Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 98.06% Date Mon Jun 7 16:50:03 BST 2021 Rank 66 Aligned Residues 167 % Identity 13% Template c6p1hA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna polymerase delta catalytic subunit; PDBTitle: cryo-em structure of dna polymerase delta holoenzyme Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.						.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		Q	L	I	V	V	D	L	E	T	T	G	L	.	.	.	.	.	D	Y	D	T	A	L	P	V	E	V	G	L	L	N	V	D	T	G	E	S	L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P	K	A	M	E	I	N
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.
Template Conservation
Template Sequence		R	I	M	S	F	D	I	E	C	A	G	R	I	G	V	F	P	E	P	E	Y	D	P	V	I	Q	I	A	N	V	V	S	I	A	G	A	K	K	P	F	I	R	N	V	F	T	L	N	T	C	S	P	I	T	G	S	M	I	F	S
Template Known Secondary structure														T	T	S				T	T	T	S												T	T		S	S		S							S	S					B	T	T	B				B
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		G	Y	Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	.	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y	S	M	P	F	S	P	L
Query Conservation																																								.
Alig confidence												.	.	.	.	.	.	.	.	.	.																			.
Template Conservation												.	.	.	.	.	.	.	.	.	.
Template Sequence		H	A	T	E	E	E	M	L	S	N	.	.	.	.	.	.	.	.	.	.	W	R	N	F	I	I	K	V	D	P	D	V	I	I	G	Y	N	T	T	N	F	D	I	P	Y	L	L	N	R	A	K	A	L	K	V	N	D	F	P	Y
Template Known Secondary structure			S	S								.	.	.	.	.	.	.	.	.	.											S				B	S	S	T	T	T	T												T	T			S	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		376	.	.	.	380	.	.	.	.	.											.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		118	.	120	.	.	.	.	.																								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	G	R	V	W	H	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	R	L	K	T	V	K	Q	E	I	K	E	S	V	F	S	S	K	A	Y	G	T	R	E	T	K	N	V	N	I	D	G	R	L	Q	L	D	L	L	Q	F	I	Q	R	E	Y	K	L	R	S	Y	T	L	N	A	V	S	A	H
Template Known Secondary structure			S	S	B	T	T													T	T	T											T	T		B			B												S			S
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.																						.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	V	P	V	V	N	R	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L	R
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	G	E	Q	K	E	D	V	H	Y	S	I	I	S	D	L	Q	N	G	D	S	E	T	R	R	R	L	A	V	Y	C	L	K	D	A	Y	L	P	L	R	L	M	E	K	L	M
Template Known Secondary structure			T							B		S	T							T	S																											T
Template Predicted Secondary structure
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.

No model constructed - rank, confidence too low

---

Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Michael Sternberg   Disclaimer Terms and Conditions		Phyre2 is part of Genome3D