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Job DescriptionASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain]
Confidence99.97%DateMon Jun 7 16:50:03 BST 2021
Rank7Aligned Residues172
% Identity20%Templatec3u6fA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:three prime repair exonuclease 1; PDBTitle: mouse trex1 d200n mutant
Resolution2.30 Å
Model Dimensions (Å)X:48.516 Y:43.793 Z:32.017

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.... .....40.......
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Query Sequence  KQLIVVDLETTGLDYDTALPVEVGLLNVDTGE. . . . . . . . . . . . . . . SLYFVPHITVEQL
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Template Sequence  QTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENSQGHPPPVPRPPRVVDKLSLCIAPG
Template Known Secondary structure  SSS
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S
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   12.......20.........30.........40.........50.........60.........70.
 
   48.50.........60.........70.. .......80.........90...... ...100...
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Query Sequence  AAADPKAMEINGYYERGLYREALTE. . . QQTAVAWGEVQDWLRGNTFAGSNP. AFDSTIV
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Template Sequence  KACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLL
Template Known Secondary structure  S


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   75....80.........90.........100.........110.........120.........130....
 
   104.....110.........120.........130.........140.........150..... ....160..
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Query Sequence  ARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTELEGLDAVAERL. GVPVVNR
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Template Sequence  QTELARLSTPSPLDGTFCV. . . . . . . . DSIAALKALEQARKSYSLGSIYTRLYWQAPTDS
Template Known Secondary structure  T
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   135....140.........150... ......160.........170.........180......
 
   163......170.........180..
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Query Sequence  HSAIGDAAATAFCFDMLRHT
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Template Sequence  HTAEGNVLTLLSICQWKPQA
Template Known Secondary structure  SSTSS
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   195....200.........210....
 
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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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