Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 97.83% Date Mon Jun 7 16:50:03 BST 2021 Rank 73 Aligned Residues 175 % Identity 13% Template c5exrG_ PDB info PDB header:replication Chain: G: PDB Molecule:dna polymerase alpha catalytic subunit; PDBTitle: crystal structure of human primosome Resolution 3.60 Å

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		4	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30											.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure											.																			.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																			.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	I	V	V	D	L	E	T	.	T	G	L	D	Y	D	T	A	L	P	V	E	V	G	L	L	N	V	.	.	.	.	.	.	.	.	.	.	D	T	G	E	S	L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P
Query Conservation											.																			.	.	.	.	.	.	.	.	.	.
Alig confidence											.																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	M	A	F	S	M	K	T	M	Q	N	A	K	N	H	Q	N	E	I	I	A	M	A	A	L	V	H	H	S	F	A	L	D	K	A	A	P	K	P	P	F	Q	S	H	F	C	V	V	S	K	P	K	D	C	I	F	P	Y	A
Template Known Secondary structure														S	S	S	S																	T	T	S				S	S	S		S		B			B	B				S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		K	A	M	E	I	N	G	Y	Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	.	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y	S
Query Conservation																																														.
Alig confidence															.	.																														.
Template Conservation															.	.
Template Sequence		F	K	E	V	I	E	K	K	N	V	K	V	E	.	.	V	A	A	T	E	R	T	L	L	G	F	F	L	A	K	V	H	K	I	D	P	D	I	I	V	G	H	N	I	Y	G	F	E	L	E	V	L	L	Q	R	I	N	V	C	K
Template Known Secondary structure									S						.	.	B		S	S																		S					S	S	T	T	T	T												T	T
Template Predicted Secondary structure															.	.
Template SS confidence
		598	.	600	.	.	.	.	.	.	.	.	.	610			.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.
		112	.	.										.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.																																									.
Query SS confidence					.	.	.	.	.	.	.	.	.																																									.
Query Sequence		M	P	F	.	.	.	.	.	.	.	.	.	S	P	L	T	V	G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R	.	L	G	V	P	V	V	N
Query Conservation					.	.	.	.	.	.	.	.	.																																									.
Alig confidence					.	.	.	.	.	.	.	.	.																																									.
Template Conservation
Template Sequence		A	P	H	W	S	K	I	G	R	L	K	R	S	N	M	P	K	G	E	R	N	A	T	C	G	R	M	I	C	D	V	E	I	S	A	K	E	L	I	R	C	K	S	Y	H	L	S	E	L	V	Q	Q	I	L	K	T	E	R	V	V
Template Known Secondary structure			T	T	G	G	G	G	S	S	S			S	S						T	T	T	T	T	T	S											T	T				S			S								T	S		S
Template Predicted Secondary structure
Template SS confidence
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
		162	.	.																				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L	R
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	P	M	E	N	I	Q	N	M	Y	S	E	S	S	Q	L	L	Y	L	L	E	H	T	W	K	D	A	K	F	I	L	Q	I	M	C	E	L	N
Template Known Secondary structure				T	T	T	S	G	G	G	T	T	S																									T	T
Template Predicted Secondary structure
Template SS confidence
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760

No model constructed - rank, confidence too low

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
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