Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 98.76% Date Mon Jun 7 16:50:03 BST 2021 Rank 42 Aligned Residues 165 % Identity 19% Template c5okiA_ PDB info PDB header:replication Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a; PDBTitle: crystal structure of the ctf18-1-8 module from ctf18-rfc in complex2 with a 63 kda fragment of dna polymerase epsilon Resolution 4.50 Å

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		4	.	.	.	.	.	10	.	.	.	.	.						.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		Q	L	I	V	V	D	L	E	T	T	G	L	.	.	.	.	.	D	Y	D	T	A	L	P	V	E	V	G	L	L	N	V	D	T	G	E	S	L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P	K	A	M	E	I	N
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.
Template Conservation
Template Sequence		V	V	M	A	F	A	I	A	T	T	K	P	P	L	K	F	P	D	S	A	V	D	Q	I	M	M	I	S	Y	M	I	D	G	E	G	F	L	I	T	N	R	E	I	I	S	E	D	I	E	D	F	E	Y	T	P	K	P	E	Y	P
Template Known Secondary structure														T	T	S				T	T	T											T	T								T	T	T	S		S									S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		59	60								.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure				.	.	.	.	.	.	.																																					.
Query SS confidence				.	.	.	.	.	.	.																																					.
Query Sequence		G	Y	.	.	.	.	.	.	.	Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	.	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y
Query Conservation				.	.	.	.	.	.	.																																					.
Alig confidence				.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																			.	.	.	.	.	.	.	.	.	.
Template Sequence		G	F	F	T	I	F	N	E	N	D	E	V	A	L	L	Q	R	.	.	.	.	.	.	.	.	.	.	F	F	E	H	I	R	D	V	R	P	T	V	I	S	T	F	N	G	D	F	F	D	W	P	F	I	H	N	R	S	K	I	H
Template Known Secondary structure										S	S								.	.	.	.	.	.	.	.	.	.											S					S	S	T	T	T	T												T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.											.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		111	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.
Predicted Secondary structure					.	.	.	.	.	.																											.																.
Query SS confidence					.	.	.	.	.	.																											.																.
Query Sequence		S	M	P	.	.	.	.	.	.	F	S	P	L	T	V	G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	.	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R	.	L	G	V	P	V	V	N	R
Query Conservation					.	.	.	.	.	.																											.																.
Alig confidence					.	.	.	.	.	.																											.																.
Template Conservation
Template Sequence		G	L	D	M	F	D	E	I	G	F	A	P	D	A	E	G	E	Y	K	S	S	Y	C	S	H	M	D	C	F	R	W	V	K	R	D	S	Y	L	P	Q	G	S	Q	G	L	K	A	V	T	Q	S	K	L	G	Y	N	P	I	E	L
Template Known Secondary structure		T								S					T	T	S					S	S	S													S				G	G	G		S									T		S
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		163	.																		.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	G	D	A	A	A	T	A	F	C	F	D	M
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	E	L	M	T	P	Y	A	F	E	K	P	Q	H	L	S	E	Y	S	V	S	D	A	V	A	T	Y	Y	L	Y	M	K
Template Known Secondary structure			G	G	G
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
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