSKEKDHPVEIAAEAPLSGR--TFSTLIRLADGMSISTKAEEVTGITTAQC 194 Query: 66 YREALTEQQTAVAWGEVQDWLR----------GNTFAGSNPA-FDSTIVARQRVTYSMPF 114 + A+ ++ G N FD ++ + + Sbjct: 195 KD--PSLPTFPQAYASFLRFIEAEMEDAAPGAFPLLVGHNIERFDLPLLLHCAKRFDVAA 252 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATA 173 + L L+A + E L + L + H A D T Sbjct: 253 P------LSARILDTLSASRSLLTGSAKPEAFNLTTLYGHLTRKEAIAAHRASADVKMTV 306 Query: 174 FCFDMLRHTAAA 185 L +A Sbjct: 307 AVLHALLEHSAG 318 >UniRef50_Q4S474 Chromosome undetermined SCAF14743, whole genome shotgun sequence. (Fragment) n=2 Tax=Tetraodon nigroviridis RepID=Q4S474_TETNG Length = 303 Score = 96.4 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 48/182 (26%), Gaps = 27/182 (14%) Query: 2 AKQLIVVDLETTGLDYDTA--LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 + + +D E G + +++ D ++ +G Sbjct: 131 PSKYLALDCEMVGSGPKGSVSQLGRCSVVSYDGDVVYDK----FIKPPVPVTNYRTRWSG 186 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 R L A A E+ L G G D +++ P Sbjct: 187 IRPRNLANAT----PYAAARKEILRLLAGKVVIGHAVHNDFKVLSYCHP----PALTRDT 238 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV---NRHSAIGDAAATAFC 175 R+ K + TE L + + + HS++ DA AT Sbjct: 239 SRIP---------LLNAKAGLAATECASLKRLTKAIFNRDIQTGKGGHSSVEDARATMEL 289 Query: 176 FD 177 + Sbjct: 290 YK 291 >UniRef50_D2EFA4 Exonuclease RNase T and DNA polymerase III n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFA4_9EURY Length = 199 Score = 96.4 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 24/195 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +IVVD+ET+G + +G ++ E F +E+ +A+ +NG+ + Sbjct: 1 MIVVDIETSGTSPYNHSILSIGAVDFSNPERQ-FYQECQIEKDKEYTEEALNVNGFKKEE 59 Query: 65 LYREALTEQQTAVAWGEVQDWL---RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L ++ E W+ + T G N FD+ + Y++ FS Sbjct: 60 LTD--PKKKTLESVLNEFIVWIQPVKDKTIGGHNVNFDANFLNYSFKKYNINFS------ 111 Query: 122 VWHHRLADLAAY----AAGKLNIDPTELEGL----DAVAERLGVPVVN-RHSAIGDAAAT 172 + HR+ D + + PT+ E D V G+P H+A+ A Sbjct: 112 -FGHRVIDTHSLVYASLLSRHIDPPTKNEKTDINSDYVFNYAGLPPEPKPHNALNGAKME 170 Query: 173 AFCFDMLRHTAAAHL 187 A L L Sbjct: 171 AEALSRLI--LGRKL 183 >UniRef50_A5FAP0 Exonuclease, RNase T and DNA polymerase III n=3 Tax=Flavobacteriaceae RepID=A5FAP0_FLAJ1 Length = 181 Score = 96.4 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 61/189 (32%), Gaps = 21/189 (11%) Query: 2 AKQLIVVDLETT---GLDYDT--ALPVEVGLLNVDTG-ESLYFVPHITVEQLAA-ADPKA 54 ++I++DLE T G+ +E+GL +D+ + I ++ + P Sbjct: 4 TDKIIIIDLEATCWQGVVPKGQQNEIIEIGLAVLDSQTGEITKNKGILIKPQRSTVSPFC 63 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQ-DWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 E+ + L + ++ A + ++ S +D ++ +Q ++ +P Sbjct: 64 TELTTITQDLLDKNGVS---FEEAVNLLIDEYNPDLYTWASYGQYDLNMLTKQCKSFGIP 120 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAAT 172 + G++ + L +P+ H I DA Sbjct: 121 YPMGEEHINVKEHF---------AEKFGLKRSTGMNGALQLLNIPLEGTHHRGIDDAKNI 171 Query: 173 AFCFDMLRH 181 A Sbjct: 172 AKIMHWCLK 180 >UniRef50_Q0SR27 Exonuclease family protein n=9 Tax=Clostridium perfringens RepID=Q0SR27_CLOPS Length = 300 Score = 96.4 bits (239), Expect = 5e-19, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 35/198 (17%) Query: 5 LIVVDLET------TGLDYD-------------TALPVEVGLLNVDT--GESLYFVPHIT 43 +++DLE T + +E+G + ++ E F +I Sbjct: 3 YVIIDLEFNNMQNITKFYPNIYNEQKDLKELDSYNEIIEIGAIKLNKFMQEVDEFKTYIK 62 Query: 44 VEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV 103 +PK ++I G E L A ++D++ + S D + Sbjct: 63 PSVFKVLNPKIIDITGITEDHLKDGIK----FEDAMDNLKDFIGEDDILCSWATDDIVHI 118 Query: 104 ARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR- 162 +S W + D+ Y L + L E L + + Sbjct: 119 VNNAKYHSYKN------ISWIKKYIDIQKYCTKILAHK--KSLSLKHALEELKIKIDKSK 170 Query: 163 -HSAIGDAAATAFCFDML 179 H A+ DA TA F L Sbjct: 171 LHDALNDAVYTAEVFKRL 188 >UniRef50_A1ZST4 3'-5' exonuclease eri-1 n=2 Tax=Bacteria RepID=A1ZST4_9SPHI Length = 185 Score = 96.4 bits (239), Expect = 5e-19, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 51/180 (28%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALP---VEVGLLNVDTGE--SLYFVPHITVEQLAAADPKAMEING 59 ++VDLE T + +E+G + + F + ++ Sbjct: 3 YVIVDLEATCWETRENRANETIEIGAVCIGNEGKWVDEFDTFVKPVTHPVLSEFCTQLTS 62 Query: 60 YYERGLYREALTEQQTAVAWGEVQDW-LRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + + L + + + S +D + +++P L Sbjct: 63 ITQEMVDDAPLFPEALDDFQQWINNCANGDQYVLCSWGYYDRVQFKNDCLLHNLPTQWLA 122 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFD 177 H+ AD+ G+ ++ G+ + H I DA A F Sbjct: 123 SHISLKHQYADIKNMR---------RPIGMKKALQKEGLFLSGTHHRGIDDAKNIADIFL 173 >UniRef50_C0VSD3 DNA polymerase III subunit epsilon n=3 Tax=Actinomycetales RepID=C0VSD3_9CORY Length = 310 Score = 96.0 bits (238), Expect = 5e-19, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 27/190 (14%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAAD---PKAMEING 59 ++ + +D ET + VG+ D L + + D P + ++G Sbjct: 2 QEFVSIDFET--ANEQRRSACAVGMARFDAEGKLADTYYTLLHPHPDVDYFNPVNVWVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + ++ Q + +V ++ N AFD +++ Y P Sbjct: 60 ITQDDVHDA----PQWSDVADDVALFIGERPIVAHNMAFDGYVLSDLDSLYGAPPLEN-- 113 Query: 120 GRVWHHRLADLAAYAAGKLNI-DPTELEGLDAVAERLGV----PVVNRHSAIGDAAATAF 174 + + D E + LD + G ++ H A DA A Sbjct: 114 --------RRFCTVRLARKILADKLERKTLD---QVFGYYFPSEPLDHHHAGFDAQAAGM 162 Query: 175 CFDMLRHTAA 184 F ++ Sbjct: 163 IFARMQEEFG 172 >UniRef50_A9EUY2 Predicted exonuclease n=3 Tax=Myxococcales RepID=A9EUY2_SORC5 Length = 191 Score = 96.0 bits (238), Expect = 5e-19, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 50/182 (27%), Gaps = 24/182 (13%) Query: 5 LIVVDLETT----GLDYDT-ALPVEVGLLNVDTGE---SLYFVPHITVEQLAAADPKAME 56 +V+DLE T G + +E+G + VD + + Sbjct: 8 FLVIDLEATCDEEGRIPERIMEIIEIGAVLVDGATLEPVSELATFVRPVIRPRLTEFCTK 67 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFS 115 + + + A + ++ S +D + +P Sbjct: 68 LTTITQADVDAA----PTFPEAIAALGRFVGQREALFCSWGDYDRKQFEIDAARWGVPLP 123 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAF 174 + + T+ G+ + ERLG+P+ H I DA A Sbjct: 124 LQGHMNIK----------KRFSAALGVTQRYGMASALERLGLPLHGTHHRGIDDARNIAR 173 Query: 175 CF 176 Sbjct: 174 IL 175 >UniRef50_C9P6S7 DNA polymerase III epsilon subunit n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P6S7_VIBME Length = 237 Score = 96.0 bits (238), Expect = 5e-19, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 17/181 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYERG 64 +V+D ET+GL+ + VG++N+ H VE + + +N Sbjct: 53 VVLDFETSGLNPRQDEILSVGMINIHYPVMSLATAQHYYVESEHCIEAETAVVNHIVPET 112 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS-MPFSPLTVGRVW 123 L + + L G + + + +P + Sbjct: 113 LLGGISRH----ELIECLVESLSGKVVIAHGAEIEKQFLRQLLSLEDSLPLPLI------ 162 Query: 124 HHRLADLAAYAAGKLNIDP--TELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D + L + E+ G+P H+A D AT F L Sbjct: 163 ---FLDTMRLERSLIKYRGIMYPDLRLAHIREQKGLPPYLAHNAFADVVATGELFLALVE 219 Query: 182 T 182 Sbjct: 220 E 220 >UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 Tax=Clostridium RepID=A6LV05_CLOB8 Length = 976 Score = 96.0 bits (238), Expect = 6e-19, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 23/180 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +I +D+ETTGLD + +E+G + V G + I ++ Sbjct: 10 DNVIYLDIETTGLDETCSEIIEIGAVKVKNGVITTYNTLIRPRGRVPISIYSLC------ 63 Query: 63 RGLYRE-ALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L L+ + EV ++L N F+ ++ Sbjct: 64 SDLKEADLLSARSLNSIKQEVLEFLEDLPLICHNGNFERKFLSFYIPEIKNTI------- 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + L+++ + + + H + D+ T + L Sbjct: 117 --------MDSMELAIILEPWRKEYNLNSLIKEITNLNKDELHRGLSDSIDTLKVVNSLL 168 >UniRef50_A7VSN5 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VSN5_9CLOT Length = 293 Score = 96.0 bits (238), Expect = 6e-19, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 56/190 (29%), Gaps = 19/190 (10%) Query: 4 QLIVVDLETTGLDYDT-----ALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAME 56 + +++DLE G +E G + V+ + + V+ K Sbjct: 2 EFVILDLEWNGTYSKRKSGFFNEIIEFGAVKVNDRLCVEDTFSVVVKPQIGKKLSSKVKN 61 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 + L A + + +L + ++ + + Sbjct: 62 LTNISSEEL----GLGVTYTRAVSKFKKFLGNAVLMTWGTSDILALMENHQYYWGTDRL- 116 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAF 174 + +L ++ ++ + + GL A+ LG+ V H A+ D+ Sbjct: 117 -----DYIEGYVNLQSFCERRVYYERGKQMGLSTAAQLLGIDVQGMEHHRALDDSLLALA 171 Query: 175 CFDMLRHTAA 184 CF L Sbjct: 172 CFRRLYDEEE 181 >UniRef50_D1INZ9 Whole genome shotgun sequence of line PN40024, scaffold_84.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1INZ9_VITVI Length = 520 Score = 96.0 bits (238), Expect = 6e-19, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 41/188 (21%), Gaps = 19/188 (10%) Query: 5 LIVVDLETT---GLDYDTALPVEVGLLNV---DTGESLYFVPHITVEQLAAADPKAMEIN 58 +V+D E T G + +E + V F ++ ++ Sbjct: 246 FVVIDFEATCDKGKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQILSDFCKDLT 305 Query: 59 GYYERGLYREALTEQQT---AVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 G + + R + + + ++ + + Sbjct: 306 GIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTNFAVVTWSNWDCRVMLESECRFKKIRKP 365 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAF 174 + L E G+ H + DA TA Sbjct: 366 ---------PYFNRWINLKVPFREVFGGVWCNLKEAVEMAGLAWQGRAHCGLDDAKNTAR 416 Query: 175 CFDMLRHT 182 L H Sbjct: 417 LLAFLMHR 424 >UniRef50_A2R5A3 Contig An15c0120, complete genome n=2 Tax=Fungi/Metazoa group RepID=A2R5A3_ASPNC Length = 801 Score = 96.0 bits (238), Expect = 6e-19, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 41/179 (22%), Gaps = 29/179 (16%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ +D E + + + ++ D L V+ +G + Sbjct: 275 RDVLALDCEMCITEGGQSELTRISMVRWDGEVVLDE----LVKPQRPIIDYLTRFSGITK 330 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L T + G + D + + Sbjct: 331 ELLDPVTTTLADVQQKLLSLL--TPRTILVGHSLNSDFNALK-----------------L 371 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVVN---RHSAIGDAAATAFCFD 177 H + D L + + LG + H +I DA A Sbjct: 372 THPFIVDTTFIYPHPRGPPL--KCSLRWLTQKYLGKEIQKGQTGHDSIEDARAVLELVK 428 >UniRef50_C0VV73 DNA polymerase III epsilon subunit n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VV73_9CORY Length = 449 Score = 96.0 bits (238), Expect = 6e-19, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 18/162 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL--AAADPKAMEINGYY 61 + +D+ET + D +E+G+ V G + + I+G Sbjct: 104 DFVAIDVET--ANDDWGSIIEIGVTKVLNGLVEEQATWRCTPPPGMEDFLDENIAIHGIR 161 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E A + V+++ N FD T +AR +P G Sbjct: 162 PEDIEGE----PSFAQRYELVKEFTGELPMVSHNAQFDFTALARACHASHCAAAPNEFG- 216 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRH 163 + A + L V LG+ + + H Sbjct: 217 ---------CSLALSRSRDLGFATNRLPDVCRGLGIALEHHH 249 >UniRef50_C4QB28 3'-5' exonuclease eri1-related n=2 Tax=Schistosoma mansoni RepID=C4QB28_SCHMA Length = 232 Score = 95.6 bits (237), Expect = 6e-19, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 33/202 (16%) Query: 5 LIVVDLETTGLD---YDTALPVEVGLLNVD---TGESLYFVPHITVEQLAAADPKAMEIN 58 ++D E+T + A +E ++ +D F + + + Sbjct: 32 FFILDFESTCFEDDIKKPAEIIEFPVVILDSVTGTLIDSFQSFVKPTENPELSVFCSNLT 91 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGN---------------TFAGSNPAFDSTIV 103 G + + AV + + WLR F ST + Sbjct: 92 GIQQCDVENA----PTLAVVLRKFEHWLRKAKENLGCSFKGQPTSAIFVTWTDWDISTCL 147 Query: 104 ARQRVTYSMPFSPLTVGRVWHHRL--ADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 + +P + R+ + L ++ G+ L +G+ Sbjct: 148 WDECRRKKLPLPGDMLNRIDLKAIFQQWLGSHKIGQKWRGG-----LKDALNLIGLHFEG 202 Query: 162 R-HSAIGDAAATAFCFDMLRHT 182 R H I DA T+ L Sbjct: 203 RPHRGIDDARNTSRLLLHLLSK 224 >UniRef50_Q81AM4 DNA polymerase III, epsilon chain n=71 Tax=Bacillus RepID=Q81AM4_BACCR Length = 281 Score = 95.6 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 54/180 (30%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDY----DTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEING 59 IV D+E D + V++G + ++ G + V+ A ++ G Sbjct: 7 FIVFDIERN-FRPYKSEDPSEIVDIGAVKIEIGTMKIIEEFSELVKPSARLTRHTTKLTG 65 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 ++ L ++ + ++ + S D ++ Y + + Sbjct: 66 ITKKDLMG----VEKFPQIIEKFIQFIGEGSIFVSWGKEDYRFLSHDCTLYGVECPSIEK 121 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDM 178 DL + L E+L + +H A+ DA TA Sbjct: 122 ENR-----IDLQKFVFQAYEELFEHTPSLQFAVEQLALTWEGKQHRALADAENTANILLR 176 >UniRef50_Q8DQ14 DNA polymerase III, epsilon chain n=57 Tax=Streptococcus RepID=Q8DQ14_STRR6 Length = 208 Score = 95.6 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 20/189 (10%) Query: 1 MAK--QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M + I DLE ++V + G + V + Sbjct: 13 MERLEDYIAFDLEFN-QHEGQTHLIQVSAVRFRDGREIDA-YDSYVHTSVPLKSFINGLT 70 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPL 117 G L E Q+++ G N A D I+A + + +S Sbjct: 71 GITAETLKDA----PPVEKVLEEFQEFVGSLLMIGYNAAKSDLPILAE----HGLDYSQQ 122 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ ++ ++ L VA LG H+++ DA TA ++ Sbjct: 123 YKVDLYDEAFERRSS------DLHGIANLKLQTVASFLGFQ-GQSHNSLEDARMTARVYE 175 Query: 178 MLRHTAAAH 186 + A Sbjct: 176 SFLESDQAR 184 >UniRef50_D1N0X4 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0X4_9BACT Length = 268 Score = 95.6 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 6/128 (4%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + L+V D+E+TG+ VE+ +L + + P A I+G Sbjct: 7 LERPLVVFDIESTGVMPQRDRIVEIAVLKIFPDGHT-QNTVRRLNPEMPIPPGATAIHGI 65 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTV 119 + + + ++ ++ AG N FD ++ + F Sbjct: 66 SDADVADC----PTFLLIAEKLFRYIEDCDLAGYNITGFDIPMLEAEFKRAGFTFKVDDR 121 Query: 120 GRVWHHRL 127 + + + Sbjct: 122 KVIDAYNI 129 >UniRef50_Q2H620 Putative uncharacterized protein n=2 Tax=Sordariomycetes RepID=Q2H620_CHAGB Length = 697 Score = 95.6 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 47/183 (25%), Gaps = 32/183 (17%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +Q++ +D E + L++ D L V+ + +G + Sbjct: 295 RQVLALDCEMCMTGEAEYSLTRISLVSWDGEVVLDE----LVKPDKPITNYVTQFSGITK 350 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + T + ++ G + D + + Sbjct: 351 EMIDPVTTTLKDIQTRLLDIL--HPRTILVGHSLDSDLKAMQ-----------------L 391 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVV------NRHSAIGDAAATAFC 175 H + D + P + L +A + L V + H +I DA Sbjct: 392 AHPFIVDTSILFPHPRG-PPLKS-SLKFLALKYLNREVQKGDGTIHGHDSIEDAKTCLDL 449 Query: 176 FDM 178 Sbjct: 450 VKK 452 >UniRef50_A1U017 Exonuclease, RNase T and DNA polymerase III n=2 Tax=Marinobacter aquaeolei VT8 RepID=A1U017_MARAV Length = 279 Score = 95.6 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 51/187 (27%), Gaps = 23/187 (12%) Query: 4 QLIVVDLETTGL-----------DYDTALPVEVG-LLNVDTGESLYFVPH-ITVEQLAAA 50 +++VDLE T +E G L TGE L + + Sbjct: 12 PILIVDLEATCWESSRLPNGERQSIGNMEIIEFGCALATRTGELLDSRSFLVRPVRNPDL 71 Query: 51 DPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY 110 + G + + A + A E + S +D + + + Sbjct: 72 SAFCRSLTGISQAMV-NAAPPYPEVVRALDEWLGQPAESLIWCSWGNYDRHHIQAESEAH 130 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDA 169 + L+ + R+ + + + GL + + R H + DA Sbjct: 131 GIAPRFLSCPHLNLKRI--------WRRSTGQKKKTGLASALAFHNLAFEGRPHRGVDDA 182 Query: 170 AATAFCF 176 Sbjct: 183 RNIVRLL 189 >UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=cellular organisms RepID=B7AB83_THEAQ Length = 1684 Score = 95.6 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 14/183 (7%) Query: 1 MAKQ--LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M + +DLE T D + A +E+ + F ++ + + D +A I Sbjct: 1 MNAPSFFVALDLEATSPDPEEAEILELAAQDSQGR---TFHRYLATNKPLSKDHEAFRIT 57 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPL 117 RE + ++ A E D+L G + G N +D ++ R + P Sbjct: 58 QIPFEEYEREKVPPER---ALREFLDFLGGRSLLGHNLLRYDLPLLERALGEVGLNLPPE 114 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPVVNRHSAIGDAAATAFCF 176 + RLA L + D L + L + H A D AT Sbjct: 115 AYRALDTLRLAHLV----FPIPKDGLAGYRLGDLYHYLTQEELEGAHRAATDVGATWRIL 170 Query: 177 DML 179 + L Sbjct: 171 EAL 173 >UniRef50_B8HHY2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HHY2_ARTCA Length = 197 Score = 95.6 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 53/167 (31%), Gaps = 18/167 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPKAMEINGYY 61 + +D E + + ++GL+ V G H + + + ++G Sbjct: 6 DFVAIDFEL--ANAKHSSICQIGLVKVRDGVLGKTHTHFVMPPAGQQNFGHRQIAVHGIT 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + + ++ + N + +++ + + P T Sbjct: 64 RRMIDGADG----WDLMLPRLEAFTGDLPLVAHNVVAERSMIRQTTEAIGLTPPPFTFY- 118 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 A +L++ E L+ + E LG+P + H A D Sbjct: 119 ---------CTQRAAQLHLPGQESYRLNMLVESLGLPPLQHHDAGED 156 >UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T43_SULDN Length = 234 Score = 95.6 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 33/193 (17%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 LI +D+ETTGL+ + +G++ V F + V + KA IN Sbjct: 2 LIFLDVETTGLE-NGDKICSIGIICVSETAI--FSKYELVNEGKKISSKASSINHITNEM 58 Query: 65 LYREALTEQQ-TAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + T E + + +T N FD ++ + G +W Sbjct: 59 IKDKPKFKDSKTWEILHE--NNNQSSTIIAHNVNFDLKMLLQ-------------SGFLW 103 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN------------RHSAIGDAAA 171 ++ D K I E L + L + H+A+ DA Sbjct: 104 QGKVVDT--LRVTKHLIPECEEFSLQFLRYELKLYKDEKKEAAKYSAEISAHNALSDALH 161 Query: 172 TAFCFDMLRHTAA 184 ++ L Sbjct: 162 VKLLYEYLLEIKE 174 >UniRef50_A7ERC9 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A7ERC9_SCLS1 Length = 772 Score = 95.6 bits (237), Expect = 8e-19, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 46/182 (25%), Gaps = 33/182 (18%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +++ +D E D + + +++ D L V+ + +G E Sbjct: 325 REIFAMDCEMCMTDKNEFSLTRISIVSWDGSVVLDE----LVKPEKPIIDYLTQYSGITE 380 Query: 63 RGLYREALTEQQTAVAWGEVQD-WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + G + D + Sbjct: 381 SMLA---PVTTTLQDIQKRLVKLFHSRSILIGHSLDSDLKALK----------------- 420 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVVN-----RHSAIGDAAATAFC 175 + H + D A P + L +A + LG + H + DA Sbjct: 421 LTHPYIIDTAVIYPHPRG-PPLKS-SLKWLAQKYLGKEIQKGHGATGHDSTEDARTCLDL 478 Query: 176 FD 177 Sbjct: 479 VK 480 >UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9D3J4_9RHOB Length = 240 Score = 95.6 bits (237), Expect = 8e-19, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 51/193 (26%), Gaps = 36/193 (18%) Query: 7 VVDLETTGL-DYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D ETTG + + A +E G ++VD + + P M ++ + Sbjct: 11 VIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKPSEPIPPVTMAVHHITDTD 70 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAG-SNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + W D R + N F+ Sbjct: 71 VADA----PPPGQVWQPFWDGCRSEDYVAAHNAKFEQYF-------------------HD 107 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV----------VNRHSAIGDAAATA 173 + + Y + + G A+ LG+ H A+ DA TA Sbjct: 108 GNGRKWICTYKSALVVWPDAPSHGNQALRYWLGIDNIHPSFDRDAAQPPHRALPDAYVTA 167 Query: 174 FCFDMLRHTAAAH 186 L Sbjct: 168 HILLELLKHKTPE 180 >UniRef50_C9KKS1 Putative DNA polymerase III subunit epsilon n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKS1_9FIRM Length = 241 Score = 95.2 bits (236), Expect = 8e-19, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 55/184 (29%), Gaps = 13/184 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++ DLE G +E+G + + G V + + ++ G + Sbjct: 41 VVSFDLEMAGAFP--DDIIEIGAIRLPLGNDKIEVFRRLIRPRTFINRTVRDMTGLTKED 98 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFA-GSNPAF-DSTIVARQRVTYSMPFSPLTVGRV 122 L ++ V E D++ G D + + + Sbjct: 99 LRDKS----TLDVILPEFLDFVDPEDLVVGHAIGDNDLLSINLALIRMNHKN---GTNIR 151 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + R D + + + L A+ E G +H A DA A+ + L Sbjct: 152 FCPRYLDT--VRLAQQLLPKRKKYNLIALLESFGWHSKKKHRAFEDALASYVLLECLLED 209 Query: 183 AAAH 186 +A Sbjct: 210 SAEK 213 >UniRef50_A0R7K3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7K3_PELPD Length = 304 Score = 95.2 bits (236), Expect = 9e-19, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 62/171 (36%), Gaps = 28/171 (16%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVD----TGES--LYFVPHITVEQLAAADPKAMEING 59 + +D ETTG ++ + +E+G++ + TGE + + DP+ + G Sbjct: 48 LCIDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRIVDTYSGFEDPCRPLDPEVTAVTG 107 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLT 118 + L ++L + + + N FD + + R+ + +PF+ Sbjct: 108 ITDDMLAGQSLDDAAVGKIVSQ------ASLCFCHNCKFDRSFLERRFPEFEKLPFACTM 161 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 W + L L+ + + G ++ H A+ DA Sbjct: 162 SQIDWKNELVT---------------SRTLEYLLYKCGACFIDAHRALNDA 197 >UniRef50_Q2S4M8 Exonuclease, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S4M8_SALRD Length = 236 Score = 95.2 bits (236), Expect = 9e-19, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 16/174 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTG +E+G++ + H V LA A ++G + L Sbjct: 67 VFLDTETTGSGP-QDAVIELGVVAAQGEVLI----HTLVAPLAPVTRGARRVHGITDEEL 121 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 A V P +D ++ T ++ P T R+ Sbjct: 122 ADAPPF-PTVADRLDTVLA--DAECVWTFGPTYDRRML---LQTAALAECPETHRRIQDS 175 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAFCF 176 DL + E L A+RL V + + H A+ DA + Sbjct: 176 TWRDLQP--DATRVLGDAERVALTDAAKRLDVSIPTEGHHHRALYDAKLARRVW 227 >UniRef50_C5B5B3 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B5B3_METEA Length = 194 Score = 95.2 bits (236), Expect = 9e-19, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 56/194 (28%), Gaps = 19/194 (9%) Query: 2 AKQLIVVDLETT----GLDYD-TALPVEVGLL--NVDTGESLYFVPHITVEQLAAADPKA 54 +++ +D E T G + +E+G++ +V T E L + + Sbjct: 6 TDRILAIDTEWTCWEGGAPPGMRSEILEIGIVEADVATLEILREESWLVRPAYSEVSGYC 65 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 + G R + + A + D + + + + Sbjct: 66 ERLTGIAGDEARRFGRPLP---EVMRTLTKQFGPSRKALVSWGDDLGGIEAECRAFGVEN 122 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATA 173 V + L+A E LDA GVP R H A+ DA AT Sbjct: 123 PFRRELAVDFGLVHALSA--------GCRERPSLDAALAAEGVPFEGRRHRALPDALATM 174 Query: 174 FCFDMLRHTAAAHL 187 F L Sbjct: 175 RLFLAFAARQRPGL 188 >UniRef50_A7RWU1 Predicted protein n=2 Tax=Nematostella vectensis RepID=A7RWU1_NEMVE Length = 461 Score = 95.2 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 24/197 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D ETTGLD + +++ + + + +A +G E Sbjct: 155 TFVMFDTETTGLDTSNDVIIQLACASENGDPL---HSRYMFPGGRSIGSEATNAHGISEA 211 Query: 64 GLYREAL---TEQQTAVA------WGEVQDWLRGN--------TFAGSNPA-FDSTIVAR 105 + + + A E +L+ + FD ++ Sbjct: 212 FIDGSRVLLKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRLLIN 271 Query: 106 QRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDP--TELEGLDAVAER-LGVPVVNR 162 +++ ++ G V + + A + + + E L A+ GVP+ Sbjct: 272 CLKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSPFDSSFKKESLSALHGHLFGVPIDRP 331 Query: 163 HSAIGDAAATAFCFDML 179 H A DA A + + Sbjct: 332 HDAQADACALSKVLMKI 348 >UniRef50_Q22S54 Exonuclease family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22S54_TETTH Length = 567 Score = 95.2 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 52/191 (27%), Gaps = 33/191 (17%) Query: 4 QLIVVDLETTGLDYDT------ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 ++ +D E + V ++N + L V ++ Sbjct: 398 PIVAIDCEMVQCEASQKDGFPTQELARVSIVNYNGHVLLD----TYVRPQKKIKNYLTKV 453 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + ++ + L+ G + D + + + Sbjct: 454 SGITFTHIKNA----PTYPEVKNKIFEILKDKIIVGHSVQHDLSSIKFE----------- 498 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPV-VNRHSAIGDAAATAFC 175 + D++ Y K + + L + ++ LG+ H +I DA A Sbjct: 499 ---PPKDKMIRDISNYKELKQS---GKKVSLKKMVKQELGITFQEGSHDSISDARAALLI 552 Query: 176 FDMLRHTAAAH 186 + + Sbjct: 553 YKKYQKQIDQE 563 >UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2R5F8_ASPNC Length = 298 Score = 95.2 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 40/171 (23%), Gaps = 15/171 (8%) Query: 30 VDTGESLYFV---PHITVEQLAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWL 86 ++ + P A+ I G + + E A + Sbjct: 121 FKGEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVP 180 Query: 87 RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNID----- 141 + +N FD + + + R L A Sbjct: 181 KTCILGYNNVRFDDEVTRNIFYRNFYD-PYAWSWQHDNSRWDLLDVMRACYALRPEGINW 239 Query: 142 -----PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAAAHL 187 L+ + + G+ N H A+ D AT L T L Sbjct: 240 PENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIA-MAKLVKTRQPRL 289 >UniRef50_B5MA46 Putative DNA polymerase III, epsilon subunit n=5 Tax=unclassified Myoviridae RepID=B5MA46_9CAUD Length = 184 Score = 95.2 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 49/183 (26%), Gaps = 21/183 (11%) Query: 5 LIVVDLETTGLDY-------DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 V D ETTGL + +E + D + L V I + +I Sbjct: 3 FAVWDTETTGLPFHQRVSLRKQPRIIEFAGVITDGEKILDEVEFIC-NPGIVIEEIITKI 61 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSP 116 G L + +V+D+ N FD ++ Sbjct: 62 TGLKNEDL----IKHPSFLDQRQKVRDFFSRADANIAHNLPFDKFMLTCDLARGKFGLDE 117 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + + + A + L + E P V +H A+ D Sbjct: 118 VNFPSLDICTVEESAPLFGHR--------MRLQHLYEHYCGPYVQKHRALDDVRLLHEVC 169 Query: 177 DML 179 + Sbjct: 170 KRM 172 >UniRef50_Q4SXK5 Chromosome 15 SCAF12379, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SXK5_TETNG Length = 283 Score = 95.2 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 63/216 (29%), Gaps = 56/216 (25%) Query: 4 QLIVVDLETTGLDYDT-ALPV-EVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++ +D E G+ D + V L+N V+ ++G Sbjct: 88 KVVAIDCEMVGVGPDGEDSILARVSLVNQFGKCIYDK----YVKPTERVTDFRTAVSGIR 143 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + ++ EV D L+G T G D I+ + Sbjct: 144 PQDIK----SGEEVKTVQREVADILKGRTVVGHAIHNDLKIL---------------LLD 184 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPV-VNRHSAIG------------ 167 ++ D Y + + + L + E L V V HS++ Sbjct: 185 HPKKKIRDTQKYKPFRKAV-QSSRPSLKVLCREILNVKVQEGEHSSVSAFICTSADASVA 243 Query: 168 ----------------DAAATAFCFDMLRHTAAAHL 187 DA AT + M++ A + Sbjct: 244 GCSLSTDLLLCLHQVQDAQATMRLYTMVKKQWEAEI 279 >UniRef50_A1VSD3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VSD3_POLNA Length = 550 Score = 94.9 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 58/186 (31%), Gaps = 18/186 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTGL VE+G + + Q P + ++GY Sbjct: 6 WVLIDTETTGLTVPIF-VVELGAQRMRGWLPEGSPFRRLLNQNLDIPPASSRVHGYTREI 64 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDS-TIVARQRVTYSMPFSPLTVGRVW 123 L R+ AV + + + G N +D ++ + + Sbjct: 65 LERDGEPA---AVVYRDFAAYAGGLPVVAFNLEYDLDEVLLPEWKRLGITPMVTAGF--- 118 Query: 124 HHRLADLAAYAAGKLNIDPTE--LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LR 180 A + +DP L + + +P H+A+GD A LR Sbjct: 119 -------CALRLAQRLLDPVPAGNCKLQTLRQYYRLPERGAHTALGDVETVADLLAKVLR 171 Query: 181 HTAAAH 186 A Sbjct: 172 PIAEQR 177 >UniRef50_O16312 Putative uncharacterized protein n=1 Tax=Caenorhabditis elegans RepID=O16312_CAEEL Length = 594 Score = 94.9 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 19/179 (10%), Positives = 37/179 (20%), Gaps = 27/179 (15%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + VD E D + +++ L V+ +G Sbjct: 218 SSPMFSVDCEMCETDVANRELTRISIVDEFENTILD----TLVKPEGRITDYVTRWSGIT 273 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + T A + G + D + Sbjct: 274 PDMMEGVTTTLGDVQKAIQSLL--PPDAILVGHSLEHDLQAMK----------------- 314 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNRHSAIGDAAATAFCFD 177 + H D+ + L + E + H + DA A Sbjct: 315 MTHPFCLDVGHVLNYTNSNTEFRN-SLKNLTELFLGAQIQSEFGHCSYEDAWAAMRLAQ 372 >UniRef50_UPI00017B20E5 UPI00017B20E5 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B20E5 Length = 527 Score = 94.9 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 26/206 (12%), Positives = 53/206 (25%), Gaps = 37/206 (17%) Query: 5 LIVVDLETTGLDYDTA---LPVEVGLLNVDTG-ESLYFVPHITVEQLAA--ADPKAMEIN 58 LIV+D E+T + +E + ++T + H V+ E+ Sbjct: 36 LIVIDFESTCWREKSNYSQEIIEFPAVLLNTSTGEVESEFHAYVQPQEHPILSAFCTELT 95 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP------------------AFDS 100 G + + + +Q+ N D Sbjct: 96 GITQTQVEAAIPLHICLSRFGRWLQELQVKTGLVFPNHPRTSAPSAASQKLCTFLTWSDW 155 Query: 101 T---IVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV 157 + + + + + + + GL+ + LG+ Sbjct: 156 DLGVCLQYECRRKQIHKPDVLNSWID---------LRSTYRLFYDRKPRGLNGALQDLGI 206 Query: 158 PVVNR-HSAIGDAAATAFCFDMLRHT 182 R HS + DA TA + Sbjct: 207 QFAGREHSGLDDARNTAGLAARMMRD 232 >UniRef50_C6QF81 Exonuclease RNase T and DNA polymerase III n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QF81_9RHIZ Length = 225 Score = 94.9 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 27/188 (14%) Query: 3 KQLIVVDLETTGL------DYDTALPVEVG-----LLNVDTGESLYFVPHITVEQLAAAD 51 ++++ VD ETTGL D + +G + G + A+ Sbjct: 22 QRILFVDTETTGLRRPSAASEDHDRVISIGFFDTDASALQAGFCRGKFGYFIFNPQQASA 81 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS 111 A ++GY +R L ++ + + + N FD V + Sbjct: 82 AGARRVHGYSDRILAQQDTFASCADMLFPAF---GSADLIVSHNTDFDRPFVESEFAGAG 138 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAA 170 + + LDA +RLG+ RH A+ DA Sbjct: 139 --------RSLRGKSWHCTMQAERAR----GGGSASLDASIDRLGIQRQSGRHGALEDAW 186 Query: 171 ATAFCFDM 178 + Sbjct: 187 LAMMLYLA 194 >UniRef50_Q6CE69 RNA exonuclease 4 n=1 Tax=Yarrowia lipolytica RepID=REXO4_YARLI Length = 291 Score = 94.9 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 50/184 (27%), Gaps = 30/184 (16%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + I +D E G+ + A V ++N + V+ + ++G Sbjct: 132 KFIALDCEFVGVGPNGARSILARVSIVNYYGHVLMDE----YVKPIERVTDWRTWVSGVT 187 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A V+ L G T G D ++ + + Sbjct: 188 PAMVANGI----SFSEAQERVKRLLNGRTLIGHALINDLAVL-------GLDHPRADIRD 236 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER---LGVPVVNRHSAIGDAAATAFCFDM 178 + + L V + L + HS++ DA A F Sbjct: 237 TQKPQYFKTVC---------GCKTPSLKHVMKECVDLNIQ-QGEHSSVIDAQAAMLLFRC 286 Query: 179 LRHT 182 + Sbjct: 287 YKKE 290 >UniRef50_A8SSB9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SSB9_9FIRM Length = 326 Score = 94.9 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 19/191 (9%) Query: 1 MAKQLIVVDLETT-------GLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQL--AAA 50 M IV+DLE G +E+G + VD ++ ++ Sbjct: 1 MTMNYIVMDLEWNQSYNGHMGEHPRMPFEIIEIGAVKVDKNLNIIDEYSSLIKPKIYKKL 60 Query: 51 DPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY 110 K I Y E L + E +W N + D T + Y Sbjct: 61 HSKIRTILNYDENDLN----LGRGFKEVCSEFLEWCGDNYIFCTWGPMDLTELQTNMDFY 116 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP-VVNRHSAIGDA 169 M P + + + + T L+ + +P H+A+ DA Sbjct: 117 YMDKLPRPLKFLNLQSIYASIT---NQSGSPQTMS-KLEKAVSEMNIPENEPFHTALNDA 172 Query: 170 AATAFCFDMLR 180 TA ++ Sbjct: 173 RYTALVMKEMK 183 >UniRef50_C1DKH9 DNA polymerase III, epsilon subunit n=17 Tax=Pseudomonadaceae RepID=C1DKH9_AZOVD Length = 240 Score = 94.5 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 13/164 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 A++ +V+DLETTGL+ + + + +G + ++ T+ + + +++ I+G Sbjct: 41 AQRFVVLDLETTGLNVERDVVLSIGAVLIENDAIDLSRQFECTLRRRLKSVTESVLIHGI 100 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A A ++ F + FD ++ R +G Sbjct: 101 APSALAVGTAP----AEALLRFMEYAGDCVFLAFHAPFDQRMLGRALK--------DELG 148 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 H D+A A GLD + G+ + RH Sbjct: 149 YRLRHPFLDVADLAPMLFPEALVHPGGLDQWIQYFGLDMSRRHH 192 >UniRef50_Q0IXT1 Os10g0407500 protein n=5 Tax=Magnoliophyta RepID=Q0IXT1_ORYSJ Length = 517 Score = 94.5 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 47/186 (25%), Gaps = 21/186 (11%) Query: 3 KQLIVVDLETT-----GLDYDTALPVEVGLLNVDTGE-SLYFVPHITVEQLA--AADPKA 54 ++ D+ET+ G Y +E G + V + V + Sbjct: 28 PEIAFFDVETSVPQRAGQGYA---LLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAAS 84 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMP 113 + NG + + + ++ G +AG N FD + P Sbjct: 85 VRCNGITRDAVAAAPAFRDVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRP 144 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + D K + ++A G+ H ++ D Sbjct: 145 PPEPKG-------MIDTLPLLTQKFGR-RAGDMKMASLANYFGLGRQ-SHRSLDDVRMNL 195 Query: 174 FCFDML 179 Sbjct: 196 EVLKYC 201 >UniRef50_C4Z5C1 Sporulation inhibitor KapD n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z5C1_EUBE2 Length = 324 Score = 94.5 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 21/190 (11%) Query: 1 MAKQLIVVDLETT--------GLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA--AA 50 M IV+DLE D+ +++G V+ + T++ Sbjct: 1 MFMNYIVMDLEWNQSAKGKQFSEDHFPFEIIQIGAAKVNEKLDIVDEWQCTIKPQVYTKL 60 Query: 51 DPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY 110 +I G E L E +W + + + D T + R Y Sbjct: 61 QNTVRKILGITENDLANGT----DFVSGVTEFLEWCGDDYTFVTWGSMDITELRRNMKFY 116 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDA 169 +P + DL D L + + G+ HSA+ DA Sbjct: 117 DVPENFPKPL-----LYLDLQKL-YSINFSDGKTRMNLKSAIDEQGIKGDEHYHSAMSDA 170 Query: 170 AATAFCFDML 179 TA L Sbjct: 171 RYTAKIMKKL 180 >UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX1_BUCBP Length = 481 Score = 94.5 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 49/197 (24%), Gaps = 15/197 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF---VPHITVEQLAAADPKAMEINGY 60 + D ET G + P + + D ++ DP+++ I G Sbjct: 10 TFLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPDPESVLITGI 69 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + E + A + +N FD + S Sbjct: 70 SPKYTSLFGVNEFEFAKKIYSLFMKSDTCIIGYNNIYFDDEFTRNIFYRNFL-NSYEWSW 128 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELE----------GLDAVAERLGVPVVNRHSAIGDAA 170 + + R L A + L ++ + H+A D Sbjct: 129 KNGNSRWDMLDLLRACYVLRPEGINWPRNEDNSVSLRLSDISLANNIVHNVAHNASSDVY 188 Query: 171 ATAFCFDMLRHTAAAHL 187 AT L L Sbjct: 189 ATMNI-AKLIKQKKPKL 204 >UniRef50_B3EM65 Exonuclease RNase T and DNA polymerase III n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3EM65_CHLPB Length = 159 Score = 94.5 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 32/127 (25%), Gaps = 16/127 (12%) Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E ++ + N +FD + + + + Sbjct: 8 ITNEMLKDK----PCCEEVMLEFSGFIADHNIVAHNASFDRRFLDSELKRANRKYEGSCC 63 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDM 178 + + + L + G+P H A+ DA TA+ + Sbjct: 64 -----------CSLLLSRRVYQDSPNHTLQTLVSHAGIPETGTFHRALADAEMTAYLWLS 112 Query: 179 LRHTAAA 185 + Sbjct: 113 MIDRIRR 119 >UniRef50_Q5HZL1 ERI1 exoribonuclease 2 n=13 Tax=Eumetazoa RepID=ERI2_XENLA Length = 687 Score = 94.5 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 55/202 (27%), Gaps = 35/202 (17%) Query: 5 LIVVDLETTGLDYDTA---LPVEVGLLNVD-TGESLYFVPHITVEQLAA--ADPKAMEIN 58 LI++D E+T +E + ++ + + H V+ E+ Sbjct: 38 LIIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPILSDFCTELT 97 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDW-------------------LRGNTFAGSNPAFD 99 G ++ + + + +Q + F + Sbjct: 98 GINQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCAFVTWSDWDL 157 Query: 100 STIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV 159 + + M + + + A Y GL+ + LG+ Sbjct: 158 GVCLLYECRRKQMKKP-----DILNSWIDLRATYKLFYNRRPK----GLNGALQDLGIEF 208 Query: 160 VNR-HSAIGDAAATAFCFDMLR 180 R HS + D+ TA + Sbjct: 209 SGREHSGLDDSRNTAKLASRMI 230 >UniRef50_Q5K6U9 Ribonuclease H, putative n=2 Tax=Filobasidiella neoformans RepID=Q5K6U9_CRYNE Length = 655 Score = 94.5 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 46/184 (25%), Gaps = 35/184 (19%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ +D E + D + +++ ++G+++ V + +G Sbjct: 302 PILAIDCEMV-VSKDGDELARISVIDFNSGKNV---FDELVLPPGEIVDYRTQWSGITAE 357 Query: 64 GLYREALTEQQTAVAWGEVQD-----WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 L + + G + D + Sbjct: 358 RLLSA---AHTISSIQNLLLSGPSPLITPHTILLGHSLECDLNALR-------------- 400 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPV---VNRHSAIGDAAATAF 174 + H D A GL +A + L + N H + DA A Sbjct: 401 ---IRHPLCIDTALIYKHPRGPPF--KPGLKWLAQKWLQRDIQAGENGHDSEEDALACVD 455 Query: 175 CFDM 178 M Sbjct: 456 LLKM 459 >UniRef50_C6DYG6 Exonuclease RNase T and DNA polymerase III n=3 Tax=Geobacter RepID=C6DYG6_GEOSM Length = 312 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 27/181 (14%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI------TVEQLAAADPKAMEING 59 + +D ETTGLDY +E+G++ + + I + + EI G Sbjct: 55 LCLDTETTGLDYKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGVPIPEEVKEITG 114 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + +A + E + + N AFD V + ++ Sbjct: 115 ISDDMVRGQAFDDP-FINLLAE-----KSHLVIAHNAAFDRKFVEARFPAFT-------- 160 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA-ATAFCFDM 178 +L + + L+ + + +N H A+ DA + Sbjct: 161 ------KLPWACTVSQIDWGAERVSSRTLEYLLFKTASLTINAHRALDDAEGVLGLLLER 214 Query: 179 L 179 L Sbjct: 215 L 215 >UniRef50_Q580W1 Putative uncharacterized protein n=2 Tax=Trypanosoma brucei RepID=Q580W1_9TRYP Length = 762 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 51/193 (26%), Gaps = 29/193 (15%) Query: 5 LIVVDLETTGLDYDT----ALPVEVGLLNVDT---GESLYFVPHITVEQLAAADPKAMEI 57 L+VVD E T +Y +E ++ VD F ++ + ++ Sbjct: 555 LLVVDFEATCEEYAPPSYLHEIIEFPVVVVDAKLQRVITEFHRYVKPKVKPQLSEFCRQL 614 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNT-------FAGSNPAFDSTIVA-RQRVT 109 G + + + + W PA + Sbjct: 615 TGIRQEDIDSA----APLEDVIKQFERWYAQTIPPGSRTVLVTDGPADLREFMYVHSVTR 670 Query: 110 YSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGD 168 + F ++ D+ A + A+ E L P R HS I D Sbjct: 671 QGIRFPS------MFYQWIDVKQVFAHFFQCQQG---KIKAMLEVLQCPFEGRLHSGIDD 721 Query: 169 AAATAFCFDMLRH 181 A A + Sbjct: 722 ARNIAKIVIRMLE 734 >UniRef50_C1DM64 Exonuclease n=21 Tax=Pseudomonadaceae RepID=C1DM64_AZOVD Length = 185 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 54/182 (29%), Gaps = 17/182 (9%) Query: 3 KQLIVVDLETT----GLDYDTALPVEVGL--LNVDTGESLYFVPHITVEQLAAADPKAME 56 + +V+DLE T G +E+G +N + E +F + + E Sbjct: 2 DKWLVIDLEATTDEGGWPVADMEIIEIGASLVNRNGHELDHFKRFVRPLRRPLLTLFCQE 61 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 + + + + + S +D + ++ + + S Sbjct: 62 LTHIAQSDIDSATPLPMVWEQFEHWLAPYRPRLAGWTSWGDYDRRQLEQEWRRHGLASSL 121 Query: 117 LTVGR-VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAF 174 + + R AD GL + G+ +H A+ DA TA Sbjct: 122 IPLSHVNLKQRFADTRQLK---------RPVGLRTALQLAGMSFQGQQHRALEDARNTAR 172 Query: 175 CF 176 Sbjct: 173 LL 174 >UniRef50_B5GC70 DNA polymerase III n=1 Tax=Streptomyces sp. SPB74 RepID=B5GC70_9ACTO Length = 243 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 5/161 (3%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ D+E+TG+D +TA V + V G + +A ++G Sbjct: 6 QRYCAFDIESTGVDVETARIVTACVAQVRGGALPE-TRSWLADPSIEIPDEATAVHGITT 64 Query: 63 RGLYREALTEQQTAVAWGEVQDWL--RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + + G N +D T++ R+ + P +G Sbjct: 65 DRARAEGRPAGEVVEEITTLLHSCLLAGAPVVAMNARYDLTLLDRECRRHERPTLADRLG 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 L L +++ L A+AE VP+ Sbjct: 125 GDVRPVLDPLVLDR--QVDRYRRGKRTLTALAEHYRVPLDG 163 >UniRef50_UPI000169A625 DNA polymerase III, epsilon subunit n=1 Tax=Yersinia pestis FV-1 RepID=UPI000169A625 Length = 143 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 9/119 (7%) Query: 8 VDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 +D ETTG++ Y+ +E+G + V H+ V+ DP+A ++G + Sbjct: 11 LDTETTGMNKLGVHYEGHRIIEIGTVAVINLPLTGRNFHVYVKPARLVDPEAYGVHGISD 70 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + A E D++RG N AFD + Sbjct: 71 EFLADK----PTFADITPEFLDFIRGGELVIHNAAFDIGFKDYEFRMLQQDIPKTETLC 125 >UniRef50_Q2B6U8 DNA polymerase III subunit epsilon n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6U8_9BACI Length = 214 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 43/180 (23%), Gaps = 30/180 (16%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTG-------ESLYFVPHIT-VEQLAAADPK--AMEI 57 VD+ETTGL +E+ + + + A A I Sbjct: 10 VDVETTGLAPGGDEIIELAFILFSYDGATGEILQVEEKESFLREPLSSRALRNYSSAYRI 69 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + ++ + ++ N +FD + + + + Sbjct: 70 HGIPFEMVRGQVFHDESVQSFL------NKADSVFAHNASFDRSFMYQMYPEVN------ 117 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L + L + + H A+ D Sbjct: 118 --------DLKWYCTMKGVQWKKYGFANSKLATLLSAHNITDHQTHRAMDDITYLMELMK 169 >UniRef50_B6GWY2 Pc12g00030 protein n=24 Tax=Eurotiomycetidae RepID=B6GWY2_PENCW Length = 680 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 43/188 (22%), Gaps = 30/188 (15%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D E + + + ++ GE + V+ +G Sbjct: 289 RDVFALDCEMCITEGGQSELTRISMVGW-GGEVVLDE---LVKPARPVINYLTRYSGITP 344 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L T + G + D T + + Sbjct: 345 EMLEPVTTTLHDIQQRLLTLL--TPRAILVGHSLNSDLTALK-----------------L 385 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR----HSAIGDAAATAFCFDM 178 H + D + L + ++ + H +I DA A Sbjct: 386 VHPFIVDTSIIYPHPRGPPL--KCSLKWLTQKYQNKQIQSGMAGHDSIEDARAVLELV-K 442 Query: 179 LRHTAAAH 186 L+ Sbjct: 443 LKCEKGER 450 >UniRef50_B9KV31 Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides KD131 RepID=B9KV31_RHOSK Length = 538 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 19/176 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +D+ET ++D ++G+ V S+ V+ ++G R Sbjct: 217 RFFALDVET--ANHDRGSICQIGVACVRPDSSIE-TWVTYVDPQVD-RWVFTYLHGISAR 272 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + +QD L G T + FD + VA + +P Sbjct: 273 TVQGA----PTFSEVLPVLQDALNGATIYQHSG-FDRSAVAAACINCCLPIP-------- 319 Query: 124 HHRLADLAAYAAGKLN-IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 D A + GL ++ + LG+ H A DA A A Sbjct: 320 QWEWRDSVHVARAAWPELRGNGGHGLASLKQHLGLVFE-HHDAGEDARAAAEVVLH 374 >UniRef50_B8HJ08 Exonuclease RNase T and DNA polymerase III n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJ08_ARTCA Length = 187 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 50/186 (26%), Gaps = 21/186 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL---AAADPKAMEINGY 60 +D E + D A VG+ V G + + D A I+G Sbjct: 8 NFTAIDFEA--ANSDRASACSVGVTTVRDGLIT-GTTSWLIRPFTGLDSFDAYASRIHGI 64 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + Q A + + N +D+T++ + Sbjct: 65 DASMV----IDAQPLKDAMLRLSGIIGDGPVLAHNITYDATVLRHSFELTGLGQPRNE-- 118 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L E L V LG+P + H A D+ A A + Sbjct: 119 ------FRCTQTLSRAAL---QLEKTRLHVVTAYLGLPEFDNHDAAADSLACARIALHIA 169 Query: 181 HTAAAH 186 A Sbjct: 170 ARRRAS 175 >UniRef50_A8RJ45 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A8RJ45_9CLOT Length = 337 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 48/186 (25%), Gaps = 23/186 (12%) Query: 4 QLIVVDLETT-GLDYDTA-------LPVEVGLLNVDTGESLYFVPHITVEQLA--AADPK 53 IV DLE + +E+G + ++ H + K Sbjct: 2 NYIVFDLEWNQSPNGKEDSVEHLPFEIIEIGAVKLNGNFEQTGTFHKLIRPKVYKKMHFK 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSM 112 E+ L +E + V W + + D T + R + + Sbjct: 62 ISEVTHMDMAELRQEG---EPFDVVMNRFLAWCGEEEYCFCTWGSMDLTELQRNMAYHKL 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTEL-EGLDAVAERLGVPVVNR-HSAIGDAA 170 P L L L + LD + G+ H A+ DA Sbjct: 119 PNPFP-------RPLLYLDIQKLYCLQYGDGKNKVSLDMAVQIQGMEEERPFHRALDDAY 171 Query: 171 ATAFCF 176 T Sbjct: 172 YTGRIL 177 >UniRef50_A7SJI5 Predicted protein (Fragment) n=4 Tax=Eumetazoa RepID=A7SJI5_NEMVE Length = 167 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 52/186 (27%), Gaps = 30/186 (16%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D E G+ + + ++N D + V+ +G Sbjct: 6 VALDCEMVGVGEEMKSALARCSIVNYDGKVIYD----VYVKPDEPITDFRTRWSGIRPVH 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + R A + + L+ G FD ++ Sbjct: 62 MDRAI----SLRKARRQAKRLLKNRVLVGHALQFDLHVLKLNHPEL-------------- 103 Query: 125 HRLADLAAYAAGKLNIDPTEL--EGLDAVAERL---GVPVVNRHSAIGDAAATAFCFDML 179 + D + + ++N + L ++ RL + + H ++ DA A + Sbjct: 104 -LIRDTSKFIPLRINAGFHKDVTPSLKKLSSRLVSSDIQIDE-HCSVEDARAAMQLYRSC 161 Query: 180 RHTAAA 185 H Sbjct: 162 EHEWEQ 167 >UniRef50_A4RYR9 Predicted protein (Fragment) n=2 Tax=Ostreococcus RepID=A4RYR9_OSTLU Length = 189 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 47/180 (26%), Gaps = 32/180 (17%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D E + + ++ + GE +Y V+ E +G Sbjct: 39 FLALDCEFCYT-AEGLQLTRISVVK-EDGEIVYDK---LVKPPTEITNYNTEHSGITAEQ 93 Query: 65 LYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E+ + + G + D + + Sbjct: 94 MEGVQT---TLQDVQRELLEMIPCETILIGHSLENDLQRLK-----------------II 133 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPV-VNRHSAIGDAAATAFCFDMLRH 181 H + D A K L + ER G + H ++ DA AT L Sbjct: 134 HANVIDTCALYPHKKGAP--YRNALRFLTERYLGRKIQEGSHDSVADARATMEL--ALLK 189 >UniRef50_UPI000155C35F PREDICTED: similar to HEM45 n=2 Tax=Mammalia RepID=UPI000155C35F Length = 281 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 47/188 (25%), Gaps = 27/188 (14%) Query: 5 LIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +D E GL L+ V ++G + Sbjct: 109 VVSLDCEMVGLGPGGHESGLARCSLVGYHGNVLYDR----FVRPEGTITDYRTRVSGVCK 164 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A A E+ L G G + D + +Y + + Sbjct: 165 EDMKNAT----PFAEAREEILRLLEGKLVVGHDLQHDFEALKADMASYEIYDTSKD---- 216 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPVVNR---HSAIGDAAATAFCFDM 178 + L + + L + HS++ DA AT + + Sbjct: 217 ---------RLLWEVGGLGACRRVSLKVLTLKILKKNIQTGWSGHSSVEDAKATMELYKI 267 Query: 179 LRHTAAAH 186 R A Sbjct: 268 SRKIRARR 275 >UniRef50_C2CUZ9 DNA polymerase III subunit epsilon n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CUZ9_GARVA Length = 256 Score = 94.1 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 50/186 (26%), Gaps = 6/186 (3%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV--PHITVEQLAAADPKAMEINGYYE 62 L+ D ETTG L+ + + + +PKA ++NG+ + Sbjct: 29 LLGFDTETTGAILGEDSICSATLVLRNPQNKTHNDVIATWLINPHKPINPKASQVNGFTD 88 Query: 63 RGL-YREALTEQQTAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + V + N FD ++ + + Sbjct: 89 EFLQENGGEPTAEIEALAAAVSLAQSKNIPLLAYNAPFDVEMLRHDLKKWDLTSLNNRPN 148 Query: 121 RVWHH-RLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFDM 178 + + + + T L + GV P+ + H A D A Sbjct: 149 STINDGEILVVDPLVIDRAVSKRTGKRTLTHTTQFYGVEPIGDFHDATADTVAAVDLIKP 208 Query: 179 LRHTAA 184 + Sbjct: 209 ISELHE 214 >UniRef50_B9KY42 Putative DNA polymerase III, epsilon chain (EC ) n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY42_THERP Length = 190 Score = 93.7 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 14/158 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++++D ETTG+ +E+ +L+ L V+ DP A+ ++G E Sbjct: 20 VVILDTETTGIR-SQDQVIELAVLDTHGNVLLE----TLVKPSCPIDPAALRVHGLSEAH 74 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + V + E++ N FD ++ + Y + L+ W Sbjct: 75 LAHA----PEWPVVYRELRVIFDRARLIVTYNAPFDRRLIEQTCRCYGLSLPDLS----W 126 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 + A YA L +RLG+P Sbjct: 127 DCAMRRFAEYAGPPPTESWRNYHRLSEALQRLGIPHPG 164 >UniRef50_Q0EWR1 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWR1_9PROT Length = 179 Score = 93.7 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 61/192 (31%), Gaps = 18/192 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP--HITVEQLAAADPKAMEIN 58 M+ ++V+D ETTGL D + + + V+ + +A I+ Sbjct: 1 MSD-ILVLDTETTGLGDD-------AEIIEIGIINGSGETVMNTLVKPTISIPEEATAIH 52 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + L A E++ ++G N +D ++ + + + Sbjct: 53 GITDNDLLNA----PVFADVVEELEGLIQGKILLIYNADYDLRLLRQSARKSKVQINLEP 108 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG-VPVVN--RHSAIGDAAATAFC 175 L + + + + L A R G VP H AI D A Sbjct: 109 AEVRCVM-LEYAKFFGEWNPKYENWKWQSLANAARRTGYVPAEGMLPHRAIADCVAALHV 167 Query: 176 FDMLRHTAAAHL 187 + + A L Sbjct: 168 YRHMHPENDAEL 179 >UniRef50_A1D8W3 RNA exonuclease, putative n=4 Tax=Trichocomaceae RepID=A1D8W3_NEOFI Length = 426 Score = 93.7 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 56/191 (29%), Gaps = 28/191 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ + +D E ++ A ++ +++ GE + I V +G Sbjct: 211 PRRAVALDCEMVEVEGGCAEVAQICAVDILAGEVIVD---IYVVPSKMVTDWRTPWSGMS 267 Query: 62 E---RGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPL 117 + + T A + + + G + D I+ Sbjct: 268 QKLLEEMKEAGKTVNGWEEARKALWAHIDPDTILVGQSLQHDLDIMR------------- 314 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNR-HSAIGDAAATA 173 + H + D A + + D + GL + +++ + R H+ + D AT Sbjct: 315 ----MVHLNIIDTAILSREAVAKDCKQNWGLKRLCKQMLDRDIQQSRRGHNCLEDTMATR 370 Query: 174 FCFDMLRHTAA 184 Sbjct: 371 EVVLWCVRHPG 381 >UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAP0_SULNB Length = 263 Score = 93.7 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 56/200 (28%), Gaps = 31/200 (15%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M L VD+E+TG+D +++ L V + F + + + I+ Sbjct: 1 MTPTLYFVDVESTGVDLKNDRLIQLAFLKVQGDKIEAFNDLCYTD--IEMNDTVVAIHNI 58 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + + N F D ++ + + M Sbjct: 59 TNAMLEDKYWPYET-DAFIELEKGNSPANYFIAHGNELDVAMLEHEELILEMQK------ 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-------------GVPVVNRHSAIG 167 + +L + L+ + R G+ ++ H A+ Sbjct: 112 ---------VDTDKCARLLLKEAGSYKLEDLITRYKLTQKAEAIAKQIGLSNLDAHDALS 162 Query: 168 DAAATAFCFDMLRHTAAAHL 187 DA F+ L + Sbjct: 163 DALWHYVLFEELLERVEGGI 182 >UniRef50_A8K979 ERI1 exoribonuclease 2 n=10 Tax=Metazoa RepID=ERI2_HUMAN Length = 691 Score = 93.7 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 56/205 (27%), Gaps = 36/205 (17%) Query: 5 LIVVDLETTGLDYDTA----LPVEVGLLNVDT--GESL-YFVPHITVEQLAAADPKAMEI 57 LIV+D E+T + +E + ++T G+ F ++ ++ ME+ Sbjct: 37 LIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMEL 96 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRG-------------------NTFAGSNPAF 98 G + + + + + + F + Sbjct: 97 TGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWD 156 Query: 99 DSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP 158 + + + + A + +GL + +G+ Sbjct: 157 LGVCLEYECKRKQLLKPVFLNSWID---------LRATYKLFYRRKPKGLSGALQEVGIE 207 Query: 159 VVNR-HSAIGDAAATAFCFDMLRHT 182 R HS + D+ TA + Sbjct: 208 FSGREHSGLDDSRNTALLAWKMIRD 232 >UniRef50_A1ZEC3 DNA polymerase III alpha subunit n=2 Tax=Bacteroidetes RepID=A1ZEC3_9SPHI Length = 1403 Score = 93.7 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 53/189 (28%), Gaps = 16/189 (8%) Query: 5 LIVVDLETTGLD-----YDTA-----LPVEVGLLNVD-TGESLYFVPHITVEQLAAADPK 53 ++ D ETTGL T V++ D G+ + I + Sbjct: 2 YLIFDTETTGLPKDFNAPHTDVDNWPRLVQIAWQLHDYNGKLVSAENMIVKPEGFTIPFN 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEV-QDWLRGNTFAGSNPAFDSTIVARQRVTYSM 112 A +++G E L + D R G N FD I+ + V ++ Sbjct: 62 AEKVHGISTEIALEEGL---PLNEVLEKFAVDIARSELIIGHNIGFDVNIMGAEYVRTTV 118 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPVVNRHSAIGDAAA 171 V + L + + + H A D A Sbjct: 119 DSKLHEVPTYDTKSEETAEYVGIQGGRGGKFKWPTLTELHTKLFSESFDDAHDAAYDVLA 178 Query: 172 TAFCFDMLR 180 TA C+ L Sbjct: 179 TARCYFGLI 187 >UniRef50_B6FR49 Putative uncharacterized protein n=2 Tax=Clostridium nexile DSM 1787 RepID=B6FR49_9CLOT Length = 190 Score = 93.7 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 46/180 (25%), Gaps = 19/180 (10%) Query: 6 IVVDLETTGLDYD----TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 IV DLETTGL + + ++++ + F + E + KA ING Sbjct: 17 IVYDLETTGLYPFSPELGDEILSMCIMDLQGS--VLFEHYFKPEHTESWS-KAAAINGIT 73 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 + E + N FD + + + + Sbjct: 74 PEKVENEKPFSFYRDEVQRIF---DAADILITYNGIHFDDSFLEAA----GIEIPDVMQF 126 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V L A H A D AT C+ + Sbjct: 127 DVMLKFA---WLMHEWDDYHKSWRWHKLINCAAYYNYEF-PAHDATEDVRATLHCYTEMM 182 >UniRef50_Q8QNF3 EsV-1-126 n=1 Tax=Ectocarpus siliculosus virus 1 RepID=Q8QNF3_ESV1 Length = 206 Score = 93.3 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 60/198 (30%), Gaps = 21/198 (10%) Query: 1 MAKQLIVVDLETTGLDYDTA-----------LPVEVGLLNVDTGESLYFVPHITVEQLAA 49 M + + D+ETTGL A V + + + +++Y + + A Sbjct: 1 MPE--LFFDVETTGLPPRKANPETFEQYDSCRVVSIAWV-LRDEKTVYSQRYSVTDPGIA 57 Query: 50 ADP-KAMEINGYYERGLYREALTEQQTAVAWGEVQ-DWLRGNTFAGSNPAFDSTIVARQR 107 + A ++G + R V + D R + N FD ++V+ + Sbjct: 58 DENIGAEFVHGISREVMDRYGNAT---KVVLSDFMADVDRSDKIVAHNLDFDRSVVSAEL 114 Query: 108 VTYSMPFSPLTVGRV-WHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVVNRHSA 165 + + + + L+ + E G N H A Sbjct: 115 FRMGSSDDARRLMSFKSLCTMKSTTNLVRIPNSYGSYKWPKLEELHEFLFGHVFENAHHA 174 Query: 166 IGDAAATAFCFDMLRHTA 183 + D A C+ L Sbjct: 175 MCDVDAMVKCYFTLLEKH 192 >UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKN8_DESAH Length = 471 Score = 93.3 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 51/189 (26%), Gaps = 14/189 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVD--TGESLYFVPHITVEQLAAADPKAMEINGY 60 K + D+ET+GL+ + + D E I++ P A + Sbjct: 2 KTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVISLRNDIVPSPGAFITHRL 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L Q A + + + ++ FD + + Sbjct: 62 TPEDLKDGLCEYQGVA-LIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLD-PYTHQY 119 Query: 121 RVWHHRLADLAAYAAGKLNIDPT---------ELEGLDAVAERLGVPVVN-RHSAIGDAA 170 R+ L ++ L+ ++E+ + H A+ D Sbjct: 120 ANDCARMDLLPIATLYRIFKPDGIHWPVIDDKASMRLELISEKNNLVQSGRAHDAMTDVE 179 Query: 171 ATAFCFDML 179 AT L Sbjct: 180 ATLALARRL 188 >UniRef50_B1P7L9 YacC n=21 Tax=root RepID=B1P7L9_ECOLX Length = 282 Score = 93.3 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 18/185 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTGLD +TA +E+GL + ++ A +A ++G E+ L Sbjct: 105 LFLDTETTGLD-NTAEALEIGLTDAAGQVV----FETRLKPTVAIGAQAAAVHGISEQAL 159 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 +++ + N FD I+ + +S P L V Sbjct: 160 CGA----PSWTDVARQLRHAIGDRPVIIFNSRFDIRILKQTAAAHSDPADWLEEMTV--- 212 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAATAFCFDML----R 180 + A + L + A + G+ HS I DA A + + Sbjct: 213 -YCAMELAAGYYGATNRYGTISLASAASQAGLTWEGQAHSTIADARMAAGVVNAIAAYHL 271 Query: 181 HTAAA 185 Sbjct: 272 ELLQE 276 >UniRef50_B7APL8 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7APL8_9BACE Length = 318 Score = 93.3 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 54/188 (28%), Gaps = 23/188 (12%) Query: 4 QLIVVDLETTGLDYDTA--------LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM 55 IV+DLE +E+G + +D+ ++ + Sbjct: 2 NYIVMDLEWNQCPKGKEFENKKLPFEIIEIGAVKLDSSFNVVGEFDRLIRPQLY-----T 56 Query: 56 EINGYYERGLY---REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM 112 +++ + L E L E +W + + D T + R + + Sbjct: 57 KLHHIVKELLDVSSEELLAGGAFPEVMEEFLEWCDEDYMFCIWGSGDLTELQRNMNFFGV 116 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAA 171 D+ L D L +V E + + H AI DA Sbjct: 117 ENKFPMPFI-----FYDIQK-FYSILYEDGKIRRSLQSVIEAMHLSETEEFHRAINDARY 170 Query: 172 TAFCFDML 179 TA M+ Sbjct: 171 TAHVMQMM 178 >UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF4745 Length = 1746 Score = 93.3 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 27/182 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A ++ V+D+ETTGLD E+ L+ +D + + + A ++ Sbjct: 101 ADRIAVLDIETTGLDSAADFVCELALVGLDG--TPLANIMVQLPAGVARPNESF------ 152 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFA-GSNP-AFDSTIVARQRVTYSMPFSPLTV 119 E A ++ L G N FD + + + L Sbjct: 153 --------GAEFPLDDALRLLEAHLAEIDLVIGHNLLEFDRPFLEKAAQRAGVDPPHLPS 204 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + L L + + + H A+ DA ATA + Sbjct: 205 ---------CVDSLHLATLVDVAMPNRSLADLTHQFNIVHQEPHRALADATATAGVVRAM 255 Query: 180 RH 181 Sbjct: 256 LD 257 >UniRef50_UPI00017F79C3 YALI0B10824p n=1 Tax=Yarrowia lipolytica RepID=UPI00017F79C3 Length = 184 Score = 93.3 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 29/181 (16%) Query: 5 LIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +D E G+ + V L++ L + V+ E++G Sbjct: 20 YVAIDCEFVGVGPEGAHDQLARVSLVDYFGSVLLD----VFVQGPRPVVDYRTEVSGITP 75 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A V + G G + D ++ YS+ S + Sbjct: 76 ELVQEGV----EFNAARLAVVKLIDGKVLVGHSIKHDLLVLQINWKKYSLRDSQDHRPFL 131 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV-NRHSAIGDAAATAFCFDMLRH 181 + + L +A +G+ + HS++ DA A + + Sbjct: 132 --------------RRDRPQ----KLKYLARGIGLSIQSGEHSSVEDAQAVMAVYRAHKD 173 Query: 182 T 182 Sbjct: 174 E 174 >UniRef50_A8Q5M1 Exonuclease family protein n=1 Tax=Brugia malayi RepID=A8Q5M1_BRUMA Length = 399 Score = 92.9 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 53/191 (27%), Gaps = 16/191 (8%) Query: 7 VVDLETTG---LDYDTALPVEVGLLNVDTGE---SLYFVPHITVEQLAAADPKAMEINGY 60 V+D E T L +E + VD + F ++ G Sbjct: 148 VIDFECTCEADLYDYNHEIIEFPAVLVDVRKKEIVDVFHSYVRPLANPQLSEFCSAFTGI 207 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAF----DSTI-VARQRVTYSMPFS 115 + + + + W++ + ++ + D +A+ + Sbjct: 208 TQEMIDKAL----PFIDVLDSFRTWMQLHRLGQNDMRYAFVTDGPWDIAKFFQMQCIQSK 263 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAF 174 TV + + ++A + L + L + R HS + D+ A Sbjct: 264 LNTVPHDFRFYINIRRSFANKYCKKYSMQKINLGGMLTFLNMKFEGREHSGLDDSKNIAR 323 Query: 175 CFDMLRHTAAA 185 + + Sbjct: 324 IVIKMLEDRSE 334 >UniRef50_Q1WDI5 DNA polymerase III n=5 Tax=root RepID=Q1WDI5_9CAUD Length = 238 Score = 92.9 bits (230), Expect = 5e-18, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 6/158 (3%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L D ETTG+D ++ V +L V G+ + A ++G Sbjct: 7 RLCAFDTETTGVDVESDRIVTAAVLLVGGGQPTETHT-WLADPGIDIPEAASAVHGVTSE 65 Query: 64 GLYREALTEQ-QTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E + + D + G N FD TI+ R+ + +P G Sbjct: 66 RARAEGRPAPMVVSEVAALLADQIVTGVPVVAMNARFDVTILDRELARHGLPSLAEQAGA 125 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV 159 + D + L +A GV + Sbjct: 126 --EPLVLD-PLVMDKRAEKYRRGGRKLVDLARHYGVQL 160 >UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NSM4_9RHOB Length = 469 Score = 92.9 bits (230), Expect = 5e-18, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 55/192 (28%), Gaps = 13/192 (6%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGYYE 62 DLET+G P++ + D E + P A+ + G Sbjct: 2 FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEVERIDIRCRLSPHILPAPWALAVTGVSP 61 Query: 63 RGLYR-EALTEQQTAVAWGEVQDWLRGNTFAGS-NPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + + + T+ G N AFD ++ + P LT Sbjct: 62 GMLSNPNLPSAFEFSQEVSSLIHRWGPATWTGYNNIAFDEQMLRQMFYQNLHPNLYLTQM 121 Query: 121 R-----VWHHRLADLAAYAAGKLNID----PTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 + A L LD +A G N H A+ D A Sbjct: 122 DGNDRMDIMKLVYATWVLANDALTWPTDEAGKITFKLDQLAPANGFVSNNFHDALADVEA 181 Query: 172 TAFCFDMLRHTA 183 T ++R A Sbjct: 182 TINIAKLIRDRA 193 >UniRef50_Q9XXI3 Protein Y17G7B.12, confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=Q9XXI3_CAEEL Length = 269 Score = 92.9 bits (230), Expect = 5e-18, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 57/188 (30%), Gaps = 27/188 (14%) Query: 4 QLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++I +D E G + + ++N + G+ +Y V+ ++G Sbjct: 101 KVIAIDCEYVGAGMGGTTDILARISIVN-ELGKIVYDKF---VKPTEKVTDFRTAVSGIR 156 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A EV + G G D ++ + Sbjct: 157 PENMIKAI----PFDRAQTEVSKLIDGRIVIGHAVHNDFRVLKLNHIR------------ 200 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER-LGVPVV-NRHSAIGDAAATAFCFDML 179 D A K + L +A+ LG+ + H +I DA ++ + Sbjct: 201 ---KLTRDTAKCTILKNMANHHGTPSLKKLAKEVLGIEIQRGEHDSITDARVALRLYEAV 257 Query: 180 RHTAAAHL 187 + A + Sbjct: 258 KKQWEAEI 265 >UniRef50_A0B4X4 Exonuclease, RNase T and DNA polymerase III n=2 Tax=Burkholderia RepID=A0B4X4_BURCH Length = 293 Score = 92.9 bits (230), Expect = 5e-18, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 55/173 (31%), Gaps = 22/173 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 + +D ETTGLD+ A VE+ +L+ + V+ A EI+G + + Sbjct: 130 LFIDTETTGLDH-QAAIVEIAILDRAGAVLID----TLVKPAMPIPAAATEIHGITDADV 184 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 +V + L G N AFD ++ + ++ + L V Sbjct: 185 AGA----PAWNTIGPQVAELLAGRLLIAHNGAFDERLLYQTSRSHGVTLPALRVE----- 235 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFCFD 177 LN L A LG RH A DA Sbjct: 236 -----CTMEL--LNGWAGRWLSLADAALMLGAGTFAARHRACADAEQCRQIVL 281 >UniRef50_C5MCL7 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MCL7_CANTT Length = 656 Score = 92.5 bits (229), Expect = 6e-18, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 47/180 (26%), Gaps = 33/180 (18%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D E ++ + L++ V+ + +G E Sbjct: 293 IYALDCEFCKAG-TQSVLTRISLIDFQGEVV----FDELVKPEEEITDYVTKYSGITEEM 347 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L T + ++ + G + D ++ + H Sbjct: 348 LKDVTTTIHDIQDLF--LKHVSSEDILVGHSLESDLNVMK-----------------IMH 388 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERL-------GVPVVNRHSAIGDAAATAFCFD 177 ++ D + L +A++ G + HS+I DA A Sbjct: 389 SKVVDTSIIYEHNRGPP--SKPSLRWLAQQYLKSDIQTGEDHGHGHSSIEDAKACLDLVK 446 >UniRef50_C7R5J9 DNA polymerase III, epsilon subunit n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R5J9_JONDD Length = 298 Score = 92.5 bits (229), Expect = 6e-18, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 42/157 (26%), Gaps = 16/157 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D+ETTGL +E+ +++ DT ++ + + + Sbjct: 4 YAVIDVETTGLSSRNDRVIELAVVHTDTHGTITGHWETLINPQRNLTAQHIHHI------ 57 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 A ++ L G N FD+ +A + + H Sbjct: 58 HASHIQHAPLFADIATDLLTLLDGRVPVAHNAPFDARFLAAELHRTG---------KTLH 108 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN 161 + L + + L + Sbjct: 109 QQHDFLCTMNLSRRYLPGVGKP-LADCLAATNITNTG 144 >UniRef50_P53331 RNA exonuclease 1 n=6 Tax=Saccharomyces cerevisiae RepID=REXO1_YEAST Length = 553 Score = 92.5 bits (229), Expect = 6e-18, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 47/174 (27%), Gaps = 29/174 (16%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D E L + + L+N D V+ +G E Sbjct: 225 IFALDCEM-CLSEQGLVLTRISLVNFDNEVIYEE----LVKPDVPIVDYLTRYSGITEEK 279 Query: 65 LYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ ++ + R + G + D ++ + Sbjct: 280 LT--VGAKKTLREVQKDLLKIISRSDILIGHSLQNDLKVMK-----------------LK 320 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVV-NRHSAIGDAAATAFC 175 H + D A K L ++E L + H ++ DA A Sbjct: 321 HPLVVDTAIIYHHKAGDPF--KPSLKYLSETFLNKSIQNGEHDSVEDARACLEL 372 >UniRef50_UPI00019273F5 PREDICTED: similar to YALI0B15400p n=2 Tax=Hydra magnipapillata RepID=UPI00019273F5 Length = 943 Score = 92.5 bits (229), Expect = 6e-18, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 51/186 (27%), Gaps = 32/186 (17%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +L+ +D E + D V +++ V+ + + +G Sbjct: 291 NSKLLAIDCEMCSVMGDKRALTRVSIVDDKLNLVYDQ----LVQPDSPITDYLTQFSGIT 346 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L+ ++ ++ + G + FD + Sbjct: 347 PAMLHGVTT---TLQDVQRDLLKIIQPDTILIGHSLDFDLRSLM---------------- 387 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVVN---RHSAIGDAAATAFCF 176 + H + D + N P L + + L + N H +I DA A Sbjct: 388 -LHHDNIIDTSVL--YVDNRGPRYKSSLRCLVKSYLNRDIQNTDKGHCSIEDARACMELV 444 Query: 177 -DMLRH 181 ++ Sbjct: 445 KLKIKK 450 >UniRef50_Q9FLJ5 Exonuclease-like protein n=3 Tax=Arabidopsis thaliana RepID=Q9FLJ5_ARATH Length = 500 Score = 92.5 bits (229), Expect = 7e-18, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 27/186 (14%) Query: 4 QLIVVDLETT-----GLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQ--LAAADPKAM 55 ++ D+ETT G Y +E G + V + + + V L P+++ Sbjct: 12 EIAFFDVETTIPFRVGQGYA---ILEFGSILVCPKKLVELKNYSVLVRPANLNLITPRSV 68 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPF 114 + NG + A V D L G +AG N FD + Sbjct: 69 KCNGIKREDVESAL----TFADIADTVYDILHGRIWAGHNILKFDCPRIREAFAEIGRDP 124 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPT-ELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + + A + +A G+ H ++ D Sbjct: 125 PEPKG---------TIDSLALLTQRFGRRAGDMKMATLATYFGLGNQ-THRSLDDVRMNF 174 Query: 174 FCFDML 179 Sbjct: 175 EVLKYC 180 >UniRef50_A8QEY2 Exonuclease family protein n=1 Tax=Brugia malayi RepID=A8QEY2_BRUMA Length = 648 Score = 92.5 bits (229), Expect = 7e-18, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 44/178 (24%), Gaps = 28/178 (15%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VD E + + + ++ E + V+ + +G E+ Sbjct: 246 PFFAVDCEMCTTETGESELTRISIV----DECYEVLLDTLVKPRNRIVDYVTKYSGITEK 301 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + A + G D + + Sbjct: 302 MLENVNVRVEDVQRALSHIL--PNDAILVGHTLECDFNAMR-----------------IT 342 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNRHSAIGDAAATAFCFDM 178 H D++ L+ + L +A + N H ++ DA T Sbjct: 343 HPYCVDISLCLN--LSGKDRQRSSLKTLARIFLDEEIQGENGHCSVDDAVITMRLLKY 398 >UniRef50_Q4QAQ2 Phosphotransferase, putative n=3 Tax=Leishmania RepID=Q4QAQ2_LEIMA Length = 582 Score = 92.2 bits (228), Expect = 7e-18, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 55/197 (27%), Gaps = 19/197 (9%) Query: 5 LIVVDLETTG---LDYDTALPVEVGLLNVDTGE---SLYFVPHITVEQLAAADPKAMEIN 58 +V+D E T A +E ++ +D F ++ + E+ Sbjct: 58 YVVLDFEATCEADRRISDAEVIEFPMVLIDARTATPVAEFQRYVRPVKNPVLSRFCTELT 117 Query: 59 GYYERGLYREALTEQQTAVAWGEVQD-------WLRGNTFAGSNPAFDSTIVARQRVTYS 111 G + + R A + + +R T++ Q Sbjct: 118 GITQDMVSRCDPFPVVYCEALQFLAEAGLGDAPPMRSYCVVTCGDWDLKTMLPAQMRVSG 177 Query: 112 -----MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSA 165 + F + +L G P G+ + + LG+P+ R HS Sbjct: 178 QQGTPLSFQRWCNLKKRMSQLGFGNGSGCGGGAAPPLGPSGMPDMLQMLGLPLQGRQHSG 237 Query: 166 IGDAAATAFCFDMLRHT 182 I D A L Sbjct: 238 IDDCRNLAAALCTLLRR 254 >UniRef50_A1TXN8 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TXN8_MARAV Length = 201 Score = 92.2 bits (228), Expect = 7e-18, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 46/185 (24%), Gaps = 22/185 (11%) Query: 5 LIVVDLETTG---LDYDTAL-------PVEVGLLNVDTGESLYFVPHITVEQLA--AADP 52 L+VVDLE+T L+ + +E+G L V+ Sbjct: 8 LLVVDLESTCWEDLNPEGKRQDVDSMEIIEIGCALATRDGQLLKSASFLVKPTRFPQLSD 67 Query: 53 KAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM 112 + G + + T + A + L S +D V Q Sbjct: 68 FCTALTGITQSMVDEA-PTYPEAIEALNKWLGELSDEFIWCSWGNYDRRHVEAQNQQTGS 126 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAA 171 + + R+ + + GL + H + DA Sbjct: 127 RPAMSRYPHLNLKRI--------WRRTTGQKQKNGLANALAFHDLTFEGSHHRGVDDARN 178 Query: 172 TAFCF 176 Sbjct: 179 IVRLL 183 >UniRef50_C4WWM3 ACYPI009144 protein n=2 Tax=Acyrthosiphon pisum RepID=C4WWM3_ACYPI Length = 243 Score = 92.2 bits (228), Expect = 7e-18, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 53/185 (28%), Gaps = 28/185 (15%) Query: 4 QLIVVDLETTGLDYD--TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +++ +D E G+ D + V ++N V+ A ++G Sbjct: 58 EVVAIDCEMVGIHPDGQGNMLARVSIVNSKGETIYDK----FVKPTATVTDYRTPVSGIR 113 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + EV L+ G D ++ Sbjct: 114 PKDIEHG----EVFVKVKKEVTQILKDKLLVGHALEHDLRVLR---------------IS 154 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVPV-VNRHSAIGDAAATAFCFDML 179 H + D + Y K + GL + G + HS++ DA A + + Sbjct: 155 HPKHMIRDTSTYWQFKQLTEG-RTPGLKRLTLHFLGASIQEGEHSSVQDAKAALQLYMLA 213 Query: 180 RHTAA 184 R Sbjct: 214 RKDWE 218 >UniRef50_C5DVJ3 ZYRO0D07172p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DVJ3_ZYGRO Length = 676 Score = 92.2 bits (228), Expect = 8e-18, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 45/179 (25%), Gaps = 33/179 (18%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D E L ++ V ++ D V+ + +G E Sbjct: 339 IFALDCEM-CLSAKGSVLTRVSIVGFDGNVVYDQ----LVKPDTPITDYLTKYSGITEEK 393 Query: 65 LYREALTEQQTAVAWGEVQDWL-RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ + + + G + D + + Sbjct: 394 LANVTT---TLQDVQRDILNMVSEDDVLIGHSLENDLNALK-----------------IR 433 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAE-RLGVPVVN----RHSAIGDAAATAFCFD 177 H ++ D + + L +A L + H+ I DA A Sbjct: 434 HPKIVDTSVIYDHRAGPPF--RPALRHLASTHLNYNIQTGEKIGHNPIEDAKACMDLVK 490 >UniRef50_B5FER1 Exonuclease KapD n=61 Tax=Vibrionales RepID=B5FER1_VIBFM Length = 176 Score = 92.2 bits (228), Expect = 8e-18, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 53/188 (28%), Gaps = 20/188 (10%) Query: 1 MA-KQLIVVDLETTGLDYDT----ALPVEVGL--LNVDTGESLYFVPHITVEQLAAADPK 53 M +++ DLE + + +EVGL +++ GE + + + Sbjct: 1 MNFNRIVCFDLEMCCWNENGKGRTGEIIEVGLAEIDLTKGEVVKRAQYYVKPEKDEISLF 60 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 +++ G R + ++ A + G + D I+ + + Sbjct: 61 CVDLTGISPRKIEKQGR---PLADVLKSMVKNFGGTNKIYAAWGHDEQILEAECKAKGIE 117 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAAT 172 + + E G E L + R HS DA Sbjct: 118 VPFNEFLNLATIYRI---------RSRKKNERMGQRRAMEELNIEWEGRQHSGYVDAYNL 168 Query: 173 AFCFDMLR 180 A + Sbjct: 169 AQLALKIL 176 >UniRef50_Q7F186 Os08g0377400 protein n=3 Tax=Spermatophyta RepID=Q7F186_ORYSJ Length = 286 Score = 92.2 bits (228), Expect = 9e-18, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 59/185 (31%), Gaps = 28/185 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLL-NVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + VD E G+ + +G + V++ ++ + + I+G + Sbjct: 94 VAVDCEMVGVGAGGSK-SALGRVTLVNSWGNVVYDEYTRPV--ERIVDYRTHISGIRPKH 150 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + V +V + ++G G D ++ + Sbjct: 151 MNKAK----DFWVVQKDVAELIKGRILVGHALHHDLKVL---------------LLGHPK 191 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAV-AERLGVPVVN-RHSAIGDAAATAFCFDMLRHT 182 + D + Y + + L + A+ LG + H I DA A F ++ + Sbjct: 192 KDIRDTSEYEVFRR---EGKRRSLKDLTAQVLGAKIQQKEHCPIEDARAAMFIYNKHKKV 248 Query: 183 AAAHL 187 ++ Sbjct: 249 WEKNM 253 >UniRef50_A8JCL9 Predicted protein n=2 Tax=Viridiplantae RepID=A8JCL9_CHLRE Length = 398 Score = 92.2 bits (228), Expect = 9e-18, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 52/203 (25%), Gaps = 34/203 (16%) Query: 6 IVVDLETTGLD----------------YDTA-------LPVEVGLLNV--DTGESLYFVP 40 +VVD ETTG T V + + D L Sbjct: 202 LVVDTETTGFPRRLPGTPMNGFIREQVPYTDLEGWSTARIVSIAWRVLAPDGRMELQEHG 261 Query: 41 HITVEQ-LAAADPKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFD 99 + V A++I+G + +E L Q N +D Sbjct: 262 YRIVRPVGFVIPADAVQIHGISTQRATQEGLPLDQVLDELMSAIQRWNCGVIVAHNLKYD 321 Query: 100 STIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL-GVP 158 ++ + V R+ A + L + + L Sbjct: 322 LNVILSELYR---RNRAQDVARLERMEGVCTANCSKFYLGRY----HKQAELLKALTDED 374 Query: 159 VVNRHSAIGDAAATAFCFDMLRH 181 + H A DA A A C+ L Sbjct: 375 MRVAHDAECDAEACAKCYVALLQ 397 >UniRef50_Q06GG8 Putative exonuclease n=2 Tax=Rhodococcus RepID=Q06GG8_9NOCA Length = 238 Score = 92.2 bits (228), Expect = 9e-18, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 27/176 (15%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYYERG 64 +VD+ET+GLD +E+ +++ TGE L V+ +P A+E++G Sbjct: 52 CIVDVETSGLD---GSIIEIAVIDAATGEVLLN---TLVDCSPVEIEPGAVEVHGLTATD 105 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + E+ + N FD V + + L W Sbjct: 106 LAGA----PRWSEVFPELAAATKNRVVLAYNAKFDRGRVLHDCRREGIDPAHLAEPARWQ 161 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +A L + L H A+ D AT + Sbjct: 162 CVMARRCE----ALGLGLDGRLRLG-----------GGHRALADVRAT-RVVLRML 201 >UniRef50_C4V4J9 Possible exonuclease n=2 Tax=Selenomonas RepID=C4V4J9_9FIRM Length = 219 Score = 91.8 bits (227), Expect = 9e-18, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 21/192 (10%) Query: 6 IVVDLETTGLDYD--------TALPVEVGLLNVDTGESLYFVPHITVEQLAAAD-PKAME 56 IVVDLE + + +E+G + ++ V E Sbjct: 4 IVVDLEMNPVGKEYRDVRRKLNGEIIEIGAVRLNEDFVQEDEFQCYVCPEYGMVKKHITE 63 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAF-DSTIVARQRVTYSMPFS 115 + G + + A ++ W+ + + D + ++ + Sbjct: 64 LTGITQEKVAGH----PAFADSFHAFVAWIGEAETKIYSWSMSDIKQLRKECR---LKLP 116 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAF 174 V + R DL +L + L +G HSA+ DA T+ Sbjct: 117 DFDVTWLDT-RWVDLQQEFDDRLGLHN--SLALKHALGAMGRRFEGSQHSALADAVNTSA 173 Query: 175 CFDMLRHTAAAH 186 +++ A Sbjct: 174 VLALMQDDAKFR 185 >UniRef50_B5Y3X9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B5Y3X9_PHATR Length = 182 Score = 91.8 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 52/191 (27%), Gaps = 28/191 (14%) Query: 4 QLIVVDLETTGLDYDTAL--PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + + VD E G+ + V + N + L V+ ++G Sbjct: 2 RYLAVDCEMVGIGSEGQQSALARVSITNWNKDVVLD----TFVKVPGKVTDFRTWVSGVQ 57 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L V L+G G + D + Sbjct: 58 PKHLKS--DQAMDVDACRKTVARLLKGKILVGHSLKNDLHALM---------------LN 100 Query: 122 VWHHRLADLAAYAAG-KLNIDPTELEGLDAVAE-RLGVPVV---NRHSAIGDAAATAFCF 176 + D A Y +L L + + +G+ + H ++ DA AT F Sbjct: 101 HPKQDIRDTATYRPFQRLGGKKWRPRKLRDLVKQHVGLTIQEEGQSHDSVDDANATMDLF 160 Query: 177 DMLRHTAAAHL 187 + R L Sbjct: 161 KVAREVWEREL 171 >UniRef50_A8XUU5 Putative uncharacterized protein n=2 Tax=Caenorhabditis briggsae RepID=A8XUU5_CAEBR Length = 596 Score = 91.8 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 42/179 (23%), Gaps = 27/179 (15%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + L VD E + +++ + L V+ +G Sbjct: 221 SSPLFSVDCEMCETTTANRALTRISIVDEEQNTILD----TLVKPDGDITDYVTRYSGIT 276 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E+ + T A + G + FD + Sbjct: 277 EKMMEGVTTTLADVQKAVQNLL--PPDAILVGHSLEFDLRAMR----------------- 317 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL---GVPVVNRHSAIGDAAATAFCFD 177 + H D+ + N L ++E + H + DA A Sbjct: 318 MTHPFCIDVG-HTLNYTNSANGGRNSLKNLSEFFLGVQIQTKFGHCSYEDAWAAMRLAQ 375 >UniRef50_D2RA75 Exonuclease n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RA75_GARVA Length = 259 Score = 91.8 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 55/189 (29%), Gaps = 9/189 (4%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGE--SLYFVPHITVEQLAAADPKAMEINGYYE 62 L+ D ETTG + V L+ + + V + +PKA E+NG+ + Sbjct: 29 LLGFDTETTGANIGKDAIVSATLVLRNPELAHTGDVVSTWLINPHQPMNPKASEVNGFTD 88 Query: 63 RGLYREALTEQQTAVAWGEV--QDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L ++ + N FD ++ + + Sbjct: 89 EYLKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNAPFDIAMLRHDLKHWHLTALEERAT 148 Query: 121 RVWH----HRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNRHSAIGDAAATAFC 175 H + + + + + L ++ GV P+ + H A D A Sbjct: 149 CPIHALNANDILTVDPLVIDRAVSRRSGKRTLTITSQFYGVEPIGDFHDATADTVAALDL 208 Query: 176 FDMLRHTAA 184 + Sbjct: 209 IAPMSKLYE 217 >UniRef50_B6GWK0 Pc09g00030 protein n=2 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6GWK0_PENCW Length = 534 Score = 91.8 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 24/188 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 I +D E G+ + +N TGE L V + +G + + Sbjct: 287 IAIDCEMVGVRNGRQALAFLSAINFLTGEVLISR---YVNPSEEVLDWRYKFSGVTQGIM 343 Query: 66 YREALTEQQT---AVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A ++ +++ G + +D ++ ++ + Sbjct: 344 TSAVXSGAAFRTWQEARDKLWEFMDDSTVLVGHSLQYDLEVL------------GISHAK 391 Query: 122 VWHHRLADLAAYAAGKLN-IDPTELEGLDAVAERL---GVPVVNR-HSAIGDAAATAFCF 176 V + + + T GL +A+ + +R H+A+ DA A Sbjct: 392 VVDSAILTAETVYSSIPSTKPLTRNWGLKTLAKDFXGLNIQTSDRGHNALEDAYAARDVV 451 Query: 177 DMLRHTAA 184 Sbjct: 452 IWCIRNPE 459 >UniRef50_C9L988 Exonuclease family protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L988_RUMHA Length = 320 Score = 91.8 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 54/187 (28%), Gaps = 21/187 (11%) Query: 4 QLIVVDLETTGLDYDTA--------LPVEVGLLNVDTGESLYFVPHITVEQ--LAAADPK 53 IV DLE Y +E+G + +D ++ ++ + Sbjct: 2 NYIVFDLEWNQCPYGKEKENKKLPFEIIEIGAVKLDENRNIVDSFQEIIKPVVYHRLHFR 61 Query: 54 AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP 113 EI G L A + +W + + + D + R Y M Sbjct: 62 TKEILGITSNRLEEGI----PFKAAVKKFLEWCGTDVKFCTWGSADLVELQRNLKYYRML 117 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAAT 172 F D+ G + + L+ + L + + H A+ DA T Sbjct: 118 FLLKGPV-----FYYDVQKLF-GLIYENEKTTRSLEYAIDFLKMDKGDTFHQALNDAHYT 171 Query: 173 AFCFDML 179 A + Sbjct: 172 AEILKKI 178 >UniRef50_D0NF15 RNA exonuclease 4 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NF15_PHYIN Length = 351 Score = 91.8 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 56/181 (30%), Gaps = 30/181 (16%) Query: 5 LIVVDLETTG--LDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +D E G L T++ +++ D V + ++G Sbjct: 119 IVGMDCEMVGVGLSGKTSVLARCSIVDYDGNVLYDKH----VRPVEKVTDFRTHVSGIKS 174 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L R A EV L+ G D + Sbjct: 175 SSLRRAI----PFAQCLKEVGKLLQDKIVVGHALKNDFQALM---------------FSP 215 Query: 123 WHHRLADLAAYAAG-KLNIDPTELE--GLDAV-AERLGVPVV-NRHSAIGDAAATAFCFD 177 H + D A Y + ++ T+L L + AE LG + +H ++ DA AT + Sbjct: 216 PKHLIRDTAYYRPYMRRKMNGTKLYPKSLKNLTAEVLGKQIQTGQHDSVEDARATLELYK 275 Query: 178 M 178 Sbjct: 276 R 276 >UniRef50_B5X2U0 Interferon-stimulated 20 kDa exonuclease-like 1 n=2 Tax=Clupeocephala RepID=B5X2U0_SALSA Length = 378 Score = 91.8 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 49/192 (25%), Gaps = 31/192 (16%) Query: 2 AKQLIVVDLET--TGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 ++ +D E TGL T+ L++ + A +G Sbjct: 172 PTTVVAMDCEMVGTGLAGRTSELARCSLVDYHGNVLYDK----YIRPCQAVTDYRTRWSG 227 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L A E+ L G G D + + Sbjct: 228 IQRHHLQNAL----PFPKARTEILGILDGKVVIGHALYNDFQALDFNHPGHM-------- 275 Query: 120 GRVWHHRLADLAAYAAGKLN--IDPTELEGLDAVAERL---GVPVVNR-HSAIGDAAATA 173 + D + + L +A L + V R HS++ DA A+ Sbjct: 276 -------IRDTSGMRLLRRLAGFPTKRCVSLKILANSLLNRKIQVGRRGHSSVEDALASL 328 Query: 174 FCFDMLRHTAAA 185 + ++ Sbjct: 329 DLYKLVEGEWEQ 340 >UniRef50_UPI00016E5051 UPI00016E5051 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E5051 Length = 261 Score = 91.8 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 20/189 (10%), Positives = 46/189 (24%), Gaps = 29/189 (15%) Query: 4 QLIVVDLETTGLDYDT--ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +D E G + ++ V+ +G Sbjct: 59 TVVALDCEMVGTGPGGRYSELARCSIVGYHGNILYDK----YVQPCRPVTDYRTPWSGIQ 114 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L A A E+ L G G + D ++ + Sbjct: 115 KHHLLDAT----PFAQAREEILATLEGKVVIGHSVYNDFEVLDINHPPHM---------- 160 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVA-ERLGVPVVN---RHSAIGDAAATAFCFD 177 + D + + L + + L + H+++ DA A + Sbjct: 161 -----VRDTSMSPLLSQLAGFSCKRSLKVLTSKLLNRKIQGGRQGHNSVEDAQAALDLYK 215 Query: 178 MLRHTAAAH 186 ++ Sbjct: 216 LVEGEWERE 224 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.162 0.449 Lambda K H 0.267 0.0494 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,249,274,892 Number of Sequences: 3077464 Number of extensions: 50926995 Number of successful extensions: 194468 Number of sequences better than 1.0e-01: 1000 Number of HSP's better than 0.1 without gapping: 2800 Number of HSP's successfully gapped in prelim test: 2702 Number of HSP's that attempted gapping in prelim test: 179962 Number of HSP's gapped (non-prelim): 5846 length of query: 187 length of database: 1,040,396,356 effective HSP length: 121 effective length of query: 66 effective length of database: 668,023,212 effective search space: 44089531992 effective search space used: 44089531992 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 90 (39.0 bits)