Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 99.60% Date Mon Jun 7 16:50:03 BST 2021 Rank 34 Aligned Residues 177 % Identity 19% Template c4gmjB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:ccr4-not transcription complex subunit 7; PDBTitle: structure of human not1 mif4g domain co-crystallized with caf1 Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																						.	.	.	.	.	.	.	.	30	.	.	.								.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Query Sequence		Q	L	I	V	V	D	L	E	T	T	G	L	D	Y	D	T	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	E	V	G	L	L	N	V	D	T	G	.	.	.	.	.	.	.	E	S
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	V	A	M	D	T	E	F	P	G	V	V	A	R	P	I	G	E	F	R	S	N	A	D	Y	Q	Y	Q	L	L	R	C	N	V	D	L	L	K	I	I	Q	L	G	L	T	F	M	N	E	Q	G	E	Y	P	P	G	T	S	T
Template Known Secondary structure																		T	T			T	T	S	T	T											T	T	S												T	T	S				S	S
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																								.	.	.																								.
Query SS confidence																								.	.	.																								.
Query Sequence		L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P	K	A	M	E	I	.	.	.	N	G	Y	Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	.	E	V	Q	D	W	L	R	G	N	T	F
Query Conservation																								.	.	.																								.
Alig confidence								.																.	.	.																								.
Template Conservation								.
Template Sequence		W	Q	F	N	F	K	.	F	N	L	T	E	D	M	Y	A	Q	D	S	I	E	L	L	T	T	S	G	I	Q	F	K	K	H	E	E	E	G	I	E	T	Q	Y	F	A	E	L	L	M	T	S	G	V	V	L	C	E	G	V	K	W
Template Known Secondary structure						B		.			T	T	T	S														T											B											T	S	S	S	S	S		T	T
Template Predicted Secondary structure								.
Template SS confidence
		95	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	S	N	P	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y	S	M	P	F	S	P	L	T	V	G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		L	S	F	H	S	G	Y	D	F	G	Y	L	I	K	I	L	T	N	S	N	L	P	E	E	E	L	D	F	F	E	I	L	R	L	F	F	P	V	I	Y	D	V	K	Y	L	M	K	S	C	K	N	L	K	G	.	G	L	Q	E	V
Template Known Secondary structure				S	S														T	S				S	S													S									G	G	G	S	T	T			S	.
Template Predicted Secondary structure																																																								.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.
		152	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		A	E	R	L	G	V	P	V	V	N	.	R	H	S	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L	R	H	T
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		A	E	Q	L	E	L	E	R	I	G	P	Q	H	Q	A	G	S	D	S	L	L	T	G	M	A	F	F	K	M	R	E	M
Template Known Secondary structure					T	T					S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Michael Sternberg   Disclaimer Terms and Conditions		Phyre2 is part of Genome3D