Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 98.05% Date Mon Jun 7 16:50:03 BST 2021 Rank 67 Aligned Residues 167 % Identity 17% Template c6tnyA_ PDB info PDB header:replication Chain: A: PDB Molecule:dna polymerase delta catalytic subunit; PDBTitle: processive human polymerase delta holoenzyme Resolution 3.08 Å

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		4	.	.	.	.	.	10	.	.	.	.	.						.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		Q	L	I	V	V	D	L	E	T	T	G	L	.	.	.	.	.	D	Y	D	T	A	L	P	V	E	V	G	L	L	N	V	D	T	G	E	S	L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P	K	A	M	E	I	N
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.
Template Conservation
Template Sequence		R	V	L	S	F	D	I	E	C	A	G	R	K	G	I	F	P	E	P	E	R	D	P	V	I	Q	I	C	S	L	G	L	R	W	G	E	P	E	P	F	L	R	L	A	L	T	L	R	P	C	A	P	I	L	G	A	K	V	Q	S
Template Known Secondary structure														S	S					T	T	T													T	T	S	S	S		S							S	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		G	Y	Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	.	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y	S	M	P	F	S	P	L
Query Conservation																																								.
Alig confidence												.	.	.	.	.	.	.	.	.	.																			.
Template Conservation												.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	E	K	E	E	D	L	L	Q	A	.	.	.	.	.	.	.	.	.	.	W	S	T	F	I	R	I	M	D	P	D	V	I	T	G	Y	N	I	Q	N	F	D	L	P	Y	L	I	S	R	A	Q	T	L	K	V	Q	T	F	P	F
Template Known Secondary structure			S	S								.	.	.	.	.	.	.	.	.	.											S					S	S	T	T	T	T												T	T		T	T	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380											.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		118	.	120	.	.	.	.																								.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	G	R	V	W	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	R	V	A	G	L	C	S	N	I	R	D	S	S	F	Q	S	K	Q	T	G	R	R	D	T	K	V	V	S	M	V	G	R	V	Q	M	D	M	L	Q	V	L	L	R	E	Y	K	L	R	S	Y	T	L	N	A	V	S	F	H
Template Known Secondary structure			S	S	B	T	T													T	T	T											S	S																	S			S
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		155	.	.	.	.	160	.	.	.	.																.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	V	P	V	V	N	R	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L	R
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	G	E	H	S	I	I	T	D	L	Q	N	G	N	D	Q	T	R	R	R	L	A	V	Y	C	L	K	D	A	Y	L	P	L	R	L	L	E	R	L	M
Template Known Secondary structure			T				T	T						S	S																										T	T
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.

No model constructed - rank, confidence too low

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
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