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Job DescriptionASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain]
Confidence82.33%DateMon Jun 7 16:50:03 BST 2021
Rank104Aligned Residues128
% Identity16%Templatec3sahA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:exosome component 10; PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.
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Query Sequence  AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY
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Template Sequence  NCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIID. . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T
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   306...310.........320.........330.........340.
 
   62.......70.........80.........90.........100.........110.........120.
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Query Sequence  ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR
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Template Sequence  . . . . . . . TLELRSDMYILNESLT. DPAIVKVFHGADSDIEWLQKDFGLYVVNMF. . . . . .
Template Known Secondary structure  .......TTTTGGGGGGGT.
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   342.......350....... ..360.........370.........380.......
 
   122.......130.........140.........150.... .....160....
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Query Sequence  VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER. LGVPVVNRHS. . . . . . . . . . . . . . . .
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Template Sequence  . . . . . . . . . DTHQAARLLN. . . . . HSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSA
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   388.390....... ..400.........410.........420.........430...
 
   165....170.........180.
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Query Sequence  AIGDAAATAFCFDMLRH
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Template Sequence  ARDDTHYLLYIYDKMRL
Template Known Secondary structure  S
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   437..440.........450...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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