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Job DescriptionASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain]
Confidence96.49%DateMon Jun 7 16:50:03 BST 2021
Rank92Aligned Residues134
% Identity14%Templated1vk0a_
SCOP infoRibonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease
Resolution2.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.. .......20.........30.........40.........50.......
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Query Sequence  AKQLIVVDLET. . . . TGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEI
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Template Sequence  GNRAVIFDVYWDVGFTKTSGWSLSSVKLST. . . . RNLCLFLRLP. . . . . . . . . . . . . . . .
Template Known Secondary structure  STT



GGGG

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   45....50.........60.........70.... .....80....
 
   58.60.........70.........80.........90.........100.........110.......
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Query Sequence  NGYYERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPL
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Template Sequence  . . . . . . . . . . . . KPFHDNLKDLYRFFAS. KFVTFVGVQIEEDLDLLRENH. . . . . . . . . .
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GGGT
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   91........100...... ...110.........120.......
 
   118.120.........130.........140.........150.... .....160...
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Query Sequence  TVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAER. LGVPVVNRH. . . . . . . . . . . . .
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Template Sequence  . . . GLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEE
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SST
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   128.130.........140.........150.........160.........170.........180....
 
   164.....170.........180.
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Query Sequence  . . . SAIGDAAATAFCFDMLRH
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Template Sequence  QLEAAAIEGWLIVNVWDQLSD
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   185....190.........200.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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