Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 99.91% Date Mon Jun 7 16:50:03 BST 2021 Rank 28 Aligned Residues 165 % Identity 20% Template c4wbqA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:qde-2-interacting protein; PDBTitle: crystal structure of the exonuclease domain of qip (qde-2 interacting2 protein) solved by native-sad phasing. Resolution 2.69 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.											.
Query SS confidence																																			.											.
Query Sequence		A	K	Q	L	I	V	V	D	L	E	T	T	G	L	D	Y	D	T	A	L	P	V	E	V	G	L	L	N	V	D	T	G	E	.	S	L	Y	F	V	P	H	I	T	V	.	E	Q	L	A	A	A	D	P	K	A	M	E	I	N	G
Query Conservation																																			.											.
Alig confidence																		.	.																.											.
Template Conservation																		.	.
Template Sequence		S	V	V	F	V	A	I	D	L	E	A	Y	E	L	D	Q	.	.	S	I	I	T	E	V	G	L	A	I	L	D	T	A	E	I	T	K	N	W	F	D	F	I	K	A	R	H	I	R	V	K	E	F	S	W	A	Q	E	Y	F	D
Template Known Secondary structure														T	T			.	.													G	G	G	G				G	G	G	G									G	G	G	S	S						T
Template Predicted Secondary structure																		.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y	S	M	P	F	S	P	L	T	V
Query Conservation
Alig confidence											.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		F	G	E	S	E	F	I	E	V	.	.	.	.	A	K	I	A	S	V	L	K	E	T	I	E	G	K	R	P	V	V	L	V	F	H	D	Q	S	Q	D	L	K	Y	I	R	M	L	G	Y	D	V	A	S	A	D	N	I	L	E	V
Template Known Secondary structure		T	S								.	.	.	.																						S	S											T	T			G	G	G		S
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		407	.	.	410	.	.	.	.	.					.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R	L	G	V	P	V	V	N	R	H	S	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.																										.
Template Conservation							.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		V	D	T	R	E	.	.	.	.	.	.	.	.	.	.	M	Y	Q	Y	L	S	R	S	N	N	A	S	K	L	S	N	V	C	G	Y	L	D	I	P	W	.	N	M	H	N	A	G	N	D	A	V	Y	T	L	Q	A	M	M	G	L
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.					G	G	G															T				.			S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		472	.	.	.	.											.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.		.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	D	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		522	.	.	.

No model constructed - rank, confidence too low

---

Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Michael Sternberg   Disclaimer Terms and Conditions		Phyre2 is part of Genome3D