BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (187 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q9ZX22 Gp57 n=2 Tax=unclassified Siphoviridae RepID=Q9Z... 191 8e-48 UniRef50_Q854A2 Gp164 n=1 Tax=Mycobacterium phage Omega RepID=Q8... 137 2e-31 UniRef50_Q6XNA5 Putative uncharacterized protein n=1 Tax=Rhodoco... 72 1e-11 UniRef50_UPI0001AEF4FD exonuclease RNase T and DNA polymerase II... 59 8e-08 UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydroge... 56 5e-07 UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB5... 56 7e-07 UniRef50_B5FC60 DNA polymerase III subunit epsilon n=58 Tax=Vibr... 55 9e-07 UniRef50_B1MC17 Putative uncharacterized protein n=1 Tax=Mycobac... 55 1e-06 UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 T... 50 6e-05 UniRef50_A0M2M5 Exonuclease family protein n=1 Tax=Gramella fors... 48 2e-04 UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokd... 46 7e-04 UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 45 0.002 UniRef50_A4C086 DNA polymerase III subunit n=2 Tax=Polaribacter ... 45 0.002 UniRef50_Q1QZ77 Exonuclease n=1 Tax=Chromohalobacter salexigens ... 43 0.004 UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robigin... 43 0.006 UniRef50_A8TQX4 DNA polymerase III, epsilon subunit n=1 Tax=alph... 42 0.007 UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero... 42 0.008 UniRef50_A3J795 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 42 0.011 UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 41 0.017 UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeu... 41 0.017 UniRef50_A1TZ29 DNA polymerase III, epsilon subunit n=3 Tax=Mari... 41 0.018 UniRef50_C6P477 DNA polymerase III, epsilon subunit n=1 Tax=Side... 41 0.018 UniRef50_B7V8D9 Probable nuclease n=6 Tax=Pseudomonas aeruginosa... 41 0.019 UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 41 0.020 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 41 0.021 UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG en... 41 0.025 UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flav... 40 0.031 UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha s... 40 0.033 UniRef50_B8ILM6 Histidine kinase n=8 Tax=Alphaproteobacteria Rep... 40 0.037 UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algorip... 40 0.040 UniRef50_Q0RWX6 Putative uncharacterized protein n=1 Tax=Rhodoco... 40 0.043 UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha ... 40 0.048 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 40 0.058 UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonel... 39 0.070 UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, e... 39 0.074 UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ... 39 0.087 UniRef50_B8R965 Putative DNA polymerase III epsilon subunit (Fra... 39 0.093 >UniRef50_Q9ZX22 Gp57 n=2 Tax=unclassified Siphoviridae RepID=Q9ZX22_BPMT4 Length = 177 Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 103/187 (55%), Positives = 129/187 (68%), Gaps = 10/187 (5%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +QL+VVD ETTGL +D A +EV +N+DTG L+FVP +T EQLA A P AM++N Y Sbjct: 1 MTRQLVVVDCETTGL-HDGAAILEVAAVNIDTGAELHFVPFVTREQLAQAQPMAMQMNRY 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 YERG+++ L+ T A+ ++ + L GNTF GSNPAFDS ++A +MP Sbjct: 60 YERGIWQRRLSPDSTDAAYWKLANMLAGNTFGGSNPAFDSRLLA-----AAMPDG----A 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 WHHRLADLAA+ AGKLN+DP EL GLDAV ERLGV V +RHSA+ DA ATA CF +LR Sbjct: 111 PEWHHRLADLAAFTAGKLNLDPVELPGLDAVCERLGVTVSDRHSALADAHATATCFTILR 170 Query: 181 HTAAAHL 187 AA L Sbjct: 171 EIPAAAL 177 >UniRef50_Q854A2 Gp164 n=1 Tax=Mycobacterium phage Omega RepID=Q854A2_9CAUD Length = 178 Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/187 (43%), Positives = 111/187 (59%), Gaps = 19/187 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M++Q+IVVD ET GL + + +E+ +NV+TGE VP +T QL++ +P+A+ IN + Sbjct: 1 MSRQIIVVDTETGGLGPNAPV-LEIAAVNVETGEEFRVVPFVTAAQLSSCEPEALAINRF 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLR----GNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 YER ++ + L + A DWLR GN FAGSNPAFD+ ++A+ Sbjct: 60 YERRVFADML---EDAEGNKNAFDWLRSMLDGNVFAGSNPAFDAPLIAK----------- 105 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L G WHHR L +YAAG L + EL GL+ V E LGV + HSA+GDA ATA CF Sbjct: 106 LLNGEPWHHRKLALESYAAGVLGLPLDELPGLNKVCEILGVENEDPHSALGDARATAECF 165 Query: 177 DMLRHTA 183 +LR A Sbjct: 166 RILRGMA 172 >UniRef50_Q6XNA5 Putative uncharacterized protein n=1 Tax=Rhodococcus erythropolis RepID=Q6XNA5_RHOER Length = 206 Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 8/156 (5%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++L+VV + TG D + +EV +++ +G+S F +T EQL ADP + NGYY Sbjct: 4 RELVVVQVNATGNDPARHVALEVAAVSLVSGKSWDFTVPLTQEQLVDADPSTLRRNGYYR 63 Query: 63 RGLY-REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 RGL R L+ + ++ L GNT G+ P + +AR F + Sbjct: 64 RGLADRADLSRPLLSGRIADLAGALAGNTLGGTAPEESADFLARL-------FRSFDIEP 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV 157 WH RLAD+ A AG + T + A G+ Sbjct: 117 RWHPRLADIGALTAGAFGLAATSIPTFTACCRMWGI 152 >UniRef50_UPI0001AEF4FD exonuclease RNase T and DNA polymerase III n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AEF4FD Length = 204 Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 65/148 (43%), Gaps = 31/148 (20%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGES-----LYFVPHITVEQLAAADPKAM 55 + L VD ETTGLD E+ ++ GE+ Y P L ADPKA+ Sbjct: 9 QSPPLAFVDTETTGLDPFQHDAWEIAVILRKPGETDQESVFYLEP-----DLINADPKAL 63 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLR-------GNTFAGSNPAFDSTIVARQRV 108 EIN Y+ER TE T WG+ QD R G GSNP FD+ ++A Sbjct: 64 EINRYHER-----VKTEDWT---WGKPQDVARDLYRLLDGTVLIGSNPPFDADMIANIFG 115 Query: 109 TYSMPFSPLTVGRVWHHRLADLAAYAAG 136 Y P WH+R D+A AAG Sbjct: 116 RYYWHPKP------WHYRTIDIAILAAG 137 >UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVH7_9AQUI Length = 215 Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 34/193 (17%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNV-----DTGESLYFVPHITVEQLAAADPKAMEING 59 +V D ETTGLD A V +G L V + ES F + ++L ++EI+G Sbjct: 40 FVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSES--FHRFVKPKELTRV---SVEIHG 94 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV-TYSMPF--SP 116 L ++A + + + +++RG+ G N FD IV + + +P Sbjct: 95 ITPHELEKKAESHDR---VLEDFMEYVRGSVLVGFNVEFDRKIVEKYSLKVLGLPLLNYR 151 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEG-LDAVAERLGVPVVNRHSAIGDAAATAFC 175 L V R+W R G+ EG L +AE LG+PVV HSA+ DA TA Sbjct: 152 LDVFRLWKKR--------GGR--------EGSLKDIAEELGIPVVGAHSALDDAYITALV 195 Query: 176 F-DMLRHTAAAHL 187 F +L+ A+L Sbjct: 196 FLKLLKRFRGANL 208 >UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB51_MYXXD Length = 219 Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 80/171 (46%), Gaps = 15/171 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY----FVPHITVEQLAAADPKAMEIN 58 + L VDLETTGLD +EV +L VD SL + + +LA A P+A+ + Sbjct: 29 RTLCFVDLETTGLDASRHEVLEVAVLRVD-ARSLKVLAEYEARVKPTRLADAHPEALAVC 87 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 GY + +R+AL Q+ V L G AG N +FD + S S L Sbjct: 88 GYSDEE-WRDALPLQEV---LATVTPLLAGTLVAGHNTSFDWGFLVE-----SYRRSELA 138 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDA 169 + V +HRL D A+ A L E L+A+A+R G+ H A+ DA Sbjct: 139 LPSVDYHRL-DTASLAWPLLATGEVESLSLNALAKRFGLHRPTPHRAMADA 188 >UniRef50_B5FC60 DNA polymerase III subunit epsilon n=58 Tax=Vibrionales RepID=B5FC60_VIBFM Length = 213 Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 87/182 (47%), Gaps = 16/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGYYE 62 +L+ +D ETT L+ + A V + + + L H+ + + + +++I+ Sbjct: 29 ELVSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPPQSLNSDSIKIHQLRH 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVAR---QRVTYSMPFSPLTV 119 + L+ L+EQQ A ++ +++ G + +D I+ R + ++ +P S + V Sbjct: 89 QDLH-HGLSEQQ---AMTQLLEFIGNRPIVGYHIRYDKKILDRACLRHFSHPLPNSLIEV 144 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++H++L L A L+I+ A+++ LG+P RH A+ DA A A + L Sbjct: 145 SHIYHNKLERLLPNAYYDLSIE--------AISKHLGLPQTERHDALEDAIAAALIYVRL 196 Query: 180 RH 181 H Sbjct: 197 TH 198 >UniRef50_B1MC17 Putative uncharacterized protein n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MC17_MYCA9 Length = 182 Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 19/186 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYYE 62 L+ +D ETTGL + P E+ ++ L+ + LAAADP ++I+G+++ Sbjct: 3 LVFLDTETTGLHRERE-PWEIAIIRRTAAGQRQLHLCVDVQDLDLAAADPAGLQISGFHK 61 Query: 63 RGLYREALTEQ-----QTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 R Q + A A V +W G T G P FD+ +AR + + Sbjct: 62 RHPQVRLRPLQFPRVFRAAEAVSLVAEWTAGATIVGVIPQFDTECLARMFLAHG------ 115 Query: 118 TVGRVWHHRLADLAAYAAGKL-NIDPTELEGLDAVAERLGVPV---VNRHSAIGDAAATA 173 VG W+ L D+ A A +L + T ++++ GV RH+A+GDA Sbjct: 116 -VGPTWNPELVDVVATTAARLRDRGLTPDADYSNLSQQFGVKTPSAAQRHTALGDARWAM 174 Query: 174 FCFDML 179 +D L Sbjct: 175 RWYDRL 180 >UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 Tax=Haliangium ochraceum DSM 14365 RepID=D0LN23_HALO1 Length = 180 Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 7/104 (6%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDT---GESLYFVPHITVEQLAAADPKAMEING 59 + L+ +D ETTGLD + +E+ + V E V + E+L ADP+A+E+NG Sbjct: 2 QPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNG 61 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV 103 Y R + +A++ A E+ L G AG N AFD + Sbjct: 62 YRRRA-WADAVS---LGDAMAELAPMLEGAVLAGHNVAFDRRFL 101 >UniRef50_A0M2M5 Exonuclease family protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M2M5_GRAFK Length = 223 Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 18/178 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV--EQLAAADPKAMEINGYY 61 + IV D ETTG +YD + +G + ++ S+ + V EQ +P+ ++I+G Sbjct: 38 RFIVFDTETTGFNYDEDRVLSIGAVRIENN-SIEISDNFEVFLEQ-KKFNPETVKIHGII 95 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E L+E + A + +++ + + FD ++ + +P + Sbjct: 96 QNEKF-EKLSELE---ALKKFLSYIQNSVLVAHHAGFDMKMINKALSRNGLP-------K 144 Query: 122 VWHHRLADLAAYAAGKLN---IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + L Y ++ ID ++ LD +AE + +++RH+A GDA TA F Sbjct: 145 LKNKVLDTSILYKKTRIATNFIDRDKIYSLDEIAEAYNIDLIDRHTASGDAYITALIF 202 >UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TRJ1_9FLAO Length = 229 Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 26/187 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAAD---PKAMEINGY 60 + +V D ETTGLDY + +G + V G + T+E D P + +I+G Sbjct: 45 RFVVFDTETTGLDYKKDRILSLGGVAV-VGNQVIVAD--TLELFLKQDFYNPDSAQIHGI 101 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++G Y + ++ A+A + D++ + G + FD +V + +G Sbjct: 102 LKQGNYLKV--NEKEAIA--QCLDFIGTDILVGHHVGFDVAVV-------NQSLKRAGLG 150 Query: 121 RVWHHRLADLAAYAAGKLNIDPT------ELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 R+ + +L Y K + P + LD +AE L +P+ +RH+A GD+ TA Sbjct: 151 RLKNRQLDTEILY---KRLVHPVNRPLQDKRYTLDELAEALKIPLHDRHTAAGDSLITAL 207 Query: 175 CFDMLRH 181 F + H Sbjct: 208 AFIKIVH 214 >UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11UG6_CYTH3 Length = 449 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 81 EVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS--PLTVGRVWHHRLADLAAYAAGKL 138 E+ D+ R + F N FD T V ++ +MP++ L R+ L +Y+ G L Sbjct: 74 EITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYNLPKLCTVRLSRKIFPGLPSYSLGNL 133 Query: 139 NIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 LG+ V NRH A GDA AT + L Sbjct: 134 -------------CGSLGIDVQNRHRAAGDAEATVRLLNKL 161 >UniRef50_A4C086 DNA polymerase III subunit n=2 Tax=Polaribacter RepID=A4C086_9FLAO Length = 361 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 32/181 (17%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER--G 64 ++D+ETTG ++ E+ + D H V+Q + EI + R G Sbjct: 4 ILDIETTGGKFNEEGITEIAIYKFD--------GHSVVDQFISLVNPEKEIQQFVVRLTG 55 Query: 65 LYREALTEQQTAVAWGEVQDWL----RGNTFAGSNPAFDSTIVARQ--RVTYSMPFSPLT 118 + + L ++A + E+ + + T N FD I++ + R+ Y + L Sbjct: 56 INNKML---RSAPKFYEIAKRIIEITKDCTLVAHNTTFDYRILSTEFDRLGYDFNRNTLC 112 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + D +Y+ GKL + LG+P+ +RH A GDA AT F + Sbjct: 113 TVELSKQLILDQPSYSLGKL-------------TKALGIPMTDRHRASGDALATVQLFKL 159 Query: 179 L 179 L Sbjct: 160 L 160 >UniRef50_Q1QZ77 Exonuclease n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QZ77_CHRSD Length = 205 Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 20/190 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGY 60 ++I +D ETT LD A V + + V G L + +++ + ++ I+G Sbjct: 28 GSEVIALDCETTDLDPRQADLVAIAAVKVRDGRVLTSESLDLRLQRPDSLSSDSIRIHGL 87 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPL 117 RG+ + L + A + D++ G +D ++ R R + +P + Sbjct: 88 --RGV--DLLGGEALGDALNTLLDFIGNRPLVGWCIDYDVAVINRHLRPRTGFDLPNRTI 143 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGL--DAVAERLGVPVVNRHSAIGDAAATAFC 175 V R+ YA + P L +A++E LGVPV+ RH+A+GDA TA Sbjct: 144 DVCRL----------YARERRRAQPDVEPDLRFEAMSEALGVPVMGRHTALGDAVTTALM 193 Query: 176 FDMLRHTAAA 185 + L AA Sbjct: 194 YLRLCRGQAA 203 >UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CLT9_9FLAO Length = 375 Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 74/190 (38%), Gaps = 49/190 (25%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHIT--------VEQLAAADPKAMEI 57 V+D+ETTG +D E+ + D E + F+ I V++L DPK + Sbjct: 5 VLDIETTGGKFDEEGITEIAIHRFDGHEVVDTFISLINPERPIQPYVQKLTGIDPKMV-- 62 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWL----RGNTFAGSNPAFDSTIVARQ--RVTYS 111 QTA + +V + R + N FD I+ + R+ Y+ Sbjct: 63 ----------------QTAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYN 106 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 L + + D +++ GKL LG+PV NRH A GDA A Sbjct: 107 FERKTLCTVDLSQRLIPDAESHSLGKL-------------VRSLGIPVSNRHRANGDALA 153 Query: 172 TAFCFDMLRH 181 T +L+H Sbjct: 154 T---LKLLQH 160 >UniRef50_A8TQX4 DNA polymerase III, epsilon subunit n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQX4_9PROT Length = 458 Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 35/182 (19%) Query: 6 IVVDLETTGLDYDTA-------LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 I +D+ETTGLD A +P+ G+L D P I + ++ I+ Sbjct: 15 IAIDIETTGLDASRAHAVQFGAIPIAKGVLKPDDACEQMLNPGIPIPS------SSIAIH 68 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA----RQRVTYSMPF 114 G + + R A T W + + G + FD T++A R+++ + P Sbjct: 69 GITD-AMVRNAPTLSDV---WPNLVGQWKNRVVIGHSIGFDLTVLAAEAKRKKLDWQKP- 123 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 R R+ LA AA L LDA+A L + NRH A+GDA A Sbjct: 124 ------RALCVRM--LATIAAPTL-----ASHSLDALATWLNLETRNRHRALGDAEAAGL 170 Query: 175 CF 176 F Sbjct: 171 IF 172 >UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus RepID=C7RGM9_ANAPD Length = 1365 Score = 42.4 bits (98), Expect = 0.008, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 20/176 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V DLETTGL E+G V+ G+ + ++ + K +EI G Sbjct: 347 ESFVVFDLETTGLSRYKDRITEIGACRVEGGKITEIYNELVNPEMVIPE-KIIEITGITN 405 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + ++ T ++ + D+ + + G N FD V + F+P+ + + Sbjct: 406 E-MVKDCPTIEEVLPGF---LDFCKDSILVGQNTDFDVGFVRENCHRMGLDFNPIYLDTL 461 Query: 123 WHHR--LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 R +D+ ++ LD +A +L +P N H A DA ATA F Sbjct: 462 PMARALFSDMKKFS-------------LDKIARKLEIPAFNHHRASDDARATAQIF 504 >UniRef50_A3J795 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J795_9FLAO Length = 202 Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 18/175 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY--FVPHITVEQLAAADPKAMEING 59 K+ +V D ETTGLDY + + +G + ++ + + F+ ++ + A+ ++ I+G Sbjct: 31 KKRYVVFDCETTGLDYKSDRILSIGAVAIENNQIIVGDFMEVFLLQDVFKAE--SVPIHG 88 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + G E + E + + + E +++ T G + FD ++ + + L V Sbjct: 89 ILKEG-KEEKIVEAEAIIRFLE---FIKDATLVGHHVDFDIEMI-------NQGLARLEV 137 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELE-GLDAVAERLGVPVVNRHSAIGDAAATA 173 G++ + + Y KL P E LD + + + +RH+A GDA TA Sbjct: 138 GKLKNQAMDTDVMYQ--KLKYLPQEQHSSLDELCDIYKIRKSDRHTASGDAFITA 190 >UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4KA24_THASP Length = 769 Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 78/180 (43%), Gaps = 33/180 (18%) Query: 7 VVDLETTGLDYDTALPV-EVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 V D ETTGL+ + +VG + G+ L + EQL DP ER L Sbjct: 581 VFDTETTGLNPSQGDEIIQVGATRILNGKLLRAE---SFEQLV--DP---------ERPL 626 Query: 66 YREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDS----TIVARQRVTYSMPFSPLT-- 118 E +A G + LRG T PAF + T++ + M F L Sbjct: 627 APE------SAKIHGITSEMLRGQPTIDKVLPAFHAFAADTVLIAHNAAFDMRFLQLKEE 680 Query: 119 -VGRVWHHRLADLAAYAAGKLNIDPT-ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 G + H + D +A + P E L+A+AERLG+ +V RH+A+GDA TA F Sbjct: 681 QTGLRFDHPVIDTLLLSA---VVHPNQESHRLEAIAERLGLTIVGRHTALGDAIVTAEVF 737 >UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XHM4_9FLAO Length = 221 Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 15/177 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGE-SLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V D ETTG + + +G L + + SL + V+Q + +A+ I+G Sbjct: 35 RFVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQ-EVFNEEAVAIHGILR 93 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV--ARQRVTYSMPFSPLTVG 120 + ++E++ A+ E ++ G + FD I+ A +R+ + T Sbjct: 94 ENRKYKKVSEEEAVKAFLE---FIGDAILVGHHVGFDIGIINYALKRLGAPKLKNKFTDT 150 Query: 121 RVWHHRLADLAAYAAGKLNI-DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 V + R L +NI DP ++ LD + E L + +RH A+GDA TA F Sbjct: 151 GVLYKRTVHL-------VNITDPNKVYTLDDLCEELNIAKTDRHKAMGDAYITALAF 200 >UniRef50_A1TZ29 DNA polymerase III, epsilon subunit n=3 Tax=Marinobacter RepID=A1TZ29_MARAV Length = 235 Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 25/177 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVE-QLAAADPKAMEINGYYE 62 +LIV+DLETTGL+ + +G + ++ G V H+ + L P+ Sbjct: 40 RLIVLDLETTGLNASKDEVIAIGAVAIEGG-----VIHLNDQFDLILRRPELDIRETVLI 94 Query: 63 RGLYREALT---EQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA---RQRVTYSMPFSP 116 G+ EALT E Q A+ + + +W+ G+ + AFD + + ++ Y++P Sbjct: 95 HGIGPEALTQGYETQDALLY--LLEWMNGDPILAYHSAFDQKFLEKTLKSQLGYTLP--- 149 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 VW D+A + GLD A+ G+ + RH A DA TA Sbjct: 150 ----HVW----MDVAELMPAFFPKATIKGRGLDDWADVFGLEISERHHAAADALVTA 198 >UniRef50_C6P477 DNA polymerase III, epsilon subunit n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P477_9PROT Length = 235 Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 15/177 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGE-SLYFVPHITVEQLAAADPKAMEINGYYE 62 +++VVD+ETTGL+ T + +G + V G +L + ++Q ++D + + ++G Sbjct: 42 RVVVVDVETTGLNLITDTLISIGAVAVVNGRIALGDSFSVVLKQQESSDKENILVHGISS 101 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R+ + + + + E +L + + AFD T++ R Y +G Sbjct: 102 TA-QRDGVDPVEALLTFLE---YLGKSRLIAFHVAFDETMIRRAMRQY--------LGLS 149 Query: 123 WHHRLADLAAYAAGKLNIDPTELEG-LDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H DL AY LN E LD R + + RH+A+ DA ATA F + Sbjct: 150 FKHEWLDL-AYVMPALNRSLMENHRVLDDWIGRFNIHIEARHNALADALATAQLFQI 205 >UniRef50_B7V8D9 Probable nuclease n=6 Tax=Pseudomonas aeruginosa RepID=B7V8D9_PSEA8 Length = 208 Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 16/179 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGY 60 A+++I +DLETT LD A + +G + V G+ + + VE + D +++ I+ Sbjct: 29 AEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKL 88 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV---ARQRVTYSMPFSPL 117 L + EQ A +V ++ G +FD ++ RQ + + + Sbjct: 89 RRADLEGQLQLEQ----ALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSI 144 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + ++H +++ A L D +A L VPV RH+A+GDA A A F Sbjct: 145 EISSLYHRKVSRHFPDAHIDLR--------FDTLARALDVPVSGRHTALGDAQAVALMF 195 >UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJN1_9PROT Length = 735 Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 39/183 (21%) Query: 7 VVDLETTGLDYDTALPV-EVGLLNVDTGESLYFVPHITVEQLAAAD----PKAMEINGYY 61 V D ETTG++ + ++G + + G L + +QL + P+ + I+G Sbjct: 547 VFDTETTGMEPAAGDEIIQIGAVRIVNGRLLR---NENFDQLVDPERFIRPEGIRIHGIS 603 Query: 62 E---RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA----RQRVTYSMP- 113 + RG + V + D+ N AFD + R V +S P Sbjct: 604 DDMVRG-------QPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFSQPV 656 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 L + V H E LD++AERLG+ + +RH+A+GDA ATA Sbjct: 657 LDTLLLSGVLHPN----------------QESHQLDSIAERLGIGIEDRHNALGDACATA 700 Query: 174 FCF 176 F Sbjct: 701 EVF 703 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust. Identities = 18/29 (62%), Positives = 23/29 (79%) Query: 148 LDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L+A+AERLG+ VV RH+A+GDA TA F Sbjct: 674 LEAIAERLGITVVGRHTALGDAMVTAEVF 702 >UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (Modular protein) n=2 Tax=Burkholderiales RepID=B3R8V7_CUPTR Length = 532 Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 25/173 (14%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++ ++ VDLETTG D E+G++ V P VE DP M I + Sbjct: 29 LSRPIVFVDLETTGADAQRDRITEIGVVEVG--------PDGIVEWETLLDP-GMSIPPF 79 Query: 61 YER--GLYREALTEQQTAVAWGE-VQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +R G+ + + Q T + E + + L+G F N FD + + F Sbjct: 80 IQRMTGISDDMVRGQPTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFR-- 137 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPT-ELEGLDAVAERLGVPVVNRHSAIGDA 169 AD+ ++ P+ E GLDA+ R G+ RH A+ DA Sbjct: 138 ----------ADVLCTVRLSRSLFPSVERHGLDALIARFGLTPKGRHRALADA 180 >UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flavobacteria RepID=A5FH18_FLAJ1 Length = 209 Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 34/186 (18%) Query: 4 QLIVVDLETTGLDYDT-------ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME 56 + +V+D ETTG DY+ AL ++ G+++V +Y D + Sbjct: 24 RFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYL-------HQDHYDKSTAQ 76 Query: 57 INGYYERGLYREALTEQQTAV-AWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 I+G + ++ L ++ T + A + D+L + + FD T++ + +P Sbjct: 77 IHG-----ILKDLLVKRPTELEALQQFLDFLGDSIIIAHHTVFDVTMINKALERNGLP-- 129 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELE-----GLDAVAERLGVPVVNRHSAIGDAA 170 LT ++ D AY K I E LD +A++ + +RH+A+GDA Sbjct: 130 QLT------NKTLD-TAYLYKKTLIQSHLFERKDHYTLDDLADKFDISKKDRHTALGDAY 182 Query: 171 ATAFCF 176 TA F Sbjct: 183 ITAIAF 188 >UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha subunit (Fragment) n=1 Tax=Oribacterium sinus F0268 RepID=C2KW36_9FIRM Length = 821 Score = 40.4 bits (93), Expect = 0.033, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 36/183 (19%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGE-----SLYFVPHITV----EQLAAAD 51 ++ +V DLETTG D +E+G + ++ G+ ++ P + + QL + D Sbjct: 514 LSSTTVVFDLETTGFDPRVNHIIEIGAVKIENGKIIDRMDVFVNPGVPIPFRITQLTSID 573 Query: 52 PK-AMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY 110 M+ G E + D+ + N FD V+ + Sbjct: 574 DSMVMDAKGIEE---------------VLPQFLDFAKDAILVAHNADFDYHFVSTKAKAL 618 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 ++PFS + V A +L + LD VA+ L + +++ H A+ DA Sbjct: 619 NIPFSAPVIDTV-----------ALSRLLLPRLNRFKLDTVAKELKIELLHHHRAVDDAE 667 Query: 171 ATA 173 ATA Sbjct: 668 ATA 670 >UniRef50_B8ILM6 Histidine kinase n=8 Tax=Alphaproteobacteria RepID=B8ILM6_METNO Length = 453 Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 79 WGEVQDWLRGNTFAGSNPAFDSTIVARQR---VTYSMPFSPLTVGRVWHHRLADLAAYAA 135 WGE W R AGS P +IV R R V + P + + GR W + DLA AA Sbjct: 106 WGEAPGWFRAAVPAGSGPPAMRSIVYRGRVIGVATAWPEAAASAGRAWRQ-VRDLAGIAA 164 Query: 136 GKLN 139 G + Sbjct: 165 GMVG 168 >UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HRT4_9SPHI Length = 456 Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 40/188 (21%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY-- 61 + +VD+ETTG T E+ +L + GE + +E+ + +I Y Sbjct: 2 EFAIVDIETTGGAASTCGITEIAIL-IHDGEKV-------IEEFESLINPEQDIPTYITG 53 Query: 62 ----ERGLYREALT-EQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 + + +A T E+ + W D L G F + FD V R ++ Sbjct: 54 LTGIDNSMVSDAPTFEELSDKLW----DLLHGRVFVAHSVNFDYGFV---RACFNAIGRE 106 Query: 117 LTVGRVWHHRLAD-----LAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 V ++ RLA L++Y+ G+ + E +P++ RH A+GDA A Sbjct: 107 FKVDKLCTVRLARKIIPGLSSYSLGR-------------ICETQKIPILARHRAMGDARA 153 Query: 172 TAFCFDML 179 TA FD + Sbjct: 154 TAILFDQM 161 >UniRef50_Q0RWX6 Putative uncharacterized protein n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0RWX6_RHOSR Length = 90 Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN-RHSAIGDAAAT 172 F + + WH AD+ AG L I PT + G+ V N RHSA A A Sbjct: 8 FGEVNLSPTWHQS-ADIRQLTAGALGIPPTHTPTAEQTCNLWGISVRNARHSAAQMAKAA 66 Query: 173 AFCFDMLRHTAAA 185 A CFD L H AAA Sbjct: 67 AACFDALEHFAAA 79 >UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha H16 RepID=Q0JYK3_RALEH Length = 220 Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 22/180 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++ +V D+ETTGLD + +E+G + V+ + + + V+ K E+ G Sbjct: 48 LPERFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVLVKPSRKVPKKITELTGI 107 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTF-AGSNPAFDSTIVARQRVTYSMPFS-PLT 118 + E ++ + + + LR +F A + AF S + +T++ P S L Sbjct: 108 TPEMIEAEGVSLESAVQDFAKFAGNLRLVSFNAEFDMAFISKAAGKSSITFANPVSCALK 167 Query: 119 VG-RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDA--AATAFC 175 + R W R + A A N+D +++ H A+GD AA +C Sbjct: 168 MSRRAWPDRKSYRLAEIAKDGNLDTSDM-----------------HRALGDCQRAAIVYC 210 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 39.7 bits (91), Expect = 0.058, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 16/172 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ETTGLD +E+G + + G+ + H ++ ++ EI G + Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQ-IVDEYHTLIKPSREISRRSSEITGITQEM 416 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E+ E +L + N FD + R + M G W Sbjct: 417 LENKRSIEE----VLPEFLGFLENSIIVAHNANFDYRFL-RLWIKKVM-------GLDWE 464 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 D A A L + LD+V E+LG+ H A+ DA TA F Sbjct: 465 RPYIDTLALAKSLLKMRSYS---LDSVVEKLGLGPFRHHRALDDARVTAQVF 513 >UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTI9_9FIRM Length = 828 Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 17/179 (9%) Query: 7 VVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 VVDLETTG D +++G + ++ G+ L H + P + + Sbjct: 10 VVDLETTGSHLDQGDQIIQIGAVLIEDGQVL--AQHSMLLNPERNIPTHITAITGIQSDQ 67 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 ++A T Q A W E L+ F N FD T + + + F P + V Sbjct: 68 VQDAPTFSQVAGLWYER---LKDCFFVAHNLGFDLTFLQAKFAEQGLDFQPPALDTV--- 121 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 +LA + A N L +++ G+ + H A+GDA TA D+L H AA Sbjct: 122 QLAKIFLPQAPGFN--------LQDLSQFFGLNFQDAHDALGDARMTAHLLDVLAHQAA 172 >UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit n=4 Tax=Lactococcus lactis RepID=D2BLE9_LACLK Length = 794 Score = 39.3 bits (90), Expect = 0.074, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 27/173 (15%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGE-----SLYFVPHITVEQLAAADPKAMEINGYY 61 VVDLE T +++G++ V+ GE S PH E L P+ E+ G Sbjct: 9 VVDLEATDAHSSENKIIQIGIVLVEDGEIVETFSTEVNPH---EPLL---PRISELTGLS 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ L T + + G+V++ L + F N FD ++ + + + F+ + R Sbjct: 63 DKQLK----TAPEFSEVAGKVRELLTDSVFVAHNARFDYGLLEKSFLNAGLEFNEML--R 116 Query: 122 VWHHRLADLAAYAAGKLNIDPT-ELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 V DLA PT E GL++++E+L + + H+A+ DA ATA Sbjct: 117 V---DTVDLARV------FYPTFEKYGLESLSEKLDLAHDHPHAAVSDAYATA 160 >UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A7U0_THEAQ Length = 627 Score = 38.9 bits (89), Expect = 0.087, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 23/170 (13%) Query: 9 DLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYYERGLYR 67 DLETTGLD + +G +++ L + + PKA E++G L Sbjct: 447 DLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTWEMLKD 506 Query: 68 EALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRL 127 + E+ + +L G+ N AFD + ++V P PL + H L Sbjct: 507 KPKLEE----VLPAFRAFLEGSVLVAHNGAFDMAFL--RKVGIDQP--PLVDTLLLAHLL 558 Query: 128 -ADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 DL + L+ +AER GVPV+ RH+A+GDA TA + Sbjct: 559 FPDLKDHR-------------LERLAERFGVPVLGRHTALGDALMTAEVY 595 >UniRef50_B8R965 Putative DNA polymerase III epsilon subunit (Fragment) n=1 Tax=uncultured bacterium 1114 RepID=B8R965_9BACT Length = 312 Score = 38.9 bits (89), Expect = 0.093, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 73/179 (40%), Gaps = 34/179 (18%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA----AADPKAMEINGYYER 63 +D ETTGLD V +G + + G LY P T E L + A I+G + Sbjct: 31 LDTETTGLDPGRDRIVAIGAVRLH-GRRLY--PSRTFETLVRPGISIPASASAIHGIGD- 86 Query: 64 GLYREALTEQQTAVA--WGEVQDWLRGNTFAGSNPAFDSTIVA----RQRVTYSMPFSPL 117 A+ +A W + WL G G + FD ++ R +++ PF+ Sbjct: 87 -----AMVAGAPGMAEIWPRLSPWLAGRVVLGHHVDFDLAMIGAAARRHGFSWTEPFALD 141 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 T A L A G +D LD A+R GV + RHSA+GD+ A + Sbjct: 142 T---------ARLVAALDGSSPVD------LDEAAQRHGVTLEGRHSALGDSLIAARVY 185 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9ZX22 Gp57 n=2 Tax=unclassified Siphoviridae RepID=Q9Z... 196 2e-49 UniRef50_Q854A2 Gp164 n=1 Tax=Mycobacterium phage Omega RepID=Q8... 173 2e-42 UniRef50_B5FC60 DNA polymerase III subunit epsilon n=58 Tax=Vibr... 148 9e-35 UniRef50_A0M2M5 Exonuclease family protein n=1 Tax=Gramella fors... 148 9e-35 UniRef50_B1MC17 Putative uncharacterized protein n=1 Tax=Mycobac... 143 4e-33 UniRef50_Q6XNA5 Putative uncharacterized protein n=1 Tax=Rhodoco... 141 2e-32 UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydroge... 139 4e-32 UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokd... 134 1e-30 UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB5... 129 4e-29 UniRef50_A4C086 DNA polymerase III subunit n=2 Tax=Polaribacter ... 126 5e-28 UniRef50_UPI0001AEF4FD exonuclease RNase T and DNA polymerase II... 123 4e-27 UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 T... 122 5e-27 UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 102 7e-21 Sequences not found previously or not previously below threshold: UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeu... 117 2e-25 UniRef50_A3J795 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 114 1e-24 UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidete... 108 1e-22 UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flav... 106 5e-22 UniRef50_A6D4K1 DNA polymerase III subunit epsilon n=1 Tax=Vibri... 105 1e-21 UniRef50_A4CKG8 DNA polymerase III, epsilon subunit n=1 Tax=Robi... 102 5e-21 UniRef50_Q2BJ82 DNA polymerase III subunit epsilon n=1 Tax=Neptu... 102 6e-21 UniRef50_A8ES54 DNA polymerase III, epsilon subunit n=4 Tax=Epsi... 102 7e-21 UniRef50_A4ASW0 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 101 1e-20 UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capn... 99 4e-20 UniRef50_Q1QZ77 Exonuclease n=1 Tax=Chromohalobacter salexigens ... 100 4e-20 UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capn... 100 5e-20 UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Strept... 99 6e-20 UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth... 96 7e-19 UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 96 7e-19 UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit... 95 8e-19 UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult... 95 1e-18 UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive... 95 1e-18 UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI... 95 2e-18 UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 95 2e-18 UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 94 2e-18 UniRef50_O67875 Putative uncharacterized protein n=1 Tax=Aquifex... 94 2e-18 UniRef50_B7V8D9 Probable nuclease n=6 Tax=Pseudomonas aeruginosa... 94 2e-18 UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 94 2e-18 UniRef50_C6WZM7 DNA polymerase III epsilon subunit n=2 Tax=Flavo... 94 2e-18 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 94 3e-18 UniRef50_Q31GK8 Exonuclease n=8 Tax=Bacteria RepID=Q31GK8_THICR 93 4e-18 UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili... 93 4e-18 UniRef50_B4WXR6 Exonuclease superfamily n=1 Tax=Alcanivorax sp. ... 93 5e-18 UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit... 92 8e-18 UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostri... 92 9e-18 UniRef50_A5FFY1 Exonuclease, RNase T and DNA polymerase III n=1 ... 92 9e-18 UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia... 92 1e-17 UniRef50_O29290 DNA polymerase III, subunit epsilon (DnaQ) n=1 T... 91 1e-17 UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robigin... 91 1e-17 UniRef50_Q3B459 DNA polymerase III, epsilon subunit n=8 Tax=Chlo... 91 2e-17 UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 91 2e-17 UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 90 3e-17 UniRef50_A5IJS5 DNA polymerase III, epsilon subunit n=6 Tax=Ther... 90 3e-17 UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermane... 90 3e-17 UniRef50_C8SCL6 DNA polymerase III, epsilon subunit n=1 Tax=Ferr... 90 4e-17 UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flav... 90 4e-17 UniRef50_C0QPN1 DNA polymerase III subunit epsilon n=1 Tax=Perse... 90 4e-17 UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruege... 89 7e-17 UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha s... 89 7e-17 UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para... 88 1e-16 UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=... 88 1e-16 UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 88 1e-16 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 88 1e-16 UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha ... 88 1e-16 UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polyme... 88 2e-16 UniRef50_B0UN90 Exonuclease RNase T and DNA polymerase III n=3 T... 88 2e-16 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 88 2e-16 UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrot... 88 2e-16 UniRef50_Q0VMJ4 Nuclease, putative n=1 Tax=Alcanivorax borkumens... 87 2e-16 UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia... 87 3e-16 UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero... 87 3e-16 UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flex... 87 3e-16 UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphi... 87 3e-16 UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Coryneb... 87 3e-16 UniRef50_C7G8J4 Putative DNA polymerase III, alpha chain n=1 Tax... 87 3e-16 UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba... 86 4e-16 UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive... 86 4e-16 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 86 5e-16 UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Trepon... 86 5e-16 UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=... 86 5e-16 UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algorip... 86 5e-16 UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein... 86 6e-16 UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase II... 86 6e-16 UniRef50_A1VJH5 Exonuclease, RNase T and DNA polymerase III n=8 ... 86 7e-16 UniRef50_C0GM30 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 86 7e-16 UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacte... 86 8e-16 UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macroco... 86 8e-16 UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit... 85 8e-16 UniRef50_A6W8W5 Exonuclease RNase T and DNA polymerase III n=1 T... 85 9e-16 UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Fl... 85 9e-16 UniRef50_A3HVK4 DNA polymerase III, epsilon subunit n=1 Tax=Algo... 85 9e-16 UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia ... 85 9e-16 UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0... 85 1e-15 UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para... 85 1e-15 UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu... 85 1e-15 UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacte... 85 1e-15 UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridi... 85 1e-15 UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A... 85 1e-15 UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Pro... 85 2e-15 UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothio... 85 2e-15 UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhod... 85 2e-15 UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 85 2e-15 UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam... 85 2e-15 UniRef50_Q89MS5 Blr4117 protein n=1 Tax=Bradyrhizobium japonicum... 85 2e-15 UniRef50_A3V111 Exonuclease, DNA polymerase III, epsilon subunit... 85 2e-15 UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphi... 84 2e-15 UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidob... 84 2e-15 UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 84 2e-15 UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gam... 84 2e-15 UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=... 84 2e-15 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 84 2e-15 UniRef50_B8R965 Putative DNA polymerase III epsilon subunit (Fra... 84 3e-15 UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clost... 84 3e-15 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 84 3e-15 UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodoth... 83 3e-15 UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo... 83 4e-15 UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2 83 4e-15 UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ... 83 4e-15 UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida... 83 4e-15 UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostri... 83 4e-15 UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micr... 83 4e-15 UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia ... 83 5e-15 UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kord... 83 5e-15 UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum cen... 83 6e-15 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 83 6e-15 UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot... 83 6e-15 UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli R... 83 6e-15 UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodo... 83 6e-15 UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo... 83 6e-15 UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Delt... 83 6e-15 UniRef50_D2QAZ6 DnaQ DNA polymerase III alpha subunit n=4 Tax=Bi... 83 7e-15 UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquif... 83 7e-15 UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Beta... 82 7e-15 UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brev... 82 7e-15 UniRef50_Q67M39 DNA polymerase III-like protein n=1 Tax=Symbioba... 82 8e-15 UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte... 82 9e-15 UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Beta... 82 1e-14 UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy... 82 1e-14 UniRef50_Q3AAH9 Putative DNA polymerase III, epsilon subunit n=1... 82 1e-14 UniRef50_B2A7J4 DNA polymerase III, epsilon subunit n=1 Tax=Natr... 82 1e-14 UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 82 1e-14 UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 81 1e-14 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 81 1e-14 UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ... 81 1e-14 UniRef50_D0RQR6 DNA polymerase III PolC-type (PolIII) n=1 Tax=al... 81 1e-14 UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 81 1e-14 UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG en... 81 2e-14 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 81 2e-14 UniRef50_A7HHL1 Exonuclease RNase T and DNA polymerase III n=1 T... 81 2e-14 UniRef50_D2L4P4 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 81 2e-14 UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, pu... 81 2e-14 UniRef50_C5CEK5 DNA polymerase III, epsilon subunit n=1 Tax=Kosm... 81 2e-14 UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolb... 81 2e-14 UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydr... 81 2e-14 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 81 2e-14 UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostri... 81 2e-14 UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 T... 81 2e-14 UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Deth... 81 2e-14 UniRef50_A0KJY7 DNA polymerase III, epsilon subunit n=2 Tax=Aero... 81 2e-14 UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rick... 81 2e-14 UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseu... 81 3e-14 UniRef50_Q1NJL0 DNA polymerase III, epsilon subunit n=1 Tax=delt... 80 3e-14 UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alp... 80 3e-14 UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholep... 80 3e-14 UniRef50_P96171 DNA for Na+/glucose symporter, n=1 Tax=Vibrio pa... 80 4e-14 UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=... 80 4e-14 UniRef50_C0WGE7 Possible exonuclease n=2 Tax=Corynebacterium Rep... 80 4e-14 UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosm... 80 5e-14 UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostri... 80 5e-14 UniRef50_Q1QDN3 Exonuclease n=3 Tax=Psychrobacter RepID=Q1QDN3_P... 80 5e-14 UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucl... 80 5e-14 UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asti... 80 5e-14 UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge... 80 6e-14 UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bact... 80 6e-14 UniRef50_A6CHW6 DNA polymerase III, alpha subunit n=1 Tax=Bacill... 80 6e-14 UniRef50_C8X5R2 Exonuclease RNase T and DNA polymerase III n=1 T... 80 6e-14 UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=... 79 7e-14 UniRef50_C8P6J0 Putative uncharacterized protein n=1 Tax=Lactoba... 79 8e-14 UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Euba... 79 8e-14 UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamm... 79 8e-14 UniRef50_C0ECE2 Putative uncharacterized protein n=1 Tax=Clostri... 79 8e-14 UniRef50_C2D7T6 3'-5' exonuclease and CRISPR-associated Cas2 fam... 79 8e-14 UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caul... 79 8e-14 UniRef50_C6P477 DNA polymerase III, epsilon subunit n=1 Tax=Side... 79 8e-14 UniRef50_C3XF27 DNA polymerase III subunit epsilon n=1 Tax=Helic... 79 9e-14 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 79 9e-14 UniRef50_D1XX28 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1XX2... 79 1e-13 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 79 1e-13 UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bactero... 79 1e-13 UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemma... 78 1e-13 UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alic... 78 1e-13 UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Pro... 78 1e-13 UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51... 78 1e-13 UniRef50_Q8D3D2 DnaQ protein n=1 Tax=Wigglesworthia glossinidia ... 78 1e-13 UniRef50_B1VHF1 Putative exonuclease n=1 Tax=Corynebacterium ure... 78 1e-13 UniRef50_D1B3F1 DNA polymerase III, epsilon subunit n=1 Tax=Sulf... 78 1e-13 UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cell... 78 2e-13 UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlam... 78 2e-13 UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 78 2e-13 UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dich... 78 2e-13 UniRef50_B3R0A4 DNA polymerase III alpha subunit n=1 Tax=Candida... 78 2e-13 UniRef50_B6JP45 DNA polymerase III epsilon subunit n=17 Tax=Heli... 78 2e-13 UniRef50_Q5QUI3 3'-5' exonuclease n=1 Tax=Idiomarina loihiensis ... 78 2e-13 UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Rose... 78 2e-13 UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Coryn... 78 2e-13 UniRef50_A4U2R7 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 78 2e-13 UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Nei... 78 2e-13 UniRef50_B8G6F9 DNA polymerase III, epsilon subunit n=3 Tax=Chlo... 77 2e-13 UniRef50_UPI0001B583F7 DNA polymerase III n=2 Tax=Streptomyces R... 77 2e-13 UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit... 77 3e-13 UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gam... 77 3e-13 UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=1... 77 3e-13 UniRef50_Q2B6U9 Putative uncharacterized protein n=1 Tax=Bacillu... 77 3e-13 UniRef50_Q1JYJ5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 77 3e-13 UniRef50_Q7VGH4 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7... 77 3e-13 UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit... 77 3e-13 UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 77 3e-13 UniRef50_C3XME5 DNA polymerase III subunit epsilon n=1 Tax=Helic... 77 3e-13 UniRef50_Q0EZC1 Probable DNA polymerase III (Epsilon chain) prot... 77 3e-13 UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonel... 77 3e-13 UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 77 4e-13 UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio cross... 77 4e-13 UniRef50_A1TZ29 DNA polymerase III, epsilon subunit n=3 Tax=Mari... 76 4e-13 UniRef50_Q11G58 DNA polymerase III, epsilon subunit n=1 Tax=Chel... 76 4e-13 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 76 4e-13 UniRef50_Q2VYH6 DNA polymerase III, epsilon subunit and related ... 76 4e-13 UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerof... 76 4e-13 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 76 5e-13 UniRef50_B4AHF2 DNA polymerase III PolC-type (PolIII) n=1 Tax=Ba... 76 5e-13 UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xyla... 76 6e-13 UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrog... 76 6e-13 UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alterom... 76 6e-13 UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut ... 76 6e-13 UniRef50_A6Q1S7 DNA polymerase III, epsilon subunit n=2 Tax=Epsi... 76 6e-13 UniRef50_C9Z7X4 Putative exonuclease n=1 Tax=Streptomyces scabie... 76 6e-13 UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class... 76 6e-13 UniRef50_B4RBF9 DNA polymerase III epsilon chain n=3 Tax=Alphapr... 76 6e-13 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 76 6e-13 UniRef50_A8LH88 Exonuclease RNase T and DNA polymerase III n=2 T... 76 7e-13 UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte... 76 7e-13 UniRef50_A3EQH5 DNA polymerase III, epsilon subunit n=2 Tax=Lept... 76 7e-13 UniRef50_UPI0000D530A7 DNA polymerase III subunit epsilon n=1 Ta... 76 7e-13 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 76 7e-13 UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anap... 76 7e-13 UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 fam... 76 7e-13 UniRef50_Q2RWQ8 Exonuclease n=1 Tax=Rhodospirillum rubrum ATCC 1... 76 8e-13 UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria Rep... 76 8e-13 UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrh... 76 8e-13 UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 T... 76 8e-13 UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid... 76 8e-13 UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bact... 76 8e-13 >UniRef50_Q9ZX22 Gp57 n=2 Tax=unclassified Siphoviridae RepID=Q9ZX22_BPMT4 Length = 177 Score = 196 bits (499), Expect = 2e-49, Method: Composition-based stats. Identities = 103/187 (55%), Positives = 128/187 (68%), Gaps = 10/187 (5%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +QL+VVD ETTGL D A +EV +N+DTG L+FVP +T EQLA A P AM++N Y Sbjct: 1 MTRQLVVVDCETTGLH-DGAAILEVAAVNIDTGAELHFVPFVTREQLAQAQPMAMQMNRY 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 YERG+++ L+ T A+ ++ + L GNTF GSNPAFDS ++A +MP Sbjct: 60 YERGIWQRRLSPDSTDAAYWKLANMLAGNTFGGSNPAFDSRLLA-----AAMPDG----A 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 WHHRLADLAA+ AGKLN+DP EL GLDAV ERLGV V +RHSA+ DA ATA CF +LR Sbjct: 111 PEWHHRLADLAAFTAGKLNLDPVELPGLDAVCERLGVTVSDRHSALADAHATATCFTILR 170 Query: 181 HTAAAHL 187 AA L Sbjct: 171 EIPAAAL 177 >UniRef50_Q854A2 Gp164 n=1 Tax=Mycobacterium phage Omega RepID=Q854A2_9CAUD Length = 178 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 81/190 (42%), Positives = 111/190 (58%), Gaps = 19/190 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M++Q+IVVD ET GL + +E+ +NV+TGE VP +T QL++ +P+A+ IN + Sbjct: 1 MSRQIIVVDTETGGLGPNAP-VLEIAAVNVETGEEFRVVPFVTAAQLSSCEPEALAINRF 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLR----GNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 YER ++ + L + A DWLR GN FAGSNPAFD+ ++A+ Sbjct: 60 YERRVFADML---EDAEGNKNAFDWLRSMLDGNVFAGSNPAFDAPLIAK----------- 105 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L G WHHR L +YAAG L + EL GL+ V E LGV + HSA+GDA ATA CF Sbjct: 106 LLNGEPWHHRKLALESYAAGVLGLPLDELPGLNKVCEILGVENEDPHSALGDARATAECF 165 Query: 177 DMLRHTAAAH 186 +LR A + Sbjct: 166 RILRGMAEQN 175 >UniRef50_B5FC60 DNA polymerase III subunit epsilon n=58 Tax=Vibrionales RepID=B5FC60_VIBFM Length = 213 Score = 148 bits (373), Expect = 9e-35, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 87/182 (47%), Gaps = 16/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGYYE 62 +L+ +D ETT L+ + A V + + + L H+ + + + +++I+ Sbjct: 29 ELVSIDCETTSLNPNHAELVSIAAIKIKNNRVLTSQTIHLKLTPPQSLNSDSIKIHQLRH 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVAR---QRVTYSMPFSPLTV 119 + L+ L+EQQ A ++ +++ G + +D I+ R + ++ +P S + V Sbjct: 89 QDLH-HGLSEQQ---AMTQLLEFIGNRPIVGYHIRYDKKILDRACLRHFSHPLPNSLIEV 144 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++H++L L A L+I+ A+++ LG+P RH A+ DA A A + L Sbjct: 145 SHIYHNKLERLLPNAYYDLSIE--------AISKHLGLPQTERHDALEDAIAAALIYVRL 196 Query: 180 RH 181 H Sbjct: 197 TH 198 >UniRef50_A0M2M5 Exonuclease family protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M2M5_GRAFK Length = 223 Score = 148 bits (373), Expect = 9e-35, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 74/179 (41%), Gaps = 14/179 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + IV D ETTG +YD + +G + ++ + +P+ ++I+G + Sbjct: 38 RFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFLEQKKFNPETVKIHGIIQN 97 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + A + +++ + + FD ++ + +P ++ Sbjct: 98 EKFEKL----SELEALKKFLSYIQNSVLVAHHAGFDMKMINKALSRNGLP-------KLK 146 Query: 124 HHRLADLAAYAAGKLN---IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L Y ++ ID ++ LD +AE + +++RH+A GDA TA F L Sbjct: 147 NKVLDTSILYKKTRIATNFIDRDKIYSLDEIAEAYNIDLIDRHTASGDAYITALIFMKL 205 >UniRef50_B1MC17 Putative uncharacterized protein n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MC17_MYCA9 Length = 182 Score = 143 bits (359), Expect = 4e-33, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 19/188 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYYE 62 L+ +D ETTGL + P E+ ++ L+ + LAAADP ++I+G+++ Sbjct: 3 LVFLDTETTGLHRER-EPWEIAIIRRTAAGQRQLHLCVDVQDLDLAAADPAGLQISGFHK 61 Query: 63 RGLYREALTEQ-----QTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 R Q + A A V +W G T G P FD+ +AR + + Sbjct: 62 RHPQVRLRPLQFPRVFRAAEAVSLVAEWTAGATIVGVIPQFDTECLARMFLAHG------ 115 Query: 118 TVGRVWHHRLADLAAYAAGKL-NIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATA 173 VG W+ L D+ A A +L + T ++++ GV RH+A+GDA Sbjct: 116 -VGPTWNPELVDVVATTAARLRDRGLTPDADYSNLSQQFGVKTPSAAQRHTALGDARWAM 174 Query: 174 FCFDMLRH 181 +D L Sbjct: 175 RWYDRLSE 182 >UniRef50_Q6XNA5 Putative uncharacterized protein n=1 Tax=Rhodococcus erythropolis RepID=Q6XNA5_RHOER Length = 206 Score = 141 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 8/158 (5%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++L+VV + TG D + +EV +++ +G+S F +T EQL ADP + NGYY Sbjct: 3 TRELVVVQVNATGNDPARHVALEVAAVSLVSGKSWDFTVPLTQEQLVDADPSTLRRNGYY 62 Query: 62 ERGLY-REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 RGL R L+ + ++ L GNT G+ P + +AR + Sbjct: 63 RRGLADRADLSRPLLSGRIADLAGALAGNTLGGTAPEESADFLARLF-------RSFDIE 115 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVP 158 WH RLAD+ A AG + T + A G+ Sbjct: 116 PRWHPRLADIGALTAGAFGLAATSIPTFTACCRMWGID 153 >UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVH7_9AQUI Length = 215 Score = 139 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 28/191 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDT---GESLYFVPHITVEQLAAADPKAMEINGY 60 +V D ETTGLD A V +G L V S F + ++L ++EI+G Sbjct: 39 TFVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFHRFVKPKELTRV---SVEIHGI 95 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR---VTYSMPFSPL 117 L ++A + + + +++RG+ G N FD IV + + + L Sbjct: 96 TPHELEKKAESHDRV---LEDFMEYVRGSVLVGFNVEFDRKIVEKYSLKVLGLPLLNYRL 152 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF- 176 V R+W R + L +AE LG+PVV HSA+ DA TA F Sbjct: 153 DVFRLWKKRGGREGS---------------LKDIAEELGIPVVGAHSALDDAYITALVFL 197 Query: 177 DMLRHTAAAHL 187 +L+ A+L Sbjct: 198 KLLKRFRGANL 208 >UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TRJ1_9FLAO Length = 229 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAA-DPKAMEING 59 + +V D ETTGLDY + +G + V G + + + +P + +I+G Sbjct: 42 QNTRFVVFDTETTGLDYKKDRILSLGGVAV-VGNQVIVADTLELFLKQDFYNPDSAQIHG 100 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 ++G Y + A + D++ + G + FD +V + + Sbjct: 101 ILKQGNYLKV----NEKEAIAQCLDFIGTDILVGHHVGFDVAVV-------NQSLKRAGL 149 Query: 120 GRVWHHRLADLAAYAAGKLNIDP---TELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 GR+ + +L Y ++ + LD +AE L +P+ +RH+A GD+ TA F Sbjct: 150 GRLKNRQLDTEILYKRLVHPVNRPLQDKRYTLDELAEALKIPLHDRHTAAGDSLITALAF 209 Query: 177 DMLRH 181 + H Sbjct: 210 IKIVH 214 >UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB51_MYXXD Length = 219 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 60/191 (31%), Positives = 84/191 (43%), Gaps = 17/191 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL----YFVPHITVEQLAAADPKAMEIN 58 + L VDLETTGLD +EV +L VD SL + + +LA A P+A+ + Sbjct: 29 RTLCFVDLETTGLDASRHEVLEVAVLRVD-ARSLKVLAEYEARVKPTRLADAHPEALAVC 87 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 GY + +R+AL Q+ V L G AG N +FD + S S L Sbjct: 88 GYSDEE-WRDALPLQEV---LATVTPLLAGTLVAGHNTSFDWGFLVE-----SYRRSELA 138 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + V +HRL D A+ A L E L+A+A+R G+ H A+ DA Sbjct: 139 LPSVDYHRL-DTASLAWPLLATGEVESLSLNALAKRFGLHRPTPHRAMADARCALEVARC 197 Query: 179 L--RHTAAAHL 187 L R H+ Sbjct: 198 LAVRMARGGHM 208 >UniRef50_A4C086 DNA polymerase III subunit n=2 Tax=Polaribacter RepID=A4C086_9FLAO Length = 361 Score = 126 bits (315), Expect = 5e-28, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 32/183 (17%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER- 63 ++D+ETTG ++ E+ + D H V+Q + EI + R Sbjct: 2 YAILDIETTGGKFNEEGITEIAIYKFD--------GHSVVDQFISLVNPEKEIQQFVVRL 53 Query: 64 -GLYREALTEQQTAVAWGEVQDWL----RGNTFAGSNPAFDSTIVARQR--VTYSMPFSP 116 G+ + L ++A + E+ + + T N FD I++ + + Y + Sbjct: 54 TGINNKML---RSAPKFYEIAKRIIEITKDCTLVAHNTTFDYRILSTEFDRLGYDFNRNT 110 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L + + D +Y+ GKL + LG+P+ +RH A GDA AT F Sbjct: 111 LCTVELSKQLILDQPSYSLGKL-------------TKALGIPMTDRHRASGDALATVQLF 157 Query: 177 DML 179 +L Sbjct: 158 KLL 160 >UniRef50_UPI0001AEF4FD exonuclease RNase T and DNA polymerase III n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AEF4FD Length = 204 Score = 123 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 79/200 (39%), Gaps = 26/200 (13%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + L VD ETTGLD E+ ++ GE+ L ADPKA+EIN Y Sbjct: 9 QSPPLAFVDTETTGLDPFQHDAWEIAVILRKPGETDQESVFYLEPDLINADPKALEINRY 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 +ER + E T + ++ L G GSNP FD+ ++A Y P Sbjct: 69 HER-VKTEDWTWGKPQDVARDLYRLLDGTVLIGSNPPFDADMIANIFGRYYWHPKP---- 123 Query: 121 RVWHHRLADLAAYAAGKL----------------NIDPTELEGLDAVAERLGVPVVNR-- 162 WH+R D+A AAG + P ++ +GV + Sbjct: 124 --WHYRTIDIAILAAGYRHGQAASGAYGGDFLFPDDYPQLPYSSYGLSRAVGVEPPAKDV 181 Query: 163 -HSAIGDAAATAFCFDMLRH 181 H+A+GDA FD + Sbjct: 182 AHTALGDARWARDVFDAVTG 201 >UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 Tax=Haliangium ochraceum DSM 14365 RepID=D0LN23_HALO1 Length = 180 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 51/180 (28%), Positives = 71/180 (39%), Gaps = 13/180 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDT---GESLYFVPHITVEQLAAADPKAMEING 59 + L+ +D ETTGLD + +E+ + V E V + E+L ADP+A+E+NG Sbjct: 2 QPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNG 61 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 Y R + +A++ A E+ L G AG N AFD + L Sbjct: 62 YRRRA-WADAVS---LGDAMAELAPMLEGAVLAGHNVAFDRRFLEAAWDCVGHRPENLD- 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 H D AA A L + L V LGV H A D A+ L Sbjct: 117 -----HHALDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDVRASLGVAQRL 171 >UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XHM4_9FLAO Length = 221 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 19/182 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGE---SLYFVPHITVEQLAAADPKAMEINGY 60 + +V D ETTG + + +G L + + S F ++ E + +A+ I+G Sbjct: 35 RFVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQEVF---NEEAVAIHGI 91 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + ++E++ A +++ G + FD I+ + L Sbjct: 92 LRENRKYKKVSEEE---AVKAFLEFIGDAILVGHHVGFDIGII-------NYALKRLGAP 141 Query: 121 RVWHHRLADLAAYAAGKLNI---DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ + Y + DP ++ LD + E L + +RH A+GDA TA F Sbjct: 142 KLKNKFTDTGVLYKRTVHLVNITDPNKVYTLDDLCEELNIAKTDRHKAMGDAYITALAFL 201 Query: 178 ML 179 + Sbjct: 202 KV 203 >UniRef50_A3J795 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J795_9FLAO Length = 202 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 14/172 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYY 61 K+ +V D ETTGLDY + + +G + ++ + + V L +++ I+G Sbjct: 32 KRYVVFDCETTGLDYKSDRILSIGAVAIENN-QIIVGDFMEVFLLQDVFKAESVPIHGIL 90 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + G + + A A ++++ T G + FD ++ + + L VG+ Sbjct: 91 KEGKEEKIV----EAEAIIRFLEFIKDATLVGHHVDFDIEMI-------NQGLARLEVGK 139 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + + + Y K + + LD + + + +RH+A GDA TA Sbjct: 140 LKNQAMDTDVMYQKLKY-LPQEQHSSLDELCDIYKIRKSDRHTASGDAFITA 190 >UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidetes RepID=A0LZ46_GRAFK Length = 457 Score = 108 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 26/180 (14%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER- 63 ++D+ETTG Y+ E+ + D + V+Q + I + Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGQK--------VVDQFISLVNPEQPIQPFVVNL 53 Query: 64 -GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS--MPFSPLTV 119 G+ + L + + + N FD I+ + L Sbjct: 54 TGINNDMLKNAPKFYEVAKRIVEITEDCILVAHNAKFDYRILRTEFRRLGFEYERKSLCT 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + L +Y+ GKL LG+P+ +RH A GDA AT F ML Sbjct: 114 VELSKKLIPGLPSYSLGKL-------------VRSLGIPLSDRHRAAGDAQATIKLFKML 160 >UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flavobacteria RepID=A5FH18_FLAJ1 Length = 209 Score = 106 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 18/191 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+D ETTG DY+ + +G L + G D +I+G + Sbjct: 24 RFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKSTAQIHGILKD 83 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + D+L + + FD T++ + +P ++ Sbjct: 84 LLVKR----PTELEALQQFLDFLGDSIIIAHHTVFDVTMINKALERNGLP-------QLT 132 Query: 124 HHRLADLAAYAAGKLNIDPTEL---EGLDAVAERLGVPVVNRHSAIGDAAATAFCF---- 176 + L Y + E LD +A++ + +RH+A+GDA TA F Sbjct: 133 NKTLDTAYLYKKTLIQSHLFERKDHYTLDDLADKFDISKKDRHTALGDAYITAIAFLKIV 192 Query: 177 DMLRHTAAAHL 187 LR A L Sbjct: 193 KKLREKKAVSL 203 >UniRef50_A6D4K1 DNA polymerase III subunit epsilon n=1 Tax=Vibrio shilonii AK1 RepID=A6D4K1_9VIBR Length = 176 Score = 105 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 74/178 (41%), Gaps = 16/178 (8%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYERGLY 66 +D ETT LD A V + + + P + + + +++I+ L Sbjct: 1 MDCETTSLDPSVAEIVTIAATKIIDNRIITSDPFEVRLSAPKSLGEDSVKIHHITHDEL- 59 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV---ARQRVTYSMPFSPLTVGRVW 123 + ++E+Q A + +++ G + +D I+ A++ + + +P + V +++ Sbjct: 60 KHGISEKQ---AMSALLNFIGNRPLVGYHIRYDKKILDRAAKKHLGFPLPNELIEVSQIY 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + +L L L L+A+ L +P ++H A+ DA A A + L Sbjct: 117 NDKLLKLLPNGYFDL--------SLEAICRHLQIPNYHKHDALEDAKAAAMVYLKLTR 166 >UniRef50_A4CKG8 DNA polymerase III, epsilon subunit n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKG8_9FLAO Length = 222 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 20/187 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL---YFVPHITVEQLAAADPKAMEINGYY 61 +V+D ETTG + +G L V G + E+ D ++ I+G Sbjct: 34 FVVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFVKQERF---DRASVPIHGIL 90 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 G + A E+ D+ + G + +FD ++ + G Sbjct: 91 RTGSSERVTERE----ALAELLDFTGQSPVVGHHISFDQAMIQAACQRSGL-------GP 139 Query: 122 VWHHRLADLAAYAAGKLNIDPT---ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + Y + + LD +A++ + +RH+A+GDA TA F Sbjct: 140 LRNPLIDTGLLYGHTLIKSPLLIKKDHYTLDELADKFDISCKDRHTALGDAYITAIAFLN 199 Query: 179 LRHTAAA 185 + A Sbjct: 200 ILELLRA 206 >UniRef50_Q2BJ82 DNA polymerase III subunit epsilon n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ82_9GAMM Length = 209 Score = 102 bits (254), Expect = 6e-21, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 78/182 (42%), Gaps = 16/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYE 62 +++ +D ETT LD V +G + + + L I ++ + +++I+ E Sbjct: 32 EVVSLDCETTSLDVKQGEIVSIGAVKIKGRKVLSSDRLDIKLKPPKSLTGDSIKIHKIRE 91 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPLTV 119 L E A +V +++ G +D ++ + + + +P + + Sbjct: 92 SDLAGGIDIED----ALEQVLEFVGNRPILGYYVNYDIRMLDKFIRPQFGFGLPNKAIEL 147 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 V+H D+ + ++ D ++++L +P++ RH+AIGDA A + L Sbjct: 148 SHVYH----DIIKWK----SVGGNVDLRFDTISKQLDIPMLERHTAIGDALTVALMYVRL 199 Query: 180 RH 181 ++ Sbjct: 200 KY 201 >UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11UG6_CYTH3 Length = 449 Score = 102 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 24/177 (13%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGE-SLYFVPHITVEQLAAADPKAMEINGYYERGL 65 ++D+ETTG +E+ + D + + + I E+ ++ G+ Sbjct: 5 IIDIETTGGHASGNRIIEIAIYKFDGEKITDTYQTLINPERRIPVFITSLT-------GI 57 Query: 66 YREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS--PLTVGRV 122 E + + A E+ D+ R + F N FD T V ++ +MP++ L R+ Sbjct: 58 DTEMVADAPVFADVAREITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYNLPKLCTVRL 117 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L +Y+ G L LG+ V NRH A GDA AT + L Sbjct: 118 SRKIFPGLPSYSLGNL-------------CGSLGIDVQNRHRAAGDAEATVRLLNKL 161 >UniRef50_A8ES54 DNA polymerase III, epsilon subunit n=4 Tax=Epsilonproteobacteria RepID=A8ES54_ARCB4 Length = 203 Score = 102 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 75/185 (40%), Gaps = 20/185 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL---YFVPHITVEQLAAADPKAMEINGY 60 + + +D ETTGL+ + +G + + + L F + + + ++++++ Sbjct: 30 EYVSLDCETTGLNPKKDEILSIGAVLIKDNKILMRKTFNIFLKPSK--DINIESIKVHHL 87 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPL 117 + L E + ++ D++ G FD I+++ Y +P +P+ Sbjct: 88 RQIDLNDALEPE----IGIYQLLDFIGSRPIVGYYIEFDMAIISKYTKKYLGIKLPNTPI 143 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 V +++ + Y L D + + L +PV+ +H A+ DA T+ F Sbjct: 144 EVSSIYYDSRKSTSNYGFIDL--------KFDTIMKNLNIPVLGKHDALNDAIMTSMIFL 195 Query: 178 MLRHT 182 L+ Sbjct: 196 KLKQF 200 >UniRef50_A4ASW0 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4ASW0_9FLAO Length = 222 Score = 101 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 17/179 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGE---SLYFVPHITVEQLAAADPKAMEINGY 60 + IV D ETTGLD + +G ++V +G+ ++ + A +++EI+G Sbjct: 33 RFIVFDTETTGLDIVNDRILSIGAISVFSGKLDIGDSLEIYLKQKIFKA---ESVEIHGI 89 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + G ++ + A ++ + AFD ++ +P Sbjct: 90 LKEG----SIEKHTEEEAIISFLKYIENGILVAHHAAFDIAMINAGLRRMGLP------- 138 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ + L + L D ++ LD ++ +RH++ GDA T + Sbjct: 139 KLKNKVLDTGVLFKKTTLCEDKNKIYSLDYLSGIFKFRNHDRHTSSGDAFLTGMILLKI 197 >UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capnocytophaga RepID=C7M4L1_CAPOD Length = 442 Score = 99 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 26/180 (14%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER- 63 ++D+ETTG Y+ ++ + + H +Q + I + + Sbjct: 2 YAILDIETTGGKYNEEGITDIAIYQFN--------GHEITDQFISLINPERPIQEFVTKL 53 Query: 64 -GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR--VTYSMPFSPLTV 119 G+ + L + + + G N AFD I+ + + Y + L Sbjct: 54 TGINNKMLRNAPKFYEVAKRIVEITTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTTLCT 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + +Y+ GKL LG+PV +RH A GDA AT F L Sbjct: 114 VELSERLIPNKESYSLGKL-------------VRSLGIPVSDRHRASGDALATLKLFKYL 160 >UniRef50_Q1QZ77 Exonuclease n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QZ77_CHRSD Length = 205 Score = 99.5 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 16/187 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 ++I +D ETT LD A V + + V G L + +++ + ++ I+G Sbjct: 30 EVIALDCETTDLDPRQADLVAIAAVKVRDGRVLTSESLDLRLQRPDSLSSDSIRIHGLR- 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPLTV 119 + L + A + D++ G +D ++ R R + +P + V Sbjct: 89 ---GVDLLGGEALGDALNTLLDFIGNRPLVGWCIDYDVAVINRHLRPRTGFDLPNRTIDV 145 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R++ D +A++E LGVPV+ RH+A+GDA TA + L Sbjct: 146 CRLYARERRRAQP--------DVEPDLRFEAMSEALGVPVMGRHTALGDAVTTALMYLRL 197 Query: 180 RHTAAAH 186 AA Sbjct: 198 CRGQAAS 204 >UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M5F0_CAPGI Length = 453 Score = 99.5 bits (246), Expect = 5e-20, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 26/180 (14%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER- 63 ++D+ETTG E+ + D + ++ + +I+ + R Sbjct: 2 YAIIDIETTGGKMGEEAITEIAIYRFDGQK--------VTDRFISLINPEKKIDDFVVRL 53 Query: 64 -GLYRE-ALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS--MPFSPLTV 119 G+ + + + + N +FD +++ + S L Sbjct: 54 TGISNKTVRQAPKFYEVAKRIVEITEDCILVAHNASFDYRVLSLEFRRLGFDYQRSTLCT 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L D +Y+ GKL LG+P++NRH A GDA AT F +L Sbjct: 114 VEMSQRLLPDEPSYSLGKL-------------TRSLGIPLLNRHRANGDAMATVHLFKLL 160 >UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWZ0_STRM9 Length = 1465 Score = 99.2 bits (245), Expect = 6e-20, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 18/185 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 ++ +V D+ETTG +E+G + + G+ L F + + + K +E+ G Sbjct: 402 EEFVVFDIETTGFSPINDKIIEIGAVKLKNGKVLDRFSEFVNPQTIIP--KKIVELTGIN 459 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++++G T N FD ++++ ++ Sbjct: 460 D----NMVKDSDIIDKVMPRFLEFVKGTTLVAHNAKFDVGFISKKCEDLNLETD------ 509 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + K+ +D + LD + +R + + N H A+ DA ATA F L Sbjct: 510 -----FSYIDTLEWSKILVDDVKRFNLDTLTKRFNIKLENHHRAVDDANATAELFKKLLS 564 Query: 182 TAAAH 186 +A+ Sbjct: 565 LVSAN 569 >UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW68_HALOH Length = 1397 Score = 95.7 bits (236), Expect = 7e-19, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 17/177 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGY 60 + +V DLETTGL+ +E+G + V +G+ + F + + + K E+ G Sbjct: 382 SATFVVFDLETTGLNKFKNEIIEIGAVKVKSGKVIDEFSSFVKPGE--SIPNKITELTGI 439 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + R G+ +++ G+ N FD + + G Sbjct: 440 TNEMVSRA----PDIEGVIGDFLEFIDGSILVAHNADFDYGFLQ-------VALKKTGQG 488 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L L + + L+ +A L V + N H A+ DA AT+ F Sbjct: 489 DISYPVLDTL---TLSRALLPDLSNHKLNTLARHLNVRLDNHHRAVEDARATSEIFI 542 >UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=A7HNS3_FERNB Length = 1390 Score = 95.7 bits (236), Expect = 7e-19, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 69/181 (38%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 +V+DLETTGL+ + +E+G + G+ + F + +L + K++ I G E Sbjct: 382 TYVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDEFHTFVRPNKL---NKKSLNITGITE 438 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L ++ ++++ + N FD T + + F+P Sbjct: 439 DML----KDAPDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNP------ 488 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L A L + + LD + + G+ H A+ DA T F L Sbjct: 489 --PYIDTLRLSQA--LLRNKIKSFSLDKLVDHFGLGAFQHHRALDDARVTVNVFWKLIEL 544 Query: 183 A 183 A Sbjct: 545 A 545 >UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit family protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FXM2_9RHIZ Length = 466 Score = 95.3 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 18/178 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYER 63 V D ETTGL V++G + + G+ + T+ P + +I+G + Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASSKIHGITD- 332 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + A A ++ + + N FD + + R + F Sbjct: 333 ---KMVMGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAF--------D 381 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCFDML 179 H + + A + TE LD V ERLG+ + +RH+A+GDA TA + Sbjct: 382 HPIVDTVLVSA---IIFGTTERHMLDVVCERLGIRIEKKDRHTALGDARVTAEAMKRM 436 >UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM31_9BACT Length = 1428 Score = 95.3 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 64/181 (35%), Gaps = 20/181 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTGL+ +E+G + + E L + + E+ +A ++ Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIKMKGSEVLGTYSTFVKPEKELSAMITSLT------- 470 Query: 64 GLYREALTEQQ-TAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 G+ + L+E + E + G N +FD V + G Sbjct: 471 GITEDMLSEARPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKH--------FGGD 522 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 W D A A ++ LD V +RL + + H A DA TA Sbjct: 523 WEMPCIDTLALAKSLF---RSKSYSLDNVVKRLKLGHFDHHRAFEDAKVTAEVLKKFVQL 579 Query: 183 A 183 A Sbjct: 580 A 580 >UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM Length = 1415 Score = 95.3 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 16/176 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D+ETTGL E+G + + G + + P+ ++ R Sbjct: 400 TYVVFDIETTGLSPIRDKITEIGAVKIVDG--IITERFSQLINPQMLIPEKVQE---LTR 454 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 E + D+++ + N FD+ + R + F Sbjct: 455 ITNALVENEPTIEEVAPKFYDFIKDSVLVAHNAKFDTAFIRRVFKENDLDFI-------- 506 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L L + + + T+ L + ++ GV +V H A+ DA ATA F L Sbjct: 507 NPILDTL---SFARATVKDTKKFNLATLCKKFGVSLVGAHRAVNDAEATAHLFIKL 559 >UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA Length = 412 Score = 94.5 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 60/179 (33%), Gaps = 17/179 (9%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEING 59 + +V D ETTGL V + + + G L + P +++ +G Sbjct: 216 SLTFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRPIPAESIRYHG 275 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + V + + ++ N AFD + + + F Sbjct: 276 ITD----DMVVDKPPAGVVLPQFRSYVADAVLVAHNAAFDLKFLRMREKDMGIRFDI--- 328 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + P LD + +R G+ + +RH+A+GDA TA Sbjct: 329 -----PVLDTMIL---SNFLDGPDAGHSLDDICDRYGIEITDRHTALGDAMVTAAVLLR 379 >UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWI2_ALIAD Length = 1440 Score = 94.5 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D ETTGL+ +E+ + V G+ + + ++ + DPK +E+ G Sbjct: 426 EYVVFDTETTGLNAREDTLIEIAAVKVKAGQIVDTYATL-IDPERSLDPKIVELTGITNE 484 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + A + + RG N FD + + + W Sbjct: 485 MVA----GQPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDP--------W 532 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D A A ++ + L + ++ V +VN H A+ D+ ATA F + A Sbjct: 533 EQPVIDTLALA--RVLYPGEKNYKLKTLTQKFSVDLVNHHRALADSEATAKVFVHMLKDA 590 Query: 184 AA 185 A Sbjct: 591 KA 592 >UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=C5CGL7_KOSOT Length = 1430 Score = 94.1 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 63/184 (34%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEING 59 M +V DLETTGLD +E+G + + E + F + E+ K I G Sbjct: 415 MNSIYVVFDLETTGLDPSADEIIEIGAVKLKGTEVIGEFSSFVKPER--NLSEKVTRITG 472 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 +R L + + ++ + + N FD V Sbjct: 473 ISDRELEDA----PSLSEVLPKFLEFCKDSVLVAHNATFDYRFVRNAVKQLY-------- 520 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 W D A + ++ ++ LD V +RL + H A DA TA F L Sbjct: 521 NEDWKLPYIDTLALSK---SLLKSKSYSLDNVVKRLKLGDFEHHRASEDARITAEVFKKL 577 Query: 180 RHTA 183 A Sbjct: 578 LSMA 581 >UniRef50_O67875 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O67875_AQUAE Length = 210 Score = 94.1 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 23/178 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D E T LD A + +G + V E + L + + KA EI+G Sbjct: 36 RFVVFDCEATELDVKKAKLLSIGAVEVKNLEIDLSKSFYEI--LKSDEIKAAEIHGITRE 93 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPLTVG 120 + + ++ + +++G+ G FD ++V + Y + L + Sbjct: 94 DVEKYGKEPKEV---IYDFLKYIKGSVLVGYYVKFDVSLVEKYSIKYFQYPIINYKLDLF 150 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 Y +G+ LD + + LGV + RH+A+ DA TA F Sbjct: 151 SFVKRE------YQSGR---------SLDDLMKELGVEIRARHNALEDAYITALLFLK 193 >UniRef50_B7V8D9 Probable nuclease n=6 Tax=Pseudomonas aeruginosa RepID=B7V8D9_PSEA8 Length = 208 Score = 94.1 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 16/187 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGY 60 A+++I +DLETT LD A + +G + V G+ + + VE + D +++ I+ Sbjct: 29 AEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKL 88 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVAR---QRVTYSMPFSPL 117 + + Q A +V ++ G +FD ++ R Q + + + Sbjct: 89 RR----ADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSI 144 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + ++H +++ A L D +A L VPV RH+A+GDA A A F Sbjct: 145 EISSLYHRKVSRHFPDAHIDLR--------FDTLARALDVPVSGRHTALGDAQAVALMFM 196 Query: 178 MLRHTAA 184 L A Sbjct: 197 RLLKGPA 203 >UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT Length = 726 Score = 94.1 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 22/175 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER- 63 +V D+ETTGL+ E+G + V G+ V++ +A + I + + Sbjct: 422 FVVFDIETTGLNPHQDKITEIGAVKVRNGQ--------IVDRFSAFVNPGVSIPSFIVKL 473 Query: 64 -GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 G+ + + + E ++++G+ N FD + + + L + Sbjct: 474 TGITDDMVKDAPPVEQVLNEFMEFIQGSVLVAHNANFDVGFIKQ--------NAKLMGEK 525 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 V + + L + L+ VA+ L + + N H A+ D+ ATA F Sbjct: 526 VKNPYIDTLELC---RKMFPELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIF 577 >UniRef50_C6WZM7 DNA polymerase III epsilon subunit n=2 Tax=Flavobacteriaceae RepID=C6WZM7_FLAB3 Length = 407 Score = 94.1 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 28/179 (15%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 V+D+E+ G + +E+ + D H V+Q + EI + ++ L Sbjct: 4 VIDIESNGAGFRKESIIEIAVYKYD--------GHEIVDQFISLVNPESEITPFVQK-LT 54 Query: 67 REALTEQQTAVAWGEVQ----DWLRGNTFAGSNPAFDSTIVARQRVTYSMPF--SPLTVG 120 + + +TA + E+ + R G N FD ++ ++ F + L Sbjct: 55 KISPKMVKTAPKFPEIARRVIEITRNTILVGHNIDFDYRMLRQEFKRLGYDFTINTLDTI 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + +Y+ GKL + LG+P+V++H A GDA AT F +L Sbjct: 115 PLAKKLIPEAESYSLGKL-------------VKSLGIPLVDQHRASGDARATLDLFKLL 160 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 93.8 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 64/179 (35%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D ETTGLD +E+G + + G+ + H ++ ++ EI G + Sbjct: 357 TFVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVD-EYHTLIKPSREISRRSSEITGITQE 415 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + E +L + N FD + R + M W Sbjct: 416 MLENKR----SIEEVLPEFLGFLENSIIVAHNANFDYRFL-RLWIKKVMGLD-------W 463 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D A A L + LD+V E+LG+ H A+ DA TA F Sbjct: 464 ERPYIDTLALAKSLLKM---RSYSLDSVVEKLGLGPFRHHRALDDARVTAQVFLRFVEM 519 >UniRef50_Q31GK8 Exonuclease n=8 Tax=Bacteria RepID=Q31GK8_THICR Length = 207 Score = 93.4 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 16/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYE 62 +++ D ETTGL+ V + + + E L ++T Q AA ++++I+ + Sbjct: 30 EVVCFDCETTGLNPRKDRIVSLSAIKIRGNEVLTSEALNLTFVQEAAISEESIKIH-WIR 88 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA---RQRVTYSMPFSPLTV 119 + L+EQ+ A ++ G FD +V + + ++P + + V Sbjct: 89 NEDTKAGLSEQEGIEA---FLHFIGSRPLVGYYLEFDVAMVNQIIKPWLGITLPNAQIEV 145 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ ++ L DA+ + L +P + +H A DA T+ + L Sbjct: 146 SSRYYDYKEEIIPKKIIDL--------TFDAILKDLELPNLGQHDAFSDAFMTSLIYIKL 197 Query: 180 RHT 182 + Sbjct: 198 KSL 200 >UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A6Z2_ALHEH Length = 714 Score = 93.4 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 63/179 (35%), Gaps = 17/179 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 +V D E TGL+ + + + + V G L + P ++ +G + Sbjct: 509 FVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINPGRPIPPGSVRFHGITD 568 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + V + + ++ N AFD ++ + + F + + Sbjct: 569 DDVQDK----PPIEVVLPQFKSFVGDAVLVAHNAAFDMKFISMKEREAGVRFDNPVLDTL 624 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L D E LDA+ +R G+ + RH+A+GD ATA + Sbjct: 625 LLSALLD-----------GDEEDHSLDALCDRYGIAITGRHTALGDTLATAELLVRIIE 672 >UniRef50_B4WXR6 Exonuclease superfamily n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXR6_9GAMM Length = 215 Score = 93.0 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 16/181 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGYYE 62 Q++ +D ETTGLD TA V + + + G L + + + + I+ Sbjct: 44 QVVAIDCETTGLDSRTAELVSIAAVVIKDGRVLSSQGLDVKLMPPDSLKEDTIRIHRLRP 103 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPLTV 119 + + A + + G AFD ++ R + + +P + + Sbjct: 104 ----VDLEGGESVRDALDALLALVGNRPLVGWCVAFDVAMINRYLRPLMGFDLPNDIIEL 159 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ ++ D T DA+A L VPV+ RH+A GDA +A + L Sbjct: 160 SALYQKKMRYWQP--------DVTPDLRFDAMASALQVPVMERHTARGDAVTSALMYLQL 211 Query: 180 R 180 + Sbjct: 212 Q 212 >UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK59_9BACT Length = 228 Score = 92.2 bits (227), Expect = 8e-18, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 70/176 (39%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGYYER 63 V+D ETTGLD + A + V + V + + F I E ++++ + + Sbjct: 45 FSVIDTETTGLDLNDARIINVAAVKVQNFKIIDFYNSFINPE--TEIPKESIQWHNITDE 102 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + +++ + G + FD ++ ++ + ++ Sbjct: 103 MVADK----PTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMMDSF-------SCQIN 151 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ L + Y+ I E LD + + V RH+A+GDA ATA F + Sbjct: 152 NNWLDTMLIYSHA--IIKKDERYSLDYLLDLYNVTCNGRHTALGDALATAEVFTKM 205 >UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A5KMD9_9FIRM Length = 279 Score = 91.8 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 68/184 (36%), Gaps = 20/184 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGE-SLYFVPHITVEQLAAADPKAMEING 59 M K I DLETTGLD +E+G L V G+ S F+ I ++L + I G Sbjct: 35 MLKSYIAFDLETTGLDPMNNEIIEIGALKVRDGKVSERFMEFIKPQELISP-----AITG 89 Query: 60 YYERGLYREALTEQQTA-VAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G+ + + + A + D+ + G N FD + +PF + Sbjct: 90 LT--GISNDMVASARPARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKMG 147 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + K E + L A+ E + H A DA ATA + Sbjct: 148 IDTLK-----------IAKKVHPELESKSLSALCEHYKIENKAAHRAYFDALATAKLYQT 196 Query: 179 LRHT 182 L H Sbjct: 197 LSHY 200 >UniRef50_A5FFY1 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FFY1_FLAJ1 Length = 198 Score = 91.8 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 13/177 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+ ET+GL+ + + + +G +V +S+ + L K +E NG Sbjct: 29 KFVVLSTETSGLNPNKDVILSLGAFSV-IDDSIIIKENFEAVLLQY---KFLEDNGLSNE 84 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +T+ A A ++L G + FD ++ L GR+ Sbjct: 85 FIIESKMTKMPEAEALEAFINFLGNAVLVGHHINFDIEMLNAAL-------ERLDCGRLK 137 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L Y KL + L+ + E +P +R+S+ DA F L+ Sbjct: 138 NEALDIDVMYR--KLTDINDKQFSLNDLCEIYKIPKSDRNSSAEDAYKIGLLFLKLK 192 >UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia RepID=DPO3_CLOTE Length = 1427 Score = 91.8 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 20/176 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAM-EINGYYE 62 +V D+ETTG +E+G + + G+ + + + E++ P+ + E+ G ++ Sbjct: 413 YVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERII---PEKIIELTGIHD 469 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + D++ + N FD + + + + + F+ Sbjct: 470 ----YMVKDAPKIEEVLPKFIDFIEDSILVAHNANFDVSFIKKNCKDFGIHFN------- 518 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L + K + L+ VA+ LG+P++N H A+ DA T Sbjct: 519 -NPILDTIPLC---KFLYPELKRYKLNVVAKHLGIPLLNHHRAVEDAKTTGDILLK 570 >UniRef50_O29290 DNA polymerase III, subunit epsilon (DnaQ) n=1 Tax=Archaeoglobus fulgidus RepID=O29290_ARCFU Length = 205 Score = 91.5 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 64/175 (36%), Gaps = 14/175 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 Q + +DLETTGL+ + +G + + L + + + ++M+ +G Sbjct: 9 QFLSIDLETTGLNQKKDEIIAIGAVPIIGTRILAGESYYRLLRPEKFKHESMKFHGLDP- 67 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 T + EV D LRG G D + R +V Sbjct: 68 ---ARLKTAHDFSEIAEEVADLLRGKVLVGYAIELDYGFLKRALKREGY--------KVE 116 Query: 124 HHRLA--DLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + R+ D L P LD +A++ V V RH+A+ DA TA F Sbjct: 117 NKRIDVIDFEKAVCYILGERPVGEMTLDNLAKKYRVEVSYRHNALADAFITAQIF 171 >UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CLT9_9FLAO Length = 375 Score = 91.5 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 66/181 (36%), Gaps = 26/181 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V+D+ETTG +D E+ + D H V+ + I Y ++ Sbjct: 2 TYAVLDIETTGGKFDEEGITEIAIHRFD--------GHEVVDTFISLINPERPIQPYVQK 53 Query: 64 --GLYREAL-TEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR--VTYSMPFSPLT 118 G+ + + T + + + R + N FD I+ + + Y+ L Sbjct: 54 LTGIDPKMVQTAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYNFERKTLC 113 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + D +++ GKL LG+PV NRH A GDA AT Sbjct: 114 TVDLSQRLIPDAESHSLGKL-------------VRSLGIPVSNRHRANGDALATLKLLQH 160 Query: 179 L 179 L Sbjct: 161 L 161 >UniRef50_Q3B459 DNA polymerase III, epsilon subunit n=8 Tax=Chlorobiaceae RepID=Q3B459_PELLD Length = 236 Score = 91.1 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 70/185 (37%), Gaps = 19/185 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAAD----PKAMEI 57 + +++V D ETTG D T + +G + + G S+ V L D +A+ + Sbjct: 46 SVRMVVFDTETTGFDLKTDGVISIGAVAI-NGLSINVADSFEV--LVRQDRVGRSEAVAV 102 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR---VTYSMPF 114 +G ++ + A A +++ + + +FD ++ R + Sbjct: 103 HGLLKKDIAGGA----GEVEAAEAFLEYIGSSILVAQHASFDVAMLNRILSETFRIRLFN 158 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + RL Y LD + +R G+ + +RH+A GDA TA Sbjct: 159 GVVDTASLA-KRLEKGPYYNLA----HKAGEYRLDHLCQRYGIRLYDRHTAAGDAFLTAQ 213 Query: 175 CFDML 179 L Sbjct: 214 LLQRL 218 >UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJN1_9PROT Length = 735 Score = 90.7 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 17/175 (9%) Query: 7 VVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAA-DPKAMEINGYYERG 64 V D ETTG++ +++G + + G L + P+ + I+G + Sbjct: 547 VFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRIHGISD-- 604 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + V + D+ N AFD + + + FS Sbjct: 605 --DMVRGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFSQ-------- 654 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L L + E LD++AERLG+ + +RH+A+GDA ATA F + Sbjct: 655 PVLDTLLLSG---VLHPNQESHQLDSIAERLGIGIEDRHNALGDACATAEVFLKM 706 >UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4KA24_THASP Length = 769 Score = 90.3 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 65/175 (37%), Gaps = 17/175 (9%) Query: 7 VVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYYERG 64 V D ETTGL+ ++VG + G+ L + P++ +I+G Sbjct: 581 VFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPERPLAPESAKIHGITSEM 640 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + N AFD + + + F H Sbjct: 641 L----RGQPTIDKVLPAFHAFAADTVLIAHNAAFDMRFLQLKEEQTGLRF--------DH 688 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L A + E L+A+AERLG+ +V RH+A+GDA TA F L Sbjct: 689 PVIDTLLLSA---VVHPNQESHRLEAIAERLGLTIVGRHTALGDAIVTAEVFLKL 740 >UniRef50_A5IJS5 DNA polymerase III, epsilon subunit n=6 Tax=Thermotogaceae RepID=A5IJS5_THEP1 Length = 186 Score = 90.3 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 20/185 (10%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 VVD ETTG D VE+ + V G+ ++ P ++ ++G Sbjct: 8 FCVVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIRIPALVQKVHGIS- 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + +D+++G N FD T + M + Sbjct: 67 ---NMDIEEAPDMDAVYNLFRDYVKGTVLVFHNANFDLTFLD-------MMAKETGNFPI 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELE-GLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + L L+ + L + ERLG+ RH A+ DA TA F L Sbjct: 117 TNPYIDTL------DLSEEIFGRPHSLKWLCERLGIKTTIRHRALPDALVTARVFVKLVE 170 Query: 182 TAAAH 186 + Sbjct: 171 FLGEN 175 >UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MZX4_9GAMM Length = 738 Score = 90.3 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 26/186 (13%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++VD+ETTG + EVG++ V GE V++ + I Sbjct: 571 QPYVIVDVETTGGRKEQHRVTEVGMVKVLNGE--------IVDEWQSLINPMRHIPQSIT 622 Query: 63 R--GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS--MPFSPL 117 R G+ E ++ E+ ++ G+ F N FD + L Sbjct: 623 RLTGISNEMVSNAPVFDDVADEIAEFCAGSVFVAHNVNFDYGFFRSEFERLGRRFHAPKL 682 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ L ++Y+ GKL L + + N H A+ DA A A F Sbjct: 683 CTVQMSRKYLPGHSSYSLGKL-------------CAALDIDLENHHRALDDAKAAAHVFR 729 Query: 178 MLRHTA 183 +++ Sbjct: 730 LIQEKR 735 >UniRef50_C8SCL6 DNA polymerase III, epsilon subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8SCL6_FERPL Length = 200 Score = 89.9 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 72/176 (40%), Gaps = 11/176 (6%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ VVD+ETTGL+ + + ++ +D + L+ + + + +++ +G Sbjct: 4 EKFAVVDVETTGLNVKKDEIISIAIIPMDGLKILFSEAYYRILKPRRFKIDSVKYHGITP 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R + E+ + L G + D + + + V Sbjct: 64 RMVEEA----PTFCEVKEEILEKLNERIIVGYSINLDIEFLKKSFKECEV------VFEC 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + +AD+ G+L D + L+ +A++ GV V RHSA+ DA TA F M Sbjct: 114 KYVDIADVEKLV-GRLFGDYMKDVTLEDLAKKYGVDVAYRHSALSDAYITAQIFQM 168 >UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flavobacteriales RepID=A4BWD8_9FLAO Length = 462 Score = 89.9 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 58/180 (32%), Gaps = 22/180 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 VVD+ETTG E+ L D + + F + EQ A ++ G Sbjct: 3 YAVVDIETTGNGPKGQKITEISALIFDGKKIVDEFTSLVNPEQNIPAFITSL--TGIT-- 58 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP--LTVGR 121 + +V + F N FD I+ + + F L R Sbjct: 59 --NAMVRNAPRFFEIAKKVAEITENTIFVAHNVNFDYNIIQAEFKSLGFDFKRKKLCTIR 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + L +Y+ G + +P+ RH A GDA ATA L Sbjct: 117 LTRKIIPGLPSYSLGNICTGE-------------NIPINGRHRAKGDAEATAELLRRLIE 163 >UniRef50_C0QPN1 DNA polymerase III subunit epsilon n=1 Tax=Persephonella marina EX-H1 RepID=C0QPN1_PERMH Length = 206 Score = 89.9 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 18/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGE---SLYFVPHITVEQLAAADPKAMEINGY 60 DLETTGLD + + +G + + + S F + E++ + + + I+ Sbjct: 34 TFCSFDLETTGLDVEKDEIISIGAVKIKEMKIDLSTSFYRIVKPERIP--EKENILIHSI 91 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMP--FSPL 117 E + + ++++G G +FD +++++ Y P + Sbjct: 92 T----ASEMKKGEDIRDVLPKFLEYIKGTVLIGYFVSFDISMLSKYTQKFYGFPILNPYI 147 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 V +++ + +Y + + + LD +AE L +PV RH+A+ D+ TA F Sbjct: 148 DVSQLYIKKKVK--SYTPY----EKIKEKSLDQIAEELNIPVRKRHNALYDSITTALIFL 201 Query: 178 ML 179 L Sbjct: 202 SL 203 >UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruegeria RepID=Q1GL30_SILST Length = 479 Score = 89.1 bits (219), Expect = 7e-17, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 63/178 (35%), Gaps = 18/178 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYYER 63 +V D ETTGL VE+ V G L T P A +I+G + Sbjct: 273 FVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTKIHGVRD- 331 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + D+ + N FD ++ +Q + G W Sbjct: 332 ---ADVAQSPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQQ---------EVQTGCSW 379 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCFDML 179 H + D +A I LDA+ RL + + +RH+A GDA ATA L Sbjct: 380 DHPVVDTVLLSALVFGISAD--HSLDALCSRLSIEIPARHRHTAKGDARATAEALIRL 435 >UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha subunit (Fragment) n=1 Tax=Oribacterium sinus F0268 RepID=C2KW36_9FIRM Length = 821 Score = 89.1 bits (219), Expect = 7e-17, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 34/187 (18%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY---------FVPHITVEQLAAAD 51 ++ +V DLETTG D +E+G + ++ G+ + + QL + D Sbjct: 514 LSSTTVVFDLETTGFDPRVNHIIEIGAVKIENGKIIDRMDVFVNPGVPIPFRITQLTSID 573 Query: 52 PKAMEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS 111 + + + + D+ + N FD V+ + + Sbjct: 574 DSMV--------------MDAKGIEEVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALN 619 Query: 112 MPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 +PFS + V A +L + LD VA+ L + +++ H A+ DA A Sbjct: 620 IPFSAPVIDTV-----------ALSRLLLPRLNRFKLDTVAKELKIELLHHHRAVDDAEA 668 Query: 172 TAFCFDM 178 TA + Sbjct: 669 TARIYLK 675 >UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCD0_PARDP Length = 706 Score = 88.4 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 17/175 (9%) Query: 7 VVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYYERG 64 V D ETTGL+ +++G L + G+ L + P+++ +G + Sbjct: 518 VFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHPEM 577 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + A + G N AFD + + + F Sbjct: 578 VQ----GQPRIAEVLPAFHAYASDTVLVGHNVAFDMRFLQLKEAATGLRF--------DQ 625 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L L + + L+A+A RLGV + RH+A+ DA TA F L Sbjct: 626 PVLDTLLLAS---IAQPHEPSHSLEAIAARLGVEITQRHNALSDALVTAEVFLRL 677 >UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=17 Tax=Fusobacterium RepID=A5TTA5_FUSNP Length = 1454 Score = 88.4 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 23/181 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 ++ +V D+ETTGL+ T +E+G + + G + + I + EI Sbjct: 425 EEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYH--ITEITSIT 482 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLT 118 + + E + G+ D++ N FD + R Y + S + Sbjct: 483 DEQVAN----EPKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKYLNIDLQSSVID 538 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 ++ DL Y G LN + LG+ + H A+ D+ ATA F + Sbjct: 539 TLQMARDLFPDLKKYGLGDLN-------------KTLGLALEKHHRAVDDSQATANMFII 585 Query: 179 L 179 Sbjct: 586 F 586 >UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FIG6_FLAJ1 Length = 459 Score = 88.4 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 65/182 (35%), Gaps = 24/182 (13%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 ++ +VD+ETTG + + E+ ++ D L + + EQ P ++ + Sbjct: 3 NQEYAIVDIETTGGNASGSRITEIAIIIHDGKNVLDRYETLVNPEQDI---PPSI----F 55 Query: 61 YERGLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS--MPFSPL 117 G+ E + +V + L F N FD + V Q L Sbjct: 56 GLTGINNEMVANAPIFDDISEKVLEMLTDRIFVAHNVNFDYSFVHHQLEQAGFKWSAKKL 115 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 R L +Y+ G L L + + NRH A GDA ATA F Sbjct: 116 CTVRAARKIKPGLGSYSLGNL-------------CNSLNISLENRHRAGGDADATAILFS 162 Query: 178 ML 179 +L Sbjct: 163 LL 164 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 88.0 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 14/176 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +DLETTGLD++ +EV L+ + GE + + P + G + Sbjct: 5 PAFVALDLETTGLDFEKDEIIEVALVRFENGEPKENLDFLVKPSAVELRPFIETLTGISK 64 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A G++ ++ N FDS + + + + Sbjct: 65 ----ADLESASDFATIAGQICSFVGDLPIVAHNAVFDSKFLKQTFTKVGISYDS------ 114 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 H D + ++ LD + + L + H A+ DA A F Sbjct: 115 --HVFWD--SLTLSRIAFQDVPNHRLDTLVQELNIERSRAHRALPDADACGRLFVK 166 >UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha H16 RepID=Q0JYK3_RALEH Length = 220 Score = 88.0 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 14/176 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + ++ +V D+ETTGLD + +E+G + V+ + + + V+ K E+ G Sbjct: 48 LPERFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVLVKPSRKVPKKITELTGI 107 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + E ++ + A + + N FD +++ S+ F+ Sbjct: 108 TPEMIEAEGVSLES---AVQDFAKFAGNLRLVSFNAEFDMAFISKAAGKSSITFAN---- 160 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 A + + L +A+ + + H A+GD A + Sbjct: 161 -------PVSCALKMSRRAWPDRKSYRLAEIAKDGNLDTSDMHRALGDCQRAAIVY 209 >UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CX37_DEIDV Length = 202 Score = 87.6 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 21/190 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI--NGYYE 62 ++V DLETTGL + VE+G L V G+ + + T+ + A + + I + Sbjct: 3 VVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQRV 62 Query: 63 RGLYREA-LTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM---PFSPLT 118 G+ E + E +++ + N FD + Q M P Sbjct: 63 HGISNEMVRSAPTIEEVLPEFLEFVGDSAVVAHNVGFDCGFMRAQARRLGMVWAPAGEHC 122 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCF 176 ++ + L +AERLG+ RH + GD TA + Sbjct: 123 TVQLS-------------RRAFPKERAHNLTVLAERLGLNFAPGGRHRSFGDVQVTAHAY 169 Query: 177 DMLRHTAAAH 186 L A Sbjct: 170 VRLLELLATA 179 >UniRef50_B0UN90 Exonuclease RNase T and DNA polymerase III n=3 Tax=Rhizobiales RepID=B0UN90_METS4 Length = 223 Score = 87.6 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 17/186 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFV-PHITVEQLAAADPKAMEINGYYE 62 + + +D ETTGLD V V + + L TV + P+A++++ Sbjct: 30 EAVALDCETTGLDPRRDEIVAVAAIRIRGDRILTSESLRATVRSDRPSSPEAIKVHRLLN 89 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA---RQRVTYSMPFSPLTV 119 + REA A + ++ G G FD ++ R++ +P + V Sbjct: 90 AEI-REAEPLDAVLPA---LLRFIGGRPIVGYYTEFDVRMLDKSVRRQFGIRLPNPRIDV 145 Query: 120 GRVWH-HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 ++H + D Y L + E LG+P + +H A DA TA + Sbjct: 146 SSLYHAAKYRDAPDYVKIDL--------SFARILEDLGLPALPQHDAFNDALMTAMIYLQ 197 Query: 179 LRHTAA 184 LR A Sbjct: 198 LRDLLA 203 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 87.6 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 64/179 (35%), Gaps = 17/179 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V D ETTGL+ +++G + V G+ L + P+ Sbjct: 543 TYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESA----RV 598 Query: 63 RGLYREALTEQQTAVA-WGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 G+ + L Q A + N AFD + + + F Sbjct: 599 HGITADMLAGQPVIEAVLPSFHAFAADTVLVAHNAAFDMRFLQLKEDLTGLRF------- 651 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L L A + + L+A+AERLG+ VV RH+A+GDA TA F L Sbjct: 652 -DQPVLDTLLLSA---VIHPNQDSHRLEAIAERLGITVVGRHTALGDAMVTAEVFLKLV 706 >UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIM3_PETMO Length = 1388 Score = 87.6 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 60/183 (32%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 + +V DLETTGL+ +E+G + + + + F + + + G Sbjct: 381 EFVVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSKFHRLVKPRKPVS--NFTSNFTGITN 438 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L E E+ + ++ G N FD + Sbjct: 439 QMLEVEKPIEE----VLPQFLSFIEGAVLVAHNAIFDYRFIREWVRRVY--------NEH 486 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A + L + + GL V E L + H A DA TA F L Sbjct: 487 FEQTYIDTVALSKSLLTL---KSYGLAKVVEELKLGSFEHHRAHEDANITALVFLKLIEM 543 Query: 183 AAA 185 A + Sbjct: 544 AKS 546 >UniRef50_Q0VMJ4 Nuclease, putative n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VMJ4_ALCBS Length = 173 Score = 87.2 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGYYER 63 ++ +D ETTGLD TA V + + + G L ++ + + ++ I+ Sbjct: 1 MVAIDCETTGLDSRTAELVSIAAVVIKEGRVLSSQSLNVKLAAPDSLREDSICIHRLRPV 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR---VTYSMPFSPLTVG 120 L A A + + G AFD ++ R + + +P L + Sbjct: 61 DLEGGA----SIREALEALLALIDNRPLVGWCVAFDVAMINRYLRPLMGFDLPNDTLELS 116 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ ++ D T DA+A L VPV+ RH+A GDA +A + L+ Sbjct: 117 ALYQRKMRYWQP--------DITPDLRFDAMASALQVPVIERHTARGDAVTSALMYLQLQ 168 >UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia RepID=DPO3_CLOPE Length = 1449 Score = 87.2 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 18/175 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 + +V D+ETTG +E+G + + GE + F + + K E+ + Sbjct: 434 EYVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPK--VNIPYKITELTSITQ 491 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + +++ + N AFD + + + + +G+ Sbjct: 492 NMVN----GQPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKK---------NLMDMGKT 538 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + D A + + L+ VA+ LG+ + N H A+ DA ATA Sbjct: 539 LKNPVMDTVPLA--RYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILK 591 >UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus RepID=C7RGM9_ANAPD Length = 1365 Score = 87.2 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V DLETTGL E+G V+ G+ + ++ + K +EI G Sbjct: 349 FVVFDLETTGLSRYKDRITEIGACRVEGGKITEIYNELVNPEMVIPE-KIIEITGIT-NE 406 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + ++ T ++ D+ + + G N FD V + F+P+ + Sbjct: 407 MVKDCPTIEEVLPG---FLDFCKDSILVGQNTDFDVGFVRENCHRMGLDFNPIYL----- 458 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D A + + LD +A +L +P N H A DA ATA F + Sbjct: 459 ----DTLPMARALFS--DMKKFSLDKIARKLEIPAFNHHRASDDARATAQIFIKMFKM 510 >UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flexibacteraceae RepID=D2QE10_9SPHI Length = 180 Score = 87.2 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 64/185 (34%), Gaps = 20/185 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VD+ETTG E+ + G+ + H + P + G + Sbjct: 2 YCIVDVETTGGVKGPTRLTEIAIFR-HDGQQVVDSFHSLLNPGCPIPPFIRHLTGISDEM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR--VTYSMPFSPLTVGRV 122 + A +V + + F N FD + + ++ + + L R Sbjct: 61 VQDA----PTFADVANDVLNITQDAIFVAHNVGFDFSFIQKELNWLGHDFLRRTLCTVRT 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L +Y+ GKL L +P+ RH A GDAAAT F+ML Sbjct: 117 SRKLLPGYPSYSLGKL-------------CRSLEIPLNGRHRAQGDAAATVLLFEMLLKN 163 Query: 183 AAAHL 187 A L Sbjct: 164 DAQGL 168 >UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphingobacteriales RepID=C7PV18_CHIPD Length = 456 Score = 86.8 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 61/180 (33%), Gaps = 26/180 (14%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER- 63 +VD+ETTG E+ + + V+Q + I Y + Sbjct: 2 YAIVDIETTGGHASANGITEIAIY--------IYDGRNIVQQYETLINPGVPIPRYIQSL 53 Query: 64 -GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV--TYSMPFSPLTV 119 G+ E + G++ L F N FD + + Y + L Sbjct: 54 TGITDEMVANAPAFDEVAGDIFALLHDKIFVAHNVNFDYSFIQYHLAQAGYQLRTKKLCT 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ + L +Y+ G L + L + V RH A GDAAAT F +L Sbjct: 114 VRLGRKIIPGLPSYSLGNL-------------CKSLEISVTQRHRAAGDAAATVKLFGLL 160 >UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI21_CORK4 Length = 616 Score = 86.8 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 65/188 (34%), Gaps = 23/188 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 +VVDLETTGL +E+G + + GE + F + +L P I G + Sbjct: 33 TFVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISRFSTFVDPGRLIP--PLITNITGISD 90 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA----RQRVTYSMPFSPLT 118 + + A A + ++ RG N FD + R +T+ P T Sbjct: 91 DDVNGA----PKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHITWPQPTHLCT 146 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + A L+ L ++A H A+ DA AT F Sbjct: 147 LV------------LARTMLDRCAVGSFKLSSLARHFHATTTPTHRALDDALATVTVFHG 194 Query: 179 LRHTAAAH 186 L +H Sbjct: 195 LLEELGSH 202 >UniRef50_C7G8J4 Putative DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8J4_9FIRM Length = 235 Score = 86.8 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 16/179 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+DLE TGL+ T +EVG + V +++ I + Q K E+ G E Sbjct: 2 QDYVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDKFGAI-LCQNVKIPEKVTELTGITE 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E+ A + +++ + G N FD + + V ++MP V + Sbjct: 61 AMVQGGMEKEE----AMRQFFEFIGEDIIVGQNVIFDYGFLKQWAVNHNMPLERSAVDTL 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + L+++ GV N H A DA T ++ LR Sbjct: 117 K-----------LARKFLPKEQKKDLESLCAYFGVKRENAHRAFDDAYETWQIYEALRE 164 >UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae RepID=C7NEP7_LEPBD Length = 1459 Score = 86.4 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 18/179 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 +V D+ETTG D +E+G + + E + F + E K E+ + Sbjct: 425 YVVFDIETTGFDPFNDKIIEIGAVKMRGREVIGEFSEFVNPEIPIPQ--KITELTTITDE 482 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ ++ G T N FD + + + G + Sbjct: 483 MVANA----EKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQ---------KTIDQGLEY 529 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A + + GL + + G+ + H A+ DA ATA F + Sbjct: 530 SPSVIDTLPLA--RTLLPELRGYGLANLVKYFGITLETHHRAVDDAKATAEVFQKFLNM 586 >UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive type) n=3 Tax=Lactobacillus delbrueckii RepID=Q049V0_LACDB Length = 1411 Score = 86.4 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 18/182 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 ++ ++ D+ETTGL +E+G + + GE + F I + + + Sbjct: 390 QEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLS--ETTINLTSIT 447 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + AV + D+ + G N FD V P Sbjct: 448 DEMVQAA----DDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYP-------E 496 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA-FCFDMLR 180 + + L +L LD++ + V + + H A DA AT F +L Sbjct: 497 ISQPVVDTLEV---SRLLHPEQSRHTLDSLCRKYNVALEHHHRANQDAEATGYLMFKLLD 553 Query: 181 HT 182 Sbjct: 554 AF 555 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 86.1 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 17/182 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 + + +D+ETTGL +E+G + + G + F + + + + G Sbjct: 84 RSFVALDVETTGLRPARHRIIEIGAVRYEDGCCVERFSVLVNPHR--RLPVYIVRLTGIR 141 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L LT + +L +T G N FD + + + G Sbjct: 142 DEDL----LTAPSFVDVAAAFRVFLGESTVIGYNVGFDLDFLNAEL-------RRIGQGP 190 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + L L + + LDA+ +G+ RH A+ DA ATA + L Sbjct: 191 LPNPALDVLPL---ARALLTANGRYDLDAICRSIGLARGTRHRALPDAEATAVLYLHLVE 247 Query: 182 TA 183 A Sbjct: 248 RA 249 >UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Treponema RepID=Q73L66_TREDE Length = 217 Score = 86.1 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 15/174 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 D ETTG + VE+G + D + ++ ++ P+A ++N + Sbjct: 16 FTAFDTETTGTEAKAERVVEIGCVKFDI-RGVIARYNVLIDPEKPMPPEAGKVNQITDEM 74 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + A + D++R N +FD + + ++ + Sbjct: 75 LA----GQPKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCGK-------TKLTN 123 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + + + L +A + GV VN H A DA F + Sbjct: 124 KVFDTL---TFARETLPGLQSYALQNLATQFGVQAVNAHRAEDDARVCMEFFKI 174 >UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=Clostridiales RepID=C7GFY3_9FIRM Length = 697 Score = 86.1 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 18/180 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGE-SLYFVPHITVEQLAAADPKAMEINGYYE 62 +V DLETTG D +E+G + V GE + F + E P +E Sbjct: 474 TYVVFDLETTGFSPDKNKIIEIGAVKVVHGEITERFSTFVNPEVPI---PYRIEELTSIR 530 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +A + + ++ N FD + + + + Sbjct: 531 DDMVIDA---PKIETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGI---------- 577 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + A ++ + LD VA+ LGV + N H A+ DA TA F Sbjct: 578 -EKEFTIIDTVALARILLPQLNRFKLDTVAKALGVSLENHHRAVDDAGCTAEIFVKFVKM 636 >UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HRT4_9SPHI Length = 456 Score = 86.1 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 26/181 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE- 62 + +VD+ETTG T E+ +L + GE + +E+ + +I Y Sbjct: 2 EFAIVDIETTGGAASTCGITEIAIL-IHDGEKV-------IEEFESLINPEQDIPTYITG 53 Query: 63 -RGLYREALTEQQTAVAWGE-VQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS--PLT 118 G+ +++ T + + D L G F + FD V F L Sbjct: 54 LTGIDNSMVSDAPTFEELSDKLWDLLHGRVFVAHSVNFDYGFVRACFNAIGREFKVDKLC 113 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R+ + L++Y+ G+ + E +P++ RH A+GDA ATA FD Sbjct: 114 TVRLARKIIPGLSSYSLGR-------------ICETQKIPILARHRAMGDARATAILFDQ 160 Query: 179 L 179 + Sbjct: 161 M 161 >UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus RepID=Q1IXC1_DEIGD Length = 180 Score = 85.7 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 21/185 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI--NGYYE 62 ++V DLETTGL + VE+G L V G + T+ + A + + I Sbjct: 3 VVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQRV 62 Query: 63 RGLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV---ARQRVTYSMPFSPLT 118 G+ + + + E D++ + A N FDS+ + AR+ P + Sbjct: 63 HGISDAMVQDAPELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGLVWAPPAEYC 122 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCF 176 ++ + LD +A+RLG+ RH ++GD TA F Sbjct: 123 TVQLS-------------RRAFPRERTHNLDVLAQRLGLSFAPGGRHRSLGDVQVTAEAF 169 Query: 177 DMLRH 181 L Sbjct: 170 VRLME 174 >UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase III n=3 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F5B Length = 203 Score = 85.7 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 22/186 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEING 59 M + V DLETTGLD E+ + D IT P+ + + G Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDIRITKNSGTKLTPEIVNLTG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 E + R + E VA + ++ G + FD +AR + P S + Sbjct: 61 ISE-SMMRGGVPEP---VAIMLLSCFMSGTIVVAHHAPFDLAFLARYQFE---PDSFVCT 113 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + ++ E L +VAER G+ + H A+ D AT F + Sbjct: 114 RALSK--------------LVESDESASLASVAERRGIELTGHHRAMNDVEATVKVFQQM 159 Query: 180 RHTAAA 185 + A A Sbjct: 160 KAEADA 165 >UniRef50_A1VJH5 Exonuclease, RNase T and DNA polymerase III n=8 Tax=Proteobacteria RepID=A1VJH5_POLNA Length = 220 Score = 85.7 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 74/189 (39%), Gaps = 16/189 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGE---SLYFVPHITVEQLAAADPKAMEINGY 60 + + +D ETTGL+ T + +G + + S + E+ +++ ++ Sbjct: 41 EWVALDCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEK-RRLSAESVRVHRL 99 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPL 117 E+ + + A ++ ++ G FD ++ R +P + Sbjct: 100 REQDVAQGI----SADEAMMKLMYFIGSRPLVGYYLEFDLAMINRVLFPMLGMGLPQPKI 155 Query: 118 TVGRVWH-HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 V +++ ++ L +A +ID +++ + L +P+ + H A+ DA A F Sbjct: 156 EVSSMYYDYKFHQLPHHARDSGSIDLR----FESLMKDLNLPLWSAHDALNDAIMAALAF 211 Query: 177 DMLRHTAAA 185 LR A Sbjct: 212 LKLRQLRAG 220 >UniRef50_C0GM30 DNA polymerase III, epsilon subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GM30_9DELT Length = 249 Score = 85.7 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 19/185 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLL-----NVDTGESLYFVPHITVEQLAAADPKAMEING 59 +V+D E TGL+ V +G L +D +S YF T + ++ I+G Sbjct: 52 FVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACPTRDVPKQ----SIVIHG 107 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR---VTYSMPFSP 116 + A + D+ + G N D +++ R+ + Sbjct: 108 ITPSEAQKA----PPLKEALQGLLDFCGNSIIVGHNINLDISVINRELKKEFGGELHNPC 163 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + R+ G L ++ G+P+ H+A DA TA+ F Sbjct: 164 IDTMRLARQYREGQWT---GAYECYEEYSYNLRKLSREFGLPLFTEHNAFTDALQTAYLF 220 Query: 177 DMLRH 181 L H Sbjct: 221 IYLVH 225 >UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacter sp. M18 RepID=C6MPJ2_9DELT Length = 835 Score = 85.7 bits (210), Expect = 8e-16, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 16/178 (8%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYY 61 + +V D ETTGL V + + + G+ T+ P ++ + Sbjct: 640 EYVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAESTAFHRIE 699 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + + N AFD + +P Sbjct: 700 DHMVADA----PSMNEVYPQFVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLPL------- 748 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 V + L L TE LDA+A+R+G+ + RH+++GDA ATA F L Sbjct: 749 VENPILDTLFLSVG---LHSGTEGHSLDAMAQRMGIAIEGRHTSLGDARATAQIFLGL 803 >UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EC49_MACCJ Length = 850 Score = 85.7 bits (210), Expect = 8e-16, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 15/177 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M ++ VVD+ETTG + D+ ++VG+ V + + T + A + + Sbjct: 1 MNRKYAVVDIETTGNNLDSDEIIQVGIAIVQNKKIIE-----TYDTFIACNNEIPAFIQS 55 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + L G F N FD + + F P Sbjct: 56 LTKIDAFDLVDAPNFSHVASHIIKLLDGCVFVAHNVQFDLRFLQKYFSEAGHKFQP---- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + + K+ E L ++A+ LG+ + + H AI DA ATA F Sbjct: 112 ---RYIIDTV---DWFKIVYPSLERYQLKSIADDLGIELSSAHRAIDDAVATAEVFI 162 >UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB Length = 484 Score = 85.3 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 63/184 (34%), Gaps = 18/184 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYYER 63 V D ETTGL V++G + V G + T+ P+A ++G Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVST- 335 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 A A E + N FD + R + W Sbjct: 336 ---AMVQGAPDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLA---------W 383 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRH 181 H + D +A + + LDA+ ERL + + RH+A+GDA ATA + Sbjct: 384 DHPILDTVLLSA--VLFGASVPHTLDALCERLDITIPPALRHTALGDAQATACALVQMIP 441 Query: 182 TAAA 185 A Sbjct: 442 MLQA 445 >UniRef50_A6W8W5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8W5_KINRD Length = 218 Score = 85.3 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 70/202 (34%), Gaps = 35/202 (17%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + L+ D ETTGL E+ L+ + + + + A+P A++I YY Sbjct: 4 RPLVFFDTETTGLGPGR-QAWEIALVRREPDGTERPLEFFLPIEEVRAEPGALDIGRYYA 62 Query: 63 RGLYREALTEQQTAVAWGE---------------------------VQDWLRGNTFAGSN 95 R + A++ + + W G T G+N Sbjct: 63 RHPHGIAISTIPAQPPFTTPKPADAPRPVPQEPGPVVLAVPKAARLLAQWTSGATIVGAN 122 Query: 96 PAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL 155 PAFD I+ R T WH+R D+ A A G + + A A + Sbjct: 123 PAFDVQILERLVRTDGH-------APRWHYRTRDVEAMAVGFIGDEDLGGLAACAAALDV 175 Query: 156 GVPVVNRHSAIGDAAATAFCFD 177 + H+A+GD +D Sbjct: 176 TIDPDLEHTAMGDVRTVMAIYD 197 >UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Flavobacteriaceae RepID=A0M4R6_GRAFK Length = 507 Score = 85.3 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 26/180 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + D+ETTG E+ ++ V G+ + ++ ++ + I Y E Sbjct: 5 KFAITDIETTGNGIKGNRITEICVIVVQNGKVI--------DEYSSLVNPSQAIPLYIET 56 Query: 64 --GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS--MPFSPLT 118 G+ E + Q + E+ + F N FD I+ + + L Sbjct: 57 LTGINDEMVFNAPQFSEIADEITKITKDCIFVAHNVNFDYNIIRAEFASLDRDFKRKRLC 116 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R+ + L +Y+ G + + +P ++RH A GD AT F Sbjct: 117 TVRLTKKLIPGLFSYSLG-------------NICTSINIPHIDRHRAKGDCDATVTLFQR 163 >UniRef50_A3HVK4 DNA polymerase III, epsilon subunit n=1 Tax=Algoriphagus sp. PR1 RepID=A3HVK4_9SPHI Length = 223 Score = 85.3 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 9/167 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D ETTGL+ + G + ++ + + D K + ++G Sbjct: 39 FVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWYLKSSKKDFKTIPVHGLIGNE 98 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF-SPLTVGRVW 123 EA+ +Q A V ++ N G + FD ++ + + + + + Sbjct: 99 ---EAVPLEQFA---KRVLEYFENNILVGHHLGFDLEMLEKALKPFGLDKIQNKCIDTMS 152 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 D A N + LD++ +R + +RH+A GDA Sbjct: 153 LAIRLDHGLMA--DRNYIDFKDYSLDSLCQRYDIKTDDRHTAGGDAF 197 >UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia RepID=DPO3_THETN Length = 1401 Score = 85.3 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 26/181 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D+ETTGL +E+G + + + V+ + I+ + + Sbjct: 387 EFVVFDIETTGLSNINDEIIEIGAVKIKNKK--------IVDTFETFVNPQIPISSFITK 438 Query: 64 --GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP--FSPLT 118 G+ + + + ++ +G N FD + + + + + L Sbjct: 439 LTGIDESMVKDAPLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLD 498 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H DL + LD +AE V +++ H A+ DA ATA F Sbjct: 499 TLELSRHLYQDL-------------KNYKLDTLAEFFEVKLLHHHRAVEDAKATAEIFIK 545 Query: 179 L 179 + Sbjct: 546 M 546 >UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0B3W0_BRUME Length = 234 Score = 85.3 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 69/188 (36%), Gaps = 23/188 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLL----NVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 IV D ETTGL+ +E+G + TG + + + Q P A+ ++G Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQ---VHPDALAVHGIS 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L L + A E +++ G N FD + + + L Sbjct: 61 NEQL----LDKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAEL-------ARLDQAE 109 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + + D A A K I P LDA+ +R G+ +R H A+ DA A + L Sbjct: 110 ITSEHIVDTLALARRKHPIGPN---SLDALCKRYGIDNSHRTLHGALLDAQILAEVYIEL 166 Query: 180 RHTAAAHL 187 L Sbjct: 167 IGGKQTAL 174 >UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS5_PARDP Length = 659 Score = 85.3 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 62/176 (35%), Gaps = 17/176 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +V D ETTGLD V++ L + G V+ P + ++G + Sbjct: 454 VVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITD--- 510 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 A + N FD + R F + Sbjct: 511 -AMVAGAPDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHFD---------N 560 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDML 179 ++ D +A + + LDA+ ERLG +P RH+A+GDA ATA + L Sbjct: 561 QVLDTVLLSA--MLWGQSAPHSLDALTERLGIVIPPEARHTAMGDARATAEAYLRL 614 >UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes RepID=Q67P96_SYMTH Length = 1475 Score = 84.9 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 58/181 (32%), Gaps = 17/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 + +V+D+ETTG +E+G + GE + F + + P+ ++ Sbjct: 453 EFVVLDIETTGFSPIGDDIIELGAVRCRGGEIVDSFQSFVRPTKPVP--PEVQKLTNITP 510 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + A A ++ N FD + + Sbjct: 511 DMLEGA----PEAAEALRAFFQFVGDAIVVAHNAQFDYSFLR-------YHRQKYLGEEF 559 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L L + + L A+ + L VP+V+ H A DA A L Sbjct: 560 ANPVLDTL---TLARAVLPHMRSHSLAALTKELQVPLVDHHRADADAKTAAMVLMKLLER 616 Query: 183 A 183 A Sbjct: 617 A 617 >UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z9S3_9FIRM Length = 1474 Score = 84.9 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 24/183 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAM-EINGYY 61 + +V DLETTG + +E+G + V+ G+ + F + E + + IN Sbjct: 408 RYVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDRFSTFVNPEIPIPFRIEKLTSIN--- 464 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP--FSPLTV 119 + + + ++ + + N FD + + + F+ + Sbjct: 465 ----DEMVIDAPKIEEILPQFMEFCKDSVMVAHNSDFDMSFIEANCKRQDLECDFTVIDT 520 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + L Y LD VA+ LG+ + + H A+ DA TA F L Sbjct: 521 VAMSRYLIIGLGRYK-------------LDNVAKALGIVLDHHHRAVDDAECTALIFLKL 567 Query: 180 RHT 182 Sbjct: 568 CKM 570 >UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C5FA2 Length = 285 Score = 84.9 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 22/188 (11%) Query: 4 QLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VVD+ETT +E+G + + GE V+ + ++I Sbjct: 16 EFVVVDIETTAFSIQKGGRILEIGAVKIKNGE--------IVDNFSTLVNPELKIPKKIT 67 Query: 63 R--GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + + +++ + N +FD + + T+ Sbjct: 68 ELTKITNDMVKDAPYIGNVLQKFNEFISDSVIVAHNASFDWD--------RFLKPALATI 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 G H++ D + + K + L + L VP+ H AI DA ATA CF L Sbjct: 120 GIKSSHKVMDTVSLS--KFTFPDKKKHTLIDLCSYLEVPLEKNHRAIDDAIATAKCFLKL 177 Query: 180 RHTAAAHL 187 + A L Sbjct: 178 KALNAEKL 185 >UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB Length = 688 Score = 84.9 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 65/184 (35%), Gaps = 17/184 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D ETTGL V++ L + G L + P A + Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRVHHISD 553 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++A A D+ +G N FD + +GR + Sbjct: 554 DMVQDA---PDIIEAGRRFHDFCQGAVLVAHNAPFDLAFL---------RLKEKVIGRRF 601 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDMLRH 181 + + +AG D + LDA+ ER G+ P RH+A+GD ATA F + Sbjct: 602 DNPVLCTVLMSAGLF--DHSGQHTLDALCERFGITIPPEARHTAMGDTVATAEVFVRMLG 659 Query: 182 TAAA 185 A Sbjct: 660 LLQA 663 >UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Proteobacteria RepID=DPO3E_HAEIN Length = 256 Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 19/183 (10%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D ETTG++ Y+ +E+G + + HI ++ DP A++++G Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVHGI 67 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + + D++ G N FD + + ++ + Sbjct: 68 TDEMLADK----PEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDIC 123 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + D A + P + LDA+ +RLG+ R H A+ DA A + M Sbjct: 124 -----LVTDTLQMA---RQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 179 LRH 181 + Sbjct: 176 MTG 178 >UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothiorhodospiraceae RepID=Q0A739_ALHEH Length = 729 Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 17/177 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 +V D ETTGL V + + + G L + P ++ +G ++ Sbjct: 536 YVVFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNPGRTIPRSSILFHGIHD 595 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + ++ + N AFD + + R Sbjct: 596 TTVADK----PRIETVLPRFHTFVGDSVLVAHNAAFDMKFIRLKERR--------CGVRF 643 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L L D T L+A+A RLGV V +H+A GDA TA F L Sbjct: 644 DNPVLDTLLL---SVFLHDHTADHTLEAIAARLGVEVTAQHTAWGDALVTARVFACL 697 >UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI24_RHOM4 Length = 565 Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 65/185 (35%), Gaps = 28/185 (15%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER- 63 +VVD ETTG +E+ + V G VE+ A + + R Sbjct: 8 FVVVDTETTGSGPA-DRIIELAAVRVQGGR--------IVERFATLINPGRSVPPFITRL 58 Query: 64 -GLYREAL-TEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS--MPFSP-LT 118 G+ L + D+L N AFD ++ + P +P L Sbjct: 59 TGITTAMLVGRPSADEVLPDFLDFLGDGVLVAHNLAFDRKMLEAELQRIGLAWPGNPALC 118 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R+ L L A +GLD + +PV NRH A+GDA ATA Sbjct: 119 TLRLARRLLPGLPA-------------KGLDGLIRFYQIPVENRHRALGDAEATAHVLLR 165 Query: 179 LRHTA 183 L A Sbjct: 166 LLEEA 170 >UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26FQ2_9BACT Length = 466 Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 26/180 (14%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER- 63 VVD+ETTG E+ ++ + +++ ++ + I Y Sbjct: 8 YCVVDIETTGNRMTGNRMTEICIVRMR--------GDTILDKYSSLIDPEVLIPDYITTL 59 Query: 64 -GLYREAL-TEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT--YSMPFSPLTV 119 G+ + + A E+ ++ + F N FD ++ + + L Sbjct: 60 TGIDNAMVASAPVFADVAEEILNFTKDYIFVAHNVNFDYNVLRNEFKRLHHDFKRKKLCT 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ + + +Y+ GKL + +G+P++NRH A GD AT F L Sbjct: 120 VRLSRELIPGMRSYSLGKL-------------CDDIGIPLINRHRAEGDTDATVILFQKL 166 >UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales RepID=C4PPS2_CHLTJ Length = 250 Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 25/183 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHIT-VEQLAAADPKAMEINGYYE 62 + + +D ETTGLD +E + E + V + E+ +A ++ +I+ + Sbjct: 8 EFVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVEFLIHPERAVSA--ESQKIHKISD 65 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRG-----NTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 + +GEV ++G + G + FD +++++ Sbjct: 66 --------AMLRDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLG------ 111 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 HH + D A + L+A+A VP H A+ D F Sbjct: 112 ETLLPKHHYVIDTLRLAK---EYGDSPNNSLEALARHFNVPHQGNHRAMKDVEMNVKVFK 168 Query: 178 MLR 180 L Sbjct: 169 HLT 171 >UniRef50_Q89MS5 Blr4117 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89MS5_BRAJA Length = 223 Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 15/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 + +V+D ETTGL+ T V + + + L V + + +A++I+ Sbjct: 31 EFVVIDCETTGLNVRTDNVVAIAAIKIRGNRILTSARFEAIVHPDSELEAEAIKIHRLRR 90 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPLTV 119 + ++ G FD ++ + V +P + V Sbjct: 91 ----SDVEASPIVWKVLPGFLHFIGPRPLIGYYVDFDIAMLDKYILPLVGIELPNERIEV 146 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+++ R G + A+ L +P + +H A DA TA F L Sbjct: 147 SRLYYER-------KYGNAPPNTEVDLSFAAILHDLCIPPLGQHDAFNDALMTAMMFLQL 199 Query: 180 RHTA 183 R + Sbjct: 200 RDLS 203 >UniRef50_A3V111 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V111_9RHOB Length = 469 Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 66/185 (35%), Gaps = 18/185 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 +V D ETTG + V++G L V G+ + A P + ++ + Sbjct: 275 TYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLVNPGRAIPASSTAVHRITD 334 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 A + + R N FD + R M F Sbjct: 335 ----AMVKDAPDMVHAGRKFHSFARDAVLVAHNAPFDLSFFHRYAPKIGMKF-------- 382 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLR 180 H L + A + TE LD +A+RLG+ +++ RH+AIGDA AT F + Sbjct: 383 DHPVLDTVLLSA---VLFGITEGHTLDELAKRLGIELLDKHRHTAIGDAIATRDIFLRMI 439 Query: 181 HTAAA 185 A Sbjct: 440 PMLEA 444 >UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphingobacterium spiritivorum RepID=C2FTR2_9SPHI Length = 469 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 28/183 (15%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VD+ETTG + E+ + D H ++ EI Y+ Sbjct: 11 RIYAIVDIETTGGYAANSGITEIAIYLHD--------GHQVIDSYQTLINPHKEIP-YHI 61 Query: 63 R---GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT--YSMPFSP 116 + G+ E LT+ ++ +L F N FD + + Y Sbjct: 62 QMLTGITPEMLTDAPSFEDVAADIYSFLENKVFVAHNVNFDYSFIYAHLKACGYQWKSPK 121 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L R+ + ++Y+ G L +RL +P+ +RH A GDA AT F Sbjct: 122 LCTVRLARNIFKGFSSYSLGNL-------------CQRLDIPISDRHRAAGDAKATVILF 168 Query: 177 DML 179 + + Sbjct: 169 ERI 171 >UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A526_BIFAD Length = 256 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 18/188 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EING 59 M +DLETTG VE+G + V G + + + P+ + +NG Sbjct: 82 MVDNYTSIDLETTGFSPSDDRIVEIGAIRVRNGRPVK--RYSQLINPQRPLPEEITRLNG 139 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLT 118 + + + + ++ +T G N FD+ + M Sbjct: 140 LTD----ADLRNQPTVDQVLPDFIRFIGNDTLIGHNINEFDAAFLLANTTRLGMR----- 190 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + L + L + R G+ H A DA TA C++ Sbjct: 191 --HIGNKTIDTLPL---DRALYPEEPKHRLVDIIRRFGIAQTESHRAADDALQTAQCYET 245 Query: 179 LRHTAAAH 186 ++ A+ Sbjct: 246 MKAYMKAN 253 >UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAB0_9FIRM Length = 225 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGE-SLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ETTGLD + +E+G ++V G S F +T E + P + G + Sbjct: 57 YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGRFQTFLTPEPYQSLSPFITNLTGITD- 115 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++D+L G T G N FD + T + Sbjct: 116 ---SDLVGAPTFREILPRLRDFLGGYTLVGHNVNFDINFL-------YDRIYRETGEHLN 165 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L K + L+A+ + G+ N H A+ D T D L Sbjct: 166 NPYLDTK---KLAKTVVPGLSHYSLEALCKHFGI-AGNHHRAVDDCELTEKVLDALWRLK 221 >UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gammaproteobacteria RepID=Q1QW65_CHRSD Length = 253 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 11/184 (5%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG+D D +E+G + V H + DP+A+E++G Sbjct: 4 IVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGITNER 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV-W 123 + E + W +++RG N AFD + + +G V Sbjct: 64 VADEPVFADIADAFW----EYIRGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPVAD 119 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 + + D A A + P + LDA+ +R G+ R H A+ DA + + + Sbjct: 120 YCSVLDTLAMA---RKLHPGQRNNLDALCKRYGIDNGRRVLHGALLDAEILSDVYLTMTG 176 Query: 182 TAAA 185 A Sbjct: 177 GQTA 180 >UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=Q16B76_ROSDO Length = 465 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 18/179 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 +V D ETTGLD T V++G + V G+ + T+ P + ++ + Sbjct: 272 TFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPPGSTAVHQISD 331 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +A A+ + + N FD + RQ F Sbjct: 332 -AMVADAPGFDVACRAFHQFAEH---AVIVAHNAPFDMAFLRRQCRDQDYAF-------- 379 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDML 179 + L + A + + LDA+ +RL V + + RH+ +GDA ATA L Sbjct: 380 DNPILDTVHLSA---VVFGGSAEHTLDALCDRLNVHIPDDVRHTGLGDALATAKALVAL 435 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 64/182 (35%), Gaps = 21/182 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + + +D+ETTGL+ + +++ + E V Q + ++ + E Sbjct: 23 EFVAIDIETTGLNSEWDEIIQIAGMRFKGEE--------VVNQFVSLVKPKGKVPKFIEH 74 Query: 64 GLY---REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + +E T + +++ + G N FD + + V Sbjct: 75 LTHISPQELKTAPPIKEVLKDFCNFIGDSILVGHNIGFDFNFLNQFIVDNG-------GF 127 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + G++ + T L + G+ ++N H A DA AT F+ L Sbjct: 128 PISNMHWDTAEI---GRIYLPFTTDHKLSTLVSFFGIELMNAHQADADALATGKLFNALT 184 Query: 181 HT 182 + Sbjct: 185 NY 186 >UniRef50_B8R965 Putative DNA polymerase III epsilon subunit (Fragment) n=1 Tax=uncultured bacterium 1114 RepID=B8R965_9BACT Length = 312 Score = 83.7 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 16/178 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYYE 62 + +D ETTGLD V +G + + T+ + + P + I+G + Sbjct: 27 PVTALDTETTGLDPGRDRIVAIGAVRLHGRRLYPSRTFETLVRPGISIPASASAIHGIGD 86 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 A W + WL G G + FD ++ + ++ Sbjct: 87 ----AMVAGAPGMAEIWPRLSPWLAGRVVLGHHVDFDLAMIGAAARRHGFSWTE------ 136 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 D A A +D + LD A+R GV + RHSA+GD+ A + L Sbjct: 137 --PFALDTARLVA---ALDGSSPVDLDEAAQRHGVTLEGRHSALGDSLIAARVYLRLV 189 >UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clostridiales RepID=B8FYI4_DESHD Length = 1447 Score = 83.7 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 22/182 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 V+DLETTG T E+G++ + G+ + F + E+ A + +E+ + Sbjct: 423 TYCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQFGCFVNPEKPIPA--RVVEVTNITD 480 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV--ARQRVTYSMPFSPLTVG 120 + R+A T Q ++ +++ G+ N FD + + + Y ++ L Sbjct: 481 -DMVRDAETIDQVFP---KILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFDYTYLDTL 536 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + D Y G+ +A+ LG+ V H A+ D T F+++ Sbjct: 537 SLAKELFPDYKTYKLGR-------------IAKNLGIKVEVAHRALDDVGTTVKVFNIMV 583 Query: 181 HT 182 Sbjct: 584 DM 585 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 83.7 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 21/176 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYER 63 + +DLET+GLD +E+GL+ + G+ + T+ + P ++ + G + Sbjct: 4 FVALDLETSGLDCLQDEIIEIGLVKMVDGKEIDS--FSTLIRPKGILPVKIKRLTGIKDH 61 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + ++ G N FD ++ + + + Sbjct: 62 ELQDA----PKLQEVLPVILQFIADLPLVGHNVKFDYDFLSTAVQS-PLANPLYDTLELS 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + + G L LG+ + N+H A+ DA A L Sbjct: 117 KYLMPGASNHRLGYL-------------CSYLGIDIPNQHRALDDARGAAMLLIHL 159 >UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIT4_RHOM4 Length = 616 Score = 83.4 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 21/172 (12%) Query: 7 VVDLETTGLDYDT-ALPVEVGLLNVDTGE---SLYFVPHITVEQLAAADPKAMEINGYYE 62 V D ETTGL + + +G + + G F + + + D ++ ++G Sbjct: 424 VFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPRRPISLD--SVRVHGIQP 481 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L ++ ++ + R G N AFD + ++ + F Sbjct: 482 -VLLQDKPPIEEVLPRFYRFA---RDTVLVGHNVAFDLKFIRQKEKALGLRF-------- 529 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 L + A + GLD +A G+ V RHSA+GDA TA Sbjct: 530 DQPVLDTMLLAAVVD---PERQHYGLDELAAAFGIEPVGRHSALGDALITAE 578 >UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum RepID=DPO3E_TREPA Length = 215 Score = 83.4 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 15/176 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYYER 63 D ETTGL + +E+G + D T+ A P + +IN + Sbjct: 15 FTAFDTETTGLKAEEDRIIEIGAVTFD--RKGIIARFSTLIFPDRAIPPDVSKINHITDD 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + +++G N FD + + L + Sbjct: 73 MLVNK----PRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAEL--------SLCKKQPL 120 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 H++ D A A L +A + G+ V H A DA F + Sbjct: 121 SHKVVDTYAMAQAVFPGLGRHQYRLQNLALQFGLTVHAAHRAEDDARVCMELFTTM 176 >UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2 Length = 233 Score = 83.4 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 64/183 (34%), Gaps = 16/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + +D+ETTGL+ +EVG+ V+ G + V + + E+ G Sbjct: 1 MINRYVALDIETTGLNPAVDRIIEVGMARVEDG-QITQKYSTLVYPGISVSERITELTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + GE+ +++ G N FD + + + V + + Sbjct: 60 HNEELTGK----PRIEDIIGEITEFIGDWPVLGHNVIFDFSFLKKAAVNNGLTIND---- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + E + L + + + H A DA + + + L Sbjct: 112 -------DGIDTLKLARRILPEVEHKSLSFLCQYFNIDPGRSHRAYDDAVSASLLYAKLE 164 Query: 181 HTA 183 Sbjct: 165 EIK 167 >UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A7U0_THEAQ Length = 627 Score = 83.0 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 21/173 (12%) Query: 8 VDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYYERGLY 66 DLETTGLD + +G +++ L + + PKA E++G + Sbjct: 446 FDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLT----W 501 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + + + +L G+ N AFD + + + Sbjct: 502 EMLKDKPKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRK--------------VGIDQPP 547 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L D A L + L+ +AER GVPV+ RH+A+GDA TA + + Sbjct: 548 LVDTLLLA--HLLFPDLKDHRLERLAERFGVPVLGRHTALGDALMTAEVYARM 598 >UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma RepID=Q2NJG3_AYWBP Length = 1572 Score = 83.0 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 16/177 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 +V DLETTGL +E+ + + G + F I +Q I + Sbjct: 480 TYVVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGEFQKFIDPQQ--KLTKTITNITNITD 537 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L +Q + + + N +FD + + + P Sbjct: 538 EMLQ----GQQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEP------ 587 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + D A + + + + L +A V + + H A+ DA AT+ F + Sbjct: 588 --KPIIDTMALSQ-RYFSNLLKYFSLKRLATVFKVKLEDHHRALADATATSEIFIKM 641 >UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF57_9CLOT Length = 319 Score = 83.0 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 21/179 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+DLETTG D +E+G L + GE + +T Q D +++ G Sbjct: 22 YVVIDLETTGYDPHRDEIIELGALRIHEGEVVESFSSLTKPQ-RDLDDYIIQLTGISNEM 80 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR--- 121 L + + + + D++ + G N FD + + S+ + Sbjct: 81 LA----SAPELSDVFPRYLDFIGDSIVVGHNVHFDVNFIYDTCIKESLKLFTNDLVDLLW 136 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L DL ++ + V+ + V H ++ D T CF+ R Sbjct: 137 LSRKLLPDLTSHKLCR-------------VSSHFNICVEGMHRSLFDCKTTFECFEKCR 182 >UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQP7_9ACTO Length = 286 Score = 83.0 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 65/179 (36%), Gaps = 26/179 (14%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVD+ETTGL + VE+ L+ ++ G + + V+ DP + Sbjct: 36 PFVVVDVETTGLSSTSDRIVEIALVRIEGGRVVDEWATL-VDPGRDPDPT-------FVH 87 Query: 64 GLYREALT-EQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM---PFSPLTV 119 + E L+ A GE+ L G N F+ +A++ + P + Sbjct: 88 HITAEMLSGAPTFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGISTAPLPAVCT 147 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R+ LA L + G+ + + H+A+GD ATA Sbjct: 148 LRLARQVLAA--------------PNFQLVSCCTVYGIELHDAHTALGDTRATAQLLPR 192 >UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFC5_9ACTN Length = 291 Score = 83.0 bits (203), Expect = 5e-15, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 18/180 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITV--EQLAAADPKAMEINGYY 61 + +VVD+ETTGL+ + +E+ + V G + +L+ A ++ G Sbjct: 127 EYVVVDIETTGLNPNKDEIIELAAIRVRGGRETDAFQCLVRCGGELSDAI---AKLTGLS 183 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L E L + A +++ + N FD + Sbjct: 184 HSRLMAEGLILE---NALMNFLEFVSDDLIVAHNAEFDIGFIQSACEELDWDDFDNDY-- 238 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L A + + L ++AERL + H A+ D T L Sbjct: 239 --------LDTLALARKKLPQISDHRLSSLAERLHLENRQPHRALSDCRLTHCLLVKLNE 290 >UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kordia algicida OT-1 RepID=A9DMS8_9FLAO Length = 457 Score = 83.0 bits (203), Expect = 5e-15, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 67/190 (35%), Gaps = 29/190 (15%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL--YFVPHITVEQLAAADPKAMEING 59 ++D+ETTG + E+ + D GE++ F + L A+ Sbjct: 4 NPTYTIIDVETTG---RSNKITEISIFKFD-GETIVDEFTSLVNPNVLIPTHITALT--- 56 Query: 60 YYERGLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT--YSMPFSP 116 G+ + + A EV + + F N FD ++ + Sbjct: 57 ----GIDNAMVADAPTFAEIAKEVLSITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKK 112 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L R+ + +Y+ GKL + L + + +RH A GDAAAT F Sbjct: 113 LCTVRLSRALIPGFKSYSLGKL-------------CKSLNIHISDRHRARGDAAATVILF 159 Query: 177 DMLRHTAAAH 186 +L AA Sbjct: 160 QLLLTKDAAA 169 >UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISI0_RHOCS Length = 699 Score = 82.6 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 17/183 (9%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEING 59 + +V D ETTGL+ V + + + G L T+ A P A I+G Sbjct: 503 SLSYVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHG 562 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + ++ N AFD + ++ Sbjct: 563 ITD----AMVAEAPRAEAVLPPFRAFVGDAVLVAHNAAFDLKFLRLKQRAAG-------- 610 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R L + + LD +A RLG+ +V+RHSA+GD+ TA F L Sbjct: 611 VRFDGPVLDTMIL---SRQIQGDHGEHSLDGLAARLGIGLVDRHSAMGDSLMTAAIFLRL 667 Query: 180 RHT 182 Sbjct: 668 MDM 670 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 82.6 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 21/180 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGE-SLYFVPHITVEQLAAADPKAMEING 59 + + +V+D+ETTGLD +E+ + ++ G + F + + P A+E Sbjct: 2 LPQTYVVLDVETTGLDPARDRIIEIAAVRLEGGNITRQFQTLVNPGRPI---PPAIERLT 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + REA + + D R G N FD + + + Sbjct: 59 GISDAMVREAPPLPEVLPG---LLDLFRDAIPVGHNGTFDLAFLNQ------------AL 103 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 G WH L D A + ++ LD +++ L + H A+ D TA + L Sbjct: 104 GHGWHSPLLDTLALS--RILFPCLASHRLDYMSKYLTLEATGHHRALDDVLTTARLLENL 161 >UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria RepID=B1Y7R5_LEPCP Length = 731 Score = 82.6 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 17/175 (9%) Query: 7 VVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYYERG 64 V D ETTGL+ D +++G + G+ + P A + I+G Sbjct: 543 VFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQRPIPPAGIPIHGIKPDM 602 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + + N AFD + ++ + F Sbjct: 603 VA----GQPTIDHVLPAFHAFAQDTVLVAHNAAFDMRFLQLKQDRTGLVF--------DQ 650 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L L A + E L+A+AER + VV RH+A+GDA TA F L Sbjct: 651 PVLDTLLLSA---VVHPNQESHRLEAIAERFSITVVGRHTALGDAMVTAEVFVRL 702 >UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli RepID=DPO3_LACSS Length = 1446 Score = 82.6 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 71/186 (38%), Gaps = 17/186 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGY 60 + + ++ D+ETTGL +E+ + + GE + F I E+ +A ++ Sbjct: 422 SAEYVIFDVETTGLSAVYDSIIELAAVKMRDGEVVASFDEFIDPERPLSA--FTTQLTSI 479 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + A +++ AG N +FD + + + + Sbjct: 480 TNEMVHGAK----KEAEVLAMFKEFTGDAVLAGHNVSFDMGFLN-----AGYERNDIDL- 529 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + L ++ + LD++ +R + + + H A DA +T + L Sbjct: 530 -IDNPVIDTLEL---SRMLHPEYKNHKLDSLTKRYKINLEHHHRANADAESTGYLLYKLE 585 Query: 181 HTAAAH 186 AA + Sbjct: 586 KEAAEN 591 >UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodobacterales RepID=A8LQ52_DINSH Length = 485 Score = 82.6 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 68/186 (36%), Gaps = 19/186 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYY 61 + ++ D ETTGL + ++ V G+ + T+ P A I+G Sbjct: 290 KYVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGIT 349 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +A A+ D G N FD R++ R Sbjct: 350 D-AMVADAPDFLTAGRAFHGFAD---GAVLIAHNAPFDMAFFYRKQAEIG--------AR 397 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDML 179 H L + A + TE LDA+AERL V + RH+A+GDA AT F L Sbjct: 398 FDHPVLDTVLLSA---VIYGQTEQHSLDALAERLNVTIPEEARHTALGDALATTEVFLKL 454 Query: 180 RHTAAA 185 A Sbjct: 455 LPMLQA 460 >UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class) RepID=A5UUI5_ROSS1 Length = 956 Score = 82.6 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 23/189 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + I +D+ETTGL+ +E+ + + E L T+ Q + P +N Sbjct: 1 MNQIYIAIDVETTGLEAGVDEIIEIAAVKFNADEVLET--FSTLVQPVHSLP----LNSS 54 Query: 61 YERGLYREAL-TEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 G+ + L + + A +L+ G N FD ++ Q + P Sbjct: 55 RLTGITADMLASAPRFAEVAPRFAAFLKNYPLVGHNVEFDLRMLRAQGMRLPQP------ 108 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD-M 178 + L + T L A+A LG+ H A+ DA T F + Sbjct: 109 ---------AFDTFELATLLMPRTPAYRLSALAATLGIHHDEAHRALSDADVTRQIFLYL 159 Query: 179 LRHTAAAHL 187 LR A L Sbjct: 160 LRRIEALPL 168 >UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Deltaproteobacteria RepID=C7LWI5_DESBD Length = 244 Score = 82.6 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 11/193 (5%) Query: 1 MAKQL-----IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM 55 + L V+D E TGL V +G + V + + + + PK Sbjct: 37 QTRPLEDYVYTVLDTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRPSIPLPKTS 96 Query: 56 E-INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ-RVTYSMP 113 I+ + + A E+ ++ +G G + D + + R R + P Sbjct: 97 TLIHRITPEAIAQA----PPLAEVLPELIEFCKGTLIVGHHVGLDMSFLNRACRKNHGQP 152 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + + + L + + + L +A +P H A+GDA TA Sbjct: 153 LANPCLDTMRMAMLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQTA 212 Query: 174 FCFDMLRHTAAAH 186 + F L A + Sbjct: 213 YLFIYLAKKIAGN 225 >UniRef50_D2QAZ6 DnaQ DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium RepID=D2QAZ6_9BIFI Length = 317 Score = 82.6 bits (202), Expect = 7e-15, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 62/179 (34%), Gaps = 18/179 (10%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +K VVD ETTGL+ +E+GL++V L E L + Sbjct: 3 SKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLE----DEHETLIRVHRDIGA--QW 56 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E + + E++D L G F N AFDS + + + Sbjct: 57 IHHISAVELIHAPEFEGIARELRDLLAGRVFVAHNVAFDSKFLLSEYRRLG-----TDIP 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 H L + KL+ + L G+ + HSA+ DA ATA L Sbjct: 112 VNSHTMLCTM------KLSRSLIGVGSLADCCREFGIDNEDAHSALSDAHATALLLGRL 164 >UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquificaceae RepID=DPO3E_AQUAE Length = 202 Score = 82.6 bits (202), Expect = 7e-15, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 17/177 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 +V+DLE TG D + + +++ + V+ G + T+ P+ ++ + G Sbjct: 18 TFVVIDLEATGFDVEKSEVIDLAAVRVEGG--IITEKFSTLVYPGYFIPERIKKLTGIT- 74 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + E +++ N G D + + Y R Sbjct: 75 ---NAMLVGQPTIEEVLPEFLEFVGDNIVVGHFVEQDIKFINKYTKQY----------RG 121 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R L + + L +AE G H A+ DA TA F + Sbjct: 122 KKFRNPSLCTLKLARKVFPGLKKYSLKEIAENFGFETNGVHRALKDATLTAEIFIKI 178 >UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Betaproteobacteria RepID=Q21VB4_RHOFD Length = 476 Score = 82.2 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 63/190 (33%), Gaps = 26/190 (13%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +++DLETTG + E+ + ++ G+ V + + I+ + Sbjct: 1 MLPCYVLLDLETTGGNPVHDRITEIAAVRIENGQE--------VARWSTLVNPGCSISPF 52 Query: 61 YER--GLYREALTEQQTAVAWGE-VQDWLRGNTFAGSNPAFDSTIVARQRVTYS--MPFS 115 + G+ + + + L G N FD + + + Sbjct: 53 IQHLTGISNAMVRGAPGFETVAQHLLALLDGAVLVAHNVRFDHGFLLNELARLDVALRVK 112 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 L R+ +L + GLDA+ +R G+ + RH A+GD Sbjct: 113 TLCTVRLS-------------RLLYPQHKGHGLDAIMQRHGIRTLERHRAMGDVEVMQAW 159 Query: 176 FDMLRHTAAA 185 + R A Sbjct: 160 LQIARQEHGA 169 >UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XIW2_9CAUL Length = 247 Score = 82.2 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 22/186 (11%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVD--TGESLYFVPHITVEQLAAADPKAMEI 57 MA++ IV+D ETTG D +EVG + + F + E+L AD A+ + Sbjct: 1 MARE-IVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPAD--AIRV 57 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + + A ++ D++ N FD + + P Sbjct: 58 HGITD----DKVKDAPKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPL--- 110 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFC 175 + R D A + P LDA+ +R + +V+R H A+ DA A Sbjct: 111 ----LHETRWIDTLQLAQKRF---PGMANSLDALCKRYKISLVDRTLHGALIDARLLAEV 163 Query: 176 FDMLRH 181 + L+ Sbjct: 164 YLELKG 169 >UniRef50_Q67M39 DNA polymerase III-like protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67M39_SYMTH Length = 390 Score = 82.2 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 15/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK--AMEIN 58 M L+V+D ETTGL+YD +++G++ + E + +L + AM++N Sbjct: 20 MRYNLVVIDTETTGLEYDQHRIIQIGVVAIK--EQRIVKTWESKLRLIDGEVSAYAMQVN 77 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + E + + + + G N +FD + + + +P Sbjct: 78 RLDPSDMRSEKYPHPKAVLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFARHGLPQ---- 133 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 W D A L P L+++A V + H A+ DA ATA Sbjct: 134 ----WQGNFVDSMALGRALL---PDLSASLESLARHFRVELTQHHDALADAVATAHVLLH 186 Query: 179 LRHTA 183 L A Sbjct: 187 LLDLA 191 >UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria RepID=C9S0C0_GEOSY Length = 1444 Score = 81.8 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 17/178 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 + +V D+ETTGL +E+ + V GE + F+ + ME+ G Sbjct: 427 ETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSV--TTMELTGIT 484 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + DW T N +FD + + + + G+ Sbjct: 485 DE----MVKDAPKPDEVLARFVDWAGDATLVAHNASFDIGFL-------NAGLARMGRGK 533 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + L + + L+ + ++ + + H AI DA AT L Sbjct: 534 IANPVIDTLEL---ARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRL 588 >UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Betaproteobacteria RepID=Q0AE35_NITEC Length = 234 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 15/181 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D ETTGLD VE+ + V S H + +D A+ ++G Sbjct: 2 RYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNPGRESDEGALRVHGLSR 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + E +++ N FD + R+ L Sbjct: 62 EFLQDK----PAFQEICSEFLEFIEDAEILIHNAPFDVGFINRELG-----LIRLEPMHN 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLR 180 + ++ D A + P + LDA+ ER + +R H A+ DA A + + Sbjct: 113 YCLQIVDTLMLAK---ELHPGKRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMT 169 Query: 181 H 181 Sbjct: 170 R 170 >UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae RepID=C1DWW1_SULAA Length = 205 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 22/179 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYYER 63 ++VDLETTGL+ + +E+ L V+ G + H V+ P + ++ G Sbjct: 11 FLIVDLETTGLNPVNSEIIEIAALRVEGGIVVD-KFHTLVKPSIGFIPTYITKLTGIT-- 67 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVAR---QRVTYSMPFSPLTVG 120 + + + + + + N FD + + Q S+ L Sbjct: 68 --NALVVDKPTIEEVFPQFLKFSENSIIVAHNAQFDMSFLNSVSYQITGRSIQNPVLCTQ 125 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + DL + + L +A +P +H A+ DA T F + Sbjct: 126 NLAKRLFPDLPS-------------KSLVNLAYHFNIPYNKKHRALEDALVTYELFKKI 171 >UniRef50_Q3AAH9 Putative DNA polymerase III, epsilon subunit n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AAH9_CARHZ Length = 222 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 57/174 (32%), Gaps = 15/174 (8%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V+DLETTGL + +G + + G H V + G Sbjct: 37 TYTVIDLETTGLKPFQGDEIIAIGAVKIINGNITRPAFHAYVNPQREIPEVVQRLTGISP 96 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + D+ R + G + FD + + + G+ Sbjct: 97 KTVQNA----PPLTNTLTTLLDFARNSVIVGHSVNFDLAFLNKHLSSL--------TGKK 144 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 RL D +P L+ A++ + + RH+A+GDA A F Sbjct: 145 LTPRLLDTVDLGIYLFPREPN--YSLENFAQKFAISLQGRHTALGDAVICAKVF 196 >UniRef50_B2A7J4 DNA polymerase III, epsilon subunit n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7J4_NATTJ Length = 864 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 21/179 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L+V D+ETTGLD +E+ L G+ + + ++ +++G ++ Sbjct: 499 KLVVFDVETTGLDTTKDEIIELAALK--AGKDGVVDEFHEYLRNSKPVGESFQVHGISDQ 556 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA---RQRVTYSMPFSPLTVG 120 L + +++ +++ G N +D T+V ++ + + Sbjct: 557 VLLEQGKPPEKS---LASFTNFIDDCDLVGHNVNYDITMVENQCKKLLNQDLELHGYDTV 613 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L E L+++ E L + H A+ D AT +L Sbjct: 614 DISRRYFPRL-------------EKYNLESLCEDLQISSKPTHRAMDDVEATFELLQIL 659 >UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=A0K225_ARTS2 Length = 406 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 15/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M VVD+ETTGL E+ +++VD ++ V P+ I+G Sbjct: 1 MNAGFAVVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETLVNPQRDLGPQ--HIHGI 58 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L +V + L G N FD V+ + + Sbjct: 59 R----AADILHAPVFGDIAHDVMELLAGRVLVAHNVHFDYRFVSHELGRAGLELPFEVHD 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +LA AG+ L + G+ + N HSA DA A A Sbjct: 115 CLCTMKLARRYLPGAGR---------SLKDCCDSFGLNLANAHSAGDDAEAAAHVLSNYL 165 Query: 181 HTAAAH 186 + + Sbjct: 166 RMDSGN 171 >UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3L4_MAGSM Length = 237 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 19/183 (10%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGY 60 ++LIV+D ETTG D +E+G + + ++ E+ AD A +++G Sbjct: 2 ERLIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGDERQWYVNPEREIPAD--ATKVHGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + E ++ ++ N FD + + + Sbjct: 60 TD----ADVANSPKFKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRLNKRLVMPM-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 R D A K P LDA+ +RLGV R H A+ DA A + Sbjct: 114 ----ERAIDTIPLARRKF---PGSTVNLDALCKRLGVDNSGRTFHGALLDAHLLAEVYVE 166 Query: 179 LRH 181 L Sbjct: 167 LMG 169 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 70/182 (38%), Gaps = 16/182 (8%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M++ +V+DLETTG D A +++G + V+ G ++ V+ + P E+ G Sbjct: 1 MSQSFVVIDLETTGNSPDQGAKMIQIGAVKVE-GCTITDRFSTFVDPGCSIPPFITELTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 ++ + + + ++ ++ G++ N FD + Q T + Sbjct: 60 ITDKDVEGAPVFREIA----TDLLAFMEGSSLVAHNVPFDKGFLEAQLETEGLRLPKCCQ 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 D + ++ + E L ++ L + H A DA TA F L Sbjct: 116 F--------DTVELS--RVLLPTQESYKLSELSSSLDMDHDRPHRADSDAEITAELFIKL 165 Query: 180 RH 181 H Sbjct: 166 LH 167 >UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6 Tax=Rhodobacteraceae RepID=DPO3E_RHOCA Length = 704 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 62/180 (34%), Gaps = 19/180 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYY 61 +V D ETTGL V++ + + G + T+ P A ++G Sbjct: 509 TFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGIT 568 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E T A + G N FD + R+ + F Sbjct: 569 E----AMVATAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIGKNF------- 617 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDML 179 + L + A + E LDA+ RLG+ + RH+A+GD ATA F L Sbjct: 618 -DNPVLDTVLLSA---VVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRL 673 >UniRef50_D0RQR6 DNA polymerase III PolC-type (PolIII) n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQR6_9RICK Length = 223 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 19/190 (10%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITV--EQLAAADPKAMEINGY 60 V D ETTGL+Y+ + V + V + + + + P+ +I+ Sbjct: 26 TFSVFDTETTGLNYNSGDKIISVSGVKVQ-NFQIDTEGKLDEFCDPMVEITPENEQIHHI 84 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 R + + + + + + + N FD + + Sbjct: 85 SNRMVKGK----PNIYDLESKFRGFFKRSVLVAHNVKFDCNFLISNLSHTKLESRIREAV 140 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFD- 177 ++ D Y+AG + L A+ + L + + RHS++GD+ TA F Sbjct: 141 KL------DTVLYSAGVY--PDLKSYELSALCDELNITHHDQLRHSSLGDSIITARLFIH 192 Query: 178 MLRHTAAAHL 187 +L+ + A ++ Sbjct: 193 LLKKSKAQNI 202 >UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=B4S124_ALTMD Length = 715 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 22/180 (12%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGY 60 A+ +VVD+ETTG + E+G++ + G+ + T+ P ++ + G Sbjct: 540 AQPYVVVDIETTGGNNSYNRITEIGMVKLVGGKEVD--RFQTLLNPQRRIPSSITRLTGI 597 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP--LT 118 + + A + + F N FD + ++ F + Sbjct: 598 SDDMVADA----PLFAEVADHIASFTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPKMC 653 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R L++Y+ L + + + + H A+ DA A A + Sbjct: 654 TVREMRRTHPGLSSYS-------------LANLTKHFHIDMEQHHRALSDAKAAAELLKL 700 >UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (Modular protein) n=2 Tax=Burkholderiales RepID=B3R8V7_CUPTR Length = 532 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 27/192 (14%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++ ++ VDLETTG D E+G++ V + + + M I + Sbjct: 29 LSRPIVFVDLETTGADAQRDRITEIGVVEVGPDGIVEWETLLDP---------GMSIPPF 79 Query: 61 YER--GLYREALTEQQTAVAWGE-VQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP- 116 +R G+ + + Q T + E + + L+G F N FD + + F Sbjct: 80 IQRMTGISDDMVRGQPTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFRAD 139 Query: 117 -LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 L R+ E GLDA+ R G+ RH A+ DA Sbjct: 140 VLCTVRLSRSLFPS-------------VERHGLDALIARFGLTPKGRHRALADAELLWQF 186 Query: 176 FDMLRHTAAAHL 187 + + T + L Sbjct: 187 WQKIHATYSVEL 198 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 64/181 (35%), Gaps = 24/181 (13%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEING 59 M++ +V+DLETTGLD VEVGL+ V+ G+ F + + A K++ Sbjct: 1 MSRTFVVLDLETTGLDPQADEIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLT--- 57 Query: 60 YYERGLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 GL L E + V +L G + FD + R Sbjct: 58 ----GLDDADLAERPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAG---------- 103 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + +L + L+ + L +P H A+ DA A A F Sbjct: 104 -----YRATQAYDTVDLARLVLPGLPSYRLELLCAHLDLPERPGHRAMEDARAAAGLFTA 158 Query: 179 L 179 L Sbjct: 159 L 159 >UniRef50_A7HHL1 Exonuclease RNase T and DNA polymerase III n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HHL1_ANADF Length = 238 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 17/184 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP--KAMEING 59 V+D E TGLD + +G + + G + V + A + + I+G Sbjct: 44 TMTFTVLDCEMTGLDPARDEILSIGAVRIRNGRIVMAERFYQVFKPTEAVSPKEVILIHG 103 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + R A + ++ + G + D + + + Sbjct: 104 LGPDEVSRGL----PLGDALERLLAFIGDSVVIGHFTSVDLSFLNAALASRKER------ 153 Query: 120 GRVWHHRLADLAAYAAGKLNIDP----TELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + L YA + P L+ + +G+P H A DA T Sbjct: 154 -SLKNPALDTRLLYAWWRRRTSPAGQAAADANLEDIVIEMGLPRYPAHHAFYDALTTGMV 212 Query: 176 FDML 179 F L Sbjct: 213 FLKL 216 >UniRef50_D2L4P4 DNA polymerase III, epsilon subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4P4_9DELT Length = 249 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 62/188 (32%), Gaps = 10/188 (5%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYER 63 + VD E TG D V +G + + L T+ + AA P A I+ Sbjct: 49 FVAVDTELTGFDPRRHALVSIGAVRLRGLSILPGEAFYTLVRPPAAVPRDATLIHRLTGA 108 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIV---ARQRVTYSMPFSPLTVG 120 L A A D+L G + D + AR+ + + + Sbjct: 109 ALADA----PPVAEALAAFLDFLGPAVVVGHHVDLDMGFLNAAARRHMGGELAAPCIDTL 164 Query: 121 RVWHHRLADLAAYAAGKLNIDPTE--LEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R+ A A G D E L A+ R G+P H A DA ATA+ F Sbjct: 165 RLAMALEEKRLAVAGGAGGPDGFERVDYRLPALCRRYGLPGFAAHDARADALATAYLFLY 224 Query: 179 LRHTAAAH 186 L Sbjct: 225 LARHCGRA 232 >UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, putative n=28 Tax=Streptococcus RepID=Q04L99_STRP2 Length = 816 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 19/179 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 + +VVDLE T A ++VG++ ++ GE + ++ + + A K E+ G + Sbjct: 7 RYVVVDLEATSTG-SKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIK--ELTGLTD 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L + + ++ D + F N FD+ ++A + Sbjct: 64 QRLAQA----PDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGY--------EL 111 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + R+ + ++ E L + LG+P+ + H+A+ DA ATA LR Sbjct: 112 RNPRVDTVEL---AQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLRE 167 >UniRef50_C5CEK5 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEK5_KOSOT Length = 180 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 66/182 (36%), Gaps = 16/182 (8%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+D ETTG A +E+ + V E +Y + + P ++ + Sbjct: 2 EFVVIDTETTGSSPHKGAELIEIAGVVVRDWEIIYEESFNELIKPKRHVPISITMITGIN 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + L + + D++R N FD + + + +G + Sbjct: 62 NLMLEDKLPIEIVLPRFY---DFVRDRVLVIQNAPFDLSFLD-------YFGKKIGIGEL 111 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D + + LD + RLG+ +RH A+GDA ATA F + Sbjct: 112 PNP-FVDTISLSRSLFR----GRHNLDIILARLGIFCEDRHRALGDAVATAKAFIKMVKM 166 Query: 183 AA 184 Sbjct: 167 IG 168 >UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolbachia RepID=B3CMS2_WOLPP Length = 234 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 25/183 (13%) Query: 6 IVVDLETTGLDYD-TALPVEVGLL----NVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D ETTGLD +E+G + + TG++ + ++ E+ + +I+G Sbjct: 8 IVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFH--RYLNPERDIPYH--SFKIHGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 E L + + E D++ + N FD + +M L G Sbjct: 64 SEEFLEDK----PLFSDVALEFLDFISNDILVIHNAEFDVKFL-------NMELGKLNAG 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + R+ D A K P L+A+ +R + + R H A+ DA A + Sbjct: 113 LISSDRVLDTLPLARKKFVGSP---ASLNALCKRFDISLEGRELHGALVDAQLLAKVYVE 169 Query: 179 LRH 181 L Sbjct: 170 LTG 172 >UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7J6_HYDS0 Length = 196 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 25/180 (13%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGE-SLYFVPHITVEQLAAADPKAM-EINGYYE 62 +V+D+ETTGL+ D +E+ V+ + F I P+ + EI G Sbjct: 12 YVVLDIETTGLNPDEHEIIEIFAFLVEKERITKQFHRLINPGFFI---PRRITEITGIT- 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 + + + + ++++ G N FD + +++ Y + + Sbjct: 68 ---NAMLVGQPKVEGIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNSPNICT 124 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + +L +Y L AVA+ + H A DA T F+ L Sbjct: 125 LELSKKLIPNLKSYK-------------LSAVADYFNIKYERLHRAKDDALLTYNIFNKL 171 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 80.7 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 18/181 (9%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEIN 58 M + +++DLETTG +++G++ ++ G+ + F E+ P ++ Sbjct: 1 MKDRFVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDRFSSFFNPER--DIPPFVQQLT 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 E+ + A +V D L+ + F N +FD + + +P Sbjct: 59 NITEQMVADA----PSFAEEAAKVADMLQQSYFVAHNVSFDLQFLQEELHMAGLPPFSG- 113 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + ++ E L +A++L + H A DA TA F Sbjct: 114 ---------PTIDTVELARIVFPTAESYKLGDLAKQLHIDHDQPHQADSDAEVTAKLFIA 164 Query: 179 L 179 L Sbjct: 165 L 165 >UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S1A9_FINM2 Length = 1421 Score = 80.7 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 18/176 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYY 61 ++ +V D+ETTGL T E+G + + + + F I E P+ + Sbjct: 400 REFVVFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLINPEIPI---PEKITELTSI 456 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++ + E ++ T N FD + + + + Sbjct: 457 TNEMVKDM---PKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGI--------- 504 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + A + + LD + ++ V + N H A DA AT F Sbjct: 505 --NPVRTYIDTLAFARALEPHLKNHKLDTLTKKYNVNLFNHHRACDDARATGEVFI 558 >UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q2F7_CATAD Length = 204 Score = 80.7 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 57/172 (33%), Gaps = 16/172 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ET+G A +EV +++VD + + A ++G Sbjct: 12 YAVVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQGGV--GATRVHGITRE- 68 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + E+ L N AFD+ + Q + Sbjct: 69 ---MVEPAPRFEDVGMELHGLLVDRVVVAHNLAFDAKFLVTQFARLGVHS---------- 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 +A A + P L E +GV + + HSA+GDA ATA Sbjct: 116 PEIAGGACTLRTSQAMLPGPSYKLLDCCEAVGVELTDAHSALGDALATARLL 167 >UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHD8_9FIRM Length = 269 Score = 80.7 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 16/175 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 + I+ D ETTG + + + ++ GE + + P+A+ ++ G Sbjct: 77 RYIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSIPQAVCDLTGIT 136 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + D++ + N FD + ++ + T Sbjct: 137 DDMVADKC----GICSVLSDFLDFIGDSVLVAHNAEFDLAFL-------NIKLNWYTQTE 185 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 +++ + Y G+ LD + V RH+A+GD+ TA F Sbjct: 186 IYNPVIDT---YKLGRALYPQLLSHDLDTLIRHHRVKERPRHTALGDSLMTAEIF 237 >UniRef50_A0KJY7 DNA polymerase III, epsilon subunit n=2 Tax=Aeromonas RepID=A0KJY7_AERHH Length = 208 Score = 80.7 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP-HITVEQLAAADPKAMEINGY 60 A + + +D ETT LD A V +G + + L I V+ A+ ++ I+G Sbjct: 28 ADEWVALDFETTSLDPAQAEIVAIGAVRIQGNRVLTGEALSIRVQAPASLSEHSVVIHGL 87 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA---RQRVTYSMPFSPL 117 + L + E + ++ G + A+D I+ ++ ++ + Sbjct: 88 RHQDLQQGMTLEAALRLLLA----FIGPRELVGYHIAYDLRILNLACQRCWGLTLAQRGI 143 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 V R++H L + D L A++ +G+P + H A+ DA A F Sbjct: 144 EVSRLYHDHL--------YRRYPDAAIDLHLAAISSHIGLPTLPAHDALSDAITAALIFL 195 Query: 178 MLRH 181 L Sbjct: 196 RLTR 199 >UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rickettsia RepID=DPO3E_RICBR Length = 229 Score = 80.7 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 65/189 (34%), Gaps = 22/189 (11%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLL----NVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 I++D ETTGLD VE+G + V TG +F + + +A I+G Sbjct: 7 IILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPF----EAYRIHGI 62 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + L + +++ + N FD + + S L Sbjct: 63 SGEFLKDKPLFHTIAD----DFLEFIADSKLVIHNAPFDVKFLNHEL-------SLLKRA 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + L ++ P LDA+ +R V R H A+ DAA A + Sbjct: 112 EIKLLELEHAIDTLVMARSMFPGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVE 171 Query: 179 LRHTAAAHL 187 L + Sbjct: 172 LTGGRQSAF 180 >UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15TC4_PSEA6 Length = 769 Score = 80.7 bits (197), Expect = 3e-14, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 26/184 (14%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VVD+ETTG E+G + V + V+ ++ + + Sbjct: 602 QPYVVVDVETTGGCKPGHRITEIGAVKVIDSK--------VVDSWSSLINPERRVPHFIT 653 Query: 63 R--GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY--SMPFSPL 117 R G+ + + + +++ +++ F N FD + + L Sbjct: 654 RLTGISNDMVEDAPLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAFSMPKL 713 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 R +Y+ GKL ++ G+ + N H A+ DA A A Sbjct: 714 CTVREMRKYYPGSPSYSLGKL-------------SKEYGLSLDNHHRALCDAQAAAELLI 760 Query: 178 MLRH 181 M+ Sbjct: 761 MVNE 764 >UniRef50_Q1NJL0 DNA polymerase III, epsilon subunit n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJL0_9DELT Length = 238 Score = 80.3 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 6/178 (3%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYER 63 +V D E TGLD V +G + ++ + + + A P + I+ Sbjct: 40 FVVFDTELTGLDRRRDEIVSIGAVRINNLRIMVGDTFYVQVKPSQALPKDSTLIHRLTPH 99 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMPFSPLTVGRV 122 L A D+ + G D V R + Y S + + Sbjct: 100 QLSDA----PPLATVLPGFIDYCGQSLLVGHFVGLDVAFVNRACLRYYGARLSNPCLDTM 155 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L A+ + G+P H+A DA TA+ F L Sbjct: 156 HLAQTHTEMQWQQYHDRFRMDISYNLAALGAKYGLPAFTHHNAYEDALQTAYLFIYLV 213 >UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alphaproteobacteria RepID=B5ZV55_RHILW Length = 245 Score = 80.3 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQ-LAAADPKAMEINGYYERG 64 I+ D ETTGLD +E+G + + V HI + P A+ ++G + Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGITDEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A E+ + + N FD + + +P + Sbjct: 64 LKDKK----PFAEVAEEILTFFGDAKWIAHNATFDMGFINAELARIGLP-------PILP 112 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R+ D + A K + P LDA+ R G+ +R H A+ D+ A + + Sbjct: 113 ERVLDTLSMARRKHPMGPN---SLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGG 169 Query: 183 AAAHL 187 A Sbjct: 170 RQAAF 174 >UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEU3_ACHLI Length = 1504 Score = 80.3 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 58/181 (32%), Gaps = 17/181 (9%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTG-ESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 V D+ETTG + +E+ V G + F I E+ I + + Sbjct: 414 VFDIETTGFSFTRDKIIEIAAYKVRGGFIAERFEVLINPEE--QLSETTKRITNITDEMV 471 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV--- 122 E E+ ++++G N +FD + + + P V Sbjct: 472 ENEKTIEE----VLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLNI 527 Query: 123 -------WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + Y NI + L A+ + V + H AI DA ATA Sbjct: 528 ARYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEAHHRAIYDAYATAEV 587 Query: 176 F 176 F Sbjct: 588 F 588 >UniRef50_P96171 DNA for Na+/glucose symporter, n=1 Tax=Vibrio parahaemolyticus RepID=P96171_VIBPA Length = 234 Score = 79.9 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 70/178 (39%), Gaps = 12/178 (6%) Query: 2 AKQL--IVVDLETTGLDYDTALPVEVGLLNVDTGE-SLYFVPHITVEQLAAADPKAMEIN 58 A++L +V+D ETTG + + + +G + + L H+ + ++++++ Sbjct: 43 ARELDTLVLDFETTGFNPEVDRVISIGWVEIRNSNIRLNSARHVFINHAIDICHESVKVH 102 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 L+ ++EQ A+ ++ D + G + + + M + L Sbjct: 103 HIRPETLHVSGISEQ---AAFTQLLDVIAGKILVAHGCIMEQRFLEQYIK---MKYQNLK 156 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + +W L L L ++ + L +P H+A+ DA ATA + Sbjct: 157 LPLIW---LDTLKIEQYRTQLRPTRSDWRLSSIRKELNLPTYQAHNALNDAIATAELY 211 >UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=10 Tax=Clostridium RepID=A5I1F6_CLOBH Length = 855 Score = 79.9 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 69/170 (40%), Gaps = 17/170 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY--FVPHITVEQLAAADPKAMEINGYYE 62 ++V D+E+TG++ V++ + ++ + F +T ++ + ++G+ + Sbjct: 495 VVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTPKKFVG---DSYLVHGFSD 551 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L ++ V + ++++ G N AFD +I+ + S+ + Sbjct: 552 QFLKENGENKK---VVLKDFLEFIKDTVIVGHNVAFDISILNSELERLSLEKASFKT--- 605 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 ++ D+A L L+ +++ + H A+ D AT Sbjct: 606 -YYDTLDIARRFYPNLTNHK-----LETLSKLFNTETKSSHDAMDDILAT 649 >UniRef50_C0WGE7 Possible exonuclease n=2 Tax=Corynebacterium RepID=C0WGE7_9CORY Length = 1118 Score = 79.9 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 16/179 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +K+ VVD ETTG T +E+G++ +D + T+ Q P N + Sbjct: 4 SKRYAVVDFETTGFG-STDRVIEIGVVLLDHNREVEST-WETLVQPQRDIP-----NSFV 56 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + + GE + L G T N F+ + R+ + + Sbjct: 57 HRITPTDVVDAPLFGEVAGEFFELLNGRTVVAHNAPFEVRFLQREFSNLGVAWPNYGAWV 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V RL P E L+ E +G+ HSA+ DA ATA F L Sbjct: 117 VDTKRLFQQ---------TYPGEGTTLEHALEVVGITNARPHSALADALATAELFAQLV 166 >UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIX0_KOSOT Length = 185 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 60/178 (33%), Gaps = 17/178 (9%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-IN 58 M K +V+D ETTG +E+ + + G+ + ++ P + I+ Sbjct: 1 MNKVYVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIRIPAYISGIH 60 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + +E + + +++L G + D + + + Sbjct: 61 GL----KNEDVTSEPTISDVFPRFKEYLGNAIIVGHSIEVDMKF-------FDIACKEIG 109 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + + + L ++ L +A+RL + H A+ DA T F Sbjct: 110 TFPLSNQYIDTLKIAK----DLFKEGSYSLAELAKRLKIKDAPTHRALDDARVTGKVF 163 >UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0P1Y1_9CLOT Length = 235 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 26/183 (14%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGE-----SLYFVPHITVEQLAAADPKAMEI 57 K + DLETTGL D+ +E+G + + G+ + P I V + + Sbjct: 2 KDYVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGKYNCIIHPEIEVSDFI------INL 55 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G R + R+ + ++ E ++ G N FD + ++ PF Sbjct: 56 TGIS-RDMLRKGIPLKE---GVEEFLEFSGDLPILGHNVMFDYKFMKMAAASFKYPFEKT 111 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 V + + + E + L+ + H A DA ATA F+ Sbjct: 112 GVDTLK-----------VARKLLTGLENKKLETLCAHYHYVNQAAHRAYDDALATAVVFE 160 Query: 178 MLR 180 ++ Sbjct: 161 QMK 163 >UniRef50_Q1QDN3 Exonuclease n=3 Tax=Psychrobacter RepID=Q1QDN3_PSYCK Length = 203 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 67/188 (35%), Gaps = 27/188 (14%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLL-----NVDTGESLYFV--PHITVEQLAAADPKAM 55 +Q + +D E TGL+ + V + +DTG L+ + P + E + Sbjct: 33 EQWVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPPVMPE------GDTI 86 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVA---RQRVTYSM 112 I+G + G + ++ G P D + + + + Sbjct: 87 VIHGLRTADVEHAM----SYDEMLGLLLPFISNRPLVGFCPQIDVGFLNPLVKHYMGTHL 142 Query: 113 PFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 P + + ++ R+ G+ ++ + L+++ +P + H A DA T Sbjct: 143 PNEIIDIRPLYSRRMM-------GRSQGLSSQAQHLNSILAHYNIPELGTHDAYNDAIMT 195 Query: 173 AFCFDMLR 180 A F +R Sbjct: 196 AMAFLHMR 203 >UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function n=3 Tax=Proteobacteria RepID=Q3IIS2_PSEHT Length = 237 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 14/184 (7%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG+D +E+G + + H+ + ++ +A++++G Sbjct: 1 MARRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRNSEEEAIDVHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + L Q E D+++G N FD + + + + Sbjct: 61 ITNEFLRDKPLFHQIA----QEFFDYIKGAELVIHNAPFDIGHMDNEFSLLNQGYPKTAT 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 ++ D A ++ P + LDA+ R V R H A+ D+ A + Sbjct: 117 FC----QVLDTLKMA---RDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYL 169 Query: 178 MLRH 181 + Sbjct: 170 AMTG 173 >UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SPM0_9CAUL Length = 717 Score = 79.5 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 16/177 (9%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGLY 66 VVD+ETTG E+G + + GE + + P E+ G Sbjct: 547 VVDIETTGGQSANERVTEIGAVKIRNGEIID-TWQSLINPERRIPPFITELTGIS----N 601 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + A + +L+G F N FD ++ + PF + + Sbjct: 602 AMVRDAPRFADIADDFDAFLKGTVFVAHNVNFDYGFLSAEYRRLERPFR--------YPK 653 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + +A+ + + GL ++ G+ + N H A+ DA A A ++ Sbjct: 654 MCTVASM---RRHFPGLAAYGLGPLSREFGIELKNHHRALSDAMAAAELLKLINERR 707 >UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WPW0_EGGLE Length = 966 Score = 79.5 bits (194), Expect = 6e-14, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 20/182 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYER 63 ++V+D ETTG ++ ++ ++ GE + + IT P+ + + ++R Sbjct: 10 VVVLDTETTGFSFNHDELTQIAAARMEQGEIVEW--FITFVNPGKPIPEDVAHLTDIHDR 67 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + L A A ++ +++ N FD T R Y + + W Sbjct: 68 DVADAPLP----ADALAKLVEFIGDAKVVAHNAEFDRTFTTRHPSGYPL------LENTW 117 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + + ++ + + L + G P+ H A D AT F +L Sbjct: 118 ------IDSLDLARIALPRMKSHRLLDLVRAFGAPLST-HRADADVEATCAIFRILLAGV 170 Query: 184 AA 185 AA Sbjct: 171 AA 172 >UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bacteroidetes RepID=A6EU25_9BACT Length = 472 Score = 79.5 bits (194), Expect = 6e-14, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 23/181 (12%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGY 60 ++ V+D+ETTG E+ ++ V+ E + I E A+ G Sbjct: 5 TEKFTVIDVETTG-GVGQGRMTEICIITVENMEIVDVWSSLINPEIYIPQHITAL--TGI 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR--VTYSMPFSPLT 118 ++ + + +++ R F N FD + ++ + S L Sbjct: 62 TDQMVTDA----PRFCDVAAIIEEKTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKKLC 117 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 R+ + L +Y+ L + +G+ +++ H A D AT F Sbjct: 118 TVRLSRKLIPGLPSYS-------------LSKLCRSIGISLLDAHRAEADTRATTTLFLQ 164 Query: 179 L 179 L Sbjct: 165 L 165 >UniRef50_A6CHW6 DNA polymerase III, alpha subunit n=1 Tax=Bacillus sp. SG-1 RepID=A6CHW6_9BACI Length = 245 Score = 79.5 bits (194), Expect = 6e-14, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 17/178 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGYY 61 + DLETTG + V +G + + + L V L + G Sbjct: 62 TFTIFDLETTGFFPEIGDEIVSIGAIKMQGNKILDQKTFYEVINPLQNVSLETKRFTGL- 120 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 R + +A T V + ++ +G +FD + ++ + +P Sbjct: 121 RRTDFIKAKTLP---VGLKDFLEFCKGTILVAHPASFDINFLQKRIRKWDLPSFEPEY-- 175 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + +YA K ++ + LD + ++ + RH A+ DA TA F L Sbjct: 176 --------IDSYALAKELLNEQKCY-LDDLVKKFQISEKTRHHALNDAIMTAEVFQEL 224 >UniRef50_C8X5R2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5R2_DESRD Length = 233 Score = 79.5 bits (194), Expect = 6e-14, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 6/178 (3%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V+D E TGL + +G + ++ T A I+ + Sbjct: 36 FCVLDTELTGL-RRRHEIISIGAVRIEHLALKPLDRFYTEVCPKAWTKTGTLIHRISPQQ 94 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-SMPFSPLTVGRVW 123 + E+ +L + G N A D + + + P + + Sbjct: 95 CQDA----PKIGKVLPELIAYLGTSLLIGHNIALDLQFLQKACKKHLGHPLVHPCIDTLR 150 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 R+ + + + + L +A+ G+P H+A DA TA+ F L H Sbjct: 151 LARVYEESRWESYYDRFTLRVSYQLQELAQAYGLPCFPAHNAASDALQTAYLFVYLVH 208 >UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=Q65S83_MANSM Length = 260 Score = 79.1 bits (193), Expect = 7e-14, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 76/187 (40%), Gaps = 27/187 (14%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLL----NVDTGESLYFVPHITVEQLAAADPKAME 56 I++D ETTG++ Y+ +E+G + TG L+ +I ++L DP+A++ Sbjct: 11 ILLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHL--YIKPDRLV--DPEAIK 66 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 ++G + L + E D+++G N FD + + + + Sbjct: 67 VHGITDEMLEDK----PVFTEVAQEFIDFIKGAELLIHNAPFDVGFMDYEFRKHHIDVKT 122 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAF 174 + V D A + P + LDA+ +RLG+ R H A+ DA Sbjct: 123 ADICSV-----TDTLQLA---RQMYPGKRNSLDALCDRLGIDNTKRVLHGALLDAEILGD 174 Query: 175 CFDMLRH 181 + ++ Sbjct: 175 VYLVMTG 181 >UniRef50_C8P6J0 Putative uncharacterized protein n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P6J0_9LACO Length = 224 Score = 79.1 bits (193), Expect = 8e-14, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 66/180 (36%), Gaps = 13/180 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +DLET+GL+ TA + +G + G + F + ++ + G + Sbjct: 55 FVSLDLETSGLNPTTAQIISIGAVKRIAGHTTTFYRLVKLQSGKKLAGDIARLTGLNSQQ 114 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E + A ++Q + + G N FD + + + ++ Sbjct: 115 LATEGVA---VKEALIDLQSFAKKLPIVGYNLLFDERFLQTAVIRAGIVQ--------FN 163 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 +++ D+ Y K + L + R G+ H+++ DA AT D L Sbjct: 164 NKMVDVLPYV--KTVDKFCDNYHLATILTRYGIKNEQAHNSLADATATMKLVDKLIKIHG 221 >UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI99_EUBR3 Length = 245 Score = 79.1 bits (193), Expect = 8e-14, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 24/181 (13%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 K V+DLE TGL +E+G V GE + + T+ P+ + E+ G Sbjct: 8 KNYTVIDLEMTGLSAKNDKIIEIGAARVRGGEIVDTI--STLVNPKQHIPQRVQELTGIT 65 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A A + +++ + G N FD + + + V Sbjct: 66 DSDVENAA----DMDEAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVN------------ 109 Query: 122 VWHHRLADLAAYAAGKLN---IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 H R L AY K+ + + + L+ + E GV N H A+ DA T F+ Sbjct: 110 --HKRTLSLNAYDTLKIARKCLPAEQSKKLEDLCEYFGVSRKNAHRALDDAIETKQIFEK 167 Query: 179 L 179 L Sbjct: 168 L 168 >UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU82_9GAMM Length = 528 Score = 78.7 bits (192), Expect = 8e-14, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 18/177 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 ++++++DLETTG +E+GLL ++ G+ L + + E + P ++ G Sbjct: 22 EKMVLLDLETTGGKATHHRIIEIGLLVIEQGKVLERWQSFVDPETV--LPPFIQKLTGIA 79 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + +L T N FD + + + ++ + Sbjct: 80 PSML----RGAPLFSEVAETLLTYLNDRTLVAHNARFDYGFLKNEFQRIGISYNAKPLCS 135 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 V R + GLD + +R +P+ NRH A+ DA F Sbjct: 136 VKFSRSL-----------YPQFKRHGLDQIIKRFQLPIENRHRALDDAEMIQRFFLK 181 >UniRef50_C0ECE2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECE2_9CLOT Length = 865 Score = 78.7 bits (192), Expect = 8e-14, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 18/186 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVD-TGESLYFVPHITVEQLAAADPKAMEINGYY 61 K ++V D+E+TG D + +++ + +D TG L + + ++ ++ + Sbjct: 497 KNVVVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRS--FEQLLHPSKPVGQSEAVHHFS 554 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L Q E ++RG G N FD TI+A + +P + Sbjct: 555 DALLAERGGEPPQV---LAEFCSFVRGAVVVGHNVGFDLTILASELSRLGLPPAEYEE-- 609 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++ DLA L L+ +++ L V + H A+ D AT D+L H Sbjct: 610 --YYDTLDLARRFYPDL-----PNHKLETLSKLLDTEVKSSHDAMDDILATK---DVLLH 659 Query: 182 TAAAHL 187 A L Sbjct: 660 LTAHKL 665 >UniRef50_C2D7T6 3'-5' exonuclease and CRISPR-associated Cas2 family protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7T6_9ACTN Length = 337 Score = 78.7 bits (192), Expect = 8e-14, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 20/183 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ +++D+ET+GL+ +E+G + + + + I + L P ++ G + Sbjct: 168 KKFVILDIETSGLNETDDKIIEIGAIRICDKQVDDYQCLIKRDSL-NLSPAITQLTGLTD 226 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYS---MPFSPLTV 119 L + + ++ G N AFD + + + + + + V Sbjct: 227 IELANRGVNPNLALNGLKQ---FIGHLPVLGYNIAFDMRFINNELRSMNEELLDNREIDV 283 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R L +YA LD V + G+ H A+GDA A + Sbjct: 284 MRFIKKEKMFLESYA-------------LDNVLKVYGISATVPHRALGDAKLIAKLALKV 330 Query: 180 RHT 182 Sbjct: 331 NKI 333 >UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caulobacteraceae RepID=B4W5N5_9CAUL Length = 241 Score = 78.7 bits (192), Expect = 8e-14, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 22/186 (11%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVD--TGESLYFVPHITVEQLAAADPKAMEI 57 MA++ IV+D ETTG D +EVG + + F + E+L P A+ + Sbjct: 1 MARE-IVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPERLIP--PDAIRV 57 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + + ++ +++ N FD + Y + P+ Sbjct: 58 HGITD----DKVKDAPKFHEIADDLIEFIGDAPMIAHNAGFDRNFID---FEYKLCGRPI 110 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFC 175 T W D A + P LDA+ +R V +V R H A+ DA A Sbjct: 111 TGETRW----IDTLKLAQARF---PGMPNSLDALCKRFKVSLVERTLHGALIDARLLAEV 163 Query: 176 FDMLRH 181 + LR Sbjct: 164 YLELRG 169 >UniRef50_C6P477 DNA polymerase III, epsilon subunit n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P477_9PROT Length = 235 Score = 78.7 bits (192), Expect = 8e-14, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 15/177 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGE-SLYFVPHITVEQLAAADPKAMEINGYYE 62 +++VVD+ETTGL+ T + +G + V G +L + ++Q ++D + + ++G Sbjct: 42 RVVVVDVETTGLNLITDTLISIGAVAVVNGRIALGDSFSVVLKQQESSDKENILVHGISS 101 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 R+ + A ++L + + AFD T++ R Y +G Sbjct: 102 TA-QRDGVDP---VEALLTFLEYLGKSRLIAFHVAFDETMIRRAMRQY--------LGLS 149 Query: 123 WHHRLADLAAYAAGKLNIDPTELEG-LDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + H DL AY LN E LD R + + RH+A+ DA ATA F + Sbjct: 150 FKHEWLDL-AYVMPALNRSLMENHRVLDDWIGRFNIHIEARHNALADALATAQLFQI 205 >UniRef50_C3XF27 DNA polymerase III subunit epsilon n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XF27_9HELI Length = 268 Score = 78.7 bits (192), Expect = 9e-14, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 19/176 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +L VD+ETT +E+G + GE L + D + Sbjct: 79 KLCFVDIETTSASVKNGQIIEIGAIIAQNGEILDTFDTLVYSPFVPEDIIDLT------- 131 Query: 64 GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 G+ L + + + + +L + F N +FD +A Y MP + Sbjct: 132 GIDSYMLEDAPRLEQVLKQFRAFLGDSVFVAHNVSFDYNFIAESLHEYDMP-------PL 184 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 ++ RL L ++ L + + LG+ H A DA +++ Sbjct: 185 FNPRLCTLDL----SRRTIVSKKYALAYLNDMLGINTAQAHRAYADALTAFRLYEI 236 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 78.7 bits (192), Expect = 9e-14, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 18/170 (10%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D+ETTG + +EV + + G + + P+ ++ + Sbjct: 4 RSFVAIDVETTGTSPEHDRLIEVAAVRFEDGREIGC--FSRLIDPGCPVPQRIQ----HL 57 Query: 63 RGLYREALT-EQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 G++ L + + ++ +L N FD + Sbjct: 58 TGIHPAMLAGKPRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSL------P 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 W + A+LA ++ + L +AE LG+P+ + H A DA A Sbjct: 112 NWSYDTAELA-----RVALPLARNHRLATLAELLGLPLEHHHRAEDDARA 156 >UniRef50_D1XX28 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1XX28_9BACT Length = 894 Score = 78.7 bits (192), Expect = 1e-13, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 13/179 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVD----TGESLYFVPHITVEQLAAADPKAMEIN 58 ++++V D ETTGLD T +E+ + + GE L + L K + Sbjct: 510 QEIVVFDTETTGLDVFTDDIIEISAIKIKEGKIVGEPLDLYIYTDKPILQKLGTKENPLY 569 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 Y + L L + A + +++ +T G N +D I+ Y Sbjct: 570 EIYHKKLASGEL--LKANDALNKFIEFVDNSTLIGHNINYDYHILDNCLKRY-------A 620 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + +H + +L L+ + ER + +N H +I D AT + Sbjct: 621 NDCMDNHSYKYFDSLKLIRLLEPSLRSYKLEYLLERFQLEGINSHQSIDDVKATISLIN 679 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 78.7 bits (192), Expect = 1e-13, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 19/182 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAM-EINGYY 61 + I+VDLETTGLD + A +E+G L V GE + F + E+ P + + G Sbjct: 2 EWIIVDLETTGLDPERAEILEIGALRVRGGEIVDTFHTLVRPERPI---PDEITRLTGLS 58 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + AG + F+ + + + Y +P P Sbjct: 59 D----ADVAGAPSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQPGD--- 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + ++ L+ +A RL + H A+ DA L Sbjct: 112 -------GLCTLSLARILAPRLMSHRLEYLARRLRLRAEVSHRALADARTAHQLLMRLEE 164 Query: 182 TA 183 A Sbjct: 165 KA 166 >UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0N2_9BACE Length = 1390 Score = 78.7 bits (192), Expect = 1e-13, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 22/179 (12%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 +++ D+ETTGLD + +E+G + + GE F ++ + + + +E+ Sbjct: 366 TGEVVCFDIETTGLDNRRDVIIEIGAVILRNGEIAETFDTFVSPGRPLSR--EIVELTSI 423 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP--LT 118 ++ L A ++ A N FD +A Y +PF + Sbjct: 424 TDKMLEGA----PSQEEAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTSID 479 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L DL Y LD VAE L +P H A DA A+ Sbjct: 480 TLILAQNLLPDLGKYK-------------LDIVAEHLRLPPFKHHRADADAGMVAYMLV 525 >UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A497_GEMAT Length = 214 Score = 78.4 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 18/185 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 VVD+ETTG E+ ++ V G+ + + E+ ++ Sbjct: 5 PFAVVDVETTGTRAAGGDRITEIAIVQVQGGQVGEVYSQLVNPERPIPPYITSLT----- 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + V D LRG+ F N FD V+ + + Sbjct: 60 -HITWDMVRDQPTFREITSNVLDRLRGSIFVAHNAPFDWRFVSEEV-------RRGSGQE 111 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + RL + + + LD V G+ + RH A GDA ATA + + Sbjct: 112 LSGPRLCTV---RFARAALPQLSRRSLDHVTRYFGIEIAARHRAAGDALATAHALCRMLN 168 Query: 182 TAAAH 186 A+ H Sbjct: 169 IASEH 173 >UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WWQ3_ALIAD Length = 240 Score = 78.4 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 58/178 (32%), Gaps = 22/178 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +VVD ETTGL + VE+ L+ V V V+ P+A ++ Sbjct: 4 QEARFVVVDTETTGLPPEG-RVVELALVEVGLECEPQIVYSALVDPGCPIPPEASAVHHI 62 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 +R + + + + W +V ++ N FD ++ S Sbjct: 63 TDRDVAGK----PRLSQVWPKVLGYIGDAILVAHNAEFDRGMLPE--TGRPWICSKRLAQ 116 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 +W L ID V V H A+GDA TA F Sbjct: 117 HLWRDAPKHSNQVLRYWLGID---------------VEVGQPHRALGDAIVTAHVFQR 159 >UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Proteobacteria RepID=DPO3E_SALTI Length = 243 Score = 78.4 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 22/185 (11%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESL--YFVPHITVEQLAAADPKAMEIN 58 IV+D ETTG++ Y+ +E+G + V F ++ ++L DP+A ++ Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLV--DPEAFGVH 66 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + L L + A E D++RG N +FD + + Sbjct: 67 GIADEFL----LDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTN 122 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCF 176 ++ D A A + P + LDA+ R + R H A+ DA A + Sbjct: 123 TFC----KVTDSLALA---RKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVY 175 Query: 177 DMLRH 181 + Sbjct: 176 LAMTG 180 >UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA Length = 307 Score = 78.0 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 40/186 (21%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE-- 62 V+D ETTGL +E+G+L V E + +QL ++E++G+ Sbjct: 22 YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVD-----RYDQLIK---PSIEVDGFITAL 73 Query: 63 RGLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY-------SMPF 114 G+ + L + + +V ++ + G N +FD + +M F Sbjct: 74 TGITNDMLEDMPSISSVKNDVLSFISEDIILGHNTSFDMRFLNEGFKEQLSNQYMDTMQF 133 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + HHRL+DL Y LG+ N H A+ D AT Sbjct: 134 ARKLYPELKHHRLSDLTDY---------------------LGLHN-NEHRALADCIATKE 171 Query: 175 CFDMLR 180 +D ++ Sbjct: 172 LYDAVK 177 >UniRef50_Q8D3D2 DnaQ protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3D2_WIGBR Length = 246 Score = 78.0 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 78/189 (41%), Gaps = 22/189 (11%) Query: 2 AKQLIVVDLETTGLD-----YDTALPVEVGLLNVDTGE--SLYFVPHITVEQLAAADPKA 54 ++ IV+D ETTG++ Y +E+G + + F ++ ++L +A Sbjct: 5 TERQIVLDTETTGMNKNGPHYYGHRIIEIGAIEMINRRLTGRCFHTYLKPDRLVEI--EA 62 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 +I+G + L+ + + ++++G+ N FD + + + Sbjct: 63 FKIHGISDEFLFFQ----PTFEEIMEKFINFIKGSELIIHNSVFDIGFINNEIQLCNKNL 118 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAAT 172 + + ++ + D A NI P + LDA+++R G+ R H A+ DA Sbjct: 119 NNIN----YYCSVIDTLKLA---RNIFPGKRNNLDALSDRYGIDTTKRILHGALLDAEIL 171 Query: 173 AFCFDMLRH 181 + + ++ Sbjct: 172 SNVYLLMTG 180 >UniRef50_B1VHF1 Putative exonuclease n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VHF1_CORU7 Length = 270 Score = 78.0 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 5/180 (2%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLETTGL+ T +E+ +L V+ G S+ H + + ++ ING + Sbjct: 90 RCAVVDLETTGLEPATDRVIEIAVLTVEHG-SIVGSFHCLLNPECSIPGESSNINGLRDD 148 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A E+ + T G N FD +A + + + Sbjct: 149 DVANS----PTFAEVAQELLPHVLNRTLVGHNVKFDVGFLAAEYARLGHADAARVLTEQC 204 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + AA A + + L +A G+ H A DAA T L A Sbjct: 205 LPQALCTAATARELIPREAVGRYTLANLAAHCGLASSPAHRAQQDAATTFDLTHRLYTIA 264 >UniRef50_D1B3F1 DNA polymerase III, epsilon subunit n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3F1_SULD5 Length = 260 Score = 78.0 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 19/174 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYYE 62 + +VD+E G +E+G + V+ G+ V + P+++ ++ G Sbjct: 70 KFCIVDIEANGSKPALDAIIEIGAVMVEKGK---IVGEFSSLAKTDVLPESIVQLTGITL 126 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + +++ F N FD ++ G + Sbjct: 127 EELSFA----PSLNSVLEGFRLFIKDAVFVAHNVNFDYYFISHSLEMAGF-------GPL 175 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + RL + GL A+AE LG+ N H A+ DA AT Sbjct: 176 LNRRLDTIDL----ARKCIEAPKYGLSALAEHLGITFENHHRALYDAKATTEVL 225 >UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cellular organisms RepID=Q1LGD6_RALME Length = 530 Score = 78.0 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 17/185 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ VDLETTG D E+G++ V + V+ L + P + G + Sbjct: 33 RPIVFVDLETTGADAQRDRITEIGVVEVGPDGIQEW--DTLVDPLTSIPPFVQGLTGITD 90 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A+ + + L+G F N FD + + + F Sbjct: 91 E----MVRGQPTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTF-------- 138 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R L + E GLDA+ R G+ RH A+ DA + + Sbjct: 139 ---RADVLCTLRLSRSLFPSVERHGLDALIARFGLTPKGRHRALADAELLWQFWQKIHEI 195 Query: 183 AAAHL 187 + L Sbjct: 196 YSVDL 200 >UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlamydiaceae RepID=B0B7H7_CHLT2 Length = 232 Score = 78.0 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 58/181 (32%), Gaps = 20/181 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 LI D ETTG D VE+ N T ES F + E A +A +I+G Sbjct: 2 PALIFYDTETTGTQIDKDRIVELAAYNGTTSES--FQTLVNPEIPIPA--EATKIHGITT 57 Query: 63 RGLYREALTEQQTAVAWGEVQDWLR-GNTFAGS-NPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A+ + ++ N N AFD ++ R+ + Sbjct: 58 AEVADA----PRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRRHG--------- 104 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + +L + + K L + + G H A+ D F L Sbjct: 105 -LSEPQLRTIDSLKWAKKYRTDLPQHSLQYLRQVYGFEENQAHRALDDVITLYRVFSALV 163 Query: 181 H 181 Sbjct: 164 G 164 >UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSB2_CHLT3 Length = 578 Score = 78.0 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 21/179 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG +E+ + G+ + L + +I+ + + Sbjct: 23 TFAVVDLETTGGLKPENRIIEICAIKCRNGQEVGM--------LESLVNPEQQISYFISQ 74 Query: 64 --GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 G+ + +V ++ + F N FD + + + Sbjct: 75 YTGITNSMVDNAPVIQSLLTKVSEFFQETIFVAHNVPFDMGFINMELERNGY----AKLT 130 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 W L + + + + + L +A+ G+ V NRH A GD AT L Sbjct: 131 NRW------LCTFRLARRLLPTQQKKNLGDLAKYFGIIVENRHRARGDCEATIKLLAEL 183 >UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY86_DICNV Length = 233 Score = 78.0 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 33/196 (16%) Query: 1 MAKQLIVVDLETTGLDYD------TALPVEVGLLNV--DTGESLYFVPHITVEQLAAADP 52 M+ + ++ D ETTG++++ +E+G + + YF ++ EQ DP Sbjct: 1 MSFRSVIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPEQPV--DP 58 Query: 53 KAMEINGYYERGL-----YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR 107 +A +++G + L +++ L E + +A + N AFD + R+ Sbjct: 59 QAFKVHGISDEFLADKPFFKDVLPEFEAYLASAD--------ELVAHNIAFDRQFIDREL 110 Query: 108 VTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSA 165 + + +A + N LDA+ +R GV R H A Sbjct: 111 QLAGCDYRLGDKFTLVDSLKIAREKFAGARNN--------LDALCKRFGVDNTGRELHGA 162 Query: 166 IGDAAATAFCFDMLRH 181 + DA A + L Sbjct: 163 LLDAQLLAEVYLKLTG 178 >UniRef50_B3R0A4 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0A4_PHYMT Length = 1522 Score = 77.6 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 20/179 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI--NGYY 61 + +V D+ETTG +E+ + I ++Q + +++ N Y Sbjct: 415 EYVVFDIETTGFSKVRDKIIEISGFKIKNN--------IVIDQFYSLVNPEIDLPENIYL 466 Query: 62 ERGLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + E L + + +++ N +FD + + + ++ F L V Sbjct: 467 LTKIKNETLKNAPKILQVLPDFLKFIKNTCLVAHNASFDVSFIFEKSKQLNISFPLLPV- 525 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 D A + + + L +A + V + H A DA AT F + Sbjct: 526 -------IDTLALSQYYFS-SFMKFFSLKRLAAKFKVKLEEHHRAKDDAKATTEIFMKI 576 >UniRef50_B6JP45 DNA polymerase III epsilon subunit n=17 Tax=Helicobacter RepID=B6JP45_HELP2 Length = 323 Score = 77.6 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 23/177 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +DLETTG +E+G + V GE T+ ++ + E+ G Sbjct: 109 FSFIDLETTGSCPIKHEILEIGAVQVKGGE--IINRFETLVKVKSVPDYIAELTGI---- 162 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR---VTYSMPFSPLTVGR 121 Y + L A E++ +L + F N FD + R + + L Sbjct: 163 AYEDTLNAPSVHEALQELRLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLD 222 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + L + E LG + H A DA A+ F++ Sbjct: 223 LSKRAILSM--------------RYSLSFLKELLGFGIEVSHRAYADALASYKLFEI 265 >UniRef50_Q5QUI3 3'-5' exonuclease n=1 Tax=Idiomarina loihiensis RepID=Q5QUI3_IDILO Length = 215 Score = 77.6 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 27/187 (14%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDT------GESLYFVPHITVEQLAAADPKA 54 + + + +D+E+TGLD + + +++ + H +L + Sbjct: 23 QSLRYVALDIESTGLDPKKHQILSIAWMSIHPPVMHLGNAQYHVFAHGQELELGQ----S 78 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 I+G + + +Q + + L + D + Y +PF Sbjct: 79 PTIHGLTRQDFLHSSEPKQ----TFAMLSRALNDAVLVCHHKGMDWRFLKHIEAQYGIPF 134 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTE-----LEGLDAVAERLGVPVVNRHSAIGDA 169 PL + D A+ KL +P + L A +R +P + H A+ D Sbjct: 135 KPLAIF--------DTLAFEKHKLERNPHQPIYGGQLALSACRKRYNLPDYHAHHALTDT 186 Query: 170 AATAFCF 176 A A F Sbjct: 187 VACAELF 193 >UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Roseobacter RepID=Q16CY8_ROSDO Length = 228 Score = 77.6 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 21/181 (11%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNV--DTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 IV+D ETTG D + VE+G + + + +I E+ + +A +++G + Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPER--SMPEEAFQVHGLGD 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + A D++ N AFD + + ++P P Sbjct: 62 DFLRDK----PKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELGWINLPKIP------ 111 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLR 180 W + L P LDA+ R G+ +R H A+ D+ A + L Sbjct: 112 WEQAIDTLDI----ARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELI 167 Query: 181 H 181 Sbjct: 168 G 168 >UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Corynebacterium RepID=C2BLZ4_9CORY Length = 221 Score = 77.6 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 14/182 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V+D ETTG + +E+ + D+ +F P + L +P I + Sbjct: 19 PVFAVIDTETTGFNKRYDRIIELAAVRADS----HFNPIDSWHTL--LNPDGKAIKNSHI 72 Query: 63 RGLYREA-LTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 G+ + +T + +G+ ++ G N FDS ++ + + + Sbjct: 73 HGITNDMVVTAPTFSEVYGDFTSYIDGMQLFAHNAPFDSKMIVAEVDRMTGGDNDGDEFF 132 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D A L+ P L A+ +RLG+ + H+A+ DA +T L Sbjct: 133 P----FIDTIDLAKQMLDCGP---YNLPALLDRLGLDNPDAHAAVADATSTVNMLHALFG 185 Query: 182 TA 183 Sbjct: 186 FK 187 >UniRef50_A4U2R7 DNA polymerase III, epsilon subunit n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U2R7_9PROT Length = 459 Score = 77.6 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 63/177 (35%), Gaps = 15/177 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 ++V+D ETTGLD V VG + + P A I+G E Sbjct: 256 PVVVLDTETTGLDAARDAIVSVGAVRCHGSRIYRAAMLDLLVNPGRRIPARATAIHGIDE 315 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + E+ + G FD ++ + ++P Sbjct: 316 SMVAGK----PDLAASLPEIAAIMDKAVVVGHQIGFDLALLRHGTERLGLDWTPP----- 366 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 RL L AA +D A R+GV + RH+A+GDA TA + L Sbjct: 367 --PRLDILLLSAA---LAPDESGHEIDDQAARMGVNISGRHTALGDALVTAELWVRL 418 >UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Neisseria RepID=Q9JYS6_NEIMB Length = 470 Score = 77.6 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 17/168 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLE+TG + EV L+ + G + + ++ + G + Sbjct: 29 PVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFVAGL--TGISD- 85 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 G+ +A A GE+ L+G N FD T + + + FS Sbjct: 86 GMVADA---PVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSS------- 135 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAA 171 L + + LD++ ERLG+ V +RH A+ D +A Sbjct: 136 ----PALCSVQLSRCLYPQFYKHSLDSIIERLGIVVEDRHRAMADVSA 179 >UniRef50_B8G6F9 DNA polymerase III, epsilon subunit n=3 Tax=Chloroflexus RepID=B8G6F9_CHLAD Length = 280 Score = 77.2 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 63/178 (35%), Gaps = 17/178 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 L+ D+ETTGLD + E+ +L + + + + DP+A ++NG Sbjct: 14 PLVFFDVETTGLDLQNGHRICELAMLRREH-RQITGQINTLINPERELDPQASQVNGIRA 72 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + A +V + N FD + + + P + Sbjct: 73 EDLQ----SAPRFAELTVQVVQLSQQAVRVAHNLPFDESFLNMELARAGYP-------PL 121 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L L A +L I L L A+A G+P H A+ D FD L Sbjct: 122 TGPALDTLEL--ARRLGIRRGSL-SLGALATSFGLPTPT-HRAMDDVLTLHALFDRLV 175 >UniRef50_UPI0001B583F7 DNA polymerase III n=2 Tax=Streptomyces RepID=UPI0001B583F7 Length = 612 Score = 77.2 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 62/186 (33%), Gaps = 24/186 (12%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +VD+ET+GL + V ++ + V+ DP ++++G L Sbjct: 21 ALVDVETSGLMARRDRVLSVAVVTMGPDGEQTGEFSTLVDP--GCDPGPVDVHGLTRERL 78 Query: 66 YREALTEQQTAVAWGEVQD----WLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 A A+G++ L+ N FD +A + R Sbjct: 79 --------SGAPAFGQIAGRLGAMLQDRVLVAHNAQFDYDFLAHEFAR----------AR 120 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 ++ L A + PT L ++A GVP H A+ D A F Sbjct: 121 LYLPVTRRLCTLALNRQVDPPTRDMKLGSLAAHYGVPRTRAHDALDDTRVLAGIFLRATL 180 Query: 182 TAAAHL 187 AA L Sbjct: 181 REAARL 186 >UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRP3_9BACT Length = 193 Score = 77.2 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 18/177 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 + +D+ETTGL VE+G + G F ++ + +A+ I+G + Sbjct: 10 FVAIDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIP--SEAVAIHGITDE 67 Query: 64 GLYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + +L+ NP+FD + ++ + V Sbjct: 68 MVEGA----PGLSEASIALASFLKDEEPMVFHNPSFDLGFLDANMRAIKGSWNVMPVFDT 123 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + L A+A G+ H A+ D +A F+++ Sbjct: 124 ----------CGLARKAFPGIKGYSLVALARHFGLSGGGHHRALEDCRYSASLFNLI 170 >UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gammaproteobacteria RepID=Q5ZVQ6_LEGPH Length = 251 Score = 77.2 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 15/179 (8%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTG+ + +E+G + + + HI + D A ++G Sbjct: 22 VILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTEF 81 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + L + E ++ G+ N FD + + + + Sbjct: 82 LQDKPLFQD----IVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLED-----Y 132 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 R+ D A K P + LDA+ +R + NR H A+ DA A+ + + Sbjct: 133 CRILDTLILAREK---HPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTG 188 >UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=11 Tax=Bacilli RepID=DING_STAEQ Length = 902 Score = 77.2 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 15/175 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG D +++G+ V + + + L P ++ E Sbjct: 5 TFAVVDLETTGNQLDYDEIIQIGITFVRQNQVIDTYHSMIRTDLE--IPPFIQALTSIEE 62 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + +A + A ++ ++ F N +FD + + ++ F P Sbjct: 63 EMLVQAPYFNEVADDIYQL---IKDCVFVAHNISFDLNFIKKAFEKCNIQFKP------- 112 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L + K+ + L A+AE +P+ N H A DA TA Sbjct: 113 KRVMDTLELF---KIAFPTDKSYQLSALAESHHIPLNNAHRADEDATTTAKLMIK 164 >UniRef50_Q2B6U9 Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6U9_9BACI Length = 243 Score = 77.2 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 16/175 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYY 61 + IV+D+ETTG D + +G + ++ G ++ + P+ ++ G Sbjct: 58 EAIVMDIETTGFFPDQGDEIISIGAVKIENGTINEDKKFYSLIRYEKTLSPQIEQLTGL- 116 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 RG + E + T + + + + + Sbjct: 117 -RGSQLKEAPP--LPEVLIEFFKFCEARTIIAHHARHEKSFLQNASWKHFK-------AP 166 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 + H + Y ++ L+ L+ + G+PV+ RH A+ DA A + Sbjct: 167 LKHRIIDTSFLY---RIAEPELNLQRLEDLCSHNGIPVMERHHALEDARLAAELW 218 >UniRef50_Q1JYJ5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JYJ5_DESAC Length = 193 Score = 77.2 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 14/177 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VDLETTGLD T + + + G V+ + P++++ +G + Sbjct: 6 FCIVDLETTGLDLTTDTIINAAAVKIKKGRITKIY-ETYVKPPTSIPPESIQFHGITDDM 64 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + E ++ + G + FD ++ R + + + G W Sbjct: 65 L----VDKPSIGEVLPEFMTFIGDSMITGHHINFDLKMLDR-HLRENYDCNL--EGAPW- 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + KL ++ LD + + RH A+GD+ ATA F + H Sbjct: 117 --LDTMLLH---KLVMENNTSTQLDDLLNVYCIDCEQRHRALGDSIATAKVFLRILH 168 >UniRef50_Q7VGH4 DNA polymerase III n=2 Tax=Helicobacter RepID=Q7VGH4_HELHP Length = 266 Score = 77.2 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 19/175 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYYER 63 L+ VD+ET G +E+G L V GE + A P+ + ++ G + Sbjct: 73 LVFVDIETNGAKPQQCQIIEIGALKVKGGE---IIDKFESYVYADEVPENITQLTGICQA 129 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + GE + +L + F N FD V + + Sbjct: 130 DIAYA----PSIKEVLGEFRAFLGTDVFVAHNVNFDYGFVD-------YHLRQCGLFGLL 178 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + +L + L+ L + E LG+ H A DA + F++ Sbjct: 179 NPKLCTIELAKKTILS----PRYALGFLNEFLGIRTAVTHRAYADALTSFRVFEI 229 >UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCE6_BRAFD Length = 551 Score = 77.2 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 59/179 (32%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 L+VVDLETTG D E+G + V GE L F + E+ A ++ G + Sbjct: 20 TLVVVDLETTGTDPAADAITEIGAVKVRGGEVLGEFRTFVDPERPIPAYIASL--TGITD 77 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + D+ N FD ++ Q + + Sbjct: 78 AAVAEA----PSIRTVLPMFLDFAGDAALVAHNARFDIGFLSAQAAACEITWPR------ 127 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 R+ D A A D L +A +G + H A+ DA AT + Sbjct: 128 --PRVLDTLALARTVFRRDEVRDHRLSTLARHVGAGITPDHRALSDARATVDVLHAIIE 184 >UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR66_CLOPH Length = 235 Score = 77.2 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 28/181 (15%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D+E+TGL + +E+ + G+ E+ ER Sbjct: 3 FLAIDIESTGLSPEKDRIIEIAAIRYIDGKP--------KERFEKLINPG---CPLPERI 51 Query: 65 LYREALTEQQTAVAW------GEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 +TE A A E + + G N + D + + + + Sbjct: 52 TELTGITEDMLAGAMTEREVIKEFLTFAGEDVLLGHNVSVDFSFIKTAADRLKIGYERQG 111 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + ++ R E + L+++ E G+ H A+ DA A A + Sbjct: 112 IDTLYLSRTLKSDL-----------EKKNLESMCEHYGIIRECSHRALEDAIAAATLYQK 160 Query: 179 L 179 L Sbjct: 161 L 161 >UniRef50_C3XME5 DNA polymerase III subunit epsilon n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XME5_9HELI Length = 267 Score = 76.8 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 22/184 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAM-EINGY 60 + +VD+ET G + P+E+G L V G+ + F + A P+ + +I G Sbjct: 69 ETFCIVDIETNGHNPCVHTPIEIGTLKVRNGKVVDCFESFV----FNAEIPEYITKITGI 124 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + A + + +L + F N FD +++ G Sbjct: 125 NAQMLENA----PKLASVLEKFKLFLGDSIFVAHNVDFDYNFLSQSLEKCGF-------G 173 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-L 179 +++ RL + + L + E LG+ N H A+ D+ F + L Sbjct: 174 YLYNPRLCTIKL----AQRVLQAPRYSLGFLNEFLGINHQNLHRALQDSKTALEIFKICL 229 Query: 180 RHTA 183 + Sbjct: 230 KKIP 233 >UniRef50_Q0EZC1 Probable DNA polymerase III (Epsilon chain) protein (Fragment) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZC1_9PROT Length = 300 Score = 76.8 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 74/192 (38%), Gaps = 24/192 (12%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLL-----NVDTGESLYFVPHITVEQLAAADPKAMEI 57 +LI++D ETTGL + VE+G + V +G+ F +I E+ + + I Sbjct: 54 RLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPER--NIPDEVVRI 111 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + E D++ G T N FD + + + P Sbjct: 112 HGI----DNAKVKDQPTFREIAQEFLDFIEGATLVIHNAPFDLGFIMNELRINNFP---- 163 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFC 175 + H ++ D +A K P + LDA+ +R + +R H A+ D+ A Sbjct: 164 ---EIGHMQVIDTLVFAREK---HPHQRNNLDALCDRYNIERGHRELHGALLDSELLAEV 217 Query: 176 FDMLRHTAAAHL 187 + + L Sbjct: 218 YLGMTGGRQFSL 229 >UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTI9_9FIRM Length = 828 Score = 76.8 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 19/183 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 ++ VVDLETTG D +++G + ++ G+ L H + P + I G Sbjct: 7 RIAVVDLETTGSHLDQGDQIIQIGAVLIEDGQVL--AQHSMLLNPERNIPTHITAITGI- 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++A T Q A W E L+ F N FD T + + + F P Sbjct: 64 QSDQVQDAPTFSQVAGLWYE---RLKDCFFVAHNLGFDLTFLQAKFAEQGLDFQP----- 115 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L K+ + L +++ G+ + H A+GDA TA D+L H Sbjct: 116 ------PALDTVQLAKIFLPQAPGFNLQDLSQFFGLNFQDAHDALGDARMTAHLLDVLAH 169 Query: 182 TAA 184 AA Sbjct: 170 QAA 172 >UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8GAH5_CHLAD Length = 233 Score = 76.8 bits (187), Expect = 4e-13, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 8/178 (4%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL---YFVPHITVEQLAAADPKAMEINGY 60 V+D+ETTGLD + +G +NV+ G L + I +++ ++ Sbjct: 37 PYTVIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHL 96 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L A E+ + G D + + + Sbjct: 97 TPEEL----RDAPPPAEVLAELLRLIAGRVLVVHVAEIDVRFINAALKPFGGRLRRPILD 152 Query: 121 RVWHHRLADLAAYAAGKLNID-PTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L A G+L D P L + LG+P+ +H+A+ DA TA F Sbjct: 153 TARLAMTLHLNAQWLGELPRDMPAPAVELRGLTGALGLPIYAQHNALNDAVTTAQLFI 210 >UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC319F Length = 234 Score = 76.8 bits (187), Expect = 4e-13, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 23/187 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI-NG 59 M K + +DLETTGL +E+G + G+ V+Q + I Sbjct: 1 MIKDFVAIDLETTGLSPYDNKIIELGAVRYRDGKP--------VDQYNTLINPGVHIPER 52 Query: 60 YYE-RGLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 E G+ + +++ + +++ + G N FD T +A +S+ +S Sbjct: 53 ITEITGIDDDMVSKAPYIDDELDRIMEFIGNDVILGHNVIFDYTFIAGALAGHSIEYSA- 111 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + K + E + L+ + E + V H A DA + A + Sbjct: 112 ----------EAIDTLKFAKKVLPANESKNLEHLCEMFDI-VTIHHRAYEDAMSAANVYF 160 Query: 178 MLRHTAA 184 L + Sbjct: 161 RLCELSG 167 >UniRef50_A1TZ29 DNA polymerase III, epsilon subunit n=3 Tax=Marinobacter RepID=A1TZ29_MARAV Length = 235 Score = 76.4 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 15/174 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVP--HITVEQLAAADPKAMEINGYY 61 +LIV+DLETTGL+ + +G + ++ G ++ + + + + + I+G Sbjct: 40 RLIVLDLETTGLNASKDEVIAIGAVAIEGG-VIHLNDQFDLILRRPELDIRETVLIHGIG 98 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + T+ A + +W+ G+ + AFD + + + T+ Sbjct: 99 PEALTQGYETQD----ALLYLLEWMNGDPILAYHSAFDQKFLEKTLKSQ----LGYTLPH 150 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 VW D+A + GLD A+ G+ + RH A DA TA Sbjct: 151 VW----MDVAELMPAFFPKATIKGRGLDDWADVFGLEISERHHAAADALVTAEL 200 >UniRef50_Q11G58 DNA polymerase III, epsilon subunit n=1 Tax=Chelativorans sp. BNC1 RepID=Q11G58_MESSB Length = 498 Score = 76.4 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 63/176 (35%), Gaps = 17/176 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYERG 64 + D ETTGLD TA V+V + + G ++ + P ++ I+G + Sbjct: 16 VAFDTETTGLDTRTARVVQVAGVAISRGAVRQDESFESLVHPGMSIPPDSIRIHGITD-- 73 Query: 65 LYREALTEQQTAVAWGEVQDWLRG-NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E A + RG G FD I+ R+ + Sbjct: 74 ---GMLREAPAFAAVWRSFEMFRGVRPLIGYAVGFDLAIIEREAARAGIRR--------- 121 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R L ++ L+A+A LG ++ RH A+ DA A A F L Sbjct: 122 -KRPRTLCVRTLSRIVNRDLRGHSLEALAAWLGFEIIGRHQALDDAMAAAKVFTGL 176 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 76.4 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 25/187 (13%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + V+DLETTG + ++VGL +D + VE ++ +EI + + Sbjct: 2 KFAVLDLETTG-HSVSDDILQVGLAVLDDNLEI-------VETYSSFVRPTIEIPAFITQ 53 Query: 64 --GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 G+ + + + + ++ +L N FD+ + + Sbjct: 54 LTGIDADMVADAPELDEVLMQLIPYLEDAVLVAHNVNFDAGFLNQALDRCGYH------- 106 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF---- 176 RL + ++ L AV E G+ H A DA ATA F Sbjct: 107 PFIGRRLDTIELL---RILYPSITTYQLGAVTELFGIAHDQHHRADSDAIATAELFAQSV 163 Query: 177 DMLRHTA 183 LR Sbjct: 164 QKLRQLP 170 >UniRef50_Q2VYH6 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease n=93 Tax=Bacteria RepID=Q2VYH6_MAGSA Length = 257 Score = 76.4 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG D VE+G + + V H +A +++G Sbjct: 31 IVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPERDMPEEAFKVHGLSADF 90 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A + +++ N FD + + P P++ Sbjct: 91 LSDK----PLFAEIVADFLEFIGDVPLVIHNAEFDMRFINAELTRLGFPPLPMS------ 140 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R D A + P LDA+ R + +R H A+ D+ A + L Sbjct: 141 -RSIDTVMMARKRF---PGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLIGG 196 Query: 183 AAAHL 187 L Sbjct: 197 RQPGL 201 >UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C737_9FIRM Length = 204 Score = 76.4 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 16/177 (9%) Query: 7 VVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYERGL 65 V+D+ETTGL+ D +EVG + V + + F ++ ++ P+ ++ G E + Sbjct: 26 VIDIETTGLNPDENEIIEVGAVKVRDRKIVDEFSSFVSPKKDI-ISPEIRKLTGIDEAMI 84 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 Q +++ G G N FD + YS + + Sbjct: 85 EGA----DQIEDVIPRFNEFIDGEILLGHNVNFDINFLYDNYERYSDFYLSNDYVDL--- 137 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + E L+ V ++LG+ V +H A+ D CF+ R T Sbjct: 138 -------LKISRKLSPEFENHKLETVLKKLGIKVDQQHRAVSDCIDAHHCFEKYRET 187 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 76.4 bits (186), Expect = 5e-13, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 26/193 (13%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V+D+ETTG +++ + ++ G+ E+ + I + Sbjct: 4 QRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQ--------ITERFSKYINPNKSIPAFI 55 Query: 62 ER--GLYREALTEQQTAVAWGE-VQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 E+ G+ + + +Q A E V L G F N FD V + Sbjct: 56 EQLTGISNQMVENEQPFEAVAEEVFQLLDGAYFVAHNIHFDLGFVKYELHKAGFQLPDCE 115 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF-- 176 V L ++ E L ++E L + H A DA T F Sbjct: 116 V----------LDTVELSRIVFPGFEGYKLTELSEELQLRHDQPHRADSDAEVTGLIFLE 165 Query: 177 --DMLRHTAAAHL 187 + LR L Sbjct: 166 ILEKLRQLPYPTL 178 >UniRef50_B4AHF2 DNA polymerase III PolC-type (PolIII) n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AHF2_BACPU Length = 240 Score = 76.0 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 28/183 (15%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTG-------ESLYFVPHITVEQLAAADPKAM 55 + +V+DLETTGLD+ +E+G + + G E F + +E+ Sbjct: 4 QTYVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHTMVALEEGRDLPEFIT 63 Query: 56 EINGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 + G E L + A E+Q+++ N FD + ++R + P Sbjct: 64 NLTGITEEDLEDA----PEEWDALDELQNFIGDAIVVAQNAPFDLSFISRGDIE---PER 116 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 A ++P L V +R+G+ + H A+ D AT Sbjct: 117 FYCT--------------RAMARFVEPELSASLKDVTKRIGISLDGHHRALNDVEATIEV 162 Query: 176 FDM 178 F Sbjct: 163 FRR 165 >UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUD4_XYLCX Length = 547 Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 64/181 (35%), Gaps = 30/181 (16%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK----AMEINGY 60 VVD+ETTGL +EV +L +DT E +P+ A I+G Sbjct: 49 FAVVDVETTGLSPRYDRVIEVAILRLDTN------GRTVDEWSTRLNPQRTVGATWIHGI 102 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM---PFSPL 117 + + A +V L G F G N FD+ V + + Sbjct: 103 TD----ADVAHAPSFADVAAQVAQRLTGAVFVGHNARFDAGFVLAELTRAGWDAPEPTIW 158 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 HH L D ++ L VA G+ + + HSA+GDA ATA Sbjct: 159 CTQAASHHWLPDASS-------------RRLVDVAAAAGISLTHAHSALGDARATAAMLT 205 Query: 178 M 178 Sbjct: 206 R 206 >UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V2X6_9AQUI Length = 206 Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 66/179 (36%), Gaps = 14/179 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++DLETTGL +EV + +G + + H+T + K + + G Sbjct: 11 TFVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQLHHLTKPRENFIPSKVINLTGIT-- 68 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + EV ++L+ + N FD + ++ L Sbjct: 69 --NAMVIDKPYFEDIYPEVYNFLKDSIVVAHNAKFDISFLSEVHKIVFKNNLRL------ 120 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 H+ D A + + + L ++ LG+ +H A+ DA AT F + Sbjct: 121 HYICTDNLA----RRIFPEIQKKSLSSLTNYLGINFKQKHRALSDAQATLQAFQTMLEY 175 >UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IIU0_PSEHT Length = 730 Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 26/184 (14%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VVDLETTG E+GL+ V G+ + + I G+ Sbjct: 564 NRIYSVVDLETTGALKGGNKITEIGLVKVQHGKVI--------DTWTTLVNPQRHIPGFI 615 Query: 62 ER--GLYREALTE-QQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFS--P 116 G+ ++ A + L G+ F N FD + ++ +PF Sbjct: 616 TSLTGISDSMVSNAPVFADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVPFKMPK 675 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L A L +Y+ G L ++ + + + H A+ DA ATA Sbjct: 676 LCTVVESRKAFAGLKSYSLGNL-------------SKHFNLNLTSHHRALADATATAQLL 722 Query: 177 DMLR 180 +++ Sbjct: 723 LLIQ 726 >UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q83YZ1_PEWBP Length = 1492 Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 26/182 (14%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYER 63 +V+D+ETTG + + + + G+ + + + +P K ++I+ +R Sbjct: 405 YVVLDIETTGFSKTRDRIISIAAVKIQNGKIIEYFDEL-------INPGKDIKISNLIQR 457 Query: 64 GLYREA---LTEQQTAVAWGEVQDWLR---GNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 L + + D++R N +FD + + + L Sbjct: 458 LTNISDEILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLL 517 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAF 174 V D A N + L+ + + + + H+A+ DA ATA Sbjct: 518 PV--------IDTLTLAQKYFN-KILKYFSLEKIVKSFKIKLDSEGQYHNALFDARATAL 568 Query: 175 CF 176 F Sbjct: 569 IF 570 >UniRef50_A6Q1S7 DNA polymerase III, epsilon subunit n=2 Tax=Epsilonproteobacteria RepID=A6Q1S7_NITSB Length = 276 Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 65/180 (36%), Gaps = 21/180 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAM-EIN 58 ++ +VVD+ET G + + +E+G + + F I E + P+ + ++ Sbjct: 66 QEQEFVVVDIETNGSKPEFSQVIEIGAIKFKGNTIIDRFESFIYAEDV----PEYISKLT 121 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + L +++L+ F N FD ++ + L Sbjct: 122 GILQEDLENA----PSQKEVLLSFKEFLQDAVFVAHNVRFDYNFISSKL-------EQLG 170 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + ++ + +L + +E GL+ + E LG+ H A DA M Sbjct: 171 LEKLANRKLCSIDL----ARKTIESERYGLEFLNETLGINTAVSHRAYADALTAYKILQM 226 >UniRef50_C9Z7X4 Putative exonuclease n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z7X4_STRSW Length = 215 Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 65/179 (36%), Gaps = 11/179 (6%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGY 60 + + V+DLETTGLD + VG + V G ++ + A +++++G Sbjct: 20 SAEYCVIDLETTGLDLRRDEIISVGAVPVREGRIDLGDSFYSLVRPRCAVSVASIKVHGL 79 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + A + L G + ++R + T V Sbjct: 80 RP----GDLDSAPDPATVGQALSPRLSGRVVVAHAAWIERAFLSRTQSTVGWSQVRAVVD 135 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 A LA D L+ +A RLG+PV H A+GDA TA F L Sbjct: 136 ------TAALARATGCWAGHDSGREPPLELLARRLGLPVCTPHHALGDALTTATVFLAL 188 >UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class) RepID=B9KXZ3_THERP Length = 982 Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 22/180 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-ING 59 M + + +D+E TG+D + +EV + E T+ Q P A+ + G Sbjct: 1 MPRIYVALDIEATGMDPERDEIIEVAAIKFR--EEEVLERFETLVQPRRPVPLAVASLTG 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 R L R A + QQ A + ++R G +P +D +++ + P Sbjct: 59 LTMRDL-RRAPSFQQIAPRLRQ---FVRNYPIVGQSPDYDLQMLSAHGLELRNPVY--DT 112 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ L DL AY+ L +A RLG+ V +H A+ D T F L Sbjct: 113 FRLATILLPDLPAYS-------------LAGIAARLGISVAQQHRAMADVETTMAVFLGL 159 >UniRef50_B4RBF9 DNA polymerase III epsilon chain n=3 Tax=Alphaproteobacteria RepID=B4RBF9_PHEZH Length = 234 Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 67/190 (35%), Gaps = 16/190 (8%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG D VE+ L ++ H ++ +A +++G Sbjct: 1 MARE-IVLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDPCRDMPAEAEKVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + D++ N AFD V + + Sbjct: 60 LST--AFLRGKPKFEAPEIVEAFLDFVADAPIVAHNAAFDRAFV-------NYELGLCSR 110 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + HR D A A + P LDA+ +R + + R H A+ D A + Sbjct: 111 AELPDHRWIDTLALAKQRF---PGMHNSLDALCKRFKISLAEREKHGALIDTKLLAAVYL 167 Query: 178 MLRHTAAAHL 187 LR L Sbjct: 168 ELRGGRERRL 177 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 18/178 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYF-VPHITVEQLAAADPKAMEINGYY 61 + +V+DLETTG +E+G++ ++ E + Q P + G Sbjct: 3 RFVVIDLETTGHAPSKNDKIIEIGMVIIEGDEIIDTKTTFFNPGQPIP--PFITNLTGIS 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + L ++ ++ L + N FD + + + Sbjct: 61 DDDVADAPLFTEKALS----IKSILEDSYIIAHNVNFDLGFLNAELKENGIDRL------ 110 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 H+++ D + ++ L +++ + + H A+ DA TA F L Sbjct: 111 --HNQVLDTVELS--RILFPTAPGYKLSQLSDHFNLQHDDPHRALSDAYVTAKLFQKL 164 >UniRef50_A8LH88 Exonuclease RNase T and DNA polymerase III n=2 Tax=Actinomycetales RepID=A8LH88_FRASN Length = 389 Score = 75.7 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 64/182 (35%), Gaps = 16/182 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + VVD+ETTGL + V ++ ++ T+ DP + I+G Sbjct: 75 RPYAVVDVETTGLSPTRDRVLSVAVVLTAADGTVE-HRWSTLLDP-GCDPGPVHIHGLTR 132 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A EV L G N AFD ++A + + T+ Sbjct: 133 QRLA----GSPTFAAVADEVAGLLAGRVLVAHNAAFDWRMLAGEAMRIG-----TTIPVE 183 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 W LA+ +L ++ L ++A GV H A DA A + Sbjct: 184 WRLCTLTLAS----RLGLEL-PSLRLASLAAYWGVVQRRAHDAQDDAEVLAALLPRILQR 238 Query: 183 AA 184 AA Sbjct: 239 AA 240 >UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAB9_9FIRM Length = 525 Score = 75.7 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 23/183 (12%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 K+ + D+ETTGLD +EVG + + G ++ + + E +A IN Sbjct: 50 KRYVAFDVETTGLDSKKDRIIEVGAILFENGHTVETYSSLVNPE--VKISKEATTINHIT 107 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRG-----NTFAGSNPAFDSTIVARQRVTYSMPFSP 116 G+ ++A TE + E+ +L N FD + +++ + Sbjct: 108 -NGMVKKAPTED---IVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQI 163 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L L + + I VA+ + H AI DA Sbjct: 164 LC-----------LDTLSLSRKIIPGLSNYKQTTVAKHFNIKNKQEHRAISDAEVCGEIL 212 Query: 177 DML 179 L Sbjct: 213 WKL 215 >UniRef50_A3EQH5 DNA polymerase III, epsilon subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3EQH5_9BACT Length = 265 Score = 75.7 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 24/170 (14%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 ++ +D+ETTGL D A +E+G + + G+ L T+ + A P + +ING Sbjct: 2 KVTFLDVETTGLLRDSRARIIELGFSSWENGKLLRKT--STLIKGADIVPDNISKINGIT 59 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRV---TYSMPFSPLT 118 L + W ++ ++G+ N AFD +V R+ + + + Sbjct: 60 TEML----KDAPRFEEVWKSIKGDIQGSLLVAHNLAFDVGMVNRELILADRIPLGNMGID 115 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGD 168 + L +L++Y G +A+ +G+ N H A+GD Sbjct: 116 TLPLSRKMLPELSSYRLG-------------EIAKHMGILNENPHRAMGD 152 >UniRef50_UPI0000D530A7 DNA polymerase III subunit epsilon n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D530A7 Length = 226 Score = 75.7 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 19/181 (10%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D+ETTGLDY +E+G + + + + H + L + ++I+G Sbjct: 4 IILDIETTGLDYKEGHRIIEIGCVEL-NQKEVGSNFHQYINPLKTLTDENIKIHGITNEF 62 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + L E + ++++ + N FD + + S P ++ Sbjct: 63 LEDKPLFEDVAD----KFLNFIKDSQIIAHNANFDVGFLNYELEKVSKP-------QIAK 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGV-PVVNR--HSAIGDAAATAFCFDMLRH 181 R+ D A + P + LDA+ ++L V +V+R H A+ DA + L+ Sbjct: 112 DRIVDTVVIARNRF---PGQQVNLDALVKKLKVNSLVDREFHGALKDAKILTDVYLELQG 168 Query: 182 T 182 Sbjct: 169 I 169 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 75.7 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 25/182 (13%) Query: 1 MAKQLIVVDLETTGLDYD--TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M+K+ +VVDLETTG + ++ + V+ GE L ++ EI Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEI--------FSSFINPKREIP 52 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDW----LRGNTFAGSNPAFDSTIVARQRVTYSMPF 114 + L + + A + +V L+G F N FD + + Sbjct: 53 PFIT-ELTGIDESMVKQAPLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGY-- 109 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + ++ + ++ + + L +A++ + H A DA ATA Sbjct: 110 -----TEIHCPKVDTVEL---AQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAE 161 Query: 175 CF 176 F Sbjct: 162 LF 163 >UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anaplasmataceae RepID=Q2GJZ1_ANAPZ Length = 244 Score = 75.7 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 21/184 (11%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + IV+D ETTGLD D +E+G + + V H ++ A ++G Sbjct: 1 MKVREIVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + + A E+ D+L+ + N FD + + + Sbjct: 61 ITRESL----IGMPKFAEVADELLDFLQDSALVIHNARFDMRFL------------EVEI 104 Query: 120 GRVWHHRLADLAAYAAGKLNID--PTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFC 175 R+ + R ++ P LDA+ +R + R H A+ DA A Sbjct: 105 ERLSNKRAITNTIVDTLEMARKKFPGMPASLDALCKRFNISTQERKFHGALKDATLLARV 164 Query: 176 FDML 179 + L Sbjct: 165 YVEL 168 >UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 family protein n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BET5_9FIRM Length = 295 Score = 75.7 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 54/181 (29%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 K I++DLETTGLD +E+G + + Y +L+ I G Sbjct: 126 TKAYIIIDLETTGLDPINDRIIEIGAIKIGKENKEYSSIIWQDIKLSEKISN---ITGIS 182 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + A E D++ +T G N FD + P Sbjct: 183 DEDIKKGK----DEKNAINEFIDFIGEDTLVGYNINFDIKFINESLKRQEKPKIKNMTYD 238 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 V + D KL V + G+ H A+ D L Sbjct: 239 VMQYVKNDKLFLKNYKLET----------VIKEYGINKNVPHRALEDVKIIQKLIAKLNK 288 Query: 182 T 182 Sbjct: 289 L 289 >UniRef50_Q2RWQ8 Exonuclease n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RWQ8_RHORT Length = 209 Score = 75.7 bits (184), Expect = 8e-13, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 63/190 (33%), Gaps = 23/190 (12%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL---YFVPHITVEQLAAADPKAMEINGY 60 +++ VD ETTGLD + + + V L + + D A+ I+ Sbjct: 30 EVVSVDCETTGLDRHNDDIITLAAVRVRGNRVLTSQKLDLVVKPSRPIRRD--AVCIHHL 87 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ---RVTYSMPFSPL 117 E+ + R + A + G FD ++ R + +P + Sbjct: 88 REQDVERGLAPRE----AVARFLRFAGSRPLIGYYLEFDVALIDRLVRPWLGIGLPNPRI 143 Query: 118 TVGRV---WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 V + W R Y T + E L +P ++ H A DA T+ Sbjct: 144 EVSEMFYDWRTR-GREELYTG-------TVDLRFATILEALDIPPLHNHDAFEDAVMTSL 195 Query: 175 CFDMLRHTAA 184 + LR A Sbjct: 196 AYLKLRARAG 205 >UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria RepID=B0VKV7_ACIBS Length = 459 Score = 75.7 bits (184), Expect = 8e-13, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 72/185 (38%), Gaps = 19/185 (10%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 + +++D ETTG + D +EVG + + + HI + +++++G Sbjct: 229 QGPRQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINP-EKPVGDSVQVHG 287 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMP-FSPLT 118 + L + + + A + ++L+G N FD + + +P S + Sbjct: 288 ITDEFL----VDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSEVC 343 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCF 176 + D A A K P + LDA+ R +P +R H A+ DA + + Sbjct: 344 -------EVTDTLALAKNK---HPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVY 393 Query: 177 DMLRH 181 + Sbjct: 394 LAMTG 398 >UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrhizobium RepID=A4YW65_BRASO Length = 737 Score = 75.7 bits (184), Expect = 8e-13, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 30/184 (16%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTG---ESLYFVPHITVEQLAAADPKAMEING 59 + +VVD+ETTG E+G + V E + + + A +E+ G Sbjct: 561 QDYVVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQWHSLINPQRPIPAKI----VELTG 616 Query: 60 YYERGLYREALTEQQTAVAWGEVQD----WLRGNTFAGSNPAFDSTIVARQRVTYSMPFS 115 + + + A + E+ D ++ F N FD ++ + F Sbjct: 617 ITNQMV--------RDAPVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRF- 667 Query: 116 PLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 R L + GL + G+ + + H A+ DA A A Sbjct: 668 ----------RFPKLCTCVGMRRRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAAAHL 717 Query: 176 FDML 179 +++ Sbjct: 718 LNLI 721 >UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C525 Length = 529 Score = 75.7 bits (184), Expect = 8e-13, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 +VVDLETTGL +E+G + G+++ F I ++ G Sbjct: 22 TFVVVDLETTGLKAKNDHIIEIGAIKTRGGKTIGTFSSFIDPGMEIPDHITSL--TGITT 79 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + T Q + ++ RG+ + N FD + + + + Sbjct: 80 ----ADVETAPQLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWPS------ 129 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A L+ L +A +G P H A+ DA AT L Sbjct: 130 --PSVVDTLTLARRVLDRSQVGSFKLSQLARYVGSPNRPAHRALDDAIATVDVLHYLME 186 >UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1K0_9GAMM Length = 488 Score = 75.7 bits (184), Expect = 8e-13, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 63/179 (35%), Gaps = 20/179 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++++D ETTG E+ L+ V+ G + + + L P + G + Sbjct: 9 PSMVILDCETTGGRASRDRLTEIALIEVEDGHVVKRWQTL-LNPLRPIPPWITRLTGITD 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT--YSMPFSPLTVG 120 + +A T + A D G N FD + + + Y++ L Sbjct: 68 ATV-ADAPTFDEIADELFACLD---GKVIVAHNARFDYSFLRQSFQRCGYTLGNKTLCSV 123 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ GLD + ERLG+ + NRH A+ D F+ + Sbjct: 124 KLSRQLF-------------PEHRSHGLDRIIERLGLTIDNRHRAMADTEVLLAFFEHI 169 >UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bacteria RepID=A1BGS1_CHLPD Length = 219 Score = 75.7 bits (184), Expect = 8e-13, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 25/189 (13%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA ++V+D ETTGL +E+G + V+ GE V++ I+ Sbjct: 5 MADSVVVLDFETTGLSPQYGDRAIEIGAVLVEHGE--------IVDRYQKLMNPGFRISR 56 Query: 60 YYER--GLYREALTEQQT-AVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 + E G+ E L+ Q E +++ G+ N +FD + + + Sbjct: 57 FIESYTGITNEMLSGQPCCEEVMTEFSEFIAGHNIVAHNASFDRRFLDFELKRAKRVYEG 116 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATA-F 174 + + + L + G+P + H A+ DA TA Sbjct: 117 ACC-----------CSLLVSRRIYQDSPNHKLQTLVSHAGIPEIGSFHRALADAEMTAHL 165 Query: 175 CFDMLRHTA 183 M+ Sbjct: 166 WMSMIDRIR 174 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 194 1e-48 UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia... 192 6e-48 UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth... 191 1e-47 UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Strept... 190 2e-47 UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostri... 190 2e-47 UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacte... 189 3e-47 UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 189 4e-47 UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia ... 188 9e-47 UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba... 187 2e-46 UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia... 187 2e-46 UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive... 186 5e-46 UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte... 186 5e-46 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 185 8e-46 UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=... 184 1e-45 UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 184 1e-45 UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili... 183 3e-45 UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero... 182 4e-45 UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhod... 181 1e-44 UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu... 180 3e-44 UniRef50_A0M2M5 Exonuclease family protein n=1 Tax=Gramella fors... 179 3e-44 UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 179 4e-44 UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Coryneb... 178 8e-44 UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermane... 177 1e-43 UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=... 177 2e-43 UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive... 177 2e-43 UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha s... 176 3e-43 UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI... 175 4e-43 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 175 8e-43 UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A... 175 9e-43 UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 174 1e-42 UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 174 1e-42 UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli R... 174 2e-42 UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=... 173 3e-42 UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 173 3e-42 UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit... 173 3e-42 UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 T... 173 3e-42 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 172 4e-42 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 172 4e-42 UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte... 172 4e-42 UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para... 172 5e-42 UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re... 172 5e-42 UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridi... 172 7e-42 UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asti... 172 8e-42 UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida... 171 8e-42 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 171 8e-42 UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrh... 171 1e-41 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 171 1e-41 UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostri... 171 1e-41 UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clost... 170 1e-41 UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Pro... 170 2e-41 UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 170 2e-41 UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot... 170 2e-41 UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gamm... 170 3e-41 UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 169 3e-41 UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 169 4e-41 UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cell... 169 4e-41 UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like do... 169 4e-41 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 168 6e-41 UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Fran... 168 8e-41 UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Beta... 168 9e-41 UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseu... 168 1e-40 UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult... 168 1e-40 UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenib... 167 1e-40 UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG en... 167 1e-40 UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gam... 167 1e-40 UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte... 167 1e-40 UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acid... 167 1e-40 UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit... 167 2e-40 UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholep... 167 2e-40 UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacte... 167 2e-40 UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein... 167 2e-40 UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit... 167 2e-40 UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Deth... 167 2e-40 UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bactero... 167 2e-40 UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu... 167 2e-40 UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 167 2e-40 UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut ... 166 3e-40 UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gam... 166 4e-40 UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit... 166 4e-40 UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polyme... 165 4e-40 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 165 5e-40 UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax... 165 5e-40 UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0... 165 5e-40 UniRef50_Q48KX3 DNA polymerase III, epsilon subunit n=35 Tax=Pro... 165 6e-40 UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alp... 165 7e-40 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 165 7e-40 UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrot... 165 7e-40 UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=A... 165 8e-40 UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostri... 164 1e-39 UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococ... 164 1e-39 UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para... 164 1e-39 UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia ... 164 1e-39 UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Beta... 164 1e-39 UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucl... 164 1e-39 UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi... 164 2e-39 UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc... 164 2e-39 UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostri... 163 2e-39 UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ... 163 3e-39 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 163 3e-39 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 163 3e-39 UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 163 3e-39 UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alterom... 162 4e-39 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 162 4e-39 UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamm... 162 4e-39 UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rick... 162 5e-39 UniRef50_C7G8J4 Putative DNA polymerase III, alpha chain n=1 Tax... 162 5e-39 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 162 6e-39 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 162 6e-39 UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodoth... 162 6e-39 UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum cen... 162 7e-39 UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostr... 162 7e-39 UniRef50_Q2VYH6 DNA polymerase III, epsilon subunit and related ... 162 8e-39 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 161 8e-39 UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid... 161 8e-39 UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostri... 161 8e-39 UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit... 161 9e-39 UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA po... 161 1e-38 UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostri... 161 1e-38 UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidete... 161 1e-38 UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Trepon... 161 1e-38 UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Bur... 161 1e-38 UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit... 161 1e-38 UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy... 160 1e-38 UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-posit... 160 1e-38 UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Pro... 160 2e-38 UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidob... 160 2e-38 UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeu... 160 2e-38 UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Rose... 160 2e-38 UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alph... 160 2e-38 UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Delt... 160 2e-38 UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodo... 160 2e-38 UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria Rep... 160 2e-38 UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti... 160 3e-38 UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flav... 160 3e-38 UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brev... 160 3e-38 UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothio... 159 4e-38 UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2 159 4e-38 UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolb... 159 5e-38 UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida... 159 5e-38 UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacte... 159 5e-38 UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus Re... 159 5e-38 UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neor... 159 5e-38 UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo... 159 6e-38 UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinom... 159 6e-38 UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphi... 158 8e-38 UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Euba... 158 1e-37 UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Acti... 158 1e-37 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 158 1e-37 UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=... 158 1e-37 UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caul... 158 1e-37 UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonel... 157 1e-37 UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=... 157 1e-37 UniRef50_B0UD78 DNA polymerase III, epsilon subunit n=5 Tax=Alph... 157 1e-37 UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dich... 157 2e-37 UniRef50_C0FUI4 Putative uncharacterized protein n=1 Tax=Rosebur... 157 2e-37 UniRef50_Q0EZC1 Probable DNA polymerase III (Epsilon chain) prot... 157 2e-37 UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 157 2e-37 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 157 2e-37 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 157 2e-37 UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Nei... 157 2e-37 UniRef50_A5IJS5 DNA polymerase III, epsilon subunit n=6 Tax=Ther... 157 2e-37 UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphi... 157 2e-37 UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquif... 157 2e-37 UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anap... 156 3e-37 UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=1... 156 3e-37 UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=... 156 3e-37 UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruege... 156 3e-37 UniRef50_A4CKG8 DNA polymerase III, epsilon subunit n=1 Tax=Robi... 156 3e-37 UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micr... 156 3e-37 UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo... 156 4e-37 UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydroge... 156 4e-37 UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob... 156 4e-37 UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchn... 156 4e-37 UniRef50_C5B532 DNA polymerase III epsilon subunit n=1 Tax=Methy... 155 5e-37 UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ... 155 5e-37 UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robigin... 155 5e-37 UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosm... 155 5e-37 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 155 5e-37 UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chro... 155 6e-37 UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candi... 155 6e-37 UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exon... 155 6e-37 UniRef50_C0QPN1 DNA polymerase III subunit epsilon n=1 Tax=Perse... 155 6e-37 UniRef50_C8RRD8 Exonuclease n=2 Tax=Corynebacterium jeikeium Rep... 155 6e-37 UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 155 7e-37 UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerof... 155 7e-37 UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flav... 155 9e-37 UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 155 9e-37 UniRef50_C6CYA2 DNA polymerase III, epsilon subunit n=2 Tax=Baci... 154 1e-36 UniRef50_B3R0A4 DNA polymerase III alpha subunit n=1 Tax=Candida... 154 1e-36 UniRef50_A9F4T5 DNA polymerase III, epsilon subunit n=1 Tax=Sora... 154 1e-36 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 154 1e-36 UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bact... 154 1e-36 UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flex... 154 2e-36 UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propion... 154 2e-36 UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actin... 154 2e-36 UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lo... 154 2e-36 UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 154 2e-36 UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 154 2e-36 UniRef50_Q8D3D2 DnaQ protein n=1 Tax=Wigglesworthia glossinidia ... 154 2e-36 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 154 2e-36 UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1... 153 2e-36 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 153 3e-36 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 153 3e-36 UniRef50_A4SZE6 DNA polymerase III, epsilon subunit n=1 Tax=Poly... 153 3e-36 UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemma... 153 3e-36 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 153 3e-36 UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 153 3e-36 UniRef50_A3V111 Exonuclease, DNA polymerase III, epsilon subunit... 153 3e-36 UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycopla... 153 3e-36 UniRef50_A1KUV1 DNA polymerase III, epsilon chain n=18 Tax=Neiss... 153 3e-36 UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 153 4e-36 UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bact... 152 4e-36 UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capn... 152 4e-36 UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-rel... 152 4e-36 UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51... 152 5e-36 UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokd... 152 5e-36 UniRef50_Q9ZX22 Gp57 n=2 Tax=unclassified Siphoviridae RepID=Q9Z... 152 5e-36 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 152 5e-36 UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio cross... 152 6e-36 UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macroco... 152 7e-36 UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, pu... 152 8e-36 UniRef50_Q3K0L7 Exonuclease, DNA polymerase III, epsilon subunit... 152 8e-36 UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 151 8e-36 UniRef50_B1VHF1 Putative exonuclease n=1 Tax=Corynebacterium ure... 151 9e-36 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 151 9e-36 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 151 1e-35 UniRef50_A3J795 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 151 1e-35 UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydr... 151 1e-35 UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acid... 151 1e-35 UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplas... 151 1e-35 UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capn... 151 1e-35 UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit... 151 1e-35 UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, e... 150 2e-35 UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinom... 150 2e-35 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 150 2e-35 UniRef50_C1QET6 Exonuclease, DNA polymerase III, epsilon subunit... 150 2e-35 UniRef50_C0GM30 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 150 2e-35 UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrog... 150 2e-35 UniRef50_C0WGE7 Possible exonuclease n=2 Tax=Corynebacterium Rep... 150 2e-35 UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma... 150 3e-35 UniRef50_C9NHS4 DNA polymerase III, epsilon subunit n=2 Tax=Stre... 150 3e-35 UniRef50_B0RTE6 DNA polymerase III epsilon chain n=11 Tax=Proteo... 150 3e-35 Sequences not found previously or not previously below threshold: UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysi... 157 2e-37 UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive... 156 4e-37 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 154 1e-36 UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacill... 154 2e-36 UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclass... 154 2e-36 UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1... 153 3e-36 UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria ... 151 9e-36 UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ... 151 1e-35 >UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT Length = 726 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 + +V D+ETTGL+ E+G + V G+ + F + + +++ G Sbjct: 418 LEDDFVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDRFSAFVNP--GVSIPSFIVKLTG 475 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E ++++G+ N FD + + Sbjct: 476 ITDDMVKDA----PPVEQVLNEFMEFIQGSVLVAHNANFDVGFIKQNAKLMG-------- 523 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 +V + + L + L+ VA+ L + + N H A+ D+ ATA F Sbjct: 524 EKVKNPYIDTLE---LCRKMFPELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIFMHC 580 Query: 180 RHTA 183 + Sbjct: 581 INIL 584 >UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia RepID=DPO3_CLOTE Length = 1427 Score = 192 bits (488), Expect = 6e-48, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 69/175 (39%), Gaps = 18/175 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 +V D+ETTG +E+G + + G+ + + + E++ K +E+ G ++ Sbjct: 413 YVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIP--EKIIELTGIHDY 470 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + D++ + N FD + + + + + F+ Sbjct: 471 MVKDA----PKIEEVLPKFIDFIEDSILVAHNANFDVSFIKKNCKDFGIHFN-------- 518 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L + K + L+ VA+ LG+P++N H A+ DA T Sbjct: 519 NPILDTIP---LCKFLYPELKRYKLNVVAKHLGIPLLNHHRAVEDAKTTGDILLK 570 >UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW68_HALOH Length = 1397 Score = 191 bits (485), Expect = 1e-47, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 17/177 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 + +V DLETTGL+ +E+G + V +G+ + F + + + K E+ G Sbjct: 382 SATFVVFDLETTGLNKFKNEIIEIGAVKVKSGKVIDEFSSFVKPGE--SIPNKITELTGI 439 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + R G+ +++ G+ N FD + G Sbjct: 440 TNEMVSRA----PDIEGVIGDFLEFIDGSILVAHNADFDYGFLQVALKKTGQ-------G 488 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L + + L+ +A L V + N H A+ DA AT+ F Sbjct: 489 DISYPVLDT---LTLSRALLPDLSNHKLNTLARHLNVRLDNHHRAVEDARATSEIFI 542 >UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWZ0_STRM9 Length = 1465 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 71/186 (38%), Gaps = 18/186 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGY 60 ++ +V D+ETTG +E+G + + G+ L PK +E+ G Sbjct: 401 EEEFVVFDIETTGFSPINDKIIEIGAVKLKNGKVLD--RFSEFVNPQTIIPKKIVELTGI 458 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + ++++G T N FD ++++ ++ Sbjct: 459 NDNMVKDSDI----IDKVMPRFLEFVKGTTLVAHNAKFDVGFISKKCEDLNLETD----- 509 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + K+ +D + LD + +R + + N H A+ DA ATA F L Sbjct: 510 ------FSYIDTLEWSKILVDDVKRFNLDTLTKRFNIKLENHHRAVDDANATAELFKKLL 563 Query: 181 HTAAAH 186 +A+ Sbjct: 564 SLVSAN 569 >UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S1A9_FINM2 Length = 1421 Score = 190 bits (483), Expect = 2e-47, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 16/178 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ +V D+ETTGL T E+G + + + + + + K E+ Sbjct: 400 REFVVFDIETTGLSNATEKITEIGAVKIVDNKIVD-EFNQLINPEIPIPEKITELTSITN 458 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + E ++ T N FD + + + + Sbjct: 459 EMVKDM----PKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGI---------- 504 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + A + + LD + ++ V + N H A DA AT F + Sbjct: 505 -NPVRTYIDTLAFARALEPHLKNHKLDTLTKKYNVNLFNHHRACDDARATGEVFICMV 561 >UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z9S3_9FIRM Length = 1474 Score = 189 bits (482), Expect = 3e-47, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 18/187 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 + + +V DLETTG + +E+G + V+ G+ + F + E + ++ Sbjct: 405 LNDRYVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDRFSTFVNPEIPIPFRIE--KLTS 462 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + + ++ + + N FD + + + Sbjct: 463 INDEMV----IDAPKIEEILPQFMEFCKDSVMVAHNSDFDMSFIEANCKRQDLE------ 512 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + A + I LD VA+ LG+ + + H A+ DA TA F L Sbjct: 513 -----CDFTVIDTVAMSRYLIIGLGRYKLDNVAKALGIVLDHHHRAVDDAECTALIFLKL 567 Query: 180 RHTAAAH 186 Sbjct: 568 CKMLEGK 574 >UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=A7HNS3_FERNB Length = 1390 Score = 189 bits (481), Expect = 4e-47, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 16/180 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+DLETTGL+ + +E+G + G+ + T + + K++ I G E Sbjct: 382 TYVVLDLETTGLNPRSDEIMEIGAVKTRDGKVID--EFHTFVRPNKLNKKSLNITGITED 439 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L ++ ++++ + N FD T + + F Sbjct: 440 MLKDA----PDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEF--------- 486 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D + L + + LD + + G+ H A+ DA T F L A Sbjct: 487 NPPYIDTLRLSQA-LLRNKIKSFSLDKLVDHFGLGAFQHHRALDDARVTVNVFWKLIELA 545 >UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia RepID=DPO3_THETN Length = 1401 Score = 188 bits (478), Expect = 9e-47, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 62/183 (33%), Gaps = 18/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 + +V D+ETTGL +E+G + + + + F + + ++ ++ G E Sbjct: 387 EFVVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISS--FITKLTGIDE 444 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + ++ +G N FD + + + + Sbjct: 445 SMVKDA----PLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTV---- 496 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + LD +AE V +++ H A+ DA ATA F + Sbjct: 497 -------LDTLELSRHLYQDLKNYKLDTLAEFFEVKLLHHHRAVEDAKATAEIFIKMLEK 549 Query: 183 AAA 185 Sbjct: 550 LQE 552 >UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae RepID=C7NEP7_LEPBD Length = 1459 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 18/179 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 +V D+ETTG D +E+G + + E + F + E K E+ + Sbjct: 425 YVVFDIETTGFDPFNDKIIEIGAVKMRGREVIGEFSEFVNPE--IPIPQKITELTTITDE 482 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ ++ G T N FD + + + G + Sbjct: 483 MVANA----EKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQ---------KTIDQGLEY 529 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A + + GL + + G+ + H A+ DA ATA F + Sbjct: 530 SPSVIDTLPLA--RTLLPELRGYGLANLVKYFGITLETHHRAVDDAKATAEVFQKFLNM 586 >UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia RepID=DPO3_CLOPE Length = 1449 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 20/182 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D+ETTG +E+G + + GE + V+ K E+ + Sbjct: 434 EYVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTF-VDPKVNIPYKITELTSITQN 492 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + +++ + N AFD + + + + Sbjct: 493 MVNG----QPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMG--------KTLK 540 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC----FDML 179 + + + + + L+ VA+ LG+ + N H A+ DA ATA F + Sbjct: 541 NPVMDTVP---LARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKM 597 Query: 180 RH 181 + Sbjct: 598 KE 599 >UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM Length = 1415 Score = 186 bits (472), Expect = 5e-46, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 18/178 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYYE 62 +V D+ETTGL E+G + + G + P+ + E+ Sbjct: 400 TYVVFDIETTGLSPIRDKITEIGAVKIVDGIIT--ERFSQLINPQMLIPEKVQELTRITN 457 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E + D+++ + N FD+ + R + F Sbjct: 458 ALVENE----PTIEEVAPKFYDFIKDSVLVAHNAKFDTAFIRRVFKENDLDFIN------ 507 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + + T+ L + ++ GV +V H A+ DA ATA F L Sbjct: 508 -----PILDTLSFARATVKDTKKFNLATLCKKFGVSLVGAHRAVNDAEATAHLFIKLI 560 >UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria RepID=C9S0C0_GEOSY Length = 1444 Score = 186 bits (472), Expect = 5e-46, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 17/186 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 + +V D+ETTGL +E+ + V GE + F+ + ME+ G Sbjct: 426 EETYVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSV--TTMELTGI 483 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + DW T N +FD + G Sbjct: 484 TDEMVKDA----PKPDEVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGR-------G 532 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ + + L + + L+ + ++ + + H AI DA AT L Sbjct: 533 KIANPVIDTLE---LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLL 589 Query: 181 HTAAAH 186 A Sbjct: 590 KEAEER 595 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 185 bits (470), Expect = 8e-46, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 16/181 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +V+D ETTGLD +E+G + + G+ + H ++ ++ EI G Sbjct: 355 NATFVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVD-EYHTLIKPSREISRRSSEITGIT 413 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + L + + E +L + N FD + + +G Sbjct: 414 QEMLENK----RSIEEVLPEFLGFLENSIIVAHNANFDYRFLR--------LWIKKVMGL 461 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 W D A A L + LD+V E+LG+ H A+ DA TA F Sbjct: 462 DWERPYIDTLALAKSLLKM---RSYSLDSVVEKLGLGPFRHHRALDDARVTAQVFLRFVE 518 Query: 182 T 182 Sbjct: 519 M 519 >UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=Clostridiales RepID=C7GFY3_9FIRM Length = 697 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 + +V DLETTG D +E+G + V GE F + E + E+ Sbjct: 471 LDDTYVVFDLETTGFSPDKNKIIEIGAVKVVHGEITERFSTFVNPEVPIPYRIE--ELTS 528 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + + ++ N FD + + + + Sbjct: 529 IRDDMV----IDAPKIETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIE------ 578 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + A ++ + LD VA+ LGV + N H A+ DA TA F Sbjct: 579 -----KEFTIIDTVALARILLPQLNRFKLDTVAKALGVSLENHHRAVDDAGCTAEIFVKF 633 Query: 180 RHTA 183 Sbjct: 634 VKML 637 >UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWI2_ALIAD Length = 1440 Score = 184 bits (468), Expect = 1e-45, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 15/183 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D ETTGL+ +E+ + V G+ + ++ + DPK +E+ G Sbjct: 426 EYVVFDTETTGLNAREDTLIEIAAVKVKAGQIVDTYA-TLIDPERSLDPKIVELTGITNE 484 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + A + + RG N FD + + + W Sbjct: 485 MVAG----QPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDP--------W 532 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D A ++ + L + ++ V +VN H A+ D+ ATA F + A Sbjct: 533 EQPVIDT--LALARVLYPGEKNYKLKTLTQKFSVDLVNHHRALADSEATAKVFVHMLKDA 590 Query: 184 AAH 186 A Sbjct: 591 KAR 593 >UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A6Z2_ALHEH Length = 714 Score = 183 bits (465), Expect = 3e-45, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 17/183 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGYYE 62 +V D E TGL+ + + + + V G L + P ++ +G + Sbjct: 509 FVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINPGRPIPPGSVRFHGITD 568 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + V + + ++ N AFD ++ + + F + + Sbjct: 569 DDVQDK----PPIEVVLPQFKSFVGDAVLVAHNAAFDMKFISMKEREAGVRFDNPVLDTL 624 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L D E LDA+ +R G+ + RH+A+GD ATA + Sbjct: 625 LLSALLD-----------GDEEDHSLDALCDRYGIAITGRHTALGDTLATAELLVRIIER 673 Query: 183 AAA 185 A Sbjct: 674 LEA 676 >UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus RepID=C7RGM9_ANAPD Length = 1365 Score = 182 bits (463), Expect = 4e-45, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 57/178 (32%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V DLETTGL E+G V+ G+ + V K +EI G Sbjct: 349 FVVFDLETTGLSRYKDRITEIGACRVEGGKITEIY-NELVNPEMVIPEKIIEITGITNEM 407 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + D+ + + G N FD V + F + Sbjct: 408 V----KDCPTIEEVLPGFLDFCKDSILVGQNTDFDVGFVRENCHRMGLDF---------N 454 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 D A + LD +A +L +P N H A DA ATA F + Sbjct: 455 PIYLDTLPMARA--LFSDMKKFSLDKIARKLEIPAFNHHRASDDARATAQIFIKMFKM 510 >UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI24_RHOM4 Length = 565 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 16/179 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VVD ETTG +E+ + V G + + + P + G Sbjct: 8 FVVVDTETTGSGPA-DRIIELAAVRVQGGRIVERFA-TLINPGRSVPPFITRLTGITTAM 65 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + D+L N AFD ++ + + + Sbjct: 66 L----VGRPSADEVLPDFLDFLGDGVLVAHNLAFDRKMLEAELQRIGLAWPGN------- 114 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + + +GLD + +PV NRH A+GDA ATA L A Sbjct: 115 ---PALCTLRLARRLLPGLPAKGLDGLIRFYQIPVENRHRALGDAEATAHVLLRLLEEA 170 >UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes RepID=Q67P96_SYMTH Length = 1475 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 17/183 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 + +V+D+ETTG +E+G + GE + F + + P+ ++ Sbjct: 453 EFVVLDIETTGFSPIGDDIIELGAVRCRGGEIVDSFQSFVRPTKPVP--PEVQKLTNITP 510 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + A A ++ N FD + + Sbjct: 511 DMLEGA----PEAAEALRAFFQFVGDAIVVAHNAQFDYSFLR-------YHRQKYLGEEF 559 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L + + L A+ + L VP+V+ H A DA A L Sbjct: 560 ANPVLDT---LTLARAVLPHMRSHSLAALTKELQVPLVDHHRADADAKTAAMVLMKLLER 616 Query: 183 AAA 185 A Sbjct: 617 AEG 619 >UniRef50_A0M2M5 Exonuclease family protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M2M5_GRAFK Length = 223 Score = 179 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 75/186 (40%), Gaps = 14/186 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + IV D ETTG +YD + +G + ++ + +P+ ++I+G Sbjct: 38 RFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFLEQKKFNPETVKIHGI--- 94 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E + A + +++ + + FD ++ + +P ++ Sbjct: 95 -IQNEKFEKLSELEALKKFLSYIQNSVLVAHHAGFDMKMINKALSRNGLP-------KLK 146 Query: 124 HHRLADLAAYAAGKLN---IDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L Y ++ ID ++ LD +AE + +++RH+A GDA TA F L Sbjct: 147 NKVLDTSILYKKTRIATNFIDRDKIYSLDEIAEAYNIDLIDRHTASGDAYITALIFMKLL 206 Query: 181 HTAAAH 186 + Sbjct: 207 SRLKKN 212 >UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJN1_9PROT Length = 735 Score = 179 bits (455), Expect = 4e-44, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 17/184 (9%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAAD-PKAMEINGYY 61 V D ETTG++ +++G + + G L + P+ + I+G Sbjct: 544 TYTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRIHGIS 603 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + V + D+ N AFD + + + F Sbjct: 604 DDMV----RGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAF------- 652 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L L + E LD++AERLG+ + +RH+A+GDA ATA F + Sbjct: 653 -SQPVLDTLL---LSGVLHPNQESHQLDSIAERLGIGIEDRHNALGDACATAEVFLKMLP 708 Query: 182 TAAA 185 A Sbjct: 709 LLAQ 712 >UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI21_CORK4 Length = 616 Score = 178 bits (452), Expect = 8e-44, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 15/186 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGY 60 +VVDLETTGL +E+G + + GE + F + +L P I G Sbjct: 31 NTTFVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISRFSTFVDPGRLIP--PLITNITGI 88 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + A A + ++ RG N FD + + + + Sbjct: 89 SDDDVNGA----PKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHITWP----- 139 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 A L+ L ++A H A+ DA AT F L Sbjct: 140 ---QPTHLCTLVLARTMLDRCAVGSFKLSSLARHFHATTTPTHRALDDALATVTVFHGLL 196 Query: 181 HTAAAH 186 +H Sbjct: 197 EELGSH 202 >UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MZX4_9GAMM Length = 738 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + ++VD+ETTG + EVG++ V GE + + + + G Sbjct: 570 EQPYVIVDVETTGGRKEQHRVTEVGMVKVLNGEIVD-EWQSLINPMRHIPQSITRLTGIS 628 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E+ ++ G+ F N FD + F Sbjct: 629 NEMVSNA----PVFDDVADEIAEFCAGSVFVAHNVNFDYGFFRSEFERLGRRF------- 677 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + + L + L + + N H A+ DA A A F +++ Sbjct: 678 ----HAPKLCTVQMSRKYLPGHSSYSLGKLCAALDIDLENHHRALDDAKAAAHVFRLIQE 733 Query: 182 TAAAH 186 Sbjct: 734 KRQTS 738 >UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=17 Tax=Fusobacterium RepID=A5TTA5_FUSNP Length = 1454 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 15/177 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V D+ETTGL+ T +E+G + + G + + + EI Sbjct: 424 EEEFVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQL-INPGRPIPYHITEITSIT 482 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E + G+ D++ N FD + R Y + Sbjct: 483 DEQVANE----PKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKY--------LNI 530 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + D A + + GL + + LG+ + H A+ D+ ATA F + Sbjct: 531 DLQSSVIDTLQMA--RDLFPDLKKYGLGDLNKTLGLALEKHHRAVDDSQATANMFII 585 >UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive type) n=3 Tax=Lactobacillus delbrueckii RepID=Q049V0_LACDB Length = 1411 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 17/179 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 ++ ++ D+ETTGL +E+G + + GE + F I + + Sbjct: 390 QEFVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHP--LSETTINLTSIT 447 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + AV + D+ + G N FD V P Sbjct: 448 DEMVQAA----DDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYP-------E 496 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L +L LD++ + V + + H A DA AT + L Sbjct: 497 ISQPVVDTLE---VSRLLHPEQSRHTLDSLCRKYNVALEHHHRANQDAEATGYLMFKLL 552 >UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha subunit (Fragment) n=1 Tax=Oribacterium sinus F0268 RepID=C2KW36_9FIRM Length = 821 Score = 176 bits (448), Expect = 3e-43, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 16/178 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 ++ +V DLETTG D +E+G + ++ G+ + + V + ++ Sbjct: 514 LSSTTVVFDLETTGFDPRVNHIIEIGAVKIENGKIIDR-MDVFVNPGVPIPFRITQLTSI 572 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + D+ + N FD V+ + ++PFS Sbjct: 573 DDSMVMDAKG----IEEVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIPFSA---- 624 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + A +L + LD VA+ L + +++ H A+ DA ATA + Sbjct: 625 -------PVIDTVALSRLLLPRLNRFKLDTVAKELKIELLHHHRAVDDAEATARIYLK 675 >UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA Length = 412 Score = 175 bits (446), Expect = 4e-43, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYY 61 +V D ETTGL V + + + G L + P +++ +G Sbjct: 218 TFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRPIPAESIRYHGIT 277 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + V + + ++ N AFD + + + F Sbjct: 278 DDMV----VDKPPAGVVLPQFRSYVADAVLVAHNAAFDLKFLRMREKDMGIRFD------ 327 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L P LD + +R G+ + +RH+A+GDA TA Sbjct: 328 -----IPVLDTMILSNFLDGPDAGHSLDDICDRYGIEITDRHTALGDAMVTAAVLLRQIE 382 Query: 182 TAAAH 186 Sbjct: 383 ALEGR 387 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 175 bits (444), Expect = 8e-43, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 64/185 (34%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYY 61 V D ETTGL+ +++G + V G+ L + ++ ++G Sbjct: 543 TYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGIT 602 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + N AFD + + + F Sbjct: 603 ADMLAG----QPVIEAVLPSFHAFAADTVLVAHNAAFDMRFLQLKEDLTGLRF------- 651 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L L A + + L+A+AERLG+ VV RH+A+GDA TA F L Sbjct: 652 -DQPVLDTLLLSA---VIHPNQDSHRLEAIAERLGITVVGRHTALGDAMVTAEVFLKLVP 707 Query: 182 TAAAH 186 A Sbjct: 708 LLAEK 712 >UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB Length = 688 Score = 175 bits (444), Expect = 9e-43, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 62/186 (33%), Gaps = 19/186 (10%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYE 62 +V D ETTGL V++ L + G L + V P + ++ + Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRVHHISD 553 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A D+ +G N FD + + F Sbjct: 554 DMVQDA----PDIIEAGRRFHDFCQGAVLVAHNAPFDLAFLRLKEKVIGRRF-------- 601 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLR 180 + L + A D + LDA+ ER G +P RH+A+GD ATA F + Sbjct: 602 DNPVLCTVLMSAG---LFDHSGQHTLDALCERFGITIPPEARHTAMGDTVATAEVFVRML 658 Query: 181 HTAAAH 186 A Sbjct: 659 GLLQAK 664 >UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=B4S124_ALTMD Length = 715 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 51/176 (28%), Gaps = 16/176 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 A+ +VVD+ETTG + E+G++ + G+ + + + G Sbjct: 540 AQPYVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDRFQ-TLLNPQRRIPSSITRLTGIS 598 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + + F N FD + ++ F Sbjct: 599 DDMVADA----PLFAEVADHIASFTEDAVFVAHNVNFDYGFIKQEFARLEQSFRR----- 649 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L + + + + H A+ DA A A Sbjct: 650 ------PKMCTVREMRRTHPGLSSYSLANLTKHFHIDMEQHHRALSDAKAAAELLK 699 >UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4KA24_THASP Length = 769 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 17/184 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGYYE 62 V D ETTGL+ ++VG + G+ L + + P++ +I+G Sbjct: 579 YTVFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPERPLAPESAKIHGITS 638 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + N AFD + + + F Sbjct: 639 EML----RGQPTIDKVLPAFHAFAADTVLIAHNAAFDMRFLQLKEEQTGLRF-------- 686 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 H + L A + E L+A+AERLG+ +V RH+A+GDA TA F L Sbjct: 687 DHPVIDTLLLSA---VVHPNQESHRLEAIAERLGLTIVGRHTALGDAIVTAEVFLKLIPL 743 Query: 183 AAAH 186 A Sbjct: 744 LAEK 747 >UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli RepID=DPO3_LACSS Length = 1446 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 69/186 (37%), Gaps = 17/186 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGY 60 + + ++ D+ETTGL +E+ + + GE + F I E+ +A ++ Sbjct: 422 SAEYVIFDVETTGLSAVYDSIIELAAVKMRDGEVVASFDEFIDPERPLSA--FTTQLTSI 479 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + A +++ AG N +FD + + Sbjct: 480 TNEMVHGAK----KEAEVLAMFKEFTGDAVLAGHNVSFDMGFLNAGYERNDIDL------ 529 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + L ++ + LD++ +R + + + H A DA +T + L Sbjct: 530 -IDNPVIDTLE---LSRMLHPEYKNHKLDSLTKRYKINLEHHHRANADAESTGYLLYKLE 585 Query: 181 HTAAAH 186 AA + Sbjct: 586 KEAAEN 591 >UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510268 Length = 581 Score = 173 bits (440), Expect = 3e-42, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 12/182 (6%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++VDLETTG + E+G + GE L + + + P + G Sbjct: 30 TFVIVDLETTGTTAGKSEITEIGAVKTRGGEVLGEFQSLVKPEESVISPFVARLTGITHA 89 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ G N FD + + Sbjct: 90 MVDDA----PSIRSVLPSFLEFCVGAVLVAHNAPFDIGFIRSACEKLDYHWP-------- 137 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D + ++ D L +A G V H A+ DA AT + Sbjct: 138 QPTVLDTVTLSRRVVSRDEVRNHKLSTLAAHFGTEVSPDHRALSDAKATGEVLHRVLERF 197 Query: 184 AA 185 Sbjct: 198 GG 199 >UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11UG6_CYTH3 Length = 449 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG +E+ + D + + + G Sbjct: 3 YSIIDIETTGGHASGNRIIEIAIYKFDGEKITDTYQ-TLINPERRIPVFITSLTGIDTEM 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A E+ D+ R + F N FD T V ++ +MP++ Sbjct: 62 VADA----PVFADVAREITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYN--------- 108 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L L + L + LG+ V NRH A GDA AT + L Sbjct: 109 --LPKLCTVRLSRKIFPGLPSYSLGNLCGSLGIDVQNRHRAAGDAEATVRLLNKLL 162 >UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YUT4_NOCDA Length = 595 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 58/183 (31%), Gaps = 18/183 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 +V+DLETTG + EVG + V GE + F + A+ + G + Sbjct: 26 FVVLDLETTGTSASGSRITEVGAVRVRGGEVVGEFATLVNPGTPIPAN--ITLLTGITQS 83 Query: 64 GLYREALTEQQTAVAWGEVQDWLR---GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + +L N FD+ + + + Sbjct: 84 MVA----SAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPG---- 135 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + D A L T L +A GVPV H A+ DA AT L Sbjct: 136 ----YPVVDTLRLARAVLARGETRNHRLATLAAYFGVPVAPNHRALEDARATVGVLHGLV 191 Query: 181 HTA 183 Sbjct: 192 ERL 194 >UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C525 Length = 529 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 13/183 (7%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VVDLETTGL +E+G + G+++ ++ + G Sbjct: 20 NTTFVVVDLETTGLKAKNDHIIEIGAIKTRGGKTIGTFSSF-IDPGMEIPDHITSLTGIT 78 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + T Q + ++ RG+ + N FD + + + + Sbjct: 79 T----ADVETAPQLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWPS----- 129 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D A L+ L +A +G P H A+ DA AT L Sbjct: 130 ---PSVVDTLTLARRVLDRSQVGSFKLSQLARYVGSPNRPAHRALDDAIATVDVLHYLME 186 Query: 182 TAA 184 A Sbjct: 187 RLA 189 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 172 bits (438), Expect = 4e-42, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 19/179 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + + +V+D+ETTGLD +E+ + ++ G V P + G Sbjct: 2 LPQTYVVLDVETTGLDPARDRIIEIAAVRLEGGNITR-QFQTLVNPGRPIPPAIERLTGI 60 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + D R G N FD + + + L Sbjct: 61 SDAMVREA----PPLPEVLPGLLDLFRDAIPVGHNGTFDLAFLNQAL-GHGWHSPLLDT- 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 A ++ LD +++ L + H A+ D TA + L Sbjct: 115 ------------LALSRILFPCLASHRLDYMSKYLTLEATGHHRALDDVLTTARLLENL 161 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 172 bits (438), Expect = 4e-42, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 19/181 (10%) Query: 1 MAKQLIVVDLETTGLDYD--TALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEI 57 M+K+ +VVDLETTG + ++ + V+ GE L F I ++ P E+ Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKR--EIPPFITEL 58 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G E + + V + L+G F N FD + + Sbjct: 59 TGIDESMVKQA----PLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGY----- 109 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + ++ + ++ + + L +A++ + H A DA ATA F Sbjct: 110 --TEIHCPKVDTVE---LAQILLPTADSYKLRDLAKQHELEHDQPHRADSDALATAELFL 164 Query: 178 M 178 Sbjct: 165 Q 165 >UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7T3_9FIRM Length = 237 Score = 172 bits (438), Expect = 4e-42, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 16/181 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K + VD+ET+G+ +E+G + V G+++ + + P E+ G Sbjct: 1 MVKDYVCVDIETSGIRVKWDKIIEIGAVKVRDGKAVDTFSEL-INPGLKLSPYITELTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + ++ + G N FD + + + + + F + Sbjct: 60 TDEMLKDK----PFIEEVLPRFIEFAGDDVIMGHNIMFDYSFLKQNAINQKLKFDKMG-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + E GL+ + G+ N H A DA T+ +++L Sbjct: 114 ---------IDTLKIARKTLKGLESRGLEYLCNYYGIADENHHRAFNDAEVTSKLYNVLM 164 Query: 181 H 181 Sbjct: 165 E 165 >UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCD0_PARDP Length = 706 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 66/184 (35%), Gaps = 17/184 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITV-EQLAAADPKAMEINGYYE 62 V D ETTGL+ +++G L + G+ L + + P+++ +G + Sbjct: 516 YTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHP 575 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + A + G N AFD + + + F Sbjct: 576 EMVQG----QPRIAEVLPAFHAYASDTVLVGHNVAFDMRFLQLKEAATGLRF-------- 623 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L L + + L+A+A RLGV + RH+A+ DA TA F L Sbjct: 624 DQPVLDTLLLASIAQ---PHEPSHSLEAIAARLGVEITQRHNALSDALVTAEVFLRLLPL 680 Query: 183 AAAH 186 A Sbjct: 681 LKAR 684 >UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM Length = 1010 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 57/184 (30%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTG+ +E+ + V+ G+ + V P A +NG ++ Sbjct: 24 DYVVFDLETTGISSKYDEVIEISAVKVEAGQ-VTGEFSTLVNPGRKIPPAASRVNGITDK 82 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGRV 122 + + G+ + G N FD + R Y Sbjct: 83 MVAGAL----PFSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRKVP------- 131 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + L + + L +AE G+ H A+ D + L Sbjct: 132 DNDYVDTLL---LARAALPELSHHRLVDLAEHYGISAKGAHRALNDCHMNQKVYGKLAEE 188 Query: 183 AAAH 186 A A Sbjct: 189 AEAA 192 >UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C5FA2 Length = 285 Score = 172 bits (436), Expect = 7e-42, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VVD+ETT +E+G + + GE + V K E+ Sbjct: 16 EFVVVDIETTAFSIQKGGRILEIGAVKIKNGEIVD-NFSTLVNPELKIPKKITELTKITN 74 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDS-TIVARQRVTYSMPFSPLTVGR 121 + + +++ + N +FD + T + Sbjct: 75 DMVKDA----PYIGNVLQKFNEFISDSVIVAHNASFDWDRFLKPALATIGIK-------- 122 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 H++ D + + K + L + L VP+ H AI DA ATA CF L+ Sbjct: 123 -SSHKVMDTVSLS--KFTFPDKKKHTLIDLCSYLEVPLEKNHRAIDDAIATAKCFLKLKA 179 Query: 182 TAAAHL 187 A L Sbjct: 180 LNAEKL 185 >UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SPM0_9CAUL Length = 717 Score = 172 bits (436), Expect = 8e-42, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG E+G + + GE + + P E+ G Sbjct: 545 YTVVDIETTGGQSANERVTEIGAVKIRNGEIID-TWQSLINPERRIPPFITELTGISNAM 603 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A + +L+G F N FD ++ + PF Sbjct: 604 VRDA----PRFADIADDFDAFLKGTVFVAHNVNFDYGFLSAEYRRLERPF---------- 649 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 R + A+ + + GL ++ G+ + N H A+ DA A A ++ Sbjct: 650 -RYPKMCTVASMRRHFPGLAAYGLGPLSREFGIELKNHHRALSDAMAAAELLKLINERRL 708 Query: 185 AHL 187 + + Sbjct: 709 SPI 711 >UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma RepID=Q2NJG3_AYWBP Length = 1572 Score = 171 bits (435), Expect = 8e-42, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 16/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTG-ESLYFVPHITVEQLAAADPKAMEINGYYE 62 +V DLETTGL +E+ + + G + F I + I + Sbjct: 480 TYVVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGEFQKFI--DPQQKLTKTITNITNITD 537 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L +Q + + + N +FD + + + P Sbjct: 538 EMLQG----QQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEP------ 587 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A + + + + L +A V + + H A+ DA AT+ F + Sbjct: 588 --KPIIDTMALS-QRYFSNLLKYFSLKRLATVFKVKLEDHHRALADATATSEIFIKMIDQ 644 Query: 183 AA 184 A Sbjct: 645 LA 646 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 171 bits (435), Expect = 8e-42, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 18/182 (9%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEIN 58 M + +++DLETTG +++G++ ++ G+ + F E+ P ++ Sbjct: 1 MKDRFVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDRFSSFFNPER--DIPPFVQQLT 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 E+ + A +V D L+ + F N +FD + + +P Sbjct: 59 NITEQMVADA----PSFAEEAAKVADMLQQSYFVAHNVSFDLQFLQEELHMAGLPPFSG- 113 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + ++ E L +A++L + H A DA TA F Sbjct: 114 ---------PTIDTVELARIVFPTAESYKLGDLAKQLHIDHDQPHQADSDAEVTAKLFIA 164 Query: 179 LR 180 L Sbjct: 165 LL 166 >UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrhizobium RepID=A4YW65_BRASO Length = 737 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 16/178 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VVD+ETTG E+G + V + + H + K +E+ G Sbjct: 560 EQDYVVVDIETTGSWSSGDRITEIGAVKVRNHQLVE-QWHSLINPQRPIPAKIVELTGIT 618 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ F N FD ++ + F Sbjct: 619 NQMVRDA----PVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRF------- 667 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R L + GL + G+ + + H A+ DA A A +++ Sbjct: 668 ----RFPKLCTCVGMRRRYPGHTSYGLGKLCAIYGIELDDHHRALCDARAAAHLLNLI 721 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M++ +V+DLETTG D A +++G + V+ G ++ V+ + P E+ G Sbjct: 1 MSQSFVVIDLETTGNSPDQGAKMIQIGAVKVE-GCTITDRFSTFVDPGCSIPPFITELTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 ++ + ++ ++ G++ N FD + Q T + Sbjct: 60 ITDKDVEGA----PVFREIATDLLAFMEGSSLVAHNVPFDKGFLEAQLETEGLRLPKCCQ 115 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 ++ + E L ++ L + H A DA TA F L Sbjct: 116 F----------DTVELSRVLLPTQESYKLSELSSSLDMDHDRPHRADSDAEITAELFIKL 165 Query: 180 RHTAA 184 H Sbjct: 166 LHKLE 170 >UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A5KMD9_9FIRM Length = 279 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 64/183 (34%), Gaps = 18/183 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 M K I DLETTGLD +E+G L V G+ F+ I ++L + P + G Sbjct: 35 MLKSYIAFDLETTGLDPMNNEIIEIGALKVRDGKVSERFMEFIKPQELIS--PAITGLTG 92 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + D+ + G N FD + +PF + Sbjct: 93 ISNDMVA----SARPARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKMG- 147 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + K E + L A+ E + H A DA ATA + L Sbjct: 148 ----------IDTLKIAKKVHPELESKSLSALCEHYKIENKAAHRAYFDALATAKLYQTL 197 Query: 180 RHT 182 H Sbjct: 198 SHY 200 >UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clostridiales RepID=B8FYI4_DESHD Length = 1447 Score = 170 bits (433), Expect = 1e-41, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 V+DLETTG T E+G++ + G+ + F + E+ A + +E+ + Sbjct: 423 TYCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQFGCFVNPEKPIPA--RVVEVTNITD 480 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + ++ +++ G+ N FD + F Sbjct: 481 DMVRDA----ETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFD------- 529 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + K + L +A+ LG+ V H A+ D T F+++ Sbjct: 530 ----YTYLDTLSLAKELFPDYKTYKLGRIAKNLGIKVEVAHRALDDVGTTVKVFNIMVDM 585 Query: 183 A 183 Sbjct: 586 L 586 >UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Proteobacteria RepID=DPO3E_HAEIN Length = 256 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 19/183 (10%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D ETTG++ Y+ +E+G + + HI ++ DP A++++G Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVHGI 67 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + + D++ G N FD + + ++ + Sbjct: 68 TDEMLADK----PEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDI- 122 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + D A + P + LDA+ +RLG+ R H A+ DA A + M Sbjct: 123 ----CLVTDTLQMARQ---MYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLM 175 Query: 179 LRH 181 + Sbjct: 176 MTG 178 >UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=C5CGL7_KOSOT Length = 1430 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 60/184 (32%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEING 59 M +V DLETTGLD +E+G + + E + F + E+ K I G Sbjct: 415 MNSIYVVFDLETTGLDPSADEIIEIGAVKLKGTEVIGEFSSFVKPER--NLSEKVTRITG 472 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 +R L + + ++ + + N FD V Sbjct: 473 ISDRELEDA----PSLSEVLPKFLEFCKDSVLVAHNATFDYRFVRNAVKQL--------Y 520 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 W D A + L L D V +RL + H A DA TA F L Sbjct: 521 NEDWKLPYIDTLALSKSLLKSKSYSL---DNVVKRLKLGDFEHHRASEDARITAEVFKKL 577 Query: 180 RHTA 183 A Sbjct: 578 LSMA 581 >UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria RepID=B1Y7R5_LEPCP Length = 731 Score = 170 bits (431), Expect = 2e-41, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 64/183 (34%), Gaps = 17/183 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYYE 62 V D ETTGL+ D +++G + G+ + P A + I+G Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQRPIPPAGIPIHGIKP 600 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + N AFD + ++ + F Sbjct: 601 DMVAG----QPTIDHVLPAFHAFAQDTVLVAHNAAFDMRFLQLKQDRTGLVF-------- 648 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L L A + E L+A+AER + VV RH+A+GDA TA F L Sbjct: 649 DQPVLDTLLLSA---VVHPNQESHRLEAIAERFSITVVGRHTALGDAMVTAEVFVRLIPL 705 Query: 183 AAA 185 A Sbjct: 706 LHA 708 >UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gammaproteobacteria RepID=Q21J48_SACD2 Length = 238 Score = 170 bits (431), Expect = 3e-41, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 14/179 (7%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTGL+ +E+G + + + H ++ D A+E++G Sbjct: 4 IVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPEREIDEGAIEVHGITNEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E ++ G N FD + + + Sbjct: 64 LADK----PVFKDIADEFMAFVDGAELVIHNAPFDVGFLNHEFNLLG----RGSTVINDR 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 + D A A K P + LDA+ +R G R H A+ DA A + ++ Sbjct: 116 CSILDTLALARNK---HPGQKNNLDALCKRYGADNSARDLHGALLDAEILADVYLLMTG 171 >UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAB0_9FIRM Length = 225 Score = 169 bits (430), Expect = 3e-41, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 64/180 (35%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ETTGLD + +E+G ++V G F +T E + P + G + Sbjct: 57 YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGRFQTFLTPEPYQSLSPFITNLTGITDS 116 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++D+L G T G N FD + G Sbjct: 117 DL----VGAPTFREILPRLRDFLGGYTLVGHNVNFDINFL--------YDRIYRETGEHL 164 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 ++ D K + L+A+ + G+ N H A+ D T D L Sbjct: 165 NNPYLDTK--KLAKTVVPGLSHYSLEALCKHFGI-AGNHHRAVDDCELTEKVLDALWRLK 221 >UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3L4_MAGSM Length = 237 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 64/188 (34%), Gaps = 17/188 (9%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++LIV+D ETTG D +E+G + + V A +++G Sbjct: 2 ERLIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGD-ERQWYVNPEREIPADATKVHGIT 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + E ++ ++ N FD + + + Sbjct: 61 DADVAN----SPKFKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRLNKRL------V 110 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + R D A K P LDA+ +RLGV R H A+ DA A + L Sbjct: 111 MPMERAIDTIPLARRKF---PGSTVNLDALCKRLGVDNSGRTFHGALLDAHLLAEVYVEL 167 Query: 180 RHTAAAHL 187 L Sbjct: 168 MGGNQFSL 175 >UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cellular organisms RepID=Q1LGD6_RALME Length = 530 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 17/185 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ VDLETTG D E+G++ V + + + L + P + G + Sbjct: 33 RPIVFVDLETTGADAQRDRITEIGVVEVGPDGIQEWDTLV--DPLTSIPPFVQGLTGITD 90 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A+ + + L+G F N FD + + + F Sbjct: 91 EMV----RGQPTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTF-------- 138 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R L + E GLDA+ R G+ RH A+ DA + + Sbjct: 139 ---RADVLCTLRLSRSLFPSVERHGLDALIARFGLTPKGRHRALADAELLWQFWQKIHEI 195 Query: 183 AAAHL 187 + L Sbjct: 196 YSVDL 200 >UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like domain n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B5Z3_METEA Length = 754 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 64/184 (34%), Gaps = 18/184 (9%) Query: 3 KQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V+D ETTGL + +EVG + + G + + I G Sbjct: 542 ERFVVIDFETTGLSPNNGDRVIEVGAVEIVDGRIGRRFQSL-ANPGFPVSARITAITGIS 600 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + A EV ++ G T N FD + + Sbjct: 601 NAML----VDAPPLAEVIREVSAFIEGATLVAHNAGFDRRFLQAEMERLG---------- 646 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDMLR 180 +W R L GK L +AE GV + + H A+ DA ATA F ++R Sbjct: 647 LWDDREM-LCTMRLGKRAYPGLGSYKLAFLAEHAGVALPDAMHRALADAMATAELFLVMR 705 Query: 181 HTAA 184 A Sbjct: 706 EREA 709 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 168 bits (427), Expect = 6e-41, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 57/178 (32%), Gaps = 16/178 (8%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+DLETTG +E+G++ ++ E + P + G + Sbjct: 3 RFVVIDLETTGHAPSKNDKIIEIGMVIIEGDEIIDTKTTF-FNPGQPIPPFITNLTGISD 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + ++ L + N FD + + + R+ Sbjct: 62 DDVADA----PLFTEKALSIKSILEDSYIIAHNVNFDLGFLNAELKENGID-------RL 110 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L + ++ L +++ + + H A+ DA TA F L Sbjct: 111 HNQVLDTVE---LSRILFPTAPGYKLSQLSDHFNLQHDDPHRALSDAYVTAKLFQKLM 165 >UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VLC1_9ACTO Length = 615 Score = 168 bits (426), Expect = 8e-41, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 59/182 (32%), Gaps = 15/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 +V DLETTG TA E G + V GE + T+ + + P + G + Sbjct: 51 TFVVFDLETTGTGPTTAEITEFGAVKVRGGEVV--AEFATLVRASTGIPPLITVLTGITD 108 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L T A ++++G N FD + + P Sbjct: 109 AMLA----TAPPLAEVLPAFLEFIQGTVLVAHNAGFDLSFLKAACERVGYP------VPT 158 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 W H D A A + D + L ++A H A+ DA AT L Sbjct: 159 WEH--LDTARLARRIVTRDESPNNKLSSLARLFRARTEPCHRALADARATVDVLHGLFER 216 Query: 183 AA 184 Sbjct: 217 LG 218 >UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Betaproteobacteria RepID=Q0AE35_NITEC Length = 234 Score = 168 bits (426), Expect = 9e-41, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 15/187 (8%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D ETTGLD VE+ + V S H + +D A+ ++G Sbjct: 2 RYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNPGRESDEGALRVHGLSR 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + E +++ N FD + R+ L Sbjct: 62 EFLQDK----PAFQEICSEFLEFIEDAEILIHNAPFDVGFINRELG-----LIRLEPMHN 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLR 180 + ++ D A + P + LDA+ ER + +R H A+ DA A + + Sbjct: 113 YCLQIVDTLMLAK---ELHPGKRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMT 169 Query: 181 HTAAAHL 187 + L Sbjct: 170 RGQESLL 176 >UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15TC4_PSEA6 Length = 769 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 16/181 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VVD+ETTG E+G + V + + + + G Sbjct: 602 QPYVVVDVETTGGCKPGHRITEIGAVKVIDSKVVD-SWSSLINPERRVPHFITRLTGISN 660 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +++ +++ F N FD + FS Sbjct: 661 DMVEDA----PLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAFS------- 709 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L + + L +++ G+ + N H A+ DA A A M+ Sbjct: 710 ----MPKLCTVREMRKYYPGSPSYSLGKLSKEYGLSLDNHHRALCDAQAAAELLIMVNEK 765 Query: 183 A 183 Sbjct: 766 K 766 >UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM31_9BACT Length = 1428 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 60/180 (33%), Gaps = 18/180 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTGL+ +E+G + + E L + + E+ +A + G E Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIKMKGSEVLGTYSTFVKPEKELSAM--ITSLTGITED 475 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + E + G N +FD V + G W Sbjct: 476 MLSEA----RPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKH--------FGGDW 523 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 D A A ++ LD V +RL + + H A DA TA A Sbjct: 524 EMPCIDTLALAKSLF---RSKSYSLDNVVKRLKLGHFDHHRAFEDAKVTAEVLKKFVQLA 580 >UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenibacillus RepID=C6D2T0_PAESJ Length = 1437 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 17/186 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 + IV D+ETTGL +E+ + + G+ + F I + ++ Sbjct: 418 TAEYIVFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYH--IQQLTNI 475 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + E D++ + N FD + + MP Sbjct: 476 NDEMVKDA----PELEPKLREFIDFIGDSILVAHNARFDIGFIQANLKSIGMP------- 524 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V + L L + + L+ ++ + V + N H A+ D+ A L Sbjct: 525 DVTNPVLDTLE---LARFLHPTMKNHRLNTLSAKYKVSLDNHHRAVDDSVALGGVLFGLI 581 Query: 181 HTAAAH 186 + AA Sbjct: 582 NDAAER 587 >UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (Modular protein) n=2 Tax=Burkholderiales RepID=B3R8V7_CUPTR Length = 532 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 17/179 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++ ++ VDLETTG D E+G++ V + + ++ + P + G Sbjct: 29 LSRPIVFVDLETTGADAQRDRITEIGVVEVGPDGIVEWETL--LDPGMSIPPFIQRMTGI 86 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + + L+G F N FD + + F Sbjct: 87 SDDMV----RGQPTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTF------ 136 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R L + E GLDA+ R G+ RH A+ DA + + Sbjct: 137 -----RADVLCTVRLSRSLFPSVERHGLDALIARFGLTPKGRHRALADAELLWQFWQKI 190 >UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gammaproteobacteria RepID=Q1QW65_CHRSD Length = 253 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 11/184 (5%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG+D +E+G + V H + DP+A+E++G Sbjct: 4 IVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGITNER 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV-W 123 + E A +++RG N AFD + + +G V Sbjct: 64 VADE----PVFADIADAFWEYIRGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPVAD 119 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 + + D A A + P + LDA+ +R G+ R H A+ DA + + + Sbjct: 120 YCSVLDTLAMA---RKLHPGQRNNLDALCKRYGIDNGRRVLHGALLDAEILSDVYLTMTG 176 Query: 182 TAAA 185 A Sbjct: 177 GQTA 180 >UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAB9_9FIRM Length = 525 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 21/186 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ + D+ETTGLD +EVG + + G ++ + V +A IN Sbjct: 50 KRYVAFDVETTGLDSKKDRIIEVGAILFENGHTVETYSSL-VNPEVKISKEATTINHITN 108 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGN-----TFAGSNPAFDSTIVARQRVTYSMPFSPL 117 + + + E+ +L N FD + +++ + L Sbjct: 109 GMVKKA----PTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQIL 164 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L + + I VA+ + H AI DA Sbjct: 165 C-----------LDTLSLSRKIIPGLSNYKQTTVAKHFNIKNKQEHRAISDAEVCGEILW 213 Query: 178 MLRHTA 183 L Sbjct: 214 KLLSIK 219 >UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acidithiobacillus RepID=B5EMD9_ACIF5 Length = 248 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 18/184 (9%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA + +V+D ETTG+D+ +E+G + + + ++DP+A+ I+G Sbjct: 1 MAVRQVVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQRSSDPEALRIHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + A ++L N FD + + Sbjct: 61 LTDEFLQD----QPGFAEVADAFLEFLGDAELIIHNAPFDLGFLNHELQLAGKAPL---- 112 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + D A A + P + L+++ R V +R H A+ D A + Sbjct: 113 ----RQAVMDTLADARRR---HPGQKNDLNSLCRRYSVENSHRELHGALLDTRILAEVYL 165 Query: 178 MLRH 181 + Sbjct: 166 AMTG 169 >UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCE6_BRAFD Length = 551 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 58/184 (31%), Gaps = 15/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 L+VVDLETTG D E+G + V GE L F + E+ A + + G + Sbjct: 20 TLVVVDLETTGTDPAADAITEIGAVKVRGGEVLGEFRTFVDPERPIPAYIAS--LTGITD 77 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 D+ N FD ++ Q + + Sbjct: 78 ----AAVAEAPSIRTVLPMFLDFAGDAALVAHNARFDIGFLSAQAAACEITWP------- 126 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R+ D A A D L +A +G + H A+ DA AT + Sbjct: 127 -RPRVLDTLALARTVFRRDEVRDHRLSTLARHVGAGITPDHRALSDARATVDVLHAIIER 185 Query: 183 AAAH 186 Sbjct: 186 LGPS 189 >UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEU3_ACHLI Length = 1504 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 V D+ETTG + +E+ V G + + I + Sbjct: 412 YTVFDIETTGFSFTRDKIIEIAAYKVRGGFIAER-FEVLINPEEQLSETTKRITNITDEM 470 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSM---PFSPLTVGR 121 + E ++++G N +FD + + + PF+ + Sbjct: 471 VENEK----TIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLN 526 Query: 122 VWHHRLADLAAYAAGKLNI-------DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + + + + L A+ + V + H AI DA ATA Sbjct: 527 IARYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEAHHRAIYDAYATAE 586 Query: 175 CFDMLRH 181 F + Sbjct: 587 VFLNMLQ 593 >UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacteria RepID=A9KMW9_CLOPH Length = 1527 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 +V D+ETTG +E+G + + G + F I E ++ + Sbjct: 496 TCVVFDIETTGFSSVKDKIIEIGAVKIQHGTIVDRFSTFINPEVPIPYH--IQKLTSITD 553 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + E + G N +FD + ++ ++P + +V Sbjct: 554 EMV----IGSRTIEEILPEFLSFCEGCYLVAHNASFDIGFITKKAEFLNIPLTVTSV--- 606 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ ++ LD VA+ L + + N H A+ DA TA + Sbjct: 607 --------DTVGLARVLLNHLNNFKLDTVAKALSISLENHHRAVDDAGCTAEIYLKFLEM 658 Query: 183 A 183 Sbjct: 659 L 659 >UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus RepID=Q1IXC1_DEIGD Length = 180 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 23/189 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLA-------AADPKAMEI 57 ++V DLETTGL + VE+G L V G + T+ + +A + Sbjct: 3 VVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQRV 62 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + + E D++ + A N FDS+ + + ++P Sbjct: 63 HGISDAMVQDA----PELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGLVWAPP 118 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFC 175 A+ + LD +A+RLG+ RH ++GD TA Sbjct: 119 ----------AEYCTVQLSRRAFPRERTHNLDVLAQRLGLSFAPGGRHRSLGDVQVTAEA 168 Query: 176 FDMLRHTAA 184 F L + Sbjct: 169 FVRLMERLS 177 >UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK59_9BACT Length = 228 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 70/180 (38%), Gaps = 14/180 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 V+D ETTGLD + A + V + V + + F + ++++ + Sbjct: 41 QNAVFSVIDTETTGLDLNDARIINVAAVKVQNFKIIDFYNSF-INPETEIPKESIQWHNI 99 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + +++ + G + FD ++ ++ + Sbjct: 100 TDEMVADK----PTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMM-------DSFSC 148 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ ++ L + Y+ + D E LD + + V RH+A+GDA ATA F + Sbjct: 149 QINNNWLDTMLIYSHAIIKKD--ERYSLDYLLDLYNVTCNGRHTALGDALATAEVFTKMI 206 >UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHD8_9FIRM Length = 269 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 17/187 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAM-EINGYY 61 + I+ D ETTG + + + ++ GE + + P+A+ ++ G Sbjct: 77 RYIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSIPQAVCDLTGIT 136 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + D++ + N FD + + + T Sbjct: 137 DDMVADKCG----ICSVLSDFLDFIGDSVLVAHNAEFDLAFLN-------IKLNWYTQTE 185 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD-MLR 180 +++ + Y G+ LD + V RH+A+GD+ TA F L+ Sbjct: 186 IYNPVIDT---YKLGRALYPQLLSHDLDTLIRHHRVKERPRHTALGDSLMTAEIFLDYLK 242 Query: 181 HTAAAHL 187 + Sbjct: 243 KLEKEEI 249 >UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0N2_9BACE Length = 1390 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 21/187 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 +++ D+ETTGLD + +E+G + + GE F ++ + + +E+ + Sbjct: 368 EVVCFDIETTGLDNRRDVIIEIGAVILRNGEIAETFDTFVSPGRP--LSREIVELTSITD 425 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L A ++ A N FD +A Y +PF + Sbjct: 426 KMLEGA----PSQEEAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTS---- 477 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC---FDML 179 + + + LD VAE L +P H A DA A+ F + Sbjct: 478 -------IDTLILAQNLLPDLGKYKLDIVAEHLRLPPFKHHRADADAGMVAYMLVPFFKM 530 Query: 180 RHTAAAH 186 H Sbjct: 531 LEDLGIH 537 >UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0FNH3_9FIRM Length = 228 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 51/181 (28%), Gaps = 18/181 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 ++ DLETTG +E+ + V +G+ + F + ++ A +N Sbjct: 15 PDYVLFDLETTGTSCIYDEVIEISAVKVRSGKVVEEFSQLVNPKRPIPY--AASMVNHIS 72 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVG 120 + + E E + + G N FD + R Sbjct: 73 DEMVANE----PDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTNDYV 128 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 KL L +AE G+ H A+ D F+ L Sbjct: 129 ----------DTLRVAKLCFPEWRHRRLSDLAEHYGISTRGAHRALTDCKMNQQVFEYLA 178 Query: 181 H 181 Sbjct: 179 K 179 >UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C3RL58_9MOLU Length = 1440 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 17/180 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + DLETTGL E G + + GE + + V + + + Sbjct: 402 TYVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDRLQMF-VNPGKSISSRITNLTSITND 460 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E + ++ N FD + +MP + Sbjct: 461 MVRNE----PTIDALLPRIIEFFDDCILVAHNANFDIGFLNENLRRNNMP-------EIT 509 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRH 181 + + + A + + P + L V V + H A DA F+M+ H Sbjct: 510 NPIID---SLALARAILKPMKSYRLGNVCRSYRVNYDDEVAHRADYDAEVLGDVFNMMLH 566 >UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q83YZ1_PEWBP Length = 1492 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 20/188 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 +V+D+ETTG + + + + G+ + F I + + + Sbjct: 405 YVVLDIETTGFSKTRDRIISIAAVKIQNGKIIEYFDELINPGKDIKISNLIQRLTNISDE 464 Query: 64 GLYREALTEQQTAVAWGEVQDWLRG---NTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + D++R N +FD + + + L Sbjct: 465 ILLNK----PHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLP-- 518 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAFCFD 177 + D A N + L+ + + + + H+A+ DA ATA F Sbjct: 519 ------VIDTLTLAQKYFNKI-LKYFSLEKIVKSFKIKLDSEGQYHNALFDARATALIFL 571 Query: 178 MLRHTAAA 185 + A Sbjct: 572 EMLEQLEA 579 >UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gammaproteobacteria RepID=Q5ZVQ6_LEGPH Length = 251 Score = 166 bits (421), Expect = 4e-40, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 15/183 (8%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +++D ETTG+ + +E+G + + + HI + D A ++G Sbjct: 22 VILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTEF 81 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + E ++ G+ N FD + + + + Sbjct: 82 LQDK----PLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLED-----Y 132 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R+ D A K P + LDA+ +R + NR H A+ DA A+ + + Sbjct: 133 CRILDTLILAREK---HPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGG 189 Query: 183 AAA 185 ++ Sbjct: 190 QSS 192 >UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit family protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FXM2_9RHIZ Length = 466 Score = 166 bits (421), Expect = 4e-40, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 18/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHIT-VEQLAAADPKAMEINGYYER 63 V D ETTGL V++G + + G+ + T V+ + +I+G ++ Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASSKIHGITDK 333 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + A A ++ + + N FD + + R + F Sbjct: 334 MV----MGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAF--------D 381 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFCFDMLRH 181 H + + A + TE LD V ERLG+ + +RH+A+GDA TA + Sbjct: 382 HPIVDTVLVSA---IIFGTTERHMLDVVCERLGIRIEKKDRHTALGDARVTAEAMKRMLP 438 Query: 182 TAAAH 186 A Sbjct: 439 LLEAR 443 >UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CX37_DEIDV Length = 202 Score = 165 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 23/191 (12%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-------AMEI 57 ++V DLETTGL + VE+G L V G+ + + T+ + A + A + Sbjct: 3 VVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQRV 62 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + E +++ + N FD + Q M ++P Sbjct: 63 HGISNEMV----RSAPTIEEVLPEFLEFVGDSAVVAHNVGFDCGFMRAQARRLGMVWAPA 118 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV--NRHSAIGDAAATAFC 175 + + L +AERLG+ RH + GD TA Sbjct: 119 G----------EHCTVQLSRRAFPKERAHNLTVLAERLGLNFAPGGRHRSFGDVQVTAHA 168 Query: 176 FDMLRHTAAAH 186 + L A Sbjct: 169 YVRLLELLATA 179 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 165 bits (420), Expect = 5e-40, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 17/178 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYER 63 VVDLETTG D + ++ G + V G+ + T PK ++ + G Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLVQDGKII--ANFATDVNPNQVVPKQIQSLTGISNT 70 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + +L F N FD +AR+ V P Sbjct: 71 QVQKA----PYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLT------- 119 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + ++ + + L ++E LG+ N H A DA TA +++ Sbjct: 120 ---IPAIDTVELAQIFLPTEKSFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQE 174 >UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBV5_LARHH Length = 493 Score = 165 bits (419), Expect = 5e-40, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 20/178 (11%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++VDLETTG E+GL+ V G + + + Q P E+ G + Sbjct: 4 RPYVIVDLETTGGHITRDRITEIGLVEVSHGVTTRWSQLVNPGQPIP--PFIEEMTGISD 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + L G N FD + + + F+ Sbjct: 62 AMVAEA----PPFAELAPALLARLNGKLLIAHNARFDYGFLKNEFRRLGLTFTT------ 111 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDM 178 L + LD++ R G+ V RH A+GDA A + F Sbjct: 112 -----DPLCTVKLSRRLYPQHAKHSLDSLIARHGIDVPPGMRHRALGDAEA-VYVFLQ 163 >UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0B3W0_BRUME Length = 234 Score = 165 bits (419), Expect = 5e-40, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 19/186 (10%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTG--ESLYFVPHITVEQLAAADPKAMEINGYYER 63 IV D ETTGL+ +E+G + + F I Q P A+ ++G Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINP-QGRQVHPDALAVHGISNE 62 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L L + A E +++ G N FD + + L + Sbjct: 63 QL----LDKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELAR-------LDQAEIT 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 + D A A K P LDA+ +R G+ +R H A+ DA A + L Sbjct: 112 SEHIVDTLALARRK---HPIGPNSLDALCKRYGIDNSHRTLHGALLDAQILAEVYIELIG 168 Query: 182 TAAAHL 187 L Sbjct: 169 GKQTAL 174 >UniRef50_Q48KX3 DNA polymerase III, epsilon subunit n=35 Tax=Proteobacteria RepID=Q48KX3_PSE14 Length = 259 Score = 165 bits (419), Expect = 6e-40, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 13/179 (7%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG+ D +E+G + + H+ ++ +D A+ ++G Sbjct: 11 IVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITNEF 70 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + A E ++++G N AFD + + H Sbjct: 71 L----VGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQ---H 123 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRH 181 + D A + P + LDA+ +R GV R H A+ D+ A + + Sbjct: 124 CSILDTLMMARER---HPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTG 179 >UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alphaproteobacteria RepID=B5ZV55_RHILW Length = 245 Score = 165 bits (419), Expect = 7e-40, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYERG 64 I+ D ETTGLD +E+G + + V HI + P A+ ++G + Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGITDEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A E+ + + N FD + + +P + Sbjct: 64 LKDKK----PFAEVAEEILTFFGDAKWIAHNATFDMGFINAELARIGLP-------PILP 112 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R+ D + A K + P LDA+ R G+ +R H A+ D+ A + + Sbjct: 113 ERVLDTLSMARRKHPMGP---NSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGG 169 Query: 183 AAAHL 187 A Sbjct: 170 RQAAF 174 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 165 bits (418), Expect = 7e-40, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 15/183 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D+ETTGL +E+G + + G + + V + + G + Sbjct: 84 RSFVALDVETTGLRPARHRIIEIGAVRYEDGCCVERFS-VLVNPHRRLPVYIVRLTGIRD 142 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L LT + +L +T G N FD + + G + Sbjct: 143 EDL----LTAPSFVDVAAAFRVFLGESTVIGYNVGFDLDFLNAELRRIGQ-------GPL 191 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + L L + + LDA+ +G+ RH A+ DA ATA + L Sbjct: 192 PNPALDVLP---LARALLTANGRYDLDAICRSIGLARGTRHRALPDAEATAVLYLHLVER 248 Query: 183 AAA 185 A Sbjct: 249 AEQ 251 >UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIM3_PETMO Length = 1388 Score = 165 bits (418), Expect = 7e-40, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 57/181 (31%), Gaps = 18/181 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 + +V DLETTGL+ +E+G + + + + F + + + G Sbjct: 381 EFVVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSKFHRLVKPRKPVS--NFTSNFTGITN 438 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L E + ++ G N FD + Sbjct: 439 QMLEVEK----PIEEVLPQFLSFIEGAVLVAHNAIFDYRFIREWVRRV--------YNEH 486 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A + L + + GL V E L + H A DA TA F L Sbjct: 487 FEQTYIDTVALSKSLLTL---KSYGLAKVVEELKLGSFEHHRAHEDANITALVFLKLIEM 543 Query: 183 A 183 A Sbjct: 544 A 544 >UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=Actinomycetales RepID=Y2191_MYCTU Length = 645 Score = 165 bits (418), Expect = 8e-40, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 52/187 (27%), Gaps = 19/187 (10%) Query: 4 QLIVVDLETTGLDYDT------ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 +VVDLETTG E+G + V G L V + P+ + + Sbjct: 42 TFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVL-GEFATLVNPQHSIPPQIVRL 100 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + ++ + N FD + + + Sbjct: 101 TGITTAMVGNA----PTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWP-- 154 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 ++ A L+ D L A+A V H A+ DA AT Sbjct: 155 ------QPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLH 208 Query: 178 MLRHTAA 184 L Sbjct: 209 ALIERVG 215 >UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MME8_9FIRM Length = 1605 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 18/178 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 +IV D+ETTGL E+G + + E + F + ++ E+ G + Sbjct: 590 DIIVFDIETTGLHPANERITEIGAVKLRNMEIVERFSTFVNPMMPIPSN--ITELTGITD 647 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + VA + + + N FD + + F Sbjct: 648 DMVADA----PTEDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAAARMEKSF-------- 695 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + K + + LD +A+ + + H A+ DA + + Sbjct: 696 DNPVVDT---LSIAKAALKGIKNYKLDTIAKYFKLGDFDHHRAVADAEMLCMIYMHIV 750 >UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococcus faecium DO RepID=UPI0001BCC2A4 Length = 663 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 15/172 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D+ETTGL +E+ + + G + ++ +++ G + Sbjct: 426 TYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEF-IDPGHPLSRTTVDLTGITD- 483 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++ + N AFD + Y +P Sbjct: 484 ---GMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIP-------EAA 533 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFC 175 + + L + + GL ++++ GV + H AI DA AT Sbjct: 534 NPVIDTLE---LARYLYPQFKRFGLGVLSKKFGVSLEQHHRAIYDAEATGHL 582 >UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS5_PARDP Length = 659 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 62/185 (33%), Gaps = 17/185 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D ETTGLD V++ L + G V+ P + ++G + Sbjct: 452 TCVVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITDA 511 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A + N FD + R F Sbjct: 512 MVAGA----PDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHF--------D 559 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLRH 181 + L + A + + LDA+ ERLG +P RH+A+GDA ATA + L Sbjct: 560 NQVLDTVLLSA---MLWGQSAPHSLDALTERLGIVIPPEARHTAMGDARATAEAYLRLIA 616 Query: 182 TAAAH 186 A Sbjct: 617 ALEAK 621 >UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFC5_9ACTN Length = 291 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 14/178 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VVD+ETTGL+ + +E+ + V G V ++ G Sbjct: 127 EYVVVDIETTGLNPNKDEIIELAAIRVRGGRETD-AFQCLVRCGGELSDAIAKLTGLSHS 185 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L E L A +++ + N FD + Sbjct: 186 RLMAEGLI---LENALMNFLEFVSDDLIVAHNAEFDIGFIQSACEELDWDDFDNDY---- 238 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L A + + L ++AERL + H A+ D T L Sbjct: 239 ------LDTLALARKKLPQISDHRLSSLAERLHLENRQPHRALSDCRLTHCLLVKLNE 290 >UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Betaproteobacteria RepID=Q21VB4_RHOFD Length = 476 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +++DLETTG + E+ + ++ G+ + V + P + G Sbjct: 1 MLPCYVLLDLETTGGNPVHDRITEIAAVRIENGQEVAR-WSTLVNPGCSISPFIQHLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + L G N FD + + + Sbjct: 60 SNAMVRGA----PGFETVAQHLLALLDGAVLVAHNVRFDHGFLLNELARLDVAL------ 109 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 R+ L +L + GLDA+ +R G+ + RH A+GD + R Sbjct: 110 -----RVKTLCTVRLSRLLYPQHKGHGLDAIMQRHGIRTLERHRAMGDVEVMQAWLQIAR 164 Query: 181 HTAAA 185 A Sbjct: 165 QEHGA 169 >UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function n=3 Tax=Proteobacteria RepID=Q3IIS2_PSEHT Length = 237 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 14/184 (7%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG+D +E+G + + H+ + ++ +A++++G Sbjct: 1 MARRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRNSEEEAIDVHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E D+++G N FD + + + + Sbjct: 61 ITNEFLRDK----PLFHQIAQEFFDYIKGAELVIHNAPFDIGHMDNEFSLLNQGYPKTAT 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 ++ D A ++ P + LDA+ R V R H A+ D+ A + Sbjct: 117 F----CQVLDTLKMA---RDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYL 169 Query: 178 MLRH 181 + Sbjct: 170 AMTG 173 >UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC6_9FIRM Length = 226 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 16/185 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + ++ DLETTG+ +E+ + V G+ + V A +N + Sbjct: 15 RDYVLYDLETTGISSLYDEVIEISAVKVRNGKIVD-EFSELVNPGRPIPYAASSVNNISD 73 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + E + + AG N FD + R Y Sbjct: 74 KMVENA----RSFEKVLPEFLAFAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDY-- 127 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + A KL + L +AE G+ H A+ D F+++ Sbjct: 128 --------IDTLAIAKLCFPEWKHRKLSDLAEHYGISTKGAHRALADCRMNQQVFELMAK 179 Query: 182 TAAAH 186 + Sbjct: 180 ESGGT 184 >UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5W2_RUMGN Length = 219 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 16/181 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 V DLETTG+ + +E+ + V G + V +A ++NG + Sbjct: 13 PDYTVFDLETTGISANMDDIIEISAVKVKGG-IVQDTFSTLVNPGRHIPAQATKVNGITD 71 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTVGR 121 + + A E ++ + G N FD + R+ Sbjct: 72 QMVSEA----PLIREAMTEFLRFVGEDILVGHNIQSFDMKFIYREVEELFQE-------T 120 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 V + + L + + + L +AE G+ H A+ D CF+ + Sbjct: 121 VSNDFIDTLYM---ARKCLPELKHHRLTDLAEHFGISSKGAHRALNDCVMNQKCFEEMAK 177 Query: 182 T 182 Sbjct: 178 L 178 >UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostridium tetani RepID=Q895Z5_CLOTE Length = 380 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 16/174 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+DLETTGL T +E+ + +G+ + + + +A EIN Sbjct: 83 EFVVIDLETTGLYPVTDKIIEITAIKYKSGQIVE-KYNTLINPKINIPKRATEINNITNN 141 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + E+ +++ N +FD + + + Sbjct: 142 MV----KDSPVIEDVLPELLKFIKEYPLVAHNASFDIKFLNANLALINREIKNVA----- 192 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 + + L + E L + N H A+ D TA + Sbjct: 193 ------IDTLQLSRAMYTFLPNHKLTTIKEHLCISEDNSHRALPDCITTAEIYL 240 >UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A7U0_THEAQ Length = 627 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 21/177 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYER 63 DLETTGLD + +G +++ L + V+ + E++G Sbjct: 443 YTAFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTWE 502 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + +L G+ N AFD + + + Sbjct: 503 MLKDK----PKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRK--------------VGID 544 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L D A L + L+ +AER GVPV+ RH+A+GDA TA + + Sbjct: 545 QPPLVDTLLLAH--LLFPDLKDHRLERLAERFGVPVLGRHTALGDALMTAEVYARMI 599 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 21/177 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYER 63 + +DLET+GLD +E+GL+ + G+ + T+ + P K + G + Sbjct: 4 FVALDLETSGLDCLQDEIIEIGLVKMVDGKEIDS--FSTLIRPKGILPVKIKRLTGIKDH 61 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + ++ G N FD ++ + Sbjct: 62 ELQDA----PKLQEVLPVILQFIADLPLVGHNVKFDYDFLSTAVQ-----------SPLA 106 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L K + L + LG+ + N+H A+ DA A L Sbjct: 107 NPLYDTLE---LSKYLMPGASNHRLGYLCSYLGIDIPNQHRALDDARGAAMLLIHLL 160 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 65/178 (36%), Gaps = 17/178 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 + + +D+ETTGL+ + +++ + E + +++ + PK +E + Sbjct: 23 EFVAIDIETTGLNSEWDEIIQIAGMRFKGEEVV--NQFVSLVKPKGKVPKFIEHLTHISP 80 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L T + +++ + G N FD + + V + Sbjct: 81 QEL----KTAPPIKEVLKDFCNFIGDSILVGHNIGFDFNFLNQFIVDNG-------GFPI 129 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + G++ + T L + G+ ++N H A DA AT F+ L Sbjct: 130 SNMHWDTAE---IGRIYLPFTTDHKLSTLVSFFGIELMNAHQADADALATGKLFNALT 184 >UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FIG6_FLAJ1 Length = 459 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 60/180 (33%), Gaps = 16/180 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +VD+ETTG + + E+ ++ + G+++ V P + G Sbjct: 3 NQEYAIVDIETTGGNASGSRITEIAII-IHDGKNVLDRYETLVNPEQDIPPSIFGLTGIN 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + +V + L F N FD + V Q +S Sbjct: 62 NEMVANA----PIFDDISEKVLEMLTDRIFVAHNVNFDYSFVHHQLEQAGFKWSAKK--- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L A + L + L + + NRH A GDA ATA F +L Sbjct: 115 --------LCTVRAARKIKPGLGSYSLGNLCNSLNISLENRHRAGGDADATAILFSLLLE 166 >UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IIU0_PSEHT Length = 730 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 16/180 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VVDLETTG E+GL+ V G+ + V + G Sbjct: 564 NRIYSVVDLETTGALKGGNKITEIGLVKVQHGKVID-TWTTLVNPQRHIPGFITSLTGIS 622 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + L G+ F N FD + ++ +PF Sbjct: 623 DSMVSNA----PVFADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVPFK------ 672 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + L + + L +++ + + + H A+ DA ATA +++ Sbjct: 673 -----MPKLCTVVESRKAFAGLKSYSLGNLSKHFNLNLTSHHRALADATATAQLLLLIQK 727 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 16/180 (8%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V+D+ETTG +++ + ++ G+ + + ++ G Sbjct: 4 QRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITERFSK-YINPNKSIPAFIEQLTGIS 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + E Q EV L G F N FD V + V Sbjct: 63 NQMVENE----QPFEAVAEEVFQLLDGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEV-- 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L ++ E L ++E L + H A DA T F + Sbjct: 117 --------LDTVELSRIVFPGFEGYKLTELSEELQLRHDQPHRADSDAEVTGLIFLEILE 168 >UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU82_9GAMM Length = 528 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 16/176 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++++++DLETTG +E+GLL ++ G+ L V+ P ++ G Sbjct: 22 EKMVLLDLETTGGKATHHRIIEIGLLVIEQGKVLERWQSF-VDPETVLPPFIQKLTGIAP 80 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + +L T N FD + + + ++ Sbjct: 81 SMLRGA----PLFSEVAETLLTYLNDRTLVAHNARFDYGFLKNEFQRIGISYNAKP---- 132 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 L + + + GLD + +R +P+ NRH A+ DA F Sbjct: 133 -------LCSVKFSRSLYPQFKRHGLDQIIKRFQLPIENRHRALDDAEMIQRFFLK 181 >UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rickettsia RepID=DPO3E_RICBR Length = 229 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 14/185 (7%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D ETTGLD VE+G + + H + +A I+G Sbjct: 7 IILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPFEAYRIHGISGEF 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + +++ + N FD + + + + Sbjct: 67 LKDK----PLFHTIADDFLEFIADSKLVIHNAPFDVKFLNHELSLL----KRAEIKLLEL 118 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 D A P LDA+ +R V R H A+ DAA A + L Sbjct: 119 EHAIDTLVMARSMF---PGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTGG 175 Query: 183 AAAHL 187 + Sbjct: 176 RQSAF 180 >UniRef50_C7G8J4 Putative DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8J4_9FIRM Length = 235 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 68/180 (37%), Gaps = 16/180 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +V+DLE TGL+ T +EVG + V +++ I Q K E+ G E Sbjct: 2 QDYVVIDLEMTGLNAKTDHILEVGAVRVRNHQAVDKFGAILC-QNVKIPEKVTELTGITE 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E A + +++ + G N FD + + V ++MP V Sbjct: 61 AMVQGGMEKE----EAMRQFFEFIGEDIIVGQNVIFDYGFLKQWAVNHNMPLERSAV--- 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + + L+++ GV N H A DA T ++ LR Sbjct: 114 --------DTLKLARKFLPKEQKKDLESLCAYFGVKRENAHRAFDDAYETWQIYEALRER 165 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 162 bits (411), Expect = 6e-39, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 18/185 (9%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEINGY 60 ++ +VVDLETTG ++ + V+ E F + E+ P E+ G Sbjct: 2 QRYVVVDLETTGNSAKKGDRIIQFSAVVVEGREIKTQFTSFVNPEKPVP--PFISELTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + + + L + F N FD + ++ P Sbjct: 60 DNGMLEEA----PVFSEIAPRIMEILEDSIFVAHNVLFDLPFLQQELKAAGFPPFRG--- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L ++ L +A+ L + H A DA TA Sbjct: 113 -------PSLDTVEFSRIAFPTLNSYKLGDLADSLSLYHERPHRADSDAFVTAKLLLACM 165 Query: 181 HTAAA 185 A+ Sbjct: 166 EKCAS 170 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 18/185 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 + + +DLETTG+D +EVG + V G F + +D + + G Sbjct: 26 RTFVGLDLETTGVDSRVDRIIEVGAVRVVDGRVADTFESFVNPGCPIPSD--IVHLTGIS 83 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQR-VTYSMPFSPLTVG 120 + + + +++ G+ + FD+ + + V Sbjct: 84 DADVAGA----PTIDEVLPRIIEFIGGSPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGVF 139 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L A +P H A DA A + F L Sbjct: 140 ----------DTLPLTRALLPRLPNHRLATAARFFDIPTGRSHRATDDARAVSDLFLALL 189 Query: 181 HTAAA 185 Sbjct: 190 GVLDQ 194 >UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIT4_RHOM4 Length = 616 Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 17/172 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 V D ETTGL + + +G + + G + ++ ++G Sbjct: 422 YTVFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPRRPISLDSVRVHGIQP 481 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + R G N AFD + ++ + F Sbjct: 482 VLLQDK----PPIEEVLPRFYRFARDTVLVGHNVAFDLKFIRQKEKALGLRF-------- 529 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 L + + + GLD +A G+ V RHSA+GDA TA Sbjct: 530 DQPVLDTML---LAAVVDPERQHYGLDELAAAFGIEPVGRHSALGDALITAE 578 >UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISI0_RHOCS Length = 699 Score = 162 bits (410), Expect = 7e-39, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 17/183 (9%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYYE 62 +V D ETTGL+ V + + + G L T+ A P A I+G + Sbjct: 506 YVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGITD 565 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + ++ N AFD + ++ + F Sbjct: 566 AMVAEA----PRAEAVLPPFRAFVGDAVLVAHNAAFDLKFLRLKQRAAGVRFDG------ 615 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + LD +A RLG+ +V+RHSA+GD+ TA F L Sbjct: 616 -----PVLDTMILSRQIQGDHGEHSLDGLAARLGIGLVDRHSAMGDSLMTAAIFLRLMDM 670 Query: 183 AAA 185 Sbjct: 671 LET 673 >UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostridiales RepID=C7H779_9FIRM Length = 1417 Score = 162 bits (410), Expect = 7e-39, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 53/185 (28%), Gaps = 19/185 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 + V D ETTGLD E+G + V GE + F + + PK E+ G Sbjct: 396 EFCVFDTETTGLDPGVEYLTEIGAVIVRNGEVVEEFDTFVKPGKPIT--PKITELTGITN 453 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGR 121 + A + G N AFD + + F Sbjct: 454 EMVADA----PGEKEALEAFLRFADGRILVAHNAHAFDIRFLKAAAKRSGISFE------ 503 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D A + + L +P H A D+AA F ++ Sbjct: 504 ---PTYIDTLTMAQA--MYPGLHNYKQGTINKHLELPSYEAHRACEDSAALGRIFCVMLS 558 Query: 182 TAAAH 186 A Sbjct: 559 DLAEK 563 >UniRef50_Q2VYH6 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease n=93 Tax=Bacteria RepID=Q2VYH6_MAGSA Length = 257 Score = 162 bits (410), Expect = 8e-39, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 59/185 (31%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG D VE+G + + V H +A +++G Sbjct: 31 IVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPERDMPEEAFKVHGLSADF 90 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A + +++ N FD + + P + Sbjct: 91 LSDK----PLFAEIVADFLEFIGDVPLVIHNAEFDMRFINAELTRLGFP-------PLPM 139 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R D A + P LDA+ R + +R H A+ D+ A + L Sbjct: 140 SRSIDTVMMARKRF---PGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLIGG 196 Query: 183 AAAHL 187 L Sbjct: 197 RQPGL 201 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 16/170 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + +D+ETTG + +EV + + G + + ++ + + G + Sbjct: 4 RSFVAIDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRL-IDPGCPVPQRIQHLTGIHP 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + ++ +L N FD + + Sbjct: 63 AMLAGK----PRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSY--- 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 ++ + L +AE LG+P+ + H A DA A Sbjct: 116 --------DTAELARVALPLARNHRLATLAELLGLPLEHHHRAEDDARAC 157 >UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1K0_9GAMM Length = 488 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 16/174 (9%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 +++D ETTG E+ L+ V+ G + + L P + G + + Sbjct: 12 VILDCETTGGRASRDRLTEIALIEVEDGHVVKR-WQTLLNPLRPIPPWITRLTGITDATV 70 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHH 125 E+ L G N FD + + + Sbjct: 71 ADA----PTFDEIADELFACLDGKVIVAHNARFDYSFLRQSFQRCGYTLGNK-------- 118 Query: 126 RLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 L + + GLD + ERLG+ + NRH A+ D F+ + Sbjct: 119 ---TLCSVKLSRQLFPEHRSHGLDRIIERLGLTIDNRHRAMADTEVLLAFFEHI 169 >UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0P1Y1_9CLOT Length = 235 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 16/179 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K + DLETTGL D+ +E+G + + G+ + + + + G Sbjct: 2 KDYVAFDLETTGLSPDSDQIIEIGAVKIRDGKI-SGKYNCIIHPEIEVSDFIINLTGISR 60 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + E ++ G N FD + ++ PF V Sbjct: 61 DMLRKGI----PLKEGVEEFLEFSGDLPILGHNVMFDYKFMKMAAASFKYPFEKTGV--- 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + E + L+ + H A DA ATA F+ ++ Sbjct: 114 --------DTLKVARKLLTGLENKKLETLCAHYHYVNQAAHRAYDDALATAVVFEQMKK 164 >UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB Length = 484 Score = 161 bits (409), Expect = 9e-39, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 64/185 (34%), Gaps = 18/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYYER 63 V D ETTGL V++G + V G + T+ P+A ++G Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVSTA 336 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A A E + N FD + R + W Sbjct: 337 MVQGA----PDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLA---------W 383 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLRH 181 H + D +A + + LDA+ ERL + + RH+A+GDA ATA + Sbjct: 384 DHPILDTVLLSA--VLFGASVPHTLDALCERLDITIPPALRHTALGDAQATACALVQMIP 441 Query: 182 TAAAH 186 A Sbjct: 442 MLQAR 446 >UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYA8_9GAMM Length = 595 Score = 161 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 16/187 (8%) Query: 2 AKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A + +++D ETTG + + +EVG++ + H+ + + + ++G Sbjct: 364 ANRQLILDTETTGFEAQNGDRIIEVGIVEMINRRFTGEKLHVYINPKIEMGEEVIRVHGI 423 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + D+L+G N FD + + + +P Sbjct: 424 HNAFLNDM----PVFEQVGEAIYDFLQGAELIAHNAGFDMSFLQAEFARLGLPDI----- 474 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + + A K + LDA+ +RL V +R H A+ DA A + Sbjct: 475 ---NQTVTVTDSLAIAKRMF-AGQRNTLDALVKRLNVGKQDRTFHGALLDAEILAEVYLA 530 Query: 179 LRHTAAA 185 + A Sbjct: 531 MTGGQVA 537 >UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF57_9CLOT Length = 319 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 15/177 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+DLETTG D +E+G L + GE + +T + D +++ G Sbjct: 21 DYVVIDLETTGYDPHRDEIIELGALRIHEGEVVESFSSLT-KPQRDLDDYIIQLTGISNE 79 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + + D++ + G N FD + + S+ + + Sbjct: 80 MLA----SAPELSDVFPRYLDFIGDSIVVGHNVHFDVNFIYDTCIKESLKLFTNDLVDL- 134 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L V+ + V H ++ D T CF+ R Sbjct: 135 ---------LWLSRKLLPDLTSHKLCRVSSHFNICVEGMHRSLFDCKTTFECFEKCR 182 >UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidetes RepID=A0LZ46_GRAFK Length = 457 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 18/177 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 ++D+ETTG Y+ E+ + D + + F+ + EQ P + + G Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGQKVVDQFISLVNPEQPIQ--PFVVNLTGINND 59 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + N FD I+ + + + Sbjct: 60 MLKNA----PKFYEVAKRIVEITEDCILVAHNAKFDYRILRTEFRRLGFEYERKS----- 110 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L K I L + LG+P+ +RH A GDA AT F ML Sbjct: 111 ------LCTVELSKKLIPGLPSYSLGKLVRSLGIPLSDRHRAAGDAQATIKLFKMLL 161 >UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Treponema RepID=Q73L66_TREDE Length = 217 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 15/174 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 D ETTG + VE+G + D + ++ ++ P+A ++N + Sbjct: 16 FTAFDTETTGTEAKAERVVEIGCVKFDIRGVIARY-NVLIDPEKPMPPEAGKVNQITDEM 74 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + A + D++R N +FD + + ++ + Sbjct: 75 LAG----QPKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCG-------KTKLTN 123 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + L +A + GV VN H A DA F + Sbjct: 124 KVFDT---LTFARETLPGLQSYALQNLATQFGVQAVNAHRAEDDARVCMEFFKI 174 >UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Burkholderia RepID=A9AEP6_BURM1 Length = 398 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + L+ VDLETTG E+G++ + + + Q P ++ G Sbjct: 35 EQPLVFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIP--PFIQQLTGIS 92 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + + L G F N +FD + + F+P Sbjct: 93 DAMVRDA----PSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP----- 143 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + GLDA+ R G+ RH A+ DA + L Sbjct: 144 ------DVLCTVRLSRALFPRESRHGLDALIARHGLVPAARHRALADADLLWQFWRHLHG 197 Query: 182 T 182 Sbjct: 198 I 198 >UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit family n=14 Tax=Actinomycetales RepID=D1BFZ9_SANKS Length = 616 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 56/181 (30%), Gaps = 13/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVDLETTG A E+G + V GE + V + G Sbjct: 61 TFVVVDLETTGGSSKDAGITEIGAVKVRGGEVI-GEFQSLVNPGHPVPAFIARLTGITTL 119 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + ++ RG N FD + + + + + Sbjct: 120 MVS----SAPSIELVLPSFLEFARGTVLVAHNAPFDISFLKAAARSMDLAWPG------- 168 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +++ D A + D L +A + H A+ DA AT L Sbjct: 169 -NQVLDTVPLARRVVTRDEAPNHKLGTLAALFRATITPDHRALSDARATVDVMHALFDRM 227 Query: 184 A 184 A Sbjct: 228 A 228 >UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae RepID=C1DWW1_SULAA Length = 205 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 16/180 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYER 63 ++VDLETTGL+ + +E+ L V+ G + H V+ P ++ G Sbjct: 11 FLIVDLETTGLNPVNSEIIEIAALRVEGGIVVD-KFHTLVKPSIGFIPTYITKLTGITNA 69 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + + + + N FD + + +T + Sbjct: 70 LV----VDKPTIEEVFPQFLKFSENSIIVAHNAQFDMSFLNS-------VSYQITGRSIQ 118 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + L K + L +A +P +H A+ DA T F + Sbjct: 119 NPVLCTQN---LAKRLFPDLPSKSLVNLAYHFNIPYNKKHRALEDALVTYELFKKIIDYL 175 >UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-positive type n=16 Tax=Bacteria RepID=C4Z5K4_EUBE2 Length = 1513 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 18/164 (10%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 +V DLETTG + +E+G + V GE + F + E + + Sbjct: 470 NDTYVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDRFSTFVNPEIPIPFRIET--LTHI 527 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + + E ++ G N FD++ + + + Sbjct: 528 NDQMVMNA----PKIEEILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTT--- 580 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS 164 + D A + + LD + + L V + + H Sbjct: 581 ------IIDTVLLA--QFLMPNLHNYKLDTLTKHLNVVLESHHR 616 >UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Proteobacteria RepID=DPO3E_SALTI Length = 243 Score = 160 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 18/183 (9%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D ETTG++ Y+ +E+G + V H+ ++ DP+A ++G Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVHGI 68 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L L + A E D++RG N +FD + + Sbjct: 69 ADEFL----LDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTF 124 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + A + + LDA+ R + R H A+ DA A + Sbjct: 125 CKV------TDSLALARKMFP-GKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLA 177 Query: 179 LRH 181 + Sbjct: 178 MTG 180 >UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A526_BIFAD Length = 256 Score = 160 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 16/187 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +DLETTG VE+G + V G + + + + +NG Sbjct: 82 MVDNYTSIDLETTGFSPSDDRIVEIGAIRVRNGRPVKRYSQL-INPQRPLPEEITRLNGL 140 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPA-FDSTIVARQRVTYSMPFSPLTV 119 + L + + ++ +T G N FD+ + M Sbjct: 141 TDADLRN----QPTVDQVLPDFIRFIGNDTLIGHNINEFDAAFLLANTTRLGMR------ 190 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + L + L + R G+ H A DA TA C++ + Sbjct: 191 -HIGNKTIDTLP---LDRALYPEEPKHRLVDIIRRFGIAQTESHRAADDALQTAQCYETM 246 Query: 180 RHTAAAH 186 + A+ Sbjct: 247 KAYMKAN 253 >UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XHM4_9FLAO Length = 221 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 13/178 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D ETTG + + +G L + + + + +A+ I+G Sbjct: 35 RFVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQEVFNEEAVAIHGILRE 94 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + ++E+ A +++ G + FD I+ P ++ Sbjct: 95 NRKYKKVSEE---EAVKAFLEFIGDAILVGHHVGFDIGIINYALKRLGAP-------KLK 144 Query: 124 HHRLADLAAYAAGKLNI---DPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + Y + DP ++ LD + E L + +RH A+GDA TA F Sbjct: 145 NKFTDTGVLYKRTVHLVNITDPNKVYTLDDLCEELNIAKTDRHKAMGDAYITALAFLK 202 >UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Roseobacter RepID=Q16CY8_ROSDO Length = 228 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 65/182 (35%), Gaps = 17/182 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTG D + VE+G + + + H + + +A +++G + Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPERSMPEEAFQVHGLGDDF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + A D++ N AFD + + ++P P W Sbjct: 64 LRDK----PKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELGWINLPKIP------WE 113 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 + L P LDA+ R G+ +R H A+ D+ A + L Sbjct: 114 QAIDTLDI----ARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELIGG 169 Query: 183 AA 184 Sbjct: 170 RQ 171 >UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alphaproteobacteria RepID=Q0C6A4_HYPNA Length = 232 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 17/192 (8%) Query: 1 MAKQL--IVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M +++ I D ETTGL+ + +E+G + + + A + I Sbjct: 1 MTERVREIAFDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINPGMAVSEATIRI 60 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 G + L + E ++ N +FD + + P Sbjct: 61 TGITDDHLRDKPPFEHP--DIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPE 118 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFC 175 R D A + P LDA+ +R + + +R H A+ D+ A Sbjct: 119 D-------RWVDTVQMARKR---YPGAPASLDALCKRFDISLESRTFHGALLDSQLLASV 168 Query: 176 FDMLRHTAAAHL 187 + L A Sbjct: 169 YLELLGGRARAF 180 >UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Deltaproteobacteria RepID=C7LWI5_DESBD Length = 244 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 6/184 (3%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQL-AAADPKAMEINGYYER 63 V+D E TGL V +G + V + + + + I+ Sbjct: 46 YTVLDTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRPSIPLPKTSTLIHRITPE 105 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVT-YSMPFSPLTVGRV 122 + + A E+ ++ +G G + D + + R + P + + + Sbjct: 106 AIAQA----PPLAEVLPELIEFCKGTLIVGHHVGLDMSFLNRACRKNHGQPLANPCLDTM 161 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + + + L +A +P H A+GDA TA+ F L Sbjct: 162 RMAMLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQTAYLFIYLAKK 221 Query: 183 AAAH 186 A + Sbjct: 222 IAGN 225 >UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodobacterales RepID=A8LQ52_DINSH Length = 485 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 65/187 (34%), Gaps = 19/187 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYY 61 + ++ D ETTGL + ++ V G+ + T+ P A I+G Sbjct: 290 KYVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGIT 349 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + G N FD R++ F Sbjct: 350 DAMVADA----PDFLTAGRAFHGFADGAVLIAHNAPFDMAFFYRKQAEIGARF------- 398 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDML 179 H L + A + TE LDA+AERL +P RH+A+GDA AT F L Sbjct: 399 -DHPVLDTVLLSA---VIYGQTEQHSLDALAERLNVTIPEEARHTALGDALATTEVFLKL 454 Query: 180 RHTAAAH 186 A Sbjct: 455 LPMLQAK 461 >UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria RepID=B0VKV7_ACIBS Length = 459 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 17/184 (9%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 + +++D ETTG + D +EVG + + + HI + +++++G Sbjct: 229 QGPRQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYIN-PEKPVGDSVQVHG 287 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + + + A + ++L+G N FD + + +P Sbjct: 288 ITDEFL----VDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSEV- 342 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + D A A K P + LDA+ R +P +R H A+ DA + + Sbjct: 343 -----CEVTDTLALAKNK---HPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYL 394 Query: 178 MLRH 181 + Sbjct: 395 AMTG 398 >UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales RepID=A1SLE5_NOCSJ Length = 601 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 56/184 (30%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTAL-PVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI-NGYY 61 VVDLETTG + E+G + V GE L T+ P + + G Sbjct: 29 TFCVVDLETTGGSAEGGAMITEIGAVKVRGGEVLG--EFQTLVNPRTEIPAFIAVLTGIS 86 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + A ++ G+ N FD + P+ V Sbjct: 87 NSMVADA----PPVEAALPAFLEFAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPGFEVV- 141 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D A A ++ D L ++A+ G H A+ DA AT L Sbjct: 142 -------DTARLARRVVSRDDAPNCKLSSLAKAFGSTTTPNHRALSDARATVDVLHGLME 194 Query: 182 TAAA 185 Sbjct: 195 RLGG 198 >UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flavobacteriales RepID=A4BWD8_9FLAO Length = 462 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 49/178 (27%), Gaps = 16/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG E+ L D + + V + G Sbjct: 3 YAVVDIETTGNGPKGQKITEISALIFDGKKIVD-EFTSLVNPEQNIPAFITSLTGITNAM 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + +V + F N FD I+ + + F Sbjct: 62 VRNA----PRFFEIAKKVAEITENTIFVAHNVNFDYNIIQAEFKSLGFDFKRKK------ 111 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L + I L + +P+ RH A GDA ATA L Sbjct: 112 -----LCTIRLTRKIIPGLPSYSLGNICTGENIPINGRHRAKGDAEATAELLRRLIER 164 >UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XIW2_9CAUL Length = 247 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 22/192 (11%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEI 57 MA++ IV+D ETTG D +EVG + + F + E+L AD A+ + Sbjct: 1 MARE-IVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPAD--AIRV 57 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 +G + + + A ++ D++ N FD + + P Sbjct: 58 HGITD----DKVKDAPKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPL--- 110 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFC 175 + R D A + P LDA+ +R + +V+R H A+ DA A Sbjct: 111 ----LHETRWIDTLQLAQKRF---PGMANSLDALCKRYKISLVDRTLHGALIDARLLAEV 163 Query: 176 FDMLRHTAAAHL 187 + L+ L Sbjct: 164 YLELKGGKERVL 175 >UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothiorhodospiraceae RepID=Q0A739_ALHEH Length = 729 Score = 159 bits (404), Expect = 4e-38, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 17/178 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 +V D ETTGL + V + + + G L + P ++ +G ++ Sbjct: 536 YVVFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNPGRTIPRSSILFHGIHD 595 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + ++ + N AFD + + + F Sbjct: 596 TTVADK----PRIETVLPRFHTFVGDSVLVAHNAAFDMKFIRLKERRCGVRF-------- 643 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L L D T L+A+A RLGV V +H+A GDA TA F L Sbjct: 644 DNPVLDTLL---LSVFLHDHTADHTLEAIAARLGVEVTAQHTAWGDALVTARVFACLL 698 >UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2 Length = 233 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 64/183 (34%), Gaps = 16/183 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M + + +D+ETTGL+ +EVG+ V+ G+ V + + E+ G Sbjct: 1 MINRYVALDIETTGLNPAVDRIIEVGMARVEDGQITQKYS-TLVYPGISVSERITELTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + + GE+ +++ G N FD + + + V + + Sbjct: 60 HNEELTGK----PRIEDIIGEITEFIGDWPVLGHNVIFDFSFLKKAAVNNGLTIND---- 111 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + E + L + + + H A DA + + + L Sbjct: 112 -------DGIDTLKLARRILPEVEHKSLSFLCQYFNIDPGRSHRAYDDAVSASLLYAKLE 164 Query: 181 HTA 183 Sbjct: 165 EIK 167 >UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolbachia RepID=B3CMS2_WOLPP Length = 234 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 17/185 (9%) Query: 6 IVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 IV+D ETTGLD +E+G + + H + + +I+G E Sbjct: 8 IVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKIHGISEEF 67 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + E D++ + N FD + + + G + Sbjct: 68 LEDK----PLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLN-------AGLISS 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLRHT 182 R+ D A K P L+A+ +R + + R H A+ DA A + L Sbjct: 117 DRVLDTLPLARKKFVGSPA---SLNALCKRFDISLEGRELHGALVDAQLLAKVYVELTGG 173 Query: 183 AAAHL 187 L Sbjct: 174 LQTFL 178 >UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0M5_PHYMT Length = 1449 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 20/183 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 ++ D ETTGL +E+ + + + + + P + + Sbjct: 408 TYVIFDFETTGLSKINDQIIEIAAIKIQNNQIID-EFQTLINPQQELTPFIENLTNISNQ 466 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTVG 120 L + A + + + N +FD + Q + + + Sbjct: 467 DLKN----QPLIATILPKFLKFCENSILIAHNISFDMGFLVNQTKKHLNLKLNLPFIDTL 522 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + L Y L ++A+ + N H A+ D T F L Sbjct: 523 NLARYCLDSNLRY------------FNLKSLAKYFKISFENHHRAMSDVLITKTIFQQLL 570 Query: 181 HTA 183 + Sbjct: 571 NYL 573 >UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacter sp. M18 RepID=C6MPJ2_9DELT Length = 835 Score = 159 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYY 61 + +V D ETTGL V + + + G+ T+ P ++ + Sbjct: 640 EYVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAESTAFHRIE 699 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + + + + N AFD + +P Sbjct: 700 DHMVADA----PSMNEVYPQFVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLP-------- 747 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + D + G TE LDA+A+R+G+ + RH+++GDA ATA F L Sbjct: 748 LVENPILDTLFLSVG--LHSGTEGHSLDAMAQRMGIAIEGRHTSLGDARATAQIFLGLLS 805 Query: 182 TAAAH 186 Sbjct: 806 LLPGR 810 >UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus RepID=A5LYL7_STRPN Length = 910 Score = 159 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 18/185 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEINGYYE 62 +V D+ETTGL ++V + G + F I +A E+ G + Sbjct: 424 TYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSA--FTTELTGITD 481 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + E Q++ + N FD + + +P ++ Sbjct: 482 DHVKNAK----PLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLP-------KI 530 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF-CFDMLRH 181 + L + + GL + +R GV + + H A DA AT F ++ Sbjct: 531 SQPVIDTLE---FARNLYPEYKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKE 587 Query: 182 TAAAH 186 A H Sbjct: 588 VAEKH 592 >UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neorickettsia RepID=C6V4W1_NEORI Length = 228 Score = 159 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 16/188 (8%) Query: 3 KQLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +++D ETTGLD + +E+G + + + HI + +A ++G Sbjct: 4 RRKVILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPEREISKEATRVHGIT 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + ++ + N +FD + + + Sbjct: 64 FEQLAD----SPKFIDIADDFLQFIGSSEIVAHNASFDIRFLNSELIRARQRRL------ 113 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + + D A A I P LDA+ R + + R H A+ DA A + L Sbjct: 114 IKLENVIDTLAMA---RKIFPGSPASLDALCRRFRISLEQREFHGALLDAQLLARVYIEL 170 Query: 180 RHTAAAHL 187 + + Sbjct: 171 SKGSQVSM 178 >UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class) RepID=A5UUI5_ROSS1 Length = 956 Score = 159 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 22/186 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEING 59 M + I +D+ETTGL+ +E+ + + E L T+ Q + P + + G Sbjct: 1 MNQIYIAIDVETTGLEAGVDEIIEIAAVKFNADEVL--ETFSTLVQPVHSLPLNSSRLTG 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + + A +L+ G N FD ++ Q + +P Sbjct: 59 ITADMLA----SAPRFAEVAPRFAAFLKNYPLVGHNVEFDLRMLRAQGMR--LPQPAFDT 112 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + L + T L A+A LG+ H A+ DA T F L Sbjct: 113 FEL-------------ATLLMPRTPAYRLSALAATLGIHHDEAHRALSDADVTRQIFLYL 159 Query: 180 RHTAAA 185 A Sbjct: 160 LRRIEA 165 >UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDG4_9ACTO Length = 550 Score = 159 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 60/187 (32%), Gaps = 19/187 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VVDLETTGL E+G + + G + V+ P + G Sbjct: 29 WVVVDLETTGLGAGAD-ITEIGAVRIRDGAVVD-EFSSLVKPSRPIPPFITSLTGITPAM 86 Query: 65 LYREALTEQQTAVAWGEVQDWLR-GN----TFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + A A +W G N +FD + R + P+ + Sbjct: 87 VADAA----PIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRV-- 140 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ D A A L L VA G V H A+GDA ATA Sbjct: 141 ------RIVDTLALARLALPRPLVRNHKLGTVASYFGTATVPEHRALGDARATAEILLGF 194 Query: 180 RHTAAAH 186 AA Sbjct: 195 IDLLAAA 201 >UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphingobacteriales RepID=C7PV18_CHIPD Length = 456 Score = 158 bits (401), Expect = 8e-38, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 52/177 (29%), Gaps = 16/177 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VD+ETTG E+ + + G ++ + + G + Sbjct: 2 YAIVDIETTGGHASANGITEIAIY-IYDGRNIVQQYETLINPGVPIPRYIQSLTGITDEM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + G++ L F N FD + + Sbjct: 61 VANA----PAFDEVAGDIFALLHDKIFVAHNVNFDYSFIQYHLAQAGYQLRTKK------ 110 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L G+ I L + + L + V RH A GDAAAT F +L Sbjct: 111 -----LCTVRLGRKIIPGLPSYSLGNLCKSLEISVTQRHRAAGDAAATVKLFGLLLQ 162 >UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI99_EUBR3 Length = 245 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 16/178 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K V+DLE TGL +E+G V GE + V + E+ G + Sbjct: 8 KNYTVIDLEMTGLSAKNDKIIEIGAARVRGGEIVD-TISTLVNPKQHIPQRVQELTGITD 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A A + +++ + G N FD + + + V + S Sbjct: 67 SDVENAA----DMDEAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVNHKRTLS------- 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + + + L+ + E GV N H A+ DA T F+ L Sbjct: 116 ----LNAYDTLKIARKCLPAEQSKKLEDLCEYFGVSRKNAHRALDDAIETKQIFEKLL 169 >UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Actinomycetales RepID=A0QF17_MYCA1 Length = 643 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 54/190 (28%), Gaps = 22/190 (11%) Query: 4 QLIVVDLETTGLDYDT------ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 +VVDLETTG + E+G + V G + V+ + P+ M + Sbjct: 39 TFVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDG-VVLGEFATLVDPQRSIPPQIMRL 97 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLR---GNTFAGSNPAFDSTIVARQRVTYSMPF 114 G + ++ G N FD + + + Sbjct: 98 TGITTAMVSDA----PAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAW 153 Query: 115 SPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 R+ A L+ + L ++A V H A+ DA AT Sbjct: 154 P--------RPRVLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARATVD 205 Query: 175 CFDMLRHTAA 184 L Sbjct: 206 VLHALIERVG 215 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 16/179 (8%) Query: 4 QLIVVDLETTGLD-YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVD+ETTG + ++ G + ++ + ++ + L + + + G Sbjct: 6 TYAVVDIETTGGNVASGDRMIQFGCVLLEGDQVVHRFA-TNINPLTSIPKQIEHLTGLSN 64 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + + + L G N FD T ++ + MP + Sbjct: 65 KTVAQA----PYFEDIAATIYNLLDGCIIIAHNIQFDYTFLSAELQRCGMP-------AL 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + ++ + L+ + + + N H A DAA TA F +L+ Sbjct: 114 QNKGIDTVE---LAQVLLPTESSYRLNDLVSKFNIEHTNPHQADSDAAVTAELFLVLKQ 169 >UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=Q65S83_MANSM Length = 260 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 71/183 (38%), Gaps = 19/183 (10%) Query: 6 IVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 I++D ETTG++ Y+ +E+G + + H+ ++ DP+A++++G Sbjct: 11 ILLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPDRLVDPEAIKVHGI 70 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + E D+++G N FD + + + + + Sbjct: 71 TDEMLEDK----PVFTEVAQEFIDFIKGAELLIHNAPFDVGFMDYEFRKHHIDVKTADIC 126 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 V + + P + LDA+ +RLG+ R H A+ DA + + Sbjct: 127 SV-------TDTLQLAR-QMYPGKRNSLDALCDRLGIDNTKRVLHGALLDAEILGDVYLV 178 Query: 179 LRH 181 + Sbjct: 179 MTG 181 >UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caulobacteraceae RepID=B4W5N5_9CAUL Length = 241 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 18/190 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA++ IV+D ETTG D +EVG + + H V P A+ ++G Sbjct: 1 MARE-IVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPERLIPPDAIRVHG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + ++ +++ N FD + + P + T Sbjct: 60 ITD----DKVKDAPKFHEIADDLIEFIGDAPMIAHNAGFDRNFIDFEYKLCGRPITGET- 114 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 R D A + P LDA+ +R V +V R H A+ DA A + Sbjct: 115 ------RWIDTLKLAQARF---PGMPNSLDALCKRFKVSLVERTLHGALIDARLLAEVYL 165 Query: 178 MLRHTAAAHL 187 LR L Sbjct: 166 ELRGGKERVL 175 >UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTI9_9FIRM Length = 828 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 66/182 (36%), Gaps = 17/182 (9%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++ VVDLETTG D +++G + ++ G+ L + + I G Sbjct: 7 RIAVVDLETTGSHLDQGDQIIQIGAVLIEDGQVLAQHS-MLLNPERNIPTHITAITGIQS 65 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + G + L+ F N FD T + + + F P Sbjct: 66 DQVQDA----PTFSQVAGLWYERLKDCFFVAHNLGFDLTFLQAKFAEQGLDFQP------ 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 L K+ + L +++ G+ + H A+GDA TA D+L H Sbjct: 116 -----PALDTVQLAKIFLPQAPGFNLQDLSQFFGLNFQDAHDALGDARMTAHLLDVLAHQ 170 Query: 183 AA 184 AA Sbjct: 171 AA 172 >UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=Q16B76_ROSDO Length = 465 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 64/186 (34%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAA-ADPKAMEINGYYE 62 +V D ETTGLD T V++G + V G+ + T+ P + ++ + Sbjct: 272 TFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPPGSTAVHQISD 331 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + VA + N FD + RQ F Sbjct: 332 AMVADA----PGFDVACRAFHQFAEHAVIVAHNAPFDMAFLRRQCRDQDYAF-------- 379 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDMLR 180 + L + A + + LDA+ +RL +P RH+ +GDA ATA L Sbjct: 380 DNPILDTVHLSA---VVFGGSAEHTLDALCDRLNVHIPDDVRHTGLGDALATAKALVALI 436 Query: 181 HTAAAH 186 A Sbjct: 437 PVLEAR 442 >UniRef50_B0UD78 DNA polymerase III, epsilon subunit n=5 Tax=Alphaproteobacteria RepID=B0UD78_METS4 Length = 238 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 65/189 (34%), Gaps = 14/189 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M ++ IV+D ETTG D T VE+G + + H + A+ ++G Sbjct: 1 MLRE-IVLDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQRPVSQGALAVHGL 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L + A D+ TF N AFD + + P Sbjct: 60 ADAFLADK----PPFAAILPAFLDFCGDATFVIHNAAFDVGFLNAEYARLGDAAPPA--- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + D A A K P LDA+ R G+ R H A+ DA A + Sbjct: 113 -IDLAGVVDTLALARRK---HPNAANNLDALCARYGIDNSRRTKHGALLDAQILAEVYIE 168 Query: 179 LRHTAAAHL 187 L L Sbjct: 169 LLGGKQTSL 177 >UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY86_DICNV Length = 233 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 21/193 (10%) Query: 1 MAKQLIVVDLETTGLD------YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA 54 M+ + ++ D ETTG++ + +E+G + + H + DP+A Sbjct: 1 MSFRSVIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPEQPVDPQA 60 Query: 55 MEINGYYERGLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMP 113 +++G + L + E + +L N AFD + R+ Sbjct: 61 FKVHGISDEFLADK----PFFKDVLPEFEAYLASADELVAHNIAFDRQFIDRELQLAGCD 116 Query: 114 FSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAA 171 + + D A K LDA+ +R GV R H A+ DA Sbjct: 117 YRLGDKFTL-----VDSLKIAREKFA---GARNNLDALCKRFGVDNTGRELHGALLDAQL 168 Query: 172 TAFCFDMLRHTAA 184 A + L + Sbjct: 169 LAEVYLKLTGGQS 181 >UniRef50_C0FUI4 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FUI4_9FIRM Length = 241 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 16/185 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +V+DLE TGL+ T +E G V + + K + + G Sbjct: 1 MLTDYVVIDLEMTGLNAKTDRILEAGAARVRGN-VVTATFSEIINPKRKLPEKVVSLTGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + T+ D++ + G N FD + + + V + F V Sbjct: 60 TNEMAAQGKETDAT----LAAFFDFIGEDILVGQNVIFDYSFLKQWAVNHKRTFERNAV- 114 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + + L ++ G+ V+ H A+ D T F+ ++ Sbjct: 115 ----------DTLKLARKFLPQEQKKDLASLCSYFGIERVHAHRALDDVMETQQIFEQMQ 164 Query: 181 HTAAA 185 A Sbjct: 165 KMYEA 169 >UniRef50_Q0EZC1 Probable DNA polymerase III (Epsilon chain) protein (Fragment) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZC1_9PROT Length = 300 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 20/190 (10%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHI---TVEQLAAADPKAMEING 59 +LI++D ETTGL + VE+G + V + L H+ + + + I+G Sbjct: 54 RLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPERNIPDEVVRIHG 113 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + E D++ G T N FD + + + P Sbjct: 114 IDN----AKVKDQPTFREIAQEFLDFIEGATLVIHNAPFDLGFIMNELRINNFP------ 163 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + H ++ D +A K P + LDA+ +R + +R H A+ D+ A + Sbjct: 164 -EIGHMQVIDTLVFAREK---HPHQRNNLDALCDRYNIERGHRELHGALLDSELLAEVYL 219 Query: 178 MLRHTAAAHL 187 + L Sbjct: 220 GMTGGRQFSL 229 >UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA Length = 929 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 17/187 (9%) Query: 1 MAKQ-LIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEIN 58 M K VVDLE TG D+D +++G V+ G+ + V ++ Sbjct: 1 MNKTKYAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVD-TFQSKVNPQRPIPAGITKLT 59 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + + EV L F N FD + ++ V P Sbjct: 60 GITDEQVQNA----PKFNDIVDEVYRKLVDTVFVAHNVEFDFPFLNQELVRSGYPELN-- 113 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + ++ T+ L + L + + HSA DA ATA Sbjct: 114 --------IPAVDTVSLSQIVFSFTKGYRLRDLTSYLKIEHDDPHSADSDAIATANLLIA 165 Query: 179 LRHTAAA 185 ++ Sbjct: 166 IKKNLQQ 172 >UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysipelotrichaceae RepID=C8NZK8_ERYRH Length = 1433 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 19/187 (10%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 + DLETTGL +E G + ++ G + I P E+ Sbjct: 381 QTGSYVSFDLETTGLSNYYDHIIEFGGVLIENGRVVKKMQTFIKA--PVPVRPFIQELTN 438 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L A E+ ++L + N FD + Sbjct: 439 ITDADLVNA----PSIEEAMDEILEFLGDHVLVAHNAQFDIDFIQETLRRIG-------K 487 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFD 177 + + + L + D L ++A + + H A DA + F Sbjct: 488 EPIQNAVIDTLD---LSRALFDNRRSYRLGSIARFMRIGYDEGVAHRADYDAEVLSLVFL 544 Query: 178 MLRHTAA 184 + Sbjct: 545 EMLRLEQ 551 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 14/177 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +DLETTGLD++ +EV L+ + GE + + P + G Sbjct: 7 FVALDLETTGLDFEKDEIIEVALVRFENGEPKENLDFLVKPSAVELRPFIETLTGIS--- 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A G++ ++ N FDS + + + + Sbjct: 64 -KADLESASDFATIAGQICSFVGDLPIVAHNAVFDSKFLKQTFTKVGISY--------DS 114 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 H D + ++ LD + + L + H A+ DA A F Sbjct: 115 HVFWD--SLTLSRIAFQDVPNHRLDTLVQELNIERSRAHRALPDADACGRLFVKALE 169 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 19/184 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + V+DLETTG ++VGL +D + V ++ G Sbjct: 2 KFAVLDLETTGHSVS-DDILQVGLAVLDDNLEIVETYSSFVRPTIEIPAFITQLTGIDAD 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ +L N FD+ + + Sbjct: 61 MVADA----PELDEVLMQLIPYLEDAVLVAHNVNFDAGFLNQALDRCGYH-------PFI 109 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF----DML 179 RL + ++ L AV E G+ H A DA ATA F L Sbjct: 110 GRRLDTIELL---RILYPSITTYQLGAVTELFGIAHDQHHRADSDAIATAELFAQSVQKL 166 Query: 180 RHTA 183 R Sbjct: 167 RQLP 170 >UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Neisseria RepID=Q9JYS6_NEIMB Length = 470 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 17/169 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLE+TG + EV L+ + G + + ++ + G + Sbjct: 29 PVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQ--FVAGLTGISDG 86 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A GE+ L+G N FD T + + + FS Sbjct: 87 MVADA----PVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSS------- 135 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAAT 172 L + + LD++ ERLG+ V +RH A+ D +A Sbjct: 136 ----PALCSVQLSRCLYPQFYKHSLDSIIERLGIVVEDRHRAMADVSAL 180 >UniRef50_A5IJS5 DNA polymerase III, epsilon subunit n=6 Tax=Thermotogaceae RepID=A5IJS5_THEP1 Length = 186 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 59/184 (32%), Gaps = 18/184 (9%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 VVD ETTG D VE+ + V G+ ++ P ++ ++G Sbjct: 8 FCVVDTETTGTDPFAGDRIVEIAAVPVFKGKIYRNKAFHSLVNPRIRIPALVQKVHGISN 67 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + +D+++G N FD T + + Sbjct: 68 MDIEEA----PDMDAVYNLFRDYVKGTVLVFHNANFDLTFLDMMAKETG-------NFPI 116 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + L + L + ERLG+ RH A+ DA TA F L Sbjct: 117 TNPYIDTLD-LSEEIFGRP----HSLKWLCERLGIKTTIRHRALPDALVTARVFVKLVEF 171 Query: 183 AAAH 186 + Sbjct: 172 LGEN 175 >UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphingobacterium spiritivorum RepID=C2FTR2_9SPHI Length = 469 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 16/178 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + +VD+ETTG + E+ + + G + + + G Sbjct: 11 RIYAIVDIETTGGYAANSGITEIAIY-LHDGHQVIDSYQTLINPHKEIPYHIQMLTGITP 69 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L ++ +L F N FD + + + Sbjct: 70 EMLTDA----PSFEDVAADIYSFLENKVFVAHNVNFDYSFIYAHLKACGYQWKS------ 119 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + L + +RL +P+ +RH A GDA AT F+ + Sbjct: 120 -----PKLCTVRLARNIFKGFSSYSLGNLCQRLDIPISDRHRAAGDAKATVILFERIL 172 >UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquificaceae RepID=DPO3E_AQUAE Length = 202 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 17/179 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYE 62 +V+DLE TG D + + +++ + V+ G T+ P+ ++ + G Sbjct: 18 TFVVIDLEATGFDVEKSEVIDLAAVRVEGGIIT--EKFSTLVYPGYFIPERIKKLTGITN 75 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 L + + E +++ N G D + + Y R Sbjct: 76 AML----VGQPTIEEVLPEFLEFVGDNIVVGHFVEQDIKFINKYTKQY----------RG 121 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 R L + + L +AE G H A+ DA TA F + Sbjct: 122 KKFRNPSLCTLKLARKVFPGLKKYSLKEIAENFGFETNGVHRALKDATLTAEIFIKILE 180 >UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anaplasmataceae RepID=Q2GJZ1_ANAPZ Length = 244 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 66/190 (34%), Gaps = 17/190 (8%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M + IV+D ETTGLD D +E+G + + V H ++ A ++G Sbjct: 1 MKVREIVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHG 60 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + A E+ D+L+ + N FD + + S + Sbjct: 61 ITRESLIGM----PKFAEVADELLDFLQDSALVIHNARFDMRFLEVEIERLSNKRAITNT 116 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + D A K P LDA+ +R + R H A+ DA A + Sbjct: 117 -------IVDTLEMARKKF---PGMPASLDALCKRFNISTQERKFHGALKDATLLARVYV 166 Query: 178 MLRHTAAAHL 187 L L Sbjct: 167 ELLEALQRRL 176 >UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=11 Tax=Bacilli RepID=DING_STAEQ Length = 902 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 15/175 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG D +++G+ V + + H + P + E Sbjct: 5 TFAVVDLETTGNQLDYDEIIQIGITFVRQNQVID-TYHSMIRTDLEIPPFIQALTSIEEE 63 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + ++ ++ F N +FD + + ++ F P V Sbjct: 64 ML----VQAPYFNEVADDIYQLIKDCVFVAHNISFDLNFIKKAFEKCNIQFKPKRV---- 115 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + K+ + L A+AE +P+ N H A DA TA Sbjct: 116 ------MDTLELFKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATTTAKLMIK 164 >UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=2 Tax=Thermus thermophilus RepID=Q5SK39_THET8 Length = 624 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 61/177 (34%), Gaps = 21/177 (11%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI-TVEQLAAADPKAMEINGYYER 63 DLETTGLD + V + ++V L V P A ++G Sbjct: 440 YTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNPGRPISPAATAVHGLTAE 499 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + +++ N AFD + + PL + Sbjct: 500 MLRDK----PPLEAVLPAFRAFVQDTVLVAHNGAFDLAFL----RRAGLDQPPLLDTLL- 550 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 +L + L+A+A R GVP RH+A+GDA TA F ++ Sbjct: 551 -----------LAQLLFPDLKDYRLEALAHRFGVPATGRHTALGDALMTAEVFVRMQ 596 >UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruegeria RepID=Q1GL30_SILST Length = 479 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 62/185 (33%), Gaps = 18/185 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPH-ITVEQLAAADPKAMEINGYYER 63 +V D ETTGL VE+ V G L V+ + +I+G + Sbjct: 273 FVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTKIHGVRDA 332 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + D+ + N FD ++ + + G W Sbjct: 333 DVAQ----SPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQ---------QEVQTGCSW 379 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS--AIGDAAATAFCFDMLRH 181 H + D +A L + LDA+ RL + + RH A GDA ATA L Sbjct: 380 DHPVVDTVLLSA--LVFGISADHSLDALCSRLSIEIPARHRHTAKGDARATAEALIRLLP 437 Query: 182 TAAAH 186 Sbjct: 438 LLQGK 442 >UniRef50_A4CKG8 DNA polymerase III, epsilon subunit n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKG8_9FLAO Length = 222 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 14/186 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V+D ETTG + +G L V G + D ++ I+G Sbjct: 33 DFVVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFVKQERFDRASVPIHGILRT 92 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 G A E+ D+ + G + +FD ++ + G + Sbjct: 93 GSSERV----TEREALAELLDFTGQSPVVGHHISFDQAMIQAACQRSGL-------GPLR 141 Query: 124 HHRLADLAAYAAGKLNIDPT---ELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + Y + + LD +A++ + +RH+A+GDA TA F + Sbjct: 142 NPLIDTGLLYGHTLIKSPLLIKKDHYTLDELADKFDISCKDRHTALGDAYITAIAFLNIL 201 Query: 181 HTAAAH 186 A Sbjct: 202 ELLRAK 207 >UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQP7_9ACTO Length = 286 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 18/173 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +VVD+ETTGL + VE+ L+ ++ G + V+ DP ++ Sbjct: 36 PFVVVDVETTGLSSTSDRIVEIALVRIEGGRVVD-EWATLVDPGRDPDP--TFVHHITAE 92 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L A GE+ L G N F+ +A++ + +P Sbjct: 93 MLSGA----PTFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGISTAP------- 141 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 L + + + L + G+ + + H+A+GD ATA Sbjct: 142 ---LPAVCTLRLARQVL-AAPNFQLVSCCTVYGIELHDAHTALGDTRATAQLL 190 >UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum RepID=DPO3E_TREPA Length = 215 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 15/181 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNV-DTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 D ETTGL + +E+G + G F I ++ A P +IN + Sbjct: 15 FTAFDTETTGLKAEEDRIIEIGAVTFDRKGIIARFSTLIFPDR--AIPPDVSKINHITDD 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + + +++G N FD + + L + Sbjct: 73 MLVNK----PRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAEL--------SLCKKQPL 120 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 H++ D A A L +A + G+ V H A DA F + Sbjct: 121 SHKVVDTYAMAQAVFPGLGRHQYRLQNLALQFGLTVHAAHRAEDDARVCMELFTTMIAHH 180 Query: 184 A 184 A Sbjct: 181 A 181 >UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ64_9FIRM Length = 1442 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 53/179 (29%), Gaps = 17/179 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTGL +E G + + G L ++ + + Sbjct: 392 TYVVFDLETTGLSAKYDYMIEFGAVKIKNGLRLDSKQLF-IKPPISIPAFIEKKTNISNE 450 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + E+ ++ N +FD + + S + Sbjct: 451 MVRNAK----SFSEVVDELLAYIGDAVLVAHNASFDFPFLNEELRRLSRK-------PLT 499 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDMLR 180 + + L + + L+ V+ + + H A DA A F+ L Sbjct: 500 NPVIDTLDM---ARAILSDRSRFALEYVSNHYKLNYSRSDAHRADYDANILADAFEHLL 555 >UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVH7_9AQUI Length = 215 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 74/188 (39%), Gaps = 22/188 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D ETTGLD A V +G L V + ++EI+G Sbjct: 39 TFVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFHRFVKPKELTRVSVEIHGITPH 98 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQ-RVTYSMP--FSPLTVG 120 L ++A + + + +++RG+ G N FD IV + +P L V Sbjct: 99 ELEKKAESHDR---VLEDFMEYVRGSVLVGFNVEFDRKIVEKYSLKVLGLPLLNYRLDVF 155 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-L 179 R+W R L +AE LG+PVV HSA+ DA TA F L Sbjct: 156 RLWKKR---------------GGREGSLKDIAEELGIPVVGAHSALDDAYITALVFLKLL 200 Query: 180 RHTAAAHL 187 + A+L Sbjct: 201 KRFRGANL 208 >UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FGI7_9BIFI Length = 186 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 16/184 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +VVDLETTG+ +E+G + V+ G ++ V + G Sbjct: 16 TDDYVVVDLETTGISPARDRIIEIGAVRVEHG-TVTAEYSKLVNPGRPVGGFITGLTGIS 74 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLR-GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + LR +T N FD + + T+G Sbjct: 75 DEMVGNAS----PIEAVLPDFLAHLRPSDTIVAHNANFDINFLYDNCMR--------TLG 122 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + + D + L + +R G+ H + DA T C++ ++ Sbjct: 123 KPFSYDFIDTLRLSRA--LFPQERQHRLVDLIQRFGIADEEEHRGLSDALQTVECYERMK 180 Query: 181 HTAA 184 A Sbjct: 181 PLLA 184 >UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchnera aphidicola RepID=DPO3E_BUCBP Length = 245 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 18/187 (9%) Query: 6 IVVDLETTGLDY-----DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 IV+D+ETTG++ +E+G + + H ++ D ++ +I+G Sbjct: 8 IVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIHGI 67 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L L + + + +++ + N FD + + + ++ Sbjct: 68 TDNFL----LDKPKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKIS-- 121 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + + D A P + LDA+ R + V +R HSA+ DA A + Sbjct: 122 --DYCNVVDTLPLARQLF---PGKKNSLDALCNRYKINVSHRDFHSALIDAKLLAKVYTF 176 Query: 179 LRHTAAA 185 + + Sbjct: 177 MTSFQQS 183 >UniRef50_C5B532 DNA polymerase III epsilon subunit n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B532_METEA Length = 248 Score = 155 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 16/186 (8%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +++++V D ETTG D +EVG + + G H V A I+G Sbjct: 4 SQRIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFRTGRHFHSYVNPERPVPADATAIHGI 63 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L A ++ +++ + N FD + S+P Sbjct: 64 TDEMLKDA----PVFAAVAADIVEFIADSPAIFHNAPFDLGFFDLEFGLLSLP------- 112 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDM 178 + R+ + + + GLDA+ R G+ R H A+ D+ A + Sbjct: 113 SLDRSRV--TDSLVHARKLLPAGAKAGLDALCNRYGIDRTRRTKHGALMDSELLADVWLA 170 Query: 179 LRHTAA 184 + T Sbjct: 171 MTGTGG 176 >UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6 Tax=Rhodobacteraceae RepID=DPO3E_RHOCA Length = 704 Score = 155 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 63/181 (34%), Gaps = 19/181 (10%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKA-MEINGYY 61 +V D ETTGL V++ + + G + T+ P A ++G Sbjct: 509 TFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGIT 568 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E + T A + G N FD + R+ + F Sbjct: 569 EAMVA----TAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIGKNF------- 617 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLG--VPVVNRHSAIGDAAATAFCFDML 179 + L + A + E LDA+ RLG +P RH+A+GD ATA F L Sbjct: 618 -DNPVLDTVLLSA---VVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRL 673 Query: 180 R 180 Sbjct: 674 L 674 >UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CLT9_9FLAO Length = 375 Score = 155 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 61/178 (34%), Gaps = 18/178 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 V+D+ETTG +D E+ + D E + F+ I E+ P ++ G Sbjct: 2 TYAVLDIETTGGKFDEEGITEIAIHRFDGHEVVDTFISLINPERPIQ--PYVQKLTGIDP 59 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + T + + + R + N FD I+ + F Sbjct: 60 KMVQ----TAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYNFERK----- 110 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + I E L + LG+PV NRH A GDA AT L Sbjct: 111 ------TLCTVDLSQRLIPDAESHSLGKLVRSLGIPVSNRHRANGDALATLKLLQHLL 162 >UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIX0_KOSOT Length = 185 Score = 155 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 17/187 (9%) Query: 1 MAKQLIVVDLETTGLDY-DTALPVEVGLLNVDTGES-LYFVPHITVEQLAAADPKAMEIN 58 M K +V+D ETTG +E+ + + G+ + H V I+ Sbjct: 1 MNKVYVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIRIPAYISGIH 60 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + +E + + +++L G + D Sbjct: 61 GLKNEDVT----SEPTISDVFPRFKEYLGNAIIVGHSIEVDMKFFDIACKEIG------- 109 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + L ++ L +A+RL + H A+ DA T F Sbjct: 110 TFPLSNQYIDTLKIAK----DLFKEGSYSLAELAKRLKIKDAPTHRALDDARVTGKVFLA 165 Query: 179 LRHTAAA 185 + Sbjct: 166 MVKKLGG 172 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 155 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 62/186 (33%), Gaps = 16/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M+ + +VVDLETTG ++ + ++ G+ + + + E+ G Sbjct: 1 MSNKYVVVDLETTGNSAKKGDKIIQFAAVVMEGGKIIDQYSSL-LNPGKEIPAFIEELTG 59 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + A +V + L F N FD + + + + P Sbjct: 60 LNDSMVSDA----PVFAEIAPKVMELLEDAYFVAHNVLFDLSFLQEELLDAGFP------ 109 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + + + + ++ L ++ + G+ H A DA ATA + Sbjct: 110 -GFYGPVIDTVE---LARTVLPCSDSYKLSDLSAKEGIMHDRPHQADSDAYATAKLLHIF 165 Query: 180 RHTAAA 185 Sbjct: 166 LERLEE 171 >UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chromobacterium group RepID=B9Z6P2_9NEIS Length = 476 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 56/182 (30%), Gaps = 25/182 (13%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +VDLETTG E+G+L +D + + Q P + G Sbjct: 4 EQPCAIVDLETTGGHITRDRITEIGILLIDGERIERYETLVNPGQPIP--PFIENMTGIS 61 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A + + L+G N FD + + F Sbjct: 62 DAMVAEA----PPFAALVETLLEKLQGRLLLAHNARFDYGFLKNEFKRAGHVFQSEV--- 114 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA--------ATA 173 L + LD++ R G+ + +RH A+ DA ATA Sbjct: 115 --------LCTVKLSRRLYPQHFKHSLDSLIARHGIVLADRHRAMADALAVYHFIEAATA 166 Query: 174 FC 175 Sbjct: 167 EL 168 >UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFY8_LIBAP Length = 245 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 21/181 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDT--GESLYFVPHITVEQLAAADPKAMEINGYYER 63 IV D+ETTGLD +E+G + + + F + P+A++++G + Sbjct: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPN-GRKNSPEALKLHGITDE 68 Query: 64 GLYREALTEQQTAVAWGEVQDWL--RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + + + E D+ + + N FD + + + Sbjct: 69 FLKDK----PSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRIN-------KDP 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDML 179 + R+ D + A K P+ L+++ +R G+ + +R H A+ D+ + + + Sbjct: 118 LDPSRIIDTLSIARRK---HPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKM 174 Query: 180 R 180 Sbjct: 175 M 175 >UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exonuclease n=2 Tax=Clostridium kluyveri RepID=A5F9M6_CLOK5 Length = 441 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 48/174 (27%), Gaps = 16/174 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VVDLETTGL+ +E+ + E + V P IN Sbjct: 131 FVVVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYT-TLVNPEVFIPPNITNINHIDNDM 189 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + +++ N FD L + + Sbjct: 190 V----KDCPEIKEVLPGFMNFIGQLPLVAHNAPFDIKF--------LNANLALLGLYLNN 237 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + L + E L + E L + V + H A+ D + Sbjct: 238 PIIDTLP---ISRKLFSEIENHKLGTIKEYLNIDVQDSHRALPDCYVCGQIYLE 288 >UniRef50_C0QPN1 DNA polymerase III subunit epsilon n=1 Tax=Persephonella marina EX-H1 RepID=C0QPN1_PERMH Length = 206 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYYE 62 DLETTGLD + + +G + + + + + + + I+ Sbjct: 34 TFCSFDLETTGLDVEKDEIISIGAVKIKEMKIDLSTSFYRIVKPERIPEKENILIHSIT- 92 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 E + + ++++G G +FD +++++ + Sbjct: 93 ---ASEMKKGEDIRDVLPKFLEYIKGTVLIGYFVSFDISMLSKY-------TQKFYGFPI 142 Query: 123 WHHRLADLAAYAAGKL----NIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + Y K+ + + + LD +AE L +PV RH+A+ D+ TA F Sbjct: 143 LNPYIDVSQLYIKKKVKSYTPYEKIKEKSLDQIAEELNIPVRKRHNALYDSITTALIFLS 202 Query: 179 LRHT 182 L Sbjct: 203 LMKR 206 >UniRef50_C8RRD8 Exonuclease n=2 Tax=Corynebacterium jeikeium RepID=C8RRD8_CORJE Length = 198 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 21/189 (11%) Query: 6 IVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERGL 65 IV+DLETTGL +E+ L++ GE + + + ++ G + L Sbjct: 13 IVIDLETTGLRPQEERIIEIAALHIRNGELQDKYT-TLLNPNLSVPQEITDLTGISDGLL 71 Query: 66 YREALTEQQTAVAWGEVQDWLRGNTF---------------AGSNPAFDSTIVARQRVTY 110 + + E+ ++LR T G N +FD + + + + Sbjct: 72 ADK----PTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRT 127 Query: 111 SMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAA 170 + S R + RL A + + + L VA L +P H A+ DA Sbjct: 128 QLKNS-ADANRPYTPRLVCTAEASRTLIPRESVGRYRLGNVASYLKIPHRPLHRAMSDAL 186 Query: 171 ATAFCFDML 179 AT L Sbjct: 187 ATYDVLRAL 195 >UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma mobile RepID=Q6KIN3_MYCMO Length = 1433 Score = 155 bits (393), Expect = 7e-37, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 17/177 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + +V DLETTGL +E G + G+ + + V+ K I G Sbjct: 397 NETYVVFDLETTGLSPIFDDIIEFGAQKILNGKVIDTLQFF-VKPNKEISEKITLITGIK 455 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + A ++ +++ +T N FD + + Y+ S L + Sbjct: 456 NQDVENAI----SEKEALKKILEFMGDHTVVAHNATFDMNFINEKIEKYNFQESNLQI-- 509 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCF 176 + K+ + L+ +A R G+ H A DA A + Sbjct: 510 --------IDTLVVSKIIEPEAKKFSLENLASRSGIIYNSTEAHRADYDADVLAKVW 558 >UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C737_9FIRM Length = 204 Score = 155 bits (393), Expect = 7e-37, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYY 61 + V+D+ETTGL+ D +EVG + V + + F ++ ++ P+ ++ G Sbjct: 22 EDYTVIDIETTGLNPDENEIIEVGAVKVRDRKIVDEFSSFVSPKKDI-ISPEIRKLTGID 80 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 E + Q +++ G G N FD + Y + Sbjct: 81 EAMIEGA----DQIEDVIPRFNEFIDGEILLGHNVNFDINFLYDNYERY-------SDFY 129 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + + + + E L+ V ++LG+ V +H A+ D CF+ R Sbjct: 130 LSNDYVD---LLKISRKLSPEFENHKLETVLKKLGIKVDQQHRAVSDCIDAHHCFEKYRE 186 Query: 182 TAAA 185 T A Sbjct: 187 TIIA 190 >UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flavobacteria RepID=A5FH18_FLAJ1 Length = 209 Score = 155 bits (392), Expect = 9e-37, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 18/191 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V+D ETTG DY+ + +G L + G D +I+G Sbjct: 24 RFVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLHQDHYDKSTAQIHGI--- 80 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + A + D+L + + FD T++ + +P ++ Sbjct: 81 -LKDLLVKRPTELEALQQFLDFLGDSIIIAHHTVFDVTMINKALERNGLP-------QLT 132 Query: 124 HHRLADLAAYAAGKL---NIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD--- 177 + L Y + + + LD +A++ + +RH+A+GDA TA F Sbjct: 133 NKTLDTAYLYKKTLIQSHLFERKDHYTLDDLADKFDISKKDRHTALGDAYITAIAFLKIV 192 Query: 178 -MLRHTAAAHL 187 LR A L Sbjct: 193 KKLREKKAVSL 203 >UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSB2_CHLT3 Length = 578 Score = 155 bits (392), Expect = 9e-37, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 17/178 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 VVDLETTG +E+ + G+ + + EQ + + G Sbjct: 23 TFAVVDLETTGGLKPENRIIEICAIKCRNGQEVGMLESLVNPEQQISY--FISQYTGITN 80 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +V ++ + F N FD + + ++ Sbjct: 81 SMVDNA----PVIQSLLTKVSEFFQETIFVAHNVPFDMGFINMELERNGY-------AKL 129 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + L + + + + + L +A+ G+ V NRH A GD AT L Sbjct: 130 TNRWLCT---FRLARRLLPTQQKKNLGDLAKYFGIIVENRHRARGDCEATIKLLAELI 184 >UniRef50_C6CYA2 DNA polymerase III, epsilon subunit n=2 Tax=Bacillales RepID=C6CYA2_PAESJ Length = 244 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 17/187 (9%) Query: 4 QLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADP-KAMEINGYY 61 ++V DLETTG + + G +++ E ++ P + +E+ G Sbjct: 59 DIVVFDLETTGFYPSNGDEIISFGAVHMKGLELDESRQFYSLVNPKRRIPRQIIELTGIT 118 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + +++ D + + Sbjct: 119 NEMVQDA----PDLMQVLHDFMEFIGRRLLIAHAAGHDKQFLNAALWR-------TSKVS 167 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM-LR 180 + H L + K LD + E G+P+ RH A+ D+ TA + L Sbjct: 168 LNHRVLDTML---VAKWLEPKRASYALDDLLEDCGIPITERHHALQDSLMTAKLWQQFLV 224 Query: 181 HTAAAHL 187 ++ Sbjct: 225 RILDRNI 231 >UniRef50_B3R0A4 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0A4_PHYMT Length = 1522 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 14/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +V D+ETTG +E+ + + + V + Sbjct: 415 EYVVFDIETTGFSKVRDKIIEISGFKIKNNIVID-QFYSLVNPEIDLPENIYLLTKIKNE 473 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + +++ N +FD + + + ++ F L Sbjct: 474 TLKNA----PKILQVLPDFLKFIKNTCLVAHNASFDVSFIFEKSKQLNISFPLLP----- 524 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + D A + + + L +A + V + H A DA AT F + + Sbjct: 525 ---VIDTLALSQYYFSSF-MKFFSLKRLAAKFKVKLEEHHRAKDDAKATTEIFMKILNLL 580 Query: 184 A 184 Sbjct: 581 E 581 >UniRef50_A9F4T5 DNA polymerase III, epsilon subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F4T5_SORC5 Length = 258 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 7/181 (3%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 + + VD+ETTG D +E+G++ +GE L + + ++ I+G + Sbjct: 43 QPIAFVDVETTGRDPAGDRIIELGIVIGRSGEILTRY-NWLIHPGRPIPAESTAIHGIKD 101 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A E+ +G A N FD + + + M Sbjct: 102 ----ADVEGKPSFAEVAEEILGCFKGAIPAAYNATFDRSFLLAELERVGMRPREP--PPA 155 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + + + E L +A RLG+ + H A DA A L Sbjct: 156 MRREVDWVDPLTFARELYKNEESRALGDMAARLGISLEKAHRATDDAEAALQVLYALAKD 215 Query: 183 A 183 Sbjct: 216 P 216 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 16/185 (8%) Query: 2 AKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 A VVDLETTG + + +++G + V GE + + +++ G Sbjct: 16 APIYSVVDLETTGTNVNHGDRIIQIGCVLVQDGEIIN-HFETKINPREKIPRSIVQLTGI 74 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++ + + G + L TF N FD + + P Sbjct: 75 EDKDVRKA----PLFEDIAGTIYSLLAETTFVAHNVNFDFPFLNAELERAGYPSLS---- 126 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + + ++ + + L + L + + HSA+ DA ATA + L Sbjct: 127 ------IPAIDTVTLSQILLPTAKSFRLRDLTSSLHIEHDHPHSAVSDAEATADLLNDLL 180 Query: 181 HTAAA 185 Sbjct: 181 KRVQE 185 >UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bacteroidetes RepID=A6EU25_9BACT Length = 472 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 17/185 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ V+D+ETTG E+ ++ V+ E + V + + G Sbjct: 5 TEKFTVIDVETTGG-VGQGRMTEICIITVENMEIVD-VWSSLINPEIYIPQHITALTGIT 62 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 ++ + + +++ R F N FD + ++ FS Sbjct: 63 DQMVTDA----PRFCDVAAIIEEKTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKK--- 115 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + I L + +G+ +++ H A D AT F L Sbjct: 116 --------LCTVRLSRKLIPGLPSYSLSKLCRSIGISLLDAHRAEADTRATTTLFLQLLE 167 Query: 182 TAAAH 186 + Sbjct: 168 KDSVA 172 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 18/177 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 +V DLETTG+ +E+ L V E + F + + A A ++NG + Sbjct: 58 YVVFDLETTGISAVKDDIIEISALKVKNHEQVETFSRLVNPRRPIPA--GATKVNGITDE 115 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP-AFDSTIVARQRVTYSMPFSPLTVGRV 122 + +E E D++ G G N +FD + R + V Sbjct: 116 MVQ----SEPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAA-------DEVCRKAV 164 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + L + + L +A+ + H A D C++ + Sbjct: 165 LNDFIDTLFM---ARALLPGLSRHRLTDLADYFKISSEGAHRAFNDCVMNQICYEHM 218 >UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flexibacteraceae RepID=D2QE10_9SPHI Length = 180 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +VD+ETTG E+ + G+ + H + P + G + Sbjct: 2 YCIVDVETTGGVKGPTRLTEIAIFR-HDGQQVVDSFHSLLNPGCPIPPFIRHLTGISDEM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + A +V + + F N FD + + ++ F Sbjct: 61 VQDA----PTFADVANDVLNITQDAIFVAHNVGFDFSFIQKELNWLGHDFLRR------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + + L + L +P+ RH A GDAAAT F+ML A Sbjct: 110 ----TLCTVRTSRKLLPGYPSYSLGKLCRSLEIPLNGRHRAQGDAAATVLLFEMLLKNDA 165 Query: 185 AHL 187 L Sbjct: 166 QGL 168 >UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propionibacterium acnes RepID=D1YAF0_PROAC Length = 633 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 16/182 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI-NGYYE 62 VVDLETTG + + E+G + V G T+ + P ++++ G + Sbjct: 67 TFCVVDLETTGTS-EGSQITEIGAVKVCGGRVEG--EFQTLVCPTGSIPASVQVLTGITD 123 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + ++ R N FD + R + P+ Sbjct: 124 VMV----RSAPSLNAVLPSWSEFSRSTALVAHNARFDIGFLQRAYAQHDYPW-------- 171 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 + D A A L L ++ H A+ DA AT L Sbjct: 172 DDPAVVDTLALARSVLARGEVRNYKLSTLSRLFHTTTTPSHRALADARATVDVLHGLIDR 231 Query: 183 AA 184 Sbjct: 232 VG 233 >UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W351_9ACTO Length = 547 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 50/188 (26%), Gaps = 17/188 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 +VVDLETTG + E+G + V G+ V A + + G Sbjct: 27 QETTFVVVDLETTGAGPGSHTITEIGAVRVRGGQVED-ELSTLVNPGRAIPAQITVLTGI 85 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLR----GNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 + A W R N FD + + + Sbjct: 86 TNAMVAGA----PPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHE 141 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF 176 R+ D A A L +A +G P H A+ DA AT Sbjct: 142 --------PRVLDTLALARRAWTRSEVPNHRLATLASFVGSPTRPTHRALDDARATVDVL 193 Query: 177 DMLRHTAA 184 Sbjct: 194 HAALEVLG 201 >UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lovleyi SZ RepID=B3E5V5_GEOLS Length = 168 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 20/182 (10%) Query: 4 QLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 ++IVVD ETTGL +E+G + V+ G+ + A ++G E Sbjct: 3 RVIVVDTETTGLSVRNQGRVIEIGAVAVENGQI-TAELATLINSGTPISYGAYRVHGISE 61 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L W ++ + N AFD + + M + Sbjct: 62 QMLAG----RPTPQEVWPWFLEFAGNSPLVAHNAAFDRAFINHELHLLGMSLAN-----P 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERL--GVPVV-NRHSAIGDAAATAFCFDML 179 WH + + L+ V + L +P RH A+ DA A + L Sbjct: 113 WH------CTVRLSRRKLPRLMNHKLETVYKHLFGELPEEVQRHRALDDARMAARVWVEL 166 Query: 180 RH 181 Sbjct: 167 LK 168 >UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacillus RepID=Q81AF9_BACCR Length = 315 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 18/176 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 +V+D ETTG + ++V + E + FV ++ E+ + + G Sbjct: 9 DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIP--DRITSLTGITN 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + +L N N +FD + +P Sbjct: 67 YRVSDA----PTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEP------- 115 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 +++ D A K + L+ + LG+ + H+A D A + Sbjct: 116 -KNKVIDTVFLA--KKYMKHATNHKLETLKRMLGIRLS-SHNAFDDCITCAAVYQK 167 >UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR66_CLOPH Length = 235 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 57/177 (32%), Gaps = 16/177 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 + +D+E+TGL + +E+ + G+ + + + E+ G E Sbjct: 3 FLAIDIESTGLSPEKDRIIEIAAIRYIDGKPKERFEKL-INPGCPLPERITELTGITEDM 61 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E + + G N + D + + + + + ++ Sbjct: 62 LAGAM----TEREVIKEFLTFAGEDVLLGHNVSVDFSFIKTAADRLKIGYERQGIDTLY- 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + E + L+++ E G+ H A+ DA A A + L Sbjct: 117 ----------LSRTLKSDLEKKNLESMCEHYGIIRECSHRALEDAIAAATLYQKLYE 163 >UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26FQ2_9BACT Length = 466 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 16/176 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTG E+ ++ + L + ++ + G Sbjct: 8 YCVVDIETTGNRMTGNRMTEICIVRMRGDTILDKYSSL-IDPEVLIPDYITTLTGIDNAM 66 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A E+ ++ + F N FD ++ + F Sbjct: 67 VA----SAPVFADVAEEILNFTKDYIFVAHNVNFDYNVLRNEFKRLHHDFKRKK------ 116 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + I L + + +G+P++NRH A GD AT F L Sbjct: 117 -----LCTVRLSRELIPGMRSYSLGKLCDDIGIPLINRHRAEGDTDATVILFQKLI 167 >UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RD59_9FIRM Length = 1447 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 18/179 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 V DLETTGL +E G V + + ++ +E+ G E Sbjct: 398 TYCVFDLETTGLSSRFDHIIEFGGQIVKDRTCIKSLQLF-IKPPVPIPAHIVELTGISEE 456 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A ++ D++ + N FD + + V + Sbjct: 457 HVRNAK----SFAECADQILDFIGDSILVAHNADFDYNFLNSELVRIGRK-------PLD 505 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDMLR 180 + + L ++ + L +A G+ H A DA A + + Sbjct: 506 NPVIDTLDL----ARSMQDRKGYRLGQIARSYGIRYDEDVAHRADYDAEVLANTYMNML 560 >UniRef50_Q8D3D2 DnaQ protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3D2_WIGBR Length = 246 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 76/187 (40%), Gaps = 18/187 (9%) Query: 2 AKQLIVVDLETTGLD-----YDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME 56 ++ IV+D ETTG++ Y +E+G + + H ++ + +A + Sbjct: 5 TERQIVLDTETTGMNKNGPHYYGHRIIEIGAIEMINRRLTGRCFHTYLKPDRLVEIEAFK 64 Query: 57 INGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSP 116 I+G + L+ + + ++++G+ N FD + + + + Sbjct: 65 IHGISDEFLF----FQPTFEEIMEKFINFIKGSELIIHNSVFDIGFINNEIQLCNKNLNN 120 Query: 117 LTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAF 174 + ++ + D A NI P + LDA+++R G+ R H A+ DA + Sbjct: 121 IN----YYCSVIDTLKLA---RNIFPGKRNNLDALSDRYGIDTTKRILHGALLDAEILSN 173 Query: 175 CFDMLRH 181 + ++ Sbjct: 174 VYLLMTG 180 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 16/182 (8%) Query: 5 LIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVD+ETTG D +++G + V + + V L + G + Sbjct: 7 YAVVDIETTGTSVTDGDRIIQIGCVFVQHNQVIN-HFETDVNPLKEIPAAISRLTGITNK 65 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + G + L F N FD + + P P Sbjct: 66 RVRHA----PLFDDVAGTLYSLLTNTVFVAHNVNFDLPFINAELERVGYPALP------- 114 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 +A + + ++ + L ++ + N HSA DA+ATA F L Sbjct: 115 ---IAAVDTVSLSQILLPTATSFRLRDLSRLFNIEHDNPHSADSDASATAELFIFLFRRL 171 Query: 184 AA 185 A Sbjct: 172 RA 173 >UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4 Length = 922 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 20/190 (10%) Query: 3 KQLIVVDLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ ++VD+ETTG+ + +++ + ++ + + + V + P + Sbjct: 2 ERFVIVDVETTGVSFIKGDRIIQIAFVVIEGKKIIDR-FNSYVNPMRDIPPFIRSLTNIN 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + E + + L G F N FD + + + Sbjct: 61 D----NEVKDAPTFDLVAPRLLQALDGAFFVAHNVDFDLSFINEELHALGY-------TG 109 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD---- 177 + + + K+ + L ++E L + H A DA ATA F Sbjct: 110 LSGPVIDTVE---LSKIAYPTADGFRLSQLSESLHMNHDQPHRADSDAEATALIFLEIMD 166 Query: 178 MLRHTAAAHL 187 L H L Sbjct: 167 KLYHLPKQTL 176 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 18/176 (10%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEIN 58 M K+ +VVDLETTG +E+G+ ++ G+ + ++ P ++ Sbjct: 1 MEKKFVVVDLETTGHSIKSGDEMIEIGVAVIEDGQITERLSAFVRPQKPIP--PFISQLT 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G + + + + A V L G F N FD T + Sbjct: 59 GITDEDVAQA----ESFATIAPRVLQLLDGGVFVAHNVQFDLTFLNEALEEEGYLPYTGP 114 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 V + ++ + E L + E L + H A DA ATA Sbjct: 115 V----------IDTVELARILLPTAESHSLSHLTEALQLTHHEAHRAGSDAEATAE 160 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 62/180 (34%), Gaps = 15/180 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I+VDLETTGLD + A +E+G L V GE + H V + + G + Sbjct: 2 EWIIVDLETTGLDPERAEILEIGALRVRGGEIVD-TFHTLVRPERPIPDEITRLTGLSDA 60 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A + AG + F+ + + + Y +P P Sbjct: 61 DVAGA----PSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQPGD----- 111 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 L + ++ L+ +A RL + H A+ DA L A Sbjct: 112 -----GLCTLSLARILAPRLMSHRLEYLARRLRLRAEVSHRALADARTAHQLLMRLEEKA 166 >UniRef50_A4SZE6 DNA polymerase III, epsilon subunit n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SZE6_POLSQ Length = 466 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 54/175 (30%), Gaps = 17/175 (9%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 L VD+ETTG +D E+G+ + + I + + + G Sbjct: 9 PDLAFVDIETTGSHFDRDRITEIGIKTLANDGIQVWERLINPQTFIPQN--IQRLTGISP 66 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + + E++ L G F N FD + + F P Sbjct: 67 QMVEG----QPSFDQVAKELKQELEGKIFVAHNARFDYGFIKASFKRVGIDFKPKV---- 118 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 L +L LD + G+ V RH A+GDA + Sbjct: 119 -------LCTVKLSRLLFPEQPRHNLDTIINAHGLQVSARHRALGDADLLLQFWR 166 >UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A497_GEMAT Length = 214 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 61/184 (33%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 VVD+ETTG E+ ++ V G+ + V P + Sbjct: 5 PFAVVDVETTGTRAAGGDRITEIAIVQVQGGQVGEVYSQL-VNPERPIPPYITSLTHIT- 62 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + V D LRG+ F N FD V+ + + + Sbjct: 63 ---WDMVRDQPTFREITSNVLDRLRGSIFVAHNAPFDWRFVSEEVRR-------GSGQEL 112 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 RL + + + LD V G+ + RH A GDA ATA + + Sbjct: 113 SGPRLCTV---RFARAALPQLSRRSLDHVTRYFGIEIAARHRAAGDALATAHALCRMLNI 169 Query: 183 AAAH 186 A+ H Sbjct: 170 ASEH 173 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 18/180 (10%) Query: 4 QLIVVDLETTGLDYDTA-LPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYY 61 VVD+ETTG D ++ V G+ + +++ P+ +++ G Sbjct: 6 TYAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIV--ETYVSDINPQREVPERIIQLTGIT 63 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 L + ++ L G F N FD + + P + Sbjct: 64 PERLKKA----PTFDQVSSKLYKLLSGTVFVAHNVNFDFPFLNGEFQRVGYPELDIEA-- 117 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + ++ + L ++ + + H+A DA ATA +L Sbjct: 118 --------IDTVTLSQILLPTLSSYRLQDLSTYFNIIHNHPHTADSDALATAKLLLILLR 169 >UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2X3_9BACT Length = 185 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 18/178 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + D+ETTG+ VE+ + VD SL + V +A+ ++ + Sbjct: 8 PFTIFDVETTGMSPVRDRIVELAAVRVDRDGSLSRFQSL-VNPGVRIPAQAVAVHHITDD 66 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A + ++ +T N FD + +P +W Sbjct: 67 MVAGA----PSFARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLP--------LW 114 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVV---NRHSAIGDAAATAFCFDM 178 + L + K L ++ + N H A D T ++ Sbjct: 115 KGK--TLDSLRLLKTTFPNLPSYNLQSLRAYFQLETEKGMNAHRAGADVEWTRQVLEI 170 >UniRef50_A3V111 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V111_9RHOB Length = 469 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 66/186 (35%), Gaps = 18/186 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 +V D ETTG + V++G L V G+ + A P + ++ + Sbjct: 275 TYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLVNPGRAIPASSTAVHRITD 334 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + A + + R N FD + R M F Sbjct: 335 AMVKDA----PDMVHAGRKFHSFARDAVLVAHNAPFDLSFFHRYAPKIGMKF-------- 382 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPV--VNRHSAIGDAAATAFCFDMLR 180 H L + A + TE LD +A+RLG+ + +RH+AIGDA AT F + Sbjct: 383 DHPVLDTVLLSA---VLFGITEGHTLDELAKRLGIELLDKHRHTAIGDAIATRDIFLRMI 439 Query: 181 HTAAAH 186 A Sbjct: 440 PMLEAR 445 >UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycoplasma RepID=B3PN84_MYCA5 Length = 1438 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 17/181 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ +V DLETTGL +E G ++ G ++ P EI Sbjct: 402 SQTYVVFDLETTGLSPRFNEIIEFGASIIENGIIKESHQFF-IKPTKPIPPSITEITKIT 460 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + ++ D L+ N FD + + Y Sbjct: 461 DNTVANGY----SQEEGVRKIYDILKNRICVAHNAKFDINVCKENFLKYG---------- 506 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGV--PVVNRHSAIGDAAATAFCFDML 179 + + ++ + + A + ID + L+ VA++ V H A DA A + ++ Sbjct: 507 LDNSKIIGIDSLAIARFLIDEAKSYRLEIVAKKFNVYYARNEAHRADYDANVLANVWILM 566 Query: 180 R 180 Sbjct: 567 I 567 >UniRef50_A1KUV1 DNA polymerase III, epsilon chain n=18 Tax=Neisseria RepID=A1KUV1_NEIMF Length = 253 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 62/185 (33%), Gaps = 13/185 (7%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 M ++ I++D ETTGL D VE L + + H+ V +A ++G Sbjct: 10 MIQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHG 69 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L E A ++ D+LRG N FD + + +P Sbjct: 70 LTIEVL--EGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLP-----T 122 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFD 177 + D A A P + LDA+ R V R H A+ D + Sbjct: 123 VEELGCTVTDTLAMAREMF---PGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYL 179 Query: 178 MLRHT 182 + Sbjct: 180 AMTRR 184 >UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X67_LACSS Length = 944 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 57/188 (30%), Gaps = 18/188 (9%) Query: 1 MAKQ--LIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI 57 M ++ VVDLETTG + ++ G V G+ + + V L K + Sbjct: 1 MNRETIYAVVDLETTGTNIKDGDRIIQFGCALVQNGKIIQTISQ-DVNPLRDVPTKIQHL 59 Query: 58 NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL 117 L + + L G F N FD + + + Sbjct: 60 THITADQLELA----PIFEDLAPTLVEILSGTVFVAHNINFDLPFLNGELTRVGLQPLD- 114 Query: 118 TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 LA + ++ + L + + L + N H A DA TA F Sbjct: 115 ---------LAGIDTVELAQIILPEAPSYRLQDLTQLLEIEHDNPHQADSDALVTAKLFL 165 Query: 178 MLRHTAAA 185 L A Sbjct: 166 KLSARLQA 173 >UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=A0K225_ARTS2 Length = 406 Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 15/186 (8%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M VVD+ETTGL E+ +++VD ++ V P+ I+G Sbjct: 1 MNAGFAVVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETLVNPQRDLGPQ--HIHGI 58 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + L +V + L G N FD V+ + + Sbjct: 59 R----AADILHAPVFGDIAHDVMELLAGRVLVAHNVHFDYRFVSHELGRAGLELPF---- 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 L + + L + G+ + N HSA DA A A Sbjct: 111 ----EVHDCLCTMKLARRYLPGAGR-SLKDCCDSFGLNLANAHSAGDDAEAAAHVLSNYL 165 Query: 181 HTAAAH 186 + + Sbjct: 166 RMDSGN 171 >UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bacteria RepID=A1BGS1_CHLPD Length = 219 Score = 152 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 18/182 (9%) Query: 1 MAKQLIVVDLETTGLDYD-TALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEING 59 MA ++V+D ETTGL +E+G + V+ GE + + G Sbjct: 5 MADSVVVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLM-NPGFRISRFIESYTG 63 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L + E +++ G+ N +FD + + + Sbjct: 64 ITNEMLSG----QPCCEEVMTEFSEFIAGHNIVAHNASFDRRFLDFELKRAKRVYEGACC 119 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR-HSAIGDAAATAFCFDM 178 + + + L + G+P + H A+ DA TA + Sbjct: 120 -----------CSLLVSRRIYQDSPNHKLQTLVSHAGIPEIGSFHRALADAEMTAHLWMS 168 Query: 179 LR 180 + Sbjct: 169 MI 170 >UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M5F0_CAPGI Length = 453 Score = 152 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 58/183 (31%), Gaps = 16/183 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG E+ + D + + + D + + G + Sbjct: 2 YAIIDIETTGGKMGEEAITEIAIYRFDGQKVTDRFISL-INPEKKIDDFVVRLTGISNKT 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + + + + N +FD +++ + + Sbjct: 61 VRQA----PKFYEVAKRIVEITEDCILVAHNASFDYRVLSLEFRRLGFDYQRS------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L + + L + LG+P++NRH A GDA AT F +L Sbjct: 110 ----TLCTVEMSQRLLPDEPSYSLGKLTRSLGIPLLNRHRANGDAMATVHLFKLLLDRDT 165 Query: 185 AHL 187 + Sbjct: 166 QKI 168 >UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-related DNA helicase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHT3_ANOFW Length = 880 Score = 152 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 18/176 (10%) Query: 1 MAKQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESL-YFVPHITVEQLAAADPKAMEIN 58 M + +VVD+ETTG +++G + ++ + F + E+ ++ Sbjct: 1 MNDRFVVVDIETTGNAPKKEDRIIQIGFVVIEGDKVKKRFSTFVQPERDIPL--FIQQLT 58 Query: 59 GYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 G ++ + + G F N FD + + + + Sbjct: 59 GIDHAMVHDA----PPFQHIAAMLVEQWEGAYFVAHNVQFDWAFLQEEFIRSGIQPPTCR 114 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + L + + L+ +AE L H A DA ATA Sbjct: 115 L----------LDTVELARFLMPTQSSYKLNHLAEALSFAHDRPHQADYDAEATAQ 160 >UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA Length = 307 Score = 152 bits (386), Expect = 5e-36, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 21/188 (11%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + V+D ETTGL +E+G+L V E + + ++ D + G Sbjct: 18 LIDDYCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDRYDQL-IKPSIEVDGFITALTGI 76 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 L + +V ++ + G N +FD + Sbjct: 77 TNDMLEDM----PSISSVKNDVLSFISEDIILGHNTSFDMRFLNEGFK-----------E 121 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 ++ + + + + L + + LG+ N H A+ D AT +D ++ Sbjct: 122 QLSNQYMDT---MQFARKLYPELKHHRLSDLTDYLGL-HNNEHRALADCIATKELYDAVK 177 Query: 181 -HTAAAHL 187 +L Sbjct: 178 SRMVEKNL 185 >UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TRJ1_9FLAO Length = 229 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 14/184 (7%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 + +V D ETTGLDY + +G + V + + + +P + +I+G Sbjct: 42 QNTRFVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQDFYNPDSAQIHGI 101 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 ++G Y + A + D++ + G + FD +V + + G Sbjct: 102 LKQGNYLKV----NEKEAIAQCLDFIGTDILVGHHVGFDVAVVNQSLKRAGL-------G 150 Query: 121 RVWHHRLADLAAYAAGKLNIDP---TELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFD 177 R+ + +L Y ++ + LD +AE L +P+ +RH+A GD+ TA F Sbjct: 151 RLKNRQLDTEILYKRLVHPVNRPLQDKRYTLDELAEALKIPLHDRHTAAGDSLITALAFI 210 Query: 178 MLRH 181 + H Sbjct: 211 KIVH 214 >UniRef50_Q9ZX22 Gp57 n=2 Tax=unclassified Siphoviridae RepID=Q9ZX22_BPMT4 Length = 177 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 101/187 (54%), Positives = 125/187 (66%), Gaps = 10/187 (5%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M +QL+VVD ETTGL D A +EV +N+DTG L+FVP +T EQLA A P AM++N Y Sbjct: 1 MTRQLVVVDCETTGLH-DGAAILEVAAVNIDTGAELHFVPFVTREQLAQAQPMAMQMNRY 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 YERG+++ L+ T A+ ++ + L GNTF GSNPAFDS ++A Sbjct: 60 YERGIWQRRLSPDSTDAAYWKLANMLAGNTFGGSNPAFDSRLLAAAM---------PDGA 110 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 WHHRLADLAA+ AGKLN+DP EL GLDAV ERLGV V +RHSA+ DA ATA CF +LR Sbjct: 111 PEWHHRLADLAAFTAGKLNLDPVELPGLDAVCERLGVTVSDRHSALADAHATATCFTILR 170 Query: 181 HTAAAHL 187 AA L Sbjct: 171 EIPAAAL 177 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 22/183 (12%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-ING 59 M++ +V+DLETTGLD VEVGL+ V+ G+ + + + P ++ + G Sbjct: 1 MSRTFVVLDLETTGLDPQADEIVEVGLVRVEDGKP--GAVFHALVRPSRPLPARIKSLTG 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + L + V +L G + FD + R Sbjct: 59 LDDADLAE----RPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAG----------- 103 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + +L + L+ + L +P H A+ DA A A F L Sbjct: 104 ----YRATQAYDTVDLARLVLPGLPSYRLELLCAHLDLPERPGHRAMEDARAAAGLFTAL 159 Query: 180 RHT 182 Sbjct: 160 LER 162 >UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC319F Length = 234 Score = 152 bits (385), Expect = 6e-36, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 17/185 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY 60 M K + +DLETTGL +E+G + G+ + + + + EI G Sbjct: 1 MIKDFVAIDLETTGLSPYDNKIIELGAVRYRDGKPVD-QYNTLINPGVHIPERITEITGI 59 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + + +++ + G N FD T +A +S+ +S Sbjct: 60 DDDMVSKA----PYIDDELDRIMEFIGNDVILGHNVIFDYTFIAGALAGHSIEYSAEA-- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 + K + E + L+ + E + V H A DA + A + L Sbjct: 114 ---------IDTLKFAKKVLPANESKNLEHLCEMFDI-VTIHHRAYEDAMSAANVYFRLC 163 Query: 181 HTAAA 185 + Sbjct: 164 ELSGE 168 >UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EC49_MACCJ Length = 850 Score = 152 bits (384), Expect = 7e-36, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 17/179 (9%) Query: 1 MAKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEING 59 M ++ VVD+ETTG + D+ ++VG+ V + + + I A ++ + Sbjct: 1 MNRKYAVVDIETTGNNLDSDEIIQVGIAIVQNKKIIETYDTFIACNNEIPAFIQS--LTK 58 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 + + + + L G F N FD + + F P Sbjct: 59 ID----AFDLVDAPNFSHVASHIIKLLDGCVFVAHNVQFDLRFLQKYFSEAGHKFQP--- 111 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + + K+ E L ++A+ LG+ + + H AI DA ATA F Sbjct: 112 ----RYIIDTVD---WFKIVYPSLERYQLKSIADDLGIELSSAHRAIDDAVATAEVFIE 163 >UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, putative n=28 Tax=Streptococcus RepID=Q04L99_STRP2 Length = 816 Score = 152 bits (384), Expect = 8e-36, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 17/182 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + +VVDLE T A ++VG++ ++ GE + V D E+ G ++ Sbjct: 7 RYVVVDLEATSTG-SKAKIIQVGIVVIEDGEIVD-HYTTDVNPHEPLDAHIKELTGLTDQ 64 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L + + ++ D + F N FD+ ++A + Sbjct: 65 RLAQA----PDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGY--------ELR 112 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + R+ + ++ E L + LG+P+ + H+A+ DA ATA LR Sbjct: 113 NPRVDTVE---LAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169 Query: 184 AA 185 A Sbjct: 170 AQ 171 >UniRef50_Q3K0L7 Exonuclease, DNA polymerase III, epsilon subunit family n=8 Tax=Firmicutes RepID=Q3K0L7_STRA1 Length = 604 Score = 152 bits (384), Expect = 8e-36, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 53/181 (29%), Gaps = 21/181 (11%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I D+ETTGL+ VEVG + + G+ + + V IN R Sbjct: 52 RFIAFDIETTGLNSQQDRIVEVGAVLFENGKVVDSYESL-VNAKVNISADVTRINNITNR 110 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN-----TFAGSNPAFDSTIVARQRVTYSMPFSPLT 118 + + E+ ++L N FD + Sbjct: 111 MIKNA----PSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGY------ 160 Query: 119 VGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 + + L + + N+ + VAE + N H A DA Sbjct: 161 -----NGEIKYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILTK 215 Query: 179 L 179 L Sbjct: 216 L 216 >UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGT7_BDEBA Length = 217 Score = 151 bits (383), Expect = 8e-36, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 52/179 (29%), Gaps = 15/179 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + I DLETTG VE+G + G+ ++ L P A +NG + Sbjct: 14 RFIAFDLETTGTVPGVDQIVEIGAVRFIDGQPEAIFA-TLIDPLRPIPPGASAVNGISDD 72 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + ++ + N FDS + + Sbjct: 73 MVKGK----PLIDTILPAFAEFCGEDVLVAHNAPFDSQFLIADIKKH----------ETT 118 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 R L + + L + + L +P N H A DA F + Sbjct: 119 APRGVILDSLPIARKVFPGLPNYKLGTLVQHLKIPTSNFHRAEEDATYLGHMFSQMMKR 177 >UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria RepID=DPO3_STRPF Length = 1465 Score = 151 bits (383), Expect = 9e-36, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 16/184 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +V D+ETTGL +++ + G + ++ E+ G ++ Sbjct: 426 TYVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEF-IDPGHPLSAFTTELTGITDK 484 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 L QD+ + + N +FD + + +P ++ Sbjct: 485 HLQGAK----PLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLP-------KIT 533 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF-CFDMLRHT 182 + L + + GL + +R V + + H A DA AT F L+ Sbjct: 534 QPVIDTLE---FARNLYPEYKRHGLGPLTKRFQVSLDHHHMANYDAEATGRLLFIFLKDA 590 Query: 183 AAAH 186 H Sbjct: 591 REKH 594 >UniRef50_B1VHF1 Putative exonuclease n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VHF1_CORU7 Length = 270 Score = 151 bits (383), Expect = 9e-36, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 64/183 (34%), Gaps = 5/183 (2%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + VVDLETTGL+ T +E+ +L V+ G + H + + ++ ING + Sbjct: 90 RCAVVDLETTGLEPATDRVIEIAVLTVEHGSIV-GSFHCLLNPECSIPGESSNINGLRDD 148 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A E+ + T G N FD +A + + + Sbjct: 149 DVAN----SPTFAEVAQELLPHVLNRTLVGHNVKFDVGFLAAEYARLGHADAARVLTEQC 204 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + AA A + + L +A G+ H A DAA T L A Sbjct: 205 LPQALCTAATARELIPREAVGRYTLANLAAHCGLASSPAHRAQQDAATTFDLTHRLYTIA 264 Query: 184 AAH 186 Sbjct: 265 QEP 267 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 151 bits (383), Expect = 9e-36, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 58/188 (30%), Gaps = 20/188 (10%) Query: 5 LIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 VVDLETTG + ++VG + V GE + + A ++ G Sbjct: 25 YSVVDLETTGTSVNHGDRIIQVGCVLVQDGEIIN-HFETKINPRVAVPRHITQLTGIKNN 83 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + G + L G F N FD + + P Sbjct: 84 DVRNA----PLFEDIAGTLYSLLSGTIFVAHNVNFDFPFLNAELERAGYPSLS------- 132 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF----DML 179 + + ++ + + L + L + + HSA+ DA ATA L Sbjct: 133 ---IKAIDTVTLSQILMPTVKSYRLRDLTSSLSIEHDHPHSAVSDAEATAHLLVDLMKQL 189 Query: 180 RHTAAAHL 187 R L Sbjct: 190 RELPTLTL 197 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 151 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 18/174 (10%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGY 60 K+ IVVDLETTG ++ V++G+ L + + E+ A E+ G Sbjct: 4 KRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTFLNPEKPIPA--FIQELTGI 61 Query: 61 YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVG 120 + + + L F N +FD T + R+ + Sbjct: 62 SPKDVKNA----PLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISLGK---- 113 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAF 174 + L ++ + L +++ + H A DA TA Sbjct: 114 ------MKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPHRADSDAEVTAD 161 >UniRef50_A3J795 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J795_9FLAO Length = 202 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 12/171 (7%) Query: 3 KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE 62 K+ +V D ETTGLDY + + +G + ++ + + +++ I+G + Sbjct: 32 KRYVVFDCETTGLDYKSDRILSIGAVAIENNQIIVGDFMEVFLLQDVFKAESVPIHGILK 91 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 G + + A A ++++ T G + FD ++ + L VG++ Sbjct: 92 EGKEEKIVE----AEAIIRFLEFIKDATLVGHHVDFDIEMINQGLAR-------LEVGKL 140 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATA 173 + + Y K + + LD + + + +RH+A GDA TA Sbjct: 141 KNQAMDTDVMYQKLKY-LPQEQHSSLDELCDIYKIRKSDRHTASGDAFITA 190 >UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7J6_HYDS0 Length = 196 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 15/178 (8%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 +V+D+ETTGL+ D +E+ V+ H + + EI G Sbjct: 12 YVVLDIETTGLNPDEHEIIEIFAFLVEKERITK-QFHRLINPGFFIPRRITEITGITNAM 70 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + + ++++ G N FD + +++ Y Sbjct: 71 L----VGQPKVEGIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNS------- 119 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHT 182 ++ K I + L AVA+ + H A DA T F+ L Sbjct: 120 ---PNICTLELSKKLIPNLKSYKLSAVADYFNIKYERLHRAKDDALLTYNIFNKLMDI 174 >UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJV7_ACIFE Length = 223 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 57/186 (30%), Gaps = 20/186 (10%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHI----TVEQLAAADPKAMEING 59 +VVDLETTGLD + +E+G L V G+ + T + P + G Sbjct: 24 TYVVVDLETTGLDPERDQIIEIGALEVTAGKRGRTFSTLLQPRTPLEGQYVSPFITRLTG 83 Query: 60 YYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTV 119 L Q A +L G N FD Sbjct: 84 ITNEMLAAA----PQPRQALEAFGKFLGSRVAVGYNVGFDMG-----------FLQQQFQ 128 Query: 120 GRVWHHRLAD-LAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDM 178 +++ D + + + L+ +A V H A+ D T CF Sbjct: 129 DQLYRPLANDWVDVLPMAQTLFPLWDHHRLNNLAAWYHVENKEAHRALSDVETTETCFRK 188 Query: 179 LRHTAA 184 L+ A Sbjct: 189 LKEDAG 194 >UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplasma RepID=Q600A7_MYCH2 Length = 1469 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 17/187 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 + ++ DLETTGL VE G + + G + ++ P +I G ++ Sbjct: 410 KFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKHQFF-IKPTGKIPPAITKITGISQK 468 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + A++ + A ++ ++ + N AFD + + + + Sbjct: 469 MIDETAISWEI---ALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQ-------KAKKSLK 518 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDM-LR 180 + + L + + L VA+R + H A DA + L Sbjct: 519 NPIIDTLE---VSRFLNPNEKSHSLKNVAKRYEIEYDEEIAHRADYDAKILTTIWKNFLA 575 Query: 181 HTAAAHL 187 + ++ Sbjct: 576 ELKSQNI 582 >UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capnocytophaga RepID=C7M4L1_CAPOD Length = 442 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 16/177 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTG Y+ ++ + G + + ++ G + Sbjct: 2 YAILDIETTGGKYNEEGITDIAIYQF-NGHEITDQFISLINPERPIQEFVTKLTGINNKM 60 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + + + G N AFD I+ + F Sbjct: 61 LRNA----PKFYEVAKRIVEITTDCIIVGHNAAFDYRILQTEFRRLGYDFVRT------- 109 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + I E L + LG+PV +RH A GDA AT F L Sbjct: 110 ----TLCTVELSERLIPNKESYSLGKLVRSLGIPVSDRHRASGDALATLKLFKYLLE 162 >UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO Length = 968 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 16/184 (8%) Query: 3 KQLIVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 + VVDLE TG + + ++ + + + + + L + Sbjct: 38 QTYAVVDLEMTGTNPNGSERLIQFSCVFTEGNKIVN-TFSTLINPLRKIPEDVQNLTNIT 96 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++ + G + L F N D + + P Sbjct: 97 D----KDVKSAPTFDEVAGTIYALLSDTVFVAHNIELDYRFLNSEFERIGFPKLD----- 147 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 L + ++ L +A LG + H A DA TA F +L+ Sbjct: 148 -----LEGIDTVQLAQIAFPTLASYRLGDLAHFLGFKHKHPHHADSDAFVTAELFILLQK 202 Query: 182 TAAA 185 A+ Sbjct: 203 KLAS 206 >UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRP3_9BACT Length = 193 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 18/179 (10%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYER 63 + +D+ETTGL VE+G + G F ++ + + +A+ I+G + Sbjct: 10 FVAIDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIPS--EAVAIHGITDE 67 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGN-TFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + + A + +L+ NP+FD + ++ + V Sbjct: 68 MVEGA----PGLSEASIALASFLKDEEPMVFHNPSFDLGFLDANMRAIKGSWNVMPVF-- 121 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D A + + L A+A G+ H A+ D +A F+++ Sbjct: 122 ------DTCGLA--RKAFPGIKGYSLVALARHFGLSGGGHHRALEDCRYSASLFNLILE 172 >UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit n=4 Tax=Lactococcus lactis RepID=D2BLE9_LACLK Length = 794 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 76/177 (42%), Gaps = 17/177 (9%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLY-FVPHITVEQLAAADPKAMEINGYYE 62 + VVDLE T +++G++ V+ GE + F + + P+ E+ G + Sbjct: 6 RYAVVDLEATDAHSSENKIIQIGIVLVEDGEIVETFSTEVNPHEP--LLPRISELTGLSD 63 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV 122 + L T + + G+V++ L + F N FD ++ + + + F+ Sbjct: 64 KQL----KTAPEFSEVAGKVRELLTDSVFVAHNARFDYGLLEKSFLNAGLEFNE------ 113 Query: 123 WHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 + + ++ E GL++++E+L + + H+A+ DA ATA + Sbjct: 114 ----MLRVDTVDLARVFYPTFEKYGLESLSEKLDLAHDHPHAAVSDAYATAELLLKI 166 >UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1U9_9ACTO Length = 206 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 52/185 (28%), Gaps = 16/185 (8%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 L+ VD+ETTGL D+ E+ + G+ + V + G + Sbjct: 16 TLVSVDIETTGLG-DSDAITELAAVKYQKGQVVE-TFSSLVNPGRQIPVFITRLTGIDNQ 73 Query: 64 GLYREALTEQQTAVAWGEVQDWLR--GNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + ++ + N FD+ + + + Sbjct: 74 LVADA----PTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQF----- 124 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 D ++ L + L +A G+ N H A+ DA + L Sbjct: 125 ---PASIDTVFFSRALLPRPQVQNHRLGTLAHHFGIKNPNAHRALADAYTCLELYKCLLD 181 Query: 182 TAAAH 186 A Sbjct: 182 VLHAA 186 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 22/185 (11%) Query: 9 DLETTGLDY-DTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAME-INGYYERGLY 66 DLETTG + +++ ++ + E + A P ++ + + Sbjct: 2 DLETTGHSPANGDRMIQIAIVIMKDWEIER--TYTKFINPGKAIPSFIQDLTHITNEDVK 59 Query: 67 REALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHR 126 + + L F N FD + + + +P W + Sbjct: 60 DSY----PFEEHADYIYELLADCVFVAHNADFDLSFLQAEFKRAGLPK--------WQGK 107 Query: 127 LADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCF----DMLRHT 182 D A K+ + L +A L + + N H A DA ATA F L + Sbjct: 108 KMDTVELA--KILFPMSLGFKLGDLAADLNIELANAHRADDDARATAELFKCCWKELLNL 165 Query: 183 AAAHL 187 L Sbjct: 166 PQLTL 170 >UniRef50_C1QET6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QET6_9SPIR Length = 252 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 60/177 (33%), Gaps = 14/177 (7%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 ++D+ETTGL +E+G + + + + T+ ++ + Sbjct: 61 YTIIDVETTGLKPREDKIIEIGAIKYRDNKEIDY--FSTLVKVDYIPNFISSYTNITNKM 118 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 + + A + D++ + G N FD + + + + Sbjct: 119 VKNA----PRVDEAIKQFYDFVGDDILVGYNVPFDIKFLYDAL------YEVSNGELLLN 168 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRH 181 + D+ A K + E VA + + N H A+GD + ++ L+ Sbjct: 169 NDFIDVMYIA--KRVLKDLENYKQVTVASYYNISIDNLHRAMGDCKLCSAIYECLQK 223 >UniRef50_C0GM30 DNA polymerase III, epsilon subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GM30_9DELT Length = 249 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 11/187 (5%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPK-AMEINGYYE 62 +V+D E TGL+ V +G L + PK ++ I+G Sbjct: 51 DFVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACPTRDVPKQSIVIHGITP 110 Query: 63 RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTY---SMPFSPLTV 119 + A + D+ + G N D +++ R+ + + Sbjct: 111 SEAQKA----PPLKEALQGLLDFCGNSIIVGHNINLDISVINRELKKEFGGELHNPCIDT 166 Query: 120 GRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDML 179 R+ G L ++ G+P+ H+A DA TA+ F L Sbjct: 167 MRLARQYREGQWT---GAYECYEEYSYNLRKLSREFGLPLFTEHNAFTDALQTAYLFIYL 223 Query: 180 RHTAAAH 186 H + Sbjct: 224 VHKMQVN 230 >UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V2X6_9AQUI Length = 206 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 67/181 (37%), Gaps = 14/181 (7%) Query: 4 QLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYER 63 +++DLETTGL +EV + +G + + H+T + K + + G Sbjct: 11 TFVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQLHHLTKPRENFIPSKVINLTGITNA 70 Query: 64 GLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVW 123 + + + + EV ++L+ + N FD + ++ + Sbjct: 71 MV----IDKPYFEDIYPEVYNFLKDSIVVAHNAKFDISFLSEVHK----------IVFKN 116 Query: 124 HHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTA 183 + RL + + + + L ++ LG+ +H A+ DA AT F + Sbjct: 117 NLRLHYICTDNLARRIFPEIQKKSLSSLTNYLGINFKQKHRALSDAQATLQAFQTMLEYL 176 Query: 184 A 184 Sbjct: 177 Q 177 >UniRef50_C0WGE7 Possible exonuclease n=2 Tax=Corynebacterium RepID=C0WGE7_9CORY Length = 1118 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 16/179 (8%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 +K+ VVD ETTG T +E+G++ +D + V+ ++ Sbjct: 4 SKRYAVVDFETTGFG-STDRVIEIGVVLLDHNREVESTWETLVQPQRDIPNSF--VHRIT 60 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR 121 + + GE + L G T N F+ + R+ + + Sbjct: 61 PT----DVVDAPLFGEVAGEFFELLNGRTVVAHNAPFEVRFLQREFSNLGVAWPNYGAWV 116 Query: 122 VWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLR 180 V RL P E L+ E +G+ HSA+ DA ATA F L Sbjct: 117 VDTKRL---------FQQTYPGEGTTLEHALEVVGITNARPHSALADALATAELFAQLV 166 >UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma RepID=DPO3_UREPA Length = 1442 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 63/182 (34%), Gaps = 18/182 (9%) Query: 2 AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY 61 ++ D+ETTGL + +E G + + + + ++ + + + Sbjct: 406 NATYVIFDIETTGLFPNFDEIIEFGAVIMQNNKQIGEKIQFFIKPIQQINENVTNLTNIS 465 Query: 62 ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSN-PAFDSTIVARQRVTYSMPFSPLTVG 120 + + A ++++ + N FD + ++ + + + Sbjct: 466 QEMVNNAI----DEKTALLKIKEIFDDHILVAHNGINFDINFINQRLLKWGLE------- 514 Query: 121 RVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVN--RHSAIGDAAATAFCFDM 178 + + + L I+P + L A+ ++ V + H A DA A F + Sbjct: 515 PLKNPSIDTLMIS----RAINPFKSHRLGAICKKYEVDYNDESAHRADYDAIVLADVFKV 570 Query: 179 LR 180 ++ Sbjct: 571 MK 572 >UniRef50_C9NHS4 DNA polymerase III, epsilon subunit n=2 Tax=Streptomyces RepID=C9NHS4_9ACTO Length = 346 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 60/180 (33%), Gaps = 17/180 (9%) Query: 5 LIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 VVD+ETTGL + + +D + + V P + I+G Sbjct: 32 YAVVDVETTGL-ARDDRIISAAVYRLDARGDVEDHWYTLVNPERDPGP--VWIHGLTSDV 88 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L E+ + L G N AFD +++AR+ V Sbjct: 89 LEGA----PLFPQVAAELSERLAGRVLVAHNAAFDWSMIAREYARA----------AVTA 134 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHSAIGDAAATAFCFDMLRHTAA 184 L A K P L+++A GV + H A+ DA A F H AA Sbjct: 135 PVEQRLCTIALAKELRLPLPNHKLESLAAHFGVVQQHAHHALDDARVLAEAFRPSLHAAA 194 >UniRef50_B0RTE6 DNA polymerase III epsilon chain n=11 Tax=Proteobacteria RepID=B0RTE6_XANCB Length = 245 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 14/178 (7%) Query: 6 IVVDLETTGLDYDT-ALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYERG 64 I++D ETTGL++ VE+G + + H + +P A E+ G Sbjct: 4 IILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDCDFEPGAQEVTGLTLEF 63 Query: 65 LYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWH 124 L + A E ++ G N AFD + + F + + Sbjct: 64 LADK----PVFAEVVEEFLAYIDGAELIIHNAAFDLGFLDNELSLLGDQFGRI----IDR 115 Query: 125 HRLADLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNR--HSAIGDAAATAFCFDMLR 180 + D A + P + LDA+ +RLGV +R H A+ DA A + L Sbjct: 116 ATVVDTLMMARER---YPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALT 170 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.178 0.564 Lambda K H 0.267 0.0544 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,065,621,521 Number of Sequences: 3077464 Number of extensions: 42193566 Number of successful extensions: 139013 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1103 Number of HSP's successfully gapped in prelim test: 1562 Number of HSP's that attempted gapping in prelim test: 132963 Number of HSP's gapped (non-prelim): 2792 length of query: 187 length of database: 1,040,396,356 effective HSP length: 121 effective length of query: 66 effective length of database: 668,023,212 effective search space: 44089531992 effective search space used: 44089531992 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 90 (38.9 bits)