Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 97.57% Date Mon Jun 7 16:50:03 BST 2021 Rank 80 Aligned Residues 165 % Identity 18% Template c1s5jA_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna polymerase i; PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus Resolution 2.40 Å

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		4	.	.	.	.	.	10	.	.					.	.	.	.	.	.	.	20	.					.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.
Predicted Secondary structure											.	.	.	.										.	.	.	.
Query SS confidence											.	.	.	.										.	.	.	.
Query Sequence		Q	L	I	V	V	D	L	E	T	.	.	.	.	T	G	L	D	Y	D	T	A	L	.	.	.	.	P	V	E	V	G	L	L	N	V	D	T	G	E	S	L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P	K	A	M
Query Conservation											.	.	.	.										.	.	.	.
Alig confidence											.	.	.	.										.	.	.	.
Template Conservation
Template Sequence		K	R	V	A	I	D	I	E	V	Y	T	P	V	K	G	R	I	P	D	S	Q	K	A	E	F	P	I	I	S	I	A	L	A	G	S	D	G	L	K	K	V	L	V	L	N	R	N	D	V	N	E	G	S	V	K	L	D	G	I	S
Template Known Secondary structure													S	S	S	S					T	T	T			S										T	T	S									S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																											.																		.
Query SS confidence																																											.																		.
Query Sequence		E	I	N	G	Y	Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	.	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y	S	M	P	.
Query Conservation																																											.																		.
Alig confidence														.	.	.	.	.	.	.	.	.							.	.	.												.																		.
Template Conservation														.	.	.	.	.	.	.	.	.							.	.	.
Template Sequence		V	E	R	F	N	T	E	Y	E	L	L	G	.	.	.	.	.	.	.	.	.	R	F	F	D	I	L	.	.	.	L	E	Y	P	I	V	L	T	F	N	G	D	D	F	D	L	P	Y	I	Y	F	R	A	L	K	L	G	Y	F	P
Template Known Secondary structure						S	S							.	.	.	.	.	.	.	.	.							.	.	.	T	T		S					S	S	T	T	T	T											T	T	T			G
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.							.	.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.										.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
													114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																										.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																										.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	F	S	P	L	T	V	G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R	.	L	G	V	P	V	V	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																										.
Template Conservation
Template Sequence		E	E	I	P	I	D	V	A	G	K	D	E	A	K	Y	L	A	G	L	H	I	D	L	Y	K	F	F	F	N	K	A	V	R	N	Y	A	F	E	G	K	Y	N	E	Y	N	L	D	A	V	A	K	A	L	L	G	T	S	K	V	D
Template Known Secondary structure		G	G		S					S	T	T					T	T	S										T	S							T	S	T	T			S	S		S															S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		162	.	.	.	.												.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	H	S	A	I	.	.	.	.	.	.	.	.	.	.	.	G	D	A	A	A	T	A	F	C	F	D	M	L	R
Query Conservation							.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	I	S	F	L	D	V	E	K	L	I	E	Y	N	F	R	D	A	E	I	T	L	Q	L	T	T	F	N	N
Template Known Secondary structure		S		T	T	T																				T	T	T
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.

No model constructed - rank, confidence too low

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
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