Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 95.81% Date Mon Jun 7 16:50:03 BST 2021 Rank 93 Aligned Residues 173 % Identity 8% Template c6v93A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase zeta catalytic subunit; PDBTitle: structure of dna polymerase zeta/dna/dntp ternary complex Resolution 3.10 Å

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		4	.	.	.	.	.	10	.	.	.	.	.						.	.	.	.	20	.	.	.	.	.	.	.	.							.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure														.	.	.	.	.														.	.	.	.	.	.
Query SS confidence														.	.	.	.	.														.	.	.	.	.	.
Query Sequence		Q	L	I	V	V	D	L	E	T	T	G	L	.	.	.	.	.	D	Y	D	T	A	L	P	V	E	V	G	L	L	.	.	.	.	.	.	N	V	D	T	G	E	S	L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P
Query Conservation														.	.	.	.	.														.	.	.	.	.	.
Alig confidence														.	.	.	.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		T	H	L	T	L	E	I	H	A	N	T	R	S	D	K	I	P	D	P	A	I	D	E	V	S	M	I	I	W	C	L	E	E	E	T	F	P	L	D	L	D	I	A	Y	E	G	I	M	I	V	H	K	A	D	S	T	F	P	T	K
Template Known Secondary structure													S	S	S					T	T	T												T	T	T			S			S	S	T	T												S
Template Predicted Secondary structure
Template SS confidence
		668	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		K	A	M	E	I	N	G	Y	Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	.	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y	S
Query Conservation																																														.
Alig confidence																																.	.	.	.											.
Template Conservation																																.	.	.	.
Template Sequence		I	Q	H	C	I	N	E	I	P	V	M	F	Y	E	S	E	F	E	M	F	E	A	L	T	D	L	V	L	L	L	.	.	.	.	D	P	D	I	L	S	G	F	E	I	H	N	F	S	W	G	Y	I	I	E	R	C	Q	K	I	H
Template Known Secondary structure								S	S						S	S																.	.	.	.			S					S	S		S	S	S												T	T
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.					760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130														.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		M	P	F	S	P	L	T	V	G	R	V	W	H	H	R	L	A	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R	.	L	G	V
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		Q	F	D	I	V	R	E	L	A	R	V	K	C	S	D	T	W	G	Y	A	H	S	S	G	I	M	I	T	G	R	H	M	I	N	I	W	R	A	L	R	S	D	V	N	L	T	Q	Y	T	I	E	S	A	A	F	N	I	L	H	K
Template Known Secondary structure										S	S	B											S						S	S	S													S			S	S											S
Template Predicted Secondary structure
Template SS confidence
		786	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.
		158	.	160	.	.	.																							.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	V	N	R	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L	R
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	P	H	F	S	F	E	S	L	T	N	M	W	N	A	K	K	S	T	T	E	L	K	T	V	L	N	Y	W	L	S	R	A	Q	I	N	I	Q	L	L	R	K	Q	D
Template Known Secondary structure																T		S	S																										T	T
Template Predicted Secondary structure
Template SS confidence
		852	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
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